Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347740 | XP_013443114.1 | 94.872 | 156 | 8 | 0 | 1 | 156 | 1 | 156 | 2.11e-105 | 311 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347740 | sp|Q9SZM1|EXP20_ARATH | 62.069 | 145 | 51 | 2 | 14 | 156 | 12 | 154 | 5.20e-61 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347740 | I3SE17 | 94.872 | 156 | 8 | 0 | 1 | 156 | 1 | 156 | 1.01e-105 | 311 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa1347740 | 0.817611 | 3.014483e-52 | -8.615850e-47 |
| Msa0042640 | Msa1347740 | 0.802098 | 6.591338e-49 | -8.615850e-47 |
| Msa1346560 | Msa1347740 | 0.800650 | 1.304838e-48 | -8.615850e-47 |
| Msa1347740 | Msa1415540 | 0.810993 | 8.741775e-51 | -8.615850e-47 |
| Msa0675330 | Msa1347740 | 0.805305 | 1.423662e-49 | -8.615850e-47 |
| Msa1316330 | Msa1347740 | 0.817924 | 2.562570e-52 | -8.615850e-47 |
| Msa0244640 | Msa1347740 | 0.806807 | 6.874360e-50 | -8.615850e-47 |
| Msa0340500 | Msa1347740 | 0.807247 | 5.548994e-50 | -8.615850e-47 |
| Msa0528570 | Msa1347740 | 0.813018 | 3.165010e-51 | -8.615850e-47 |
| Msa0548470 | Msa1347740 | 0.802097 | 6.594058e-49 | -8.615850e-47 |
| Msa0585020 | Msa1347740 | 0.801614 | 8.285096e-49 | -8.615850e-47 |
| Msa0597270 | Msa1347740 | 0.814366 | 1.597794e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347740 | MtrunA17_Chr4g0021561 | 94.872 | 156 | 8 | 0 | 1 | 156 | 1 | 156 | 1.94e-109 | 311 |
| Msa1347740 | MtrunA17_Chr2g0324191 | 74.342 | 152 | 38 | 1 | 6 | 156 | 1 | 152 | 4.21e-88 | 254 |
| Msa1347740 | MtrunA17_Chr4g0031621 | 45.513 | 156 | 77 | 2 | 9 | 156 | 1 | 156 | 9.88e-46 | 150 |
| Msa1347740 | MtrunA17_Chr5g0435311 | 49.231 | 130 | 66 | 0 | 27 | 156 | 77 | 206 | 1.58e-44 | 148 |
| Msa1347740 | MtrunA17_Chr7g0238681 | 48.462 | 130 | 67 | 0 | 27 | 156 | 27 | 156 | 8.16e-44 | 145 |
| Msa1347740 | MtrunA17_Chr2g0328261 | 47.692 | 130 | 68 | 0 | 27 | 156 | 29 | 158 | 1.27e-43 | 144 |
| Msa1347740 | MtrunA17_Chr4g0069711 | 56.800 | 125 | 52 | 1 | 32 | 156 | 61 | 183 | 2.39e-43 | 144 |
| Msa1347740 | MtrunA17_Chr5g0433841 | 53.968 | 126 | 57 | 1 | 31 | 156 | 40 | 164 | 2.56e-42 | 141 |
| Msa1347740 | MtrunA17_Chr8g0360041 | 43.590 | 156 | 85 | 2 | 1 | 156 | 1 | 153 | 7.74e-42 | 140 |
| Msa1347740 | MtrunA17_Chr7g0218751 | 46.207 | 145 | 73 | 2 | 12 | 156 | 11 | 150 | 1.14e-41 | 139 |
| Msa1347740 | MtrunA17_Chr1g0193631 | 50.000 | 134 | 64 | 2 | 25 | 156 | 23 | 155 | 9.49e-41 | 137 |
| Msa1347740 | MtrunA17_Chr4g0042521 | 45.833 | 144 | 76 | 1 | 13 | 156 | 6 | 147 | 6.32e-40 | 134 |
| Msa1347740 | MtrunA17_Chr5g0432611 | 42.953 | 149 | 83 | 1 | 8 | 156 | 5 | 151 | 6.47e-40 | 135 |
| Msa1347740 | MtrunA17_Chr5g0417701 | 45.139 | 144 | 77 | 1 | 13 | 156 | 6 | 147 | 7.12e-40 | 134 |
| Msa1347740 | MtrunA17_Chr3g0128801 | 44.521 | 146 | 79 | 1 | 11 | 156 | 10 | 153 | 1.68e-39 | 134 |
| Msa1347740 | MtrunA17_Chr7g0218741 | 50.000 | 128 | 62 | 1 | 29 | 156 | 26 | 151 | 1.84e-39 | 134 |
| Msa1347740 | MtrunA17_Chr7g0271001 | 45.333 | 150 | 75 | 3 | 13 | 156 | 4 | 152 | 2.55e-39 | 133 |
| Msa1347740 | MtrunA17_Chr3g0128791 | 48.800 | 125 | 62 | 1 | 32 | 156 | 31 | 153 | 4.03e-39 | 132 |
| Msa1347740 | MtrunA17_Chr3g0092071 | 48.438 | 128 | 64 | 1 | 29 | 156 | 22 | 147 | 5.69e-39 | 132 |
| Msa1347740 | MtrunA17_Chr4g0057091 | 43.750 | 144 | 80 | 1 | 13 | 156 | 17 | 159 | 4.74e-38 | 130 |
| Msa1347740 | MtrunA17_Chr7g0217661 | 45.517 | 145 | 64 | 3 | 17 | 156 | 6 | 140 | 2.37e-36 | 125 |
| Msa1347740 | MtrunA17_Chr5g0398271 | 41.667 | 144 | 83 | 1 | 13 | 156 | 18 | 160 | 4.20e-36 | 125 |
| Msa1347740 | MtrunA17_Chr8g0360721 | 53.271 | 107 | 48 | 1 | 50 | 156 | 16 | 120 | 9.48e-36 | 123 |
| Msa1347740 | MtrunA17_Chr7g0218761 | 53.271 | 107 | 48 | 1 | 50 | 156 | 7 | 111 | 1.70e-35 | 122 |
| Msa1347740 | MtrunA17_Chr3g0107311 | 48.800 | 125 | 62 | 1 | 32 | 156 | 32 | 154 | 5.06e-34 | 119 |
| Msa1347740 | MtrunA17_Chr3g0107291 | 48.000 | 125 | 63 | 1 | 32 | 156 | 38 | 160 | 2.96e-33 | 118 |
| Msa1347740 | MtrunA17_Chr6g0453341 | 43.056 | 144 | 67 | 3 | 11 | 149 | 12 | 145 | 1.33e-32 | 116 |
| Msa1347740 | MtrunA17_Chr1g0157061 | 45.000 | 120 | 61 | 3 | 39 | 156 | 24 | 140 | 6.52e-31 | 111 |
| Msa1347740 | MtrunA17_Chr3g0109801 | 45.588 | 136 | 61 | 6 | 31 | 156 | 52 | 184 | 6.87e-31 | 112 |
| Msa1347740 | MtrunA17_Chr4g0022851 | 42.636 | 129 | 70 | 2 | 1 | 129 | 1 | 125 | 1.17e-29 | 105 |
| Msa1347740 | MtrunA17_Chr8g0359981 | 49.425 | 87 | 35 | 4 | 73 | 156 | 1 | 81 | 1.17e-20 | 81.6 |
| Msa1347740 | MtrunA17_Chr2g0324221 | 34.266 | 143 | 70 | 6 | 23 | 156 | 26 | 153 | 6.22e-16 | 72.4 |
| Msa1347740 | MtrunA17_Chr4g0021641 | 36.029 | 136 | 65 | 5 | 29 | 156 | 38 | 159 | 1.26e-14 | 68.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1347740 | AT4G38210.1 | 62.069 | 145 | 51 | 2 | 14 | 156 | 12 | 154 | 5.28e-62 | 191 |
| Msa1347740 | AT5G02260.1 | 45.333 | 150 | 77 | 1 | 12 | 156 | 7 | 156 | 1.13e-46 | 152 |
| Msa1347740 | AT2G39700.1 | 44.737 | 152 | 84 | 0 | 5 | 156 | 4 | 155 | 1.44e-46 | 152 |
| Msa1347740 | AT2G37640.1 | 47.020 | 151 | 72 | 1 | 14 | 156 | 10 | 160 | 3.68e-46 | 151 |
| Msa1347740 | AT3G55500.1 | 46.309 | 149 | 76 | 1 | 12 | 156 | 10 | 158 | 1.83e-45 | 149 |
| Msa1347740 | AT2G28950.1 | 43.871 | 155 | 86 | 1 | 3 | 156 | 1 | 155 | 6.95e-45 | 148 |
| Msa1347740 | AT1G62980.1 | 45.139 | 144 | 78 | 1 | 13 | 156 | 12 | 154 | 2.26e-43 | 144 |
| Msa1347740 | AT2G37640.2 | 54.545 | 110 | 50 | 0 | 47 | 156 | 26 | 135 | 3.89e-42 | 140 |
| Msa1347740 | AT3G03220.1 | 54.762 | 126 | 56 | 1 | 31 | 156 | 39 | 163 | 9.75e-42 | 140 |
| Msa1347740 | AT1G69530.4 | 45.578 | 147 | 76 | 2 | 12 | 156 | 5 | 149 | 1.72e-41 | 138 |
| Msa1347740 | AT1G69530.2 | 45.578 | 147 | 76 | 2 | 12 | 156 | 5 | 149 | 2.66e-41 | 139 |
| Msa1347740 | AT1G69530.1 | 45.578 | 147 | 76 | 2 | 12 | 156 | 5 | 149 | 2.66e-41 | 139 |
| Msa1347740 | AT5G05290.1 | 47.407 | 135 | 69 | 1 | 22 | 156 | 22 | 154 | 3.48e-41 | 138 |
| Msa1347740 | AT1G69530.5 | 45.578 | 147 | 76 | 2 | 12 | 156 | 5 | 149 | 4.42e-41 | 138 |
| Msa1347740 | AT1G69530.3 | 45.578 | 147 | 76 | 2 | 12 | 156 | 5 | 149 | 5.47e-41 | 138 |
| Msa1347740 | AT2G40610.1 | 52.344 | 128 | 59 | 2 | 29 | 156 | 27 | 152 | 6.06e-41 | 137 |
| Msa1347740 | AT5G56320.1 | 43.226 | 155 | 82 | 3 | 2 | 156 | 3 | 151 | 1.42e-40 | 137 |
| Msa1347740 | AT5G56320.2 | 43.226 | 155 | 82 | 3 | 2 | 156 | 3 | 151 | 1.42e-40 | 137 |
| Msa1347740 | AT2G03090.1 | 44.872 | 156 | 82 | 3 | 1 | 156 | 1 | 152 | 1.52e-40 | 137 |
| Msa1347740 | AT5G39280.1 | 51.562 | 128 | 58 | 2 | 29 | 156 | 51 | 174 | 1.67e-40 | 137 |
| Msa1347740 | AT5G56320.3 | 44.755 | 143 | 77 | 1 | 14 | 156 | 11 | 151 | 4.89e-40 | 137 |
| Msa1347740 | AT5G39300.1 | 50.781 | 128 | 59 | 2 | 29 | 156 | 52 | 175 | 1.97e-39 | 134 |
| Msa1347740 | AT5G39290.1 | 50.781 | 128 | 59 | 2 | 29 | 156 | 55 | 178 | 5.12e-39 | 133 |
| Msa1347740 | AT5G39270.1 | 50.781 | 128 | 59 | 2 | 29 | 156 | 55 | 178 | 5.12e-39 | 133 |
| Msa1347740 | AT5G39310.1 | 51.200 | 125 | 57 | 2 | 32 | 156 | 90 | 210 | 4.72e-38 | 132 |
| Msa1347740 | AT4G01630.1 | 46.457 | 127 | 65 | 2 | 32 | 156 | 28 | 153 | 1.58e-35 | 124 |
| Msa1347740 | AT1G12560.1 | 42.177 | 147 | 81 | 3 | 12 | 156 | 15 | 159 | 5.96e-34 | 120 |
| Msa1347740 | AT1G20190.1 | 42.647 | 136 | 73 | 3 | 24 | 156 | 18 | 151 | 6.45e-34 | 119 |
| Msa1347740 | AT5G39260.1 | 42.038 | 157 | 76 | 4 | 6 | 156 | 14 | 161 | 8.59e-34 | 119 |
| Msa1347740 | AT1G26770.2 | 43.421 | 152 | 83 | 2 | 5 | 156 | 10 | 158 | 4.59e-32 | 115 |
| Msa1347740 | AT1G26770.1 | 43.709 | 151 | 82 | 2 | 6 | 156 | 1 | 148 | 4.68e-32 | 115 |
| Msa1347740 | AT3G29030.1 | 45.600 | 125 | 59 | 2 | 32 | 156 | 38 | 153 | 1.83e-30 | 110 |
| Msa1347740 | AT3G15370.1 | 41.497 | 147 | 77 | 4 | 13 | 156 | 8 | 148 | 9.08e-30 | 109 |
| Msa1347740 | AT3G15370.2 | 45.872 | 109 | 50 | 4 | 51 | 156 | 76 | 178 | 9.48e-26 | 99.4 |
| Msa1347740 | AT1G20190.2 | 46.237 | 93 | 45 | 3 | 67 | 156 | 2 | 92 | 5.22e-24 | 92.8 |
| Msa1347740 | AT2G20750.2 | 37.795 | 127 | 65 | 4 | 18 | 143 | 28 | 141 | 5.79e-13 | 64.3 |
| Msa1347740 | AT2G20750.1 | 37.008 | 127 | 66 | 4 | 18 | 143 | 28 | 141 | 7.61e-13 | 64.7 |
Find 39 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTAATTAATCTCTTATT+TGG | 0.148036 | tig0010031:+29584 | Msa1347740:three_prime_UTR |
| GATTTCTGTCCTCCTAATTT+TGG | 0.175976 | tig0010031:+29394 | Msa1347740:CDS |
| TAGAGATCCTTCTGTGTCTT+TGG | 0.259434 | tig0010031:-28993 | Msa1347740:intergenic |
| AAAATGAAATAATTTACTTT+AGG | 0.287826 | tig0010031:-28825 | Msa1347740:intergenic |
| TTTGGTCTCTCAGTTGATTA+TGG | 0.289936 | tig0010031:+29412 | Msa1347740:CDS |
| CTAAATGCTGTTATCTAAGA+TGG | 0.344241 | tig0010031:+28871 | Msa1347740:exon |
| TCAACTGAGAGACCAAAATT+AGG | 0.348503 | tig0010031:-29406 | Msa1347740:intergenic |
| GACAACTCAAAATGTTCTCT+TGG | 0.372662 | tig0010031:-29451 | Msa1347740:intergenic |
| GCAGAAGGAGCTTGTGGTTA+TGG | 0.372980 | tig0010031:+29214 | Msa1347740:intron |
| ACAGAAGGATCTCTAATTAC+AGG | 0.385780 | tig0010031:+29001 | Msa1347740:CDS |
| TTATTCCCGTTCAATATAGA+AGG | 0.389617 | tig0010031:+29515 | Msa1347740:CDS |
| TTGCTTACAAAGATCAAGAA+TGG | 0.419745 | tig0010031:+28948 | Msa1347740:CDS |
| ATCTACCTTCTATATTGAAC+GGG | 0.431748 | tig0010031:-29520 | Msa1347740:intergenic |
| CAAGCATACACCACAAGATA+TGG | 0.436575 | tig0010031:-29342 | Msa1347740:intergenic |
| GAGGCAATGATGCTAGGAAA+AGG | 0.499306 | tig0010031:-28781 | Msa1347740:intergenic |
| TGCATTTGCTGAAATTGCTA+AGG | 0.506123 | tig0010031:+29480 | Msa1347740:CDS |
| TCTCAGTTGATTATGGTGGT+TGG | 0.506701 | tig0010031:+29419 | Msa1347740:CDS |
| TAAATGCTGTTATCTAAGAT+GGG | 0.517060 | tig0010031:+28872 | Msa1347740:exon |
| GATCTTCACAAAGCTAGCTA+TGG | 0.521811 | tig0010031:+29238 | Msa1347740:CDS |
| CATATCTTGTGGTGTATGCT+TGG | 0.525681 | tig0010031:+29343 | Msa1347740:CDS |
| GTCTTTGGCATAAGTTGCAG+TGG | 0.528308 | tig0010031:-28978 | Msa1347740:intergenic |
| TATCTACCTTCTATATTGAA+CGG | 0.536318 | tig0010031:-29521 | Msa1347740:intergenic |
| GCATTTGCTGAAATTGCTAA+GGG | 0.541056 | tig0010031:+29481 | Msa1347740:CDS |
| ATATGTGAGGCAATGATGCT+AGG | 0.552240 | tig0010031:-28787 | None:intergenic |
| TAGGAGGTATCCTGATATGT+AGG | 0.552781 | tig0010031:+28744 | None:intergenic |
| AGGCAATGATGCTAGGAAAA+GGG | 0.552818 | tig0010031:-28780 | Msa1347740:intergenic |
| TTCAACAGAGGGAGTACATG+TGG | 0.560849 | tig0010031:+29292 | Msa1347740:CDS |
| AGCTATGGAAAACATAGTGT+TGG | 0.560850 | tig0010031:+29253 | Msa1347740:CDS |
| GGTCTCTCAGTTGATTATGG+TGG | 0.580447 | tig0010031:+29415 | Msa1347740:CDS |
| TCAACAGAGGGAGTACATGT+GGG | 0.614475 | tig0010031:+29293 | Msa1347740:CDS |
| TAAAATCAAGTAGAGAAGTG+TGG | 0.616273 | tig0010031:-28906 | Msa1347740:intergenic |
| ACTGAGAGACCAAAATTAGG+AGG | 0.626412 | tig0010031:-29403 | Msa1347740:intergenic |
| GTGGCAGTAACAATAGCAGA+AGG | 0.649406 | tig0010031:-29370 | Msa1347740:intergenic |
| CAACAGAGGGAGTACATGTG+GGG | 0.668401 | tig0010031:+29294 | Msa1347740:CDS |
| ACTTATGCCAAAGACACAGA+AGG | 0.668875 | tig0010031:+28986 | Msa1347740:CDS |
| CATTTGCTGAAATTGCTAAG+GGG | 0.677827 | tig0010031:+29482 | Msa1347740:CDS |
| ATTAGGAGGACAGAAATCAG+TGG | 0.688419 | tig0010031:-29389 | Msa1347740:intergenic |
| TGTGATGCAGAAGGAGCTTG+TGG | 0.691735 | tig0010031:+29208 | Msa1347740:intron |
| GATGTGTTGACCATATCTTG+TGG | 0.783191 | tig0010031:+29332 | Msa1347740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGAAATAATTTACTTT+AGG | - | tig0010031:28828-28847 | None:intergenic | 10.0% |
| !!! | ATTTTTTTATAAGTGTTTTT+GGG | + | tig0010031:29545-29564 | Msa1347740:three_prime_UTR | 10.0% |
| !! | AAAATGAAATAATTTACTTT+AGG | - | tig0010031:28828-28847 | Msa1347740:intergenic | 10.0% |
| !!! | ATTTTTTTATAAGTGTTTTT+GGG | + | tig0010031:29545-29564 | Msa1347740:three_prime_UTR | 10.0% |
| !!! | ATCATGTACATTTTTTTTTT+TGG | - | tig0010031:29177-29196 | Msa1347740:intergenic | 15.0% |
| !!! | GATTTTTTTATAAGTGTTTT+TGG | + | tig0010031:29544-29563 | Msa1347740:three_prime_UTR | 15.0% |
| !! | AACTTAATTAATCTCTTATT+TGG | + | tig0010031:29584-29603 | Msa1347740:three_prime_UTR | 15.0% |
| !!! | ATCATGTACATTTTTTTTTT+TGG | - | tig0010031:29177-29196 | Msa1347740:intergenic | 15.0% |
| !!! | GATTTTTTTATAAGTGTTTT+TGG | + | tig0010031:29544-29563 | Msa1347740:three_prime_UTR | 15.0% |
| !! | AACTTAATTAATCTCTTATT+TGG | + | tig0010031:29584-29603 | Msa1347740:three_prime_UTR | 15.0% |
| !!! | ATGTACATTTTTTTTTTTGG+TGG | - | tig0010031:29174-29193 | Msa1347740:intergenic | 20.0% |
| !!! | ATGTACATTTTTTTTTTTGG+TGG | - | tig0010031:29174-29193 | Msa1347740:intergenic | 20.0% |
| !! | TAAATGCTGTTATCTAAGAT+GGG | + | tig0010031:28872-28891 | Msa1347740:exon | 25.0% |
| !!! | TACATTTTTTTTTTTGGTGG+TGG | - | tig0010031:29171-29190 | Msa1347740:intergenic | 25.0% |
| ! | TATCTACCTTCTATATTGAA+CGG | - | tig0010031:29524-29543 | Msa1347740:intergenic | 25.0% |
| !! | TAAATGCTGTTATCTAAGAT+GGG | + | tig0010031:28872-28891 | Msa1347740:exon | 25.0% |
| !!! | TACATTTTTTTTTTTGGTGG+TGG | - | tig0010031:29171-29190 | Msa1347740:intergenic | 25.0% |
| ! | TATCTACCTTCTATATTGAA+CGG | - | tig0010031:29524-29543 | Msa1347740:intergenic | 25.0% |
| ! | TTGTGTTTTTCTCATATGTG+AGG | - | tig0010031:28803-28822 | None:intergenic | 30.0% |
| CTAAATGCTGTTATCTAAGA+TGG | + | tig0010031:28871-28890 | Msa1347740:exon | 30.0% | |
| TAAAATCAAGTAGAGAAGTG+TGG | - | tig0010031:28909-28928 | Msa1347740:intergenic | 30.0% | |
| TTGCTTACAAAGATCAAGAA+TGG | + | tig0010031:28948-28967 | Msa1347740:CDS | 30.0% | |
| CATAATATATGCAAGATCCA+GGG | + | tig0010031:29133-29152 | Msa1347740:intron | 30.0% | |
| !!! | TTTTTTTTTTTGGTGGTGGT+CGG | - | tig0010031:29167-29186 | Msa1347740:intergenic | 30.0% |
| TTATTCCCGTTCAATATAGA+AGG | + | tig0010031:29515-29534 | Msa1347740:CDS | 30.0% | |
| ATCTACCTTCTATATTGAAC+GGG | - | tig0010031:29523-29542 | Msa1347740:intergenic | 30.0% | |
| !!! | AAGTGTTTTTGGGATGTTTT+TGG | + | tig0010031:29555-29574 | Msa1347740:three_prime_UTR | 30.0% |
| ! | TTGTGTTTTTCTCATATGTG+AGG | - | tig0010031:28803-28822 | Msa1347740:intergenic | 30.0% |
| CTAAATGCTGTTATCTAAGA+TGG | + | tig0010031:28871-28890 | Msa1347740:exon | 30.0% | |
| TAAAATCAAGTAGAGAAGTG+TGG | - | tig0010031:28909-28928 | Msa1347740:intergenic | 30.0% | |
| TTGCTTACAAAGATCAAGAA+TGG | + | tig0010031:28948-28967 | Msa1347740:CDS | 30.0% | |
| CATAATATATGCAAGATCCA+GGG | + | tig0010031:29133-29152 | Msa1347740:intron | 30.0% | |
| !!! | TTTTTTTTTTTGGTGGTGGT+CGG | - | tig0010031:29167-29186 | Msa1347740:intergenic | 30.0% |
| TTATTCCCGTTCAATATAGA+AGG | + | tig0010031:29515-29534 | Msa1347740:CDS | 30.0% | |
| ATCTACCTTCTATATTGAAC+GGG | - | tig0010031:29523-29542 | Msa1347740:intergenic | 30.0% | |
| !!! | AAGTGTTTTTGGGATGTTTT+TGG | + | tig0010031:29555-29574 | Msa1347740:three_prime_UTR | 30.0% |
| ACAGAAGGATCTCTAATTAC+AGG | + | tig0010031:29001-29020 | Msa1347740:CDS | 35.0% | |
| ! | ATGTTGCTGTTATGAACCAA+AGG | - | tig0010031:29043-29062 | Msa1347740:intergenic | 35.0% |
| GCATAATATATGCAAGATCC+AGG | + | tig0010031:29132-29151 | Msa1347740:intron | 35.0% | |
| !!! | TTTTTTTTTTGGTGGTGGTC+GGG | - | tig0010031:29166-29185 | Msa1347740:intergenic | 35.0% |
| AGCTATGGAAAACATAGTGT+TGG | + | tig0010031:29253-29272 | Msa1347740:CDS | 35.0% | |
| ! | AGCACAATTTTGTTCAACAG+AGG | + | tig0010031:29280-29299 | Msa1347740:CDS | 35.0% |
| ! | GCACAATTTTGTTCAACAGA+GGG | + | tig0010031:29281-29300 | Msa1347740:CDS | 35.0% |
| ! | GATTTCTGTCCTCCTAATTT+TGG | + | tig0010031:29394-29413 | Msa1347740:CDS | 35.0% |
| TCAACTGAGAGACCAAAATT+AGG | - | tig0010031:29409-29428 | Msa1347740:intergenic | 35.0% | |
| TTTGGTCTCTCAGTTGATTA+TGG | + | tig0010031:29412-29431 | Msa1347740:CDS | 35.0% | |
| GACAACTCAAAATGTTCTCT+TGG | - | tig0010031:29454-29473 | Msa1347740:intergenic | 35.0% | |
| !!! | AGAACATTTTGAGTTGTCAC+TGG | + | tig0010031:29456-29475 | Msa1347740:CDS | 35.0% |
| ! | TGCATTTGCTGAAATTGCTA+AGG | + | tig0010031:29480-29499 | Msa1347740:CDS | 35.0% |
| ! | GCATTTGCTGAAATTGCTAA+GGG | + | tig0010031:29481-29500 | Msa1347740:CDS | 35.0% |
| ! | CATTTGCTGAAATTGCTAAG+GGG | + | tig0010031:29482-29501 | Msa1347740:CDS | 35.0% |
| ACAGAAGGATCTCTAATTAC+AGG | + | tig0010031:29001-29020 | Msa1347740:CDS | 35.0% | |
| ! | ATGTTGCTGTTATGAACCAA+AGG | - | tig0010031:29043-29062 | Msa1347740:intergenic | 35.0% |
| GCATAATATATGCAAGATCC+AGG | + | tig0010031:29132-29151 | Msa1347740:intron | 35.0% | |
| !!! | TTTTTTTTTTGGTGGTGGTC+GGG | - | tig0010031:29166-29185 | Msa1347740:intergenic | 35.0% |
| AGCTATGGAAAACATAGTGT+TGG | + | tig0010031:29253-29272 | Msa1347740:CDS | 35.0% | |
| ! | AGCACAATTTTGTTCAACAG+AGG | + | tig0010031:29280-29299 | Msa1347740:CDS | 35.0% |
| ! | GCACAATTTTGTTCAACAGA+GGG | + | tig0010031:29281-29300 | Msa1347740:CDS | 35.0% |
| ! | GATTTCTGTCCTCCTAATTT+TGG | + | tig0010031:29394-29413 | Msa1347740:CDS | 35.0% |
| TCAACTGAGAGACCAAAATT+AGG | - | tig0010031:29409-29428 | Msa1347740:intergenic | 35.0% | |
| TTTGGTCTCTCAGTTGATTA+TGG | + | tig0010031:29412-29431 | Msa1347740:CDS | 35.0% | |
| GACAACTCAAAATGTTCTCT+TGG | - | tig0010031:29454-29473 | Msa1347740:intergenic | 35.0% | |
| !!! | AGAACATTTTGAGTTGTCAC+TGG | + | tig0010031:29456-29475 | Msa1347740:CDS | 35.0% |
| ! | TGCATTTGCTGAAATTGCTA+AGG | + | tig0010031:29480-29499 | Msa1347740:CDS | 35.0% |
| ! | GCATTTGCTGAAATTGCTAA+GGG | + | tig0010031:29481-29500 | Msa1347740:CDS | 35.0% |
| ! | CATTTGCTGAAATTGCTAAG+GGG | + | tig0010031:29482-29501 | Msa1347740:CDS | 35.0% |
| AGGCAATGATGCTAGGAAAA+GGG | - | tig0010031:28783-28802 | None:intergenic | 40.0% | |
| ATATGTGAGGCAATGATGCT+AGG | - | tig0010031:28790-28809 | None:intergenic | 40.0% | |
| ACTTATGCCAAAGACACAGA+AGG | + | tig0010031:28986-29005 | Msa1347740:CDS | 40.0% | |
| TAGAGATCCTTCTGTGTCTT+TGG | - | tig0010031:28996-29015 | Msa1347740:intergenic | 40.0% | |
| ! | TACTTTTCTTGCTCCTCCTT+TGG | + | tig0010031:29024-29043 | Msa1347740:intron | 40.0% |
| ! | TTGCTGTTATGAACCAAAGG+AGG | - | tig0010031:29040-29059 | Msa1347740:intergenic | 40.0% |
| !!! | TTTTTTTTTGGTGGTGGTCG+GGG | - | tig0010031:29165-29184 | Msa1347740:intergenic | 40.0% |
| GATCTTCACAAAGCTAGCTA+TGG | + | tig0010031:29238-29257 | Msa1347740:CDS | 40.0% | |
| ! | GATGTGTTGACCATATCTTG+TGG | + | tig0010031:29332-29351 | Msa1347740:CDS | 40.0% |
| CAAGCATACACCACAAGATA+TGG | - | tig0010031:29345-29364 | Msa1347740:intergenic | 40.0% | |
| CATATCTTGTGGTGTATGCT+TGG | + | tig0010031:29343-29362 | Msa1347740:CDS | 40.0% | |
| ATTAGGAGGACAGAAATCAG+TGG | - | tig0010031:29392-29411 | Msa1347740:intergenic | 40.0% | |
| ACTGAGAGACCAAAATTAGG+AGG | - | tig0010031:29406-29425 | Msa1347740:intergenic | 40.0% | |
| TCTCAGTTGATTATGGTGGT+TGG | + | tig0010031:29419-29438 | Msa1347740:CDS | 40.0% | |
| AGGCAATGATGCTAGGAAAA+GGG | - | tig0010031:28783-28802 | Msa1347740:intergenic | 40.0% | |
| ATATGTGAGGCAATGATGCT+AGG | - | tig0010031:28790-28809 | Msa1347740:intergenic | 40.0% | |
| ACTTATGCCAAAGACACAGA+AGG | + | tig0010031:28986-29005 | Msa1347740:CDS | 40.0% | |
| TAGAGATCCTTCTGTGTCTT+TGG | - | tig0010031:28996-29015 | Msa1347740:intergenic | 40.0% | |
| ! | TACTTTTCTTGCTCCTCCTT+TGG | + | tig0010031:29024-29043 | Msa1347740:intron | 40.0% |
| ! | TTGCTGTTATGAACCAAAGG+AGG | - | tig0010031:29040-29059 | Msa1347740:intergenic | 40.0% |
| !!! | TTTTTTTTTGGTGGTGGTCG+GGG | - | tig0010031:29165-29184 | Msa1347740:intergenic | 40.0% |
| GATCTTCACAAAGCTAGCTA+TGG | + | tig0010031:29238-29257 | Msa1347740:CDS | 40.0% | |
| ! | GATGTGTTGACCATATCTTG+TGG | + | tig0010031:29332-29351 | Msa1347740:CDS | 40.0% |
| CAAGCATACACCACAAGATA+TGG | - | tig0010031:29345-29364 | Msa1347740:intergenic | 40.0% | |
| CATATCTTGTGGTGTATGCT+TGG | + | tig0010031:29343-29362 | Msa1347740:CDS | 40.0% | |
| ATTAGGAGGACAGAAATCAG+TGG | - | tig0010031:29392-29411 | Msa1347740:intergenic | 40.0% | |
| ACTGAGAGACCAAAATTAGG+AGG | - | tig0010031:29406-29425 | Msa1347740:intergenic | 40.0% | |
| TCTCAGTTGATTATGGTGGT+TGG | + | tig0010031:29419-29438 | Msa1347740:CDS | 40.0% | |
| GAGGCAATGATGCTAGGAAA+AGG | - | tig0010031:28784-28803 | None:intergenic | 45.0% | |
| GTCTTTGGCATAAGTTGCAG+TGG | - | tig0010031:28981-29000 | Msa1347740:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | + | tig0010031:29104-29123 | Msa1347740:intron | 45.0% |
| TTGTGTGCATGTGATGCAGA+AGG | + | tig0010031:29199-29218 | Msa1347740:intron | 45.0% | |
| ! | TTCAACAGAGGGAGTACATG+TGG | + | tig0010031:29292-29311 | Msa1347740:CDS | 45.0% |
| ! | TCAACAGAGGGAGTACATGT+GGG | + | tig0010031:29293-29312 | Msa1347740:CDS | 45.0% |
| GTGGCAGTAACAATAGCAGA+AGG | - | tig0010031:29373-29392 | Msa1347740:intergenic | 45.0% | |
| GGTCTCTCAGTTGATTATGG+TGG | + | tig0010031:29415-29434 | Msa1347740:CDS | 45.0% | |
| GAGGCAATGATGCTAGGAAA+AGG | - | tig0010031:28784-28803 | Msa1347740:intergenic | 45.0% | |
| GTCTTTGGCATAAGTTGCAG+TGG | - | tig0010031:28981-29000 | Msa1347740:intergenic | 45.0% | |
| ! | TGAGCTTAGCTCAGTTGGTA+TGG | + | tig0010031:29104-29123 | Msa1347740:intron | 45.0% |
| TTGTGTGCATGTGATGCAGA+AGG | + | tig0010031:29199-29218 | Msa1347740:intron | 45.0% | |
| ! | TTCAACAGAGGGAGTACATG+TGG | + | tig0010031:29292-29311 | Msa1347740:CDS | 45.0% |
| ! | TCAACAGAGGGAGTACATGT+GGG | + | tig0010031:29293-29312 | Msa1347740:CDS | 45.0% |
| GTGGCAGTAACAATAGCAGA+AGG | - | tig0010031:29373-29392 | Msa1347740:intergenic | 45.0% | |
| GGTCTCTCAGTTGATTATGG+TGG | + | tig0010031:29415-29434 | Msa1347740:CDS | 45.0% | |
| CCAACTGAGCTAAGCTCACA+AGG | - | tig0010031:29102-29121 | Msa1347740:intergenic | 50.0% | |
| CCTTGTGAGCTTAGCTCAGT+TGG | + | tig0010031:29099-29118 | Msa1347740:intron | 50.0% | |
| TGTGATGCAGAAGGAGCTTG+TGG | + | tig0010031:29208-29227 | Msa1347740:intron | 50.0% | |
| GCAGAAGGAGCTTGTGGTTA+TGG | + | tig0010031:29214-29233 | Msa1347740:intron | 50.0% | |
| ! | CAACAGAGGGAGTACATGTG+GGG | + | tig0010031:29294-29313 | Msa1347740:CDS | 50.0% |
| CCAACTGAGCTAAGCTCACA+AGG | - | tig0010031:29102-29121 | Msa1347740:intergenic | 50.0% | |
| CCTTGTGAGCTTAGCTCAGT+TGG | + | tig0010031:29099-29118 | Msa1347740:intron | 50.0% | |
| TGTGATGCAGAAGGAGCTTG+TGG | + | tig0010031:29208-29227 | Msa1347740:intron | 50.0% | |
| GCAGAAGGAGCTTGTGGTTA+TGG | + | tig0010031:29214-29233 | Msa1347740:intron | 50.0% | |
| ! | CAACAGAGGGAGTACATGTG+GGG | + | tig0010031:29294-29313 | Msa1347740:CDS | 50.0% |
| GGTGGTCGGGGTTTGAACCC+TGG | - | tig0010031:29153-29172 | Msa1347740:intergenic | 65.0% | |
| GGTGGTCGGGGTTTGAACCC+TGG | - | tig0010031:29153-29172 | Msa1347740:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0010031 | gene | 28757 | 29656 | 28757 | ID=Msa1347740;Name=Msa1347740 |
| tig0010031 | mRNA | 28757 | 29656 | 28757 | ID=Msa1347740-mRNA-1;Parent=Msa1347740;Name=Msa1347740-mRNA-1;_AED=0.00;_eAED=0.00;_QI=118|1|1|1|1|1|2|116|156 |
| tig0010031 | exon | 28757 | 29022 | 28757 | ID=Msa1347740-mRNA-1:exon:6017;Parent=Msa1347740-mRNA-1 |
| tig0010031 | exon | 29218 | 29656 | 29218 | ID=Msa1347740-mRNA-1:exon:6018;Parent=Msa1347740-mRNA-1 |
| tig0010031 | five_prime_UTR | 28757 | 28874 | 28757 | ID=Msa1347740-mRNA-1:five_prime_utr;Parent=Msa1347740-mRNA-1 |
| tig0010031 | CDS | 28875 | 29022 | 28875 | ID=Msa1347740-mRNA-1:cds;Parent=Msa1347740-mRNA-1 |
| tig0010031 | CDS | 29218 | 29540 | 29218 | ID=Msa1347740-mRNA-1:cds;Parent=Msa1347740-mRNA-1 |
| tig0010031 | three_prime_UTR | 29541 | 29656 | 29541 | ID=Msa1347740-mRNA-1:three_prime_utr;Parent=Msa1347740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
