AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1316330


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316330 MtrunA17_Chr8g0346421 99.569 232 1 0 1 232 1 232 2.74e-171 470
Msa1316330 MtrunA17_Chr7g0275991 82.710 214 35 1 21 232 15 228 7.47e-130 365
Msa1316330 MtrunA17_Chr8g0381841 66.986 209 64 2 18 222 9 216 1.95e-97 283
Msa1316330 MtrunA17_Chr3g0123821 64.977 217 68 2 18 230 8 220 1.81e-96 281
Msa1316330 MtrunA17_Chr1g0174281 66.832 202 60 2 18 213 7 207 6.59e-94 274
Msa1316330 MtrunA17_Chr7g0231131 66.500 200 63 1 18 213 7 206 9.85e-92 269
Msa1316330 MtrunA17_Chr2g0283131 58.333 216 88 1 17 232 4 217 4.84e-88 259
Msa1316330 MtrunA17_Chr4g0046261 57.407 216 90 1 17 232 4 217 2.21e-87 257
Msa1316330 MtrunA17_Chr2g0276941 61.692 201 75 1 20 218 9 209 3.16e-86 254
Msa1316330 MtrunA17_Chr4g0040781 56.019 216 93 1 17 232 4 217 1.44e-85 253
Msa1316330 MtrunA17_Chr4g0032201 61.458 192 74 0 17 208 3 194 2.71e-85 252
Msa1316330 MtrunA17_Chr2g0315551 56.422 218 87 3 17 231 4 216 6.04e-84 249
Msa1316330 MtrunA17_Chr3g0112681 56.164 219 86 2 17 231 3 215 7.59e-84 248
Msa1316330 MtrunA17_Chr2g0319951 55.349 215 95 1 17 231 4 217 1.95e-82 245
Msa1316330 MtrunA17_Chr2g0325091 55.140 214 93 1 19 232 4 214 3.05e-81 242
Msa1316330 MtrunA17_Chr8g0351861 54.378 217 92 2 20 230 10 225 1.92e-79 238
Msa1316330 MtrunA17_Chr1g0189361 59.239 184 74 1 20 202 7 190 3.42e-76 229
Msa1316330 MtrunA17_Chr7g0214241 51.456 206 99 1 25 230 14 218 2.54e-72 219
Msa1316330 MtrunA17_Chr6g0482721 49.309 217 100 2 19 231 5 215 1.81e-70 214
Msa1316330 MtrunA17_Chr7g0234201 51.456 206 96 2 25 230 12 213 5.04e-70 213
Msa1316330 MtrunA17_Chr8g0392931 54.749 179 81 0 19 197 7 185 7.62e-65 200
Msa1316330 MtrunA17_Chr8g0349711 52.761 163 77 0 25 187 5 167 4.67e-59 185
Msa1316330 MtrunA17_Chr2g0290891 53.797 158 73 0 25 182 5 162 2.12e-57 181
Msa1316330 MtrunA17_Chr6g0458081 51.220 164 80 0 24 187 4 167 3.50e-56 178
Msa1316330 MtrunA17_Chr4g0055651 42.929 198 113 0 19 216 1 198 4.94e-56 177
Msa1316330 MtrunA17_Chr2g0276931 46.032 189 101 1 24 211 7 195 9.56e-55 174
Msa1316330 MtrunA17_Chr8g0335471 43.719 199 111 1 19 216 1 199 1.70e-54 173
Msa1316330 MtrunA17_Chr7g0250531 42.424 198 114 0 19 216 1 198 2.14e-53 171
Msa1316330 MtrunA17_Chr8g0349681 51.534 163 79 0 25 187 383 545 2.35e-52 177
Msa1316330 MtrunA17_Chr8g0349681 49.080 163 83 0 25 187 174 336 2.77e-50 172
Msa1316330 MtrunA17_Chr8g0349681 50.641 156 77 0 25 180 12 167 1.09e-49 171
Msa1316330 MtrunA17_Chr1g0182321 46.667 165 87 1 24 187 13 177 6.85e-51 164
Msa1316330 MtrunA17_Chr7g0263071 46.667 165 87 1 24 187 13 177 1.19e-50 164
Msa1316330 MtrunA17_Chr1g0212521 46.667 165 87 1 24 187 13 177 1.45e-50 164
Msa1316330 MtrunA17_Chr4g0030911 46.667 165 87 1 24 187 13 177 1.62e-50 164
Msa1316330 MtrunA17_Chr1g0182301 46.061 165 88 1 24 187 13 177 2.33e-50 163
Msa1316330 MtrunA17_Chr8g0384311 44.706 170 91 3 20 187 7 175 6.63e-46 152
Msa1316330 MtrunA17_Chr3g0109721 41.899 179 99 1 28 206 12 185 7.58e-46 151
Msa1316330 MtrunA17_Chr2g0327911 42.353 170 96 2 20 187 9 178 8.72e-46 151
Msa1316330 MtrunA17_Chr5g0433561 41.899 179 99 1 28 206 12 185 1.19e-45 150
Msa1316330 MtrunA17_Chr1g0159481 46.429 168 87 3 22 187 13 179 1.21e-45 151
Msa1316330 MtrunA17_Chr1g0199331 44.118 170 90 2 28 196 33 198 9.25e-44 145
Msa1316330 MtrunA17_Chr3g0123971 42.038 157 91 0 27 183 10 166 1.14e-42 143
Msa1316330 MtrunA17_Chr3g0130271 43.182 176 96 4 15 187 1 175 1.88e-42 143
Msa1316330 MtrunA17_Chr5g0400131 34.951 206 126 1 27 232 10 207 7.36e-42 141
Msa1316330 MtrunA17_Chr8g0390561 42.500 160 92 0 28 187 11 170 8.40e-42 140
Msa1316330 MtrunA17_Chr7g0265001 45.679 162 86 2 24 183 14 175 1.15e-41 141
Msa1316330 MtrunA17_Chr8g0382221 41.401 157 92 0 27 183 10 166 1.84e-41 140
Msa1316330 MtrunA17_Chr4g0055081 38.854 157 96 0 27 183 10 166 1.32e-40 138
Msa1316330 MtrunA17_Chr1g0180291 44.444 171 92 3 24 192 12 181 3.08e-40 137
Msa1316330 MtrunA17_Chr1g0197331 44.186 172 93 3 24 192 13 184 9.97e-37 128
Msa1316330 MtrunA17_Chr4g0034871 33.937 221 124 6 19 232 1 206 1.05e-32 117
Msa1316330 MtrunA17_Chr8g0383261 34.579 214 117 6 26 232 12 209 4.23e-32 116
Msa1316330 MtrunA17_Chr6g0466301 37.576 165 96 3 26 183 8 172 8.54e-32 115
Msa1316330 MtrunA17_Chr6g0465491 37.576 165 96 3 26 183 8 172 8.54e-32 115
Msa1316330 MtrunA17_Chr1g0201121 37.423 163 95 3 26 181 8 170 7.99e-31 113
Msa1316330 MtrunA17_Chr2g0331691 37.654 162 94 3 26 180 10 171 3.32e-30 111
Msa1316330 MtrunA17_Chr4g0004661 33.032 221 127 6 19 232 57 263 2.52e-29 110
Msa1316330 MtrunA17_Chr3g0138121 30.198 202 134 5 20 220 6 201 1.07e-21 89.4
Msa1316330 MtrunA17_Chr3g0138111 33.136 169 109 4 20 187 6 171 1.08e-21 89.4
Msa1316330 MtrunA17_Chr3g0138101 33.136 169 109 4 20 187 6 171 1.12e-21 89.4
Msa1316330 MtrunA17_Chr4g0046211 38.655 119 70 3 28 145 8 124 1.66e-20 84.3
Msa1316330 MtrunA17_Chr6g0466161 34.247 146 89 3 43 181 7 152 1.77e-20 85.9
Msa1316330 MtrunA17_Chr6g0465471 34.247 146 89 3 43 181 7 152 2.01e-20 85.9
Msa1316330 MtrunA17_Chr4g0037021 39.496 119 69 3 28 145 8 124 3.08e-20 85.1
Msa1316330 MtrunA17_Chr5g0405791 38.655 119 70 3 28 145 8 124 3.56e-20 84.7
Msa1316330 MtrunA17_Chr2g0325101 33.939 165 95 5 28 180 8 170 3.79e-20 84.7
Msa1316330 MtrunA17_Chr3g0117931 35.758 165 92 6 28 180 10 172 7.29e-20 84.3
Msa1316330 MtrunA17_Chr8g0371501 31.522 184 97 7 28 204 8 169 7.96e-20 84.0
Msa1316330 MtrunA17_Chr6g0486041 31.604 212 116 8 28 232 8 197 1.14e-19 84.0
Msa1316330 MtrunA17_Chr6g0466431 36.364 99 54 1 26 124 8 97 6.72e-16 70.9
Msa1316330 MtrunA17_Chr6g0465611 36.364 99 54 1 26 124 8 97 6.72e-16 70.9
Msa1316330 MtrunA17_Chr1g0178291 32.335 167 106 3 29 195 431 590 1.45e-14 72.4
Msa1316330 MtrunA17_Chr2g0331841 43.836 73 40 1 95 166 2 74 1.79e-11 58.9
Msa1316330 MtrunA17_Chr5g0443631 27.322 183 118 5 5 180 88 262 5.12e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316330 AT1G01200.1 73.077 234 59 3 2 232 5 237 1.90e-118 337
Msa1316330 AT5G65270.1 66.019 206 62 2 18 217 9 212 2.47e-97 283
Msa1316330 AT5G47960.1 67.453 212 63 3 14 220 3 213 1.35e-95 279
Msa1316330 AT3G12160.1 66.667 207 61 2 18 218 7 211 2.18e-95 278
Msa1316330 AT4G39990.1 64.151 212 69 4 22 230 13 220 1.16e-92 271
Msa1316330 AT4G18800.1 58.796 216 82 2 17 231 4 213 2.79e-87 257
Msa1316330 AT5G60860.1 56.744 215 91 1 17 231 4 216 1.68e-86 256
Msa1316330 AT3G15060.1 56.279 215 92 1 17 231 4 216 1.65e-85 253
Msa1316330 AT1G16920.1 57.407 216 87 2 17 231 4 215 4.27e-85 252
Msa1316330 AT1G09630.1 59.204 201 80 1 20 218 6 206 6.19e-85 251
Msa1316330 AT1G28550.1 57.143 217 90 2 17 232 4 218 1.25e-84 251
Msa1316330 AT5G45750.1 56.944 216 88 2 17 231 4 215 1.40e-84 251
Msa1316330 AT1G07410.1 59.799 199 73 2 19 213 5 200 5.50e-84 249
Msa1316330 AT2G33870.1 55.300 217 94 2 17 232 4 218 6.28e-84 249
Msa1316330 AT5G59150.1 65.169 178 62 0 17 194 3 180 5.34e-83 247
Msa1316330 AT4G18430.1 54.884 215 95 1 17 231 4 216 2.87e-82 245
Msa1316330 AT3G46830.1 63.889 180 65 0 15 194 1 180 2.97e-82 245
Msa1316330 AT3G46830.2 63.889 180 65 0 15 194 1 180 2.97e-82 245
Msa1316330 AT1G06400.1 53.704 216 95 2 17 231 4 215 4.81e-80 239
Msa1316330 AT5G47520.1 60.694 173 68 0 24 196 12 184 1.67e-74 225
Msa1316330 AT1G05810.2 53.807 197 91 0 6 202 38 234 6.49e-73 223
Msa1316330 AT1G05810.1 56.216 185 81 0 18 202 4 188 3.79e-72 219
Msa1316330 AT1G73640.1 59.429 175 71 0 20 194 7 181 1.97e-71 218
Msa1316330 AT2G43130.1 54.595 185 84 0 18 202 4 188 2.27e-71 217
Msa1316330 AT3G07410.1 52.404 208 98 1 24 231 10 216 2.58e-71 217
Msa1316330 AT2G31680.1 55.307 179 80 0 24 202 10 188 2.93e-70 214
Msa1316330 AT1G18200.1 56.000 175 77 0 20 194 7 181 2.63e-67 207
Msa1316330 AT4G35860.1 49.180 183 89 1 24 202 4 186 6.33e-58 182
Msa1316330 AT4G17170.1 49.432 176 89 0 25 200 5 180 1.56e-57 182
Msa1316330 AT4G17160.1 48.333 180 93 0 25 204 5 184 2.12e-56 179
Msa1316330 AT1G02130.1 44.330 194 107 1 19 211 1 194 5.97e-55 175
Msa1316330 AT5G47200.1 42.424 198 114 0 19 216 1 198 4.82e-54 172
Msa1316330 AT5G59150.2 63.780 127 46 0 68 194 3 129 5.10e-54 171
Msa1316330 AT4G17530.1 42.424 198 114 0 19 216 1 198 1.47e-53 171
Msa1316330 AT3G11730.1 47.337 169 89 0 19 187 1 169 3.81e-53 170
Msa1316330 AT3G53610.2 46.667 165 87 1 24 187 13 177 2.71e-50 163
Msa1316330 AT3G53610.3 46.667 165 87 1 24 187 13 177 2.71e-50 163
Msa1316330 AT3G53610.1 46.667 165 87 1 24 187 13 177 2.71e-50 163
Msa1316330 AT3G46060.2 45.882 170 91 1 24 192 13 182 3.15e-50 163
Msa1316330 AT3G46060.3 45.882 170 91 1 24 192 13 182 3.15e-50 163
Msa1316330 AT3G46060.1 45.882 170 91 1 24 192 13 182 3.15e-50 163
Msa1316330 AT5G59840.1 46.061 165 88 1 24 187 13 177 1.14e-49 162
Msa1316330 AT3G09900.1 47.879 165 85 1 24 187 13 177 6.29e-49 160
Msa1316330 AT5G03520.1 47.273 165 86 1 24 187 13 177 6.97e-49 160
Msa1316330 AT4G19640.1 41.081 185 104 1 28 212 12 191 2.48e-48 158
Msa1316330 AT3G54840.1 47.337 169 84 2 28 195 35 199 4.60e-47 155
Msa1316330 AT3G54840.3 47.024 168 84 2 29 195 2 165 9.70e-47 153
Msa1316330 AT5G45130.1 43.558 163 92 0 28 190 12 174 2.30e-46 153
Msa1316330 AT3G54840.2 49.351 154 77 1 28 180 35 188 6.02e-46 151
Msa1316330 AT5G45130.2 43.478 161 91 0 30 190 22 182 4.11e-45 150
Msa1316330 AT1G43890.3 45.882 170 89 3 20 187 7 175 4.09e-44 147
Msa1316330 AT1G43890.1 45.882 170 89 3 20 187 7 175 4.09e-44 147
Msa1316330 AT1G43890.2 45.882 170 89 3 20 187 7 175 4.09e-44 147
Msa1316330 AT4G35860.2 50.360 139 65 1 68 202 2 140 1.02e-43 145
Msa1316330 AT5G10260.1 42.038 157 91 0 27 183 10 166 3.35e-43 145
Msa1316330 AT2G44610.1 40.764 157 93 0 27 183 10 166 8.42e-42 141
Msa1316330 AT2G22290.1 40.127 157 94 0 27 183 10 166 7.50e-40 136
Msa1316330 AT5G64990.1 40.127 157 94 0 27 183 8 164 7.96e-39 134
Msa1316330 AT4G39890.1 37.725 167 103 1 27 192 10 176 1.13e-38 134
Msa1316330 AT5G03530.2 43.860 171 93 3 24 192 11 180 1.49e-38 133
Msa1316330 AT5G03530.1 43.860 171 93 3 24 192 11 180 1.49e-38 133
Msa1316330 AT5G03520.2 46.875 128 67 1 61 187 40 167 3.59e-38 132
Msa1316330 AT4G19640.2 44.800 125 69 0 28 152 12 136 6.40e-37 127
Msa1316330 AT4G19640.3 43.511 131 74 0 28 158 12 142 2.02e-36 127
Msa1316330 AT5G64990.2 38.415 164 94 1 27 183 8 171 3.60e-36 127
Msa1316330 AT3G09910.3 41.848 184 94 4 24 195 11 193 7.07e-36 126
Msa1316330 AT3G09910.1 41.848 184 94 4 24 195 11 193 7.07e-36 126
Msa1316330 AT3G09910.2 41.848 184 94 4 24 195 11 193 7.07e-36 126
Msa1316330 AT3G09910.5 43.827 162 88 3 24 183 11 171 3.89e-35 124
Msa1316330 AT3G09910.4 43.827 162 88 3 24 183 11 171 3.89e-35 124
Msa1316330 AT3G18820.1 33.937 221 124 6 19 232 1 206 2.45e-32 117
Msa1316330 AT1G52280.1 38.824 170 95 4 19 180 1 169 1.06e-31 115
Msa1316330 AT2G21880.1 36.364 165 98 3 26 183 9 173 1.60e-30 112
Msa1316330 AT4G09720.1 38.554 166 93 4 26 183 8 172 2.06e-30 112
Msa1316330 AT3G16100.1 38.235 170 96 4 19 180 1 169 2.20e-30 112
Msa1316330 AT1G49300.2 37.427 171 98 4 19 181 1 170 2.66e-30 112
Msa1316330 AT1G49300.1 37.427 171 98 4 19 181 1 170 2.66e-30 112
Msa1316330 AT1G22740.1 35.294 170 103 3 19 181 1 170 3.15e-30 111
Msa1316330 AT4G09720.4 36.471 170 96 3 26 183 8 177 8.94e-30 110
Msa1316330 AT4G09720.3 35.227 176 96 3 26 183 8 183 9.66e-29 108
Msa1316330 AT5G39620.1 32.864 213 122 6 27 232 6 204 3.26e-27 103
Msa1316330 AT5G55080.1 32.716 162 106 2 26 187 13 171 3.33e-25 99.0
Msa1316330 AT5G46025.1 48.148 108 54 2 88 193 6 113 3.04e-24 93.6
Msa1316330 AT2G44690.1 35.294 187 104 6 28 199 20 204 9.25e-24 95.1
Msa1316330 AT2G21880.4 33.784 148 91 3 43 183 1 148 1.81e-22 90.9
Msa1316330 AT2G21880.3 33.784 148 91 3 43 183 1 148 1.81e-22 90.9
Msa1316330 AT4G09720.6 37.778 135 77 3 56 183 4 138 1.33e-21 88.2
Msa1316330 AT4G09720.5 37.778 135 77 3 56 183 4 138 1.33e-21 88.2
Msa1316330 AT4G09720.2 37.778 135 77 3 56 183 4 138 1.33e-21 88.2
Msa1316330 AT5G20020.1 33.136 169 109 4 20 187 6 171 1.37e-21 89.7
Msa1316330 AT5G55190.1 33.136 169 109 4 20 187 6 171 1.44e-21 89.4
Msa1316330 AT5G20010.1 33.136 169 109 4 20 187 6 171 1.72e-21 89.4
Msa1316330 AT4G35950.1 32.609 184 95 7 28 204 8 169 5.89e-21 87.4
Msa1316330 AT2G21880.2 31.515 165 98 4 26 183 9 165 9.17e-21 87.0
Msa1316330 AT4G35020.1 36.364 165 91 5 28 180 8 170 1.45e-20 86.3
Msa1316330 AT4G35020.2 36.364 165 91 5 28 180 8 170 1.45e-20 86.3
Msa1316330 AT4G35020.3 36.364 165 91 5 28 180 8 170 1.45e-20 86.3
Msa1316330 AT1G75840.1 34.545 165 94 5 28 180 8 170 2.27e-20 85.9
Msa1316330 AT2G17800.2 32.065 184 96 7 28 204 8 169 2.42e-20 85.5
Msa1316330 AT2G17800.1 32.065 184 96 7 28 204 8 169 2.42e-20 85.5
Msa1316330 AT1G20090.1 33.939 165 95 5 28 180 7 169 5.02e-20 84.7
Msa1316330 AT3G51300.1 38.655 119 70 3 28 145 8 124 2.14e-19 83.2
Msa1316330 AT4G28950.1 39.496 119 69 3 28 145 8 124 4.41e-19 82.4
Msa1316330 AT4G35020.4 39.474 114 66 3 28 140 8 119 1.36e-18 79.7
Msa1316330 AT4G35020.5 39.474 114 66 3 28 140 8 119 1.36e-18 79.7
Msa1316330 AT5G45970.1 37.815 119 71 3 28 145 8 124 5.30e-18 79.7
Msa1316330 AT5G62880.1 31.844 179 94 6 28 187 10 179 7.75e-18 79.3
Msa1316330 AT3G48040.1 33.939 165 95 5 28 180 10 172 1.04e-17 79.0
Msa1316330 AT5G62880.2 36.496 137 77 5 28 163 10 137 1.21e-17 78.2
Msa1316330 AT3G48040.2 38.017 121 72 3 28 147 10 128 3.52e-17 76.6
Msa1316330 AT4G08190.1 51.562 64 28 1 117 180 67 127 1.38e-12 63.2
Msa1316330 AT3G21700.3 25.967 181 118 6 8 180 93 265 1.40e-11 63.2
Msa1316330 AT3G51290.2 39.241 79 46 2 68 145 648 725 6.85e-11 62.0

Find 64 sgRNAs with CRISPR-Local

Find 262 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAAATAGATTATGTGTTTA+AGG 0.115067 8_4:-16602490 Msa1316330:CDS
CCTTAGGCATAATATGAAAA+AGG 0.236127 8_4:-16600632 Msa1316330:three_prime_UTR
TAATAGTGTAGTTTCTAAAA+AGG 0.249947 8_4:-16600845 Msa1316330:CDS
ACTAGGACTGTCACTATTAA+TGG 0.266282 8_4:-16602360 Msa1316330:CDS
GTGAAGGGGATTGCACTAAA+AGG 0.273863 8_4:-16600805 Msa1316330:CDS
TCAGAGACTTCAGCTCTTAC+TGG 0.284192 8_4:-16600910 Msa1316330:CDS
AGAGAGAGATGAACCTTTCT+TGG 0.285797 8_4:+16602301 None:intergenic
CATGTTAAAATATAATAATT+TGG 0.296932 8_4:+16602640 None:intergenic
TCTAAGATTGATGTAATTTC+AGG 0.313382 8_4:-16600781 Msa1316330:CDS
CTAAATGTTGGTCTTACCTT+AGG 0.315224 8_4:+16602668 None:intergenic
GCATACTATAGAGGTGCATT+AGG 0.336401 8_4:-16601126 Msa1316330:CDS
TTTGACTCAAAGTCAACTAT+TGG 0.357309 8_4:-16602396 Msa1316330:CDS
TGTAATTTCAGGTGCTGAAT+TGG 0.361003 8_4:-16600770 Msa1316330:CDS
CATACTATAGAGGTGCATTA+GGG 0.364580 8_4:-16601125 Msa1316330:CDS
AAGTAATTAAAGCTCAGATC+TGG 0.376078 8_4:-16602335 Msa1316330:CDS
AAATTATGATGTATTATGTA+AGG 0.393852 8_4:+16600606 None:intergenic
CAAGAAAATAGATTATGATA+TGG 0.396441 8_4:-16602517 Msa1316330:CDS
TAAATGTTGGTCTTACCTTA+GGG 0.404576 8_4:+16602669 None:intergenic
GTAGAAGCATGTAAGGGAAC+AGG 0.412486 8_4:+16602696 None:intergenic
ATGGTCAAAAGATTGTCTTT+TGG 0.423651 8_4:+16601080 None:intergenic
GGGGTCAGTAGAAGCATGTA+AGG 0.452026 8_4:+16602689 None:intergenic
TCTCTTGCTTCTTCTCACCC+TGG 0.465966 8_4:+16602547 None:intergenic
TCTTATAAAACCTTGGACCT+TGG 0.472463 8_4:+16602609 None:intergenic
GGTGAGAAGAAGCAAGAGAA+TGG 0.479409 8_4:-16602543 Msa1316330:CDS
GTGTTTAAGGTAGTTGTCAT+TGG 0.480881 8_4:-16602477 Msa1316330:CDS
TATTAAAATTGTTTCAACAT+TGG 0.494858 8_4:-16602751 Msa1316330:five_prime_UTR
GGGATACTGCTGGCCAAGAA+AGG 0.510670 8_4:-16602314 Msa1316330:intron
ACTAGACTCTTATAAAACCT+TGG 0.513126 8_4:+16602602 None:intergenic
TGAAGGGGATTGCACTAAAA+GGG 0.515906 8_4:-16600804 Msa1316330:CDS
AATTATGATGTATTATGTAA+GGG 0.517411 8_4:+16600607 None:intergenic
CCTAAGGCATGTAAAACTCT+AGG 0.519239 8_4:+16600648 None:intergenic
AGTAATTAAAGCTCAGATCT+GGG 0.523029 8_4:-16602334 Msa1316330:CDS
AGCTCTTACTGGTGTGAATG+TGG 0.537237 8_4:-16600899 Msa1316330:CDS
TGACCTTGTTGATTTGAGAA+TGG 0.538385 8_4:-16600983 Msa1316330:CDS
CATGTAAGGGAACAGGGAAA+AGG 0.544493 8_4:+16602703 None:intergenic
TCAATTGTGATCATGCTAGT+TGG 0.549084 8_4:-16601015 Msa1316330:CDS
GTAACAAGTGCATACTATAG+AGG 0.554671 8_4:-16601135 Msa1316330:CDS
TGTTGTGAAACCAAGGTCCA+AGG 0.562904 8_4:-16602619 Msa1316330:five_prime_UTR
TTGGAATGTGGTAATGTGAA+GGG 0.563064 8_4:-16600820 Msa1316330:CDS
TTTAACATGTTGTGAAACCA+AGG 0.563140 8_4:-16602626 Msa1316330:five_prime_UTR
TTGGTGTTGAATTTCAAACT+AGG 0.565498 8_4:-16602377 Msa1316330:CDS
GCTCAGATCTGGGATACTGC+TGG 0.566767 8_4:-16602324 Msa1316330:CDS
CCTCAACCCATTTAGCAACA+TGG 0.576266 8_4:+16601061 None:intergenic
ATTATGATGTATTATGTAAG+GGG 0.577676 8_4:+16600608 None:intergenic
CCATGTTGCTAAATGGGTTG+AGG 0.577838 8_4:-16601061 Msa1316330:CDS
AATTTGGTATGACTAAATGT+TGG 0.589533 8_4:+16602656 None:intergenic
CTTACTGGTGTGAATGTGGA+GGG 0.593992 8_4:-16600895 Msa1316330:CDS
TCTTACTGGTGTGAATGTGG+AGG 0.594853 8_4:-16600896 Msa1316330:CDS
CATGCTTCTACTGACCCCTA+AGG 0.606877 8_4:-16602684 Msa1316330:five_prime_UTR
GGCATGTAAAACTCTAGGAA+CGG 0.609008 8_4:+16600653 None:intergenic
AACTCAACTGCATCTTCAGT+AGG 0.619231 8_4:+16600958 None:intergenic
AAATGTTGGTCTTACCTTAG+GGG 0.622705 8_4:+16602670 None:intergenic
TAGAAGCATGTAAGGGAACA+GGG 0.626827 8_4:+16602697 None:intergenic
GTCATTGGTGACTCAGCAGT+AGG 0.628855 8_4:-16602462 Msa1316330:CDS
GTTGAGTTTGCAGAAGACCA+AGG 0.629515 8_4:-16600943 Msa1316330:CDS
TCTCTGAGAAGAATAAACCT+TGG 0.630408 8_4:+16600926 None:intergenic
TGGAATGTGGTAATGTGAAG+GGG 0.631602 8_4:-16600819 Msa1316330:CDS
TTGTTGCTGATATAGGTACA+GGG 0.635425 8_4:-16601160 Msa1316330:intron
ATTGGAATGTGGTAATGTGA+AGG 0.637056 8_4:-16600821 Msa1316330:CDS
ATACTATAGAGGTGCATTAG+GGG 0.644147 8_4:-16601124 Msa1316330:CDS
TAAGGGAACAGGGAAAAGGT+AGG 0.645907 8_4:+16602707 None:intergenic
ATCATGCTAGTTGGTAACAA+AGG 0.656634 8_4:-16601006 Msa1316330:CDS
GGGTCAGTAGAAGCATGTAA+GGG 0.678693 8_4:+16602690 None:intergenic
GAACCATTCTCAAATCAACA+AGG 0.712150 8_4:+16600980 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CATGTTAAAATATAATAATT+TGG + chr8_4:16600707-16600726 None:intergenic 10.0%
!! CATGTTAAAATATAATAATT+TGG + chr8_4:16600707-16600726 None:intergenic 10.0%
!! AATTATGATGTATTATGTAA+GGG + chr8_4:16602740-16602759 None:intergenic 15.0%
!! AAATTATGATGTATTATGTA+AGG + chr8_4:16602741-16602760 None:intergenic 15.0%
!! AATTATGATGTATTATGTAA+GGG + chr8_4:16602740-16602759 None:intergenic 15.0%
!! AAATTATGATGTATTATGTA+AGG + chr8_4:16602741-16602760 None:intergenic 15.0%
!! CAAGAAAATAGATTATGATA+TGG - chr8_4:16600827-16600846 Msa1316330:CDS 20.0%
!! GAAAATAGATTATGTGTTTA+AGG - chr8_4:16600854-16600873 Msa1316330:CDS 20.0%
!! TCAAAATGGTACATAATTAA+TGG - chr8_4:16601149-16601168 Msa1316330:intron 20.0%
!! TTATTATTGCAATATTAGAG+TGG - chr8_4:16601264-16601283 Msa1316330:intron 20.0%
!! AAAGAAGAAATCTGATTAAA+AGG - chr8_4:16601649-16601668 Msa1316330:intron 20.0%
!!! TAATAGTGTAGTTTCTAAAA+AGG - chr8_4:16602499-16602518 Msa1316330:CDS 20.0%
!!! TTGTATTTGATTTTGAAGTT+TGG - chr8_4:16602663-16602682 Msa1316330:five_prime_UTR 20.0%
!! ATTATGATGTATTATGTAAG+GGG + chr8_4:16602739-16602758 None:intergenic 20.0%
!! CAAGAAAATAGATTATGATA+TGG - chr8_4:16600827-16600846 Msa1316330:CDS 20.0%
!! GAAAATAGATTATGTGTTTA+AGG - chr8_4:16600854-16600873 Msa1316330:CDS 20.0%
!! TCAAAATGGTACATAATTAA+TGG - chr8_4:16601149-16601168 Msa1316330:intron 20.0%
!! TTATTATTGCAATATTAGAG+TGG - chr8_4:16601264-16601283 Msa1316330:intron 20.0%
!! AAAGAAGAAATCTGATTAAA+AGG - chr8_4:16601649-16601668 Msa1316330:intron 20.0%
!!! TAATAGTGTAGTTTCTAAAA+AGG - chr8_4:16602499-16602518 Msa1316330:CDS 20.0%
!!! TTGTATTTGATTTTGAAGTT+TGG - chr8_4:16602663-16602682 Msa1316330:five_prime_UTR 20.0%
!! ATTATGATGTATTATGTAAG+GGG + chr8_4:16602739-16602758 None:intergenic 20.0%
! AATTTGGTATGACTAAATGT+TGG + chr8_4:16600691-16600710 None:intergenic 25.0%
! GAAAAACTCAAATACTATCA+AGG - chr8_4:16600904-16600923 Msa1316330:CDS 25.0%
! AACTACATTGAGTTTCAAAA+TGG - chr8_4:16601135-16601154 Msa1316330:CDS 25.0%
! ATATGTTTCTTACGTCAAAA+TGG + chr8_4:16601319-16601338 None:intergenic 25.0%
! ATTATGTCACATTAATGTTC+TGG - chr8_4:16601354-16601373 Msa1316330:intron 25.0%
!!! ATTATACCTTGCTTTAGAAA+AGG - chr8_4:16601436-16601455 Msa1316330:intron 25.0%
!! CTGAACAATTTTCAATTCAT+TGG + chr8_4:16601476-16601495 None:intergenic 25.0%
!!! GCATTTTGAAAAATTTGGTT+GGG - chr8_4:16601809-16601828 Msa1316330:intron 25.0%
! GGTAAATGATCAATTGTTAT+CGG + chr8_4:16601926-16601945 None:intergenic 25.0%
! TTATGAAGAAGCAAAAATGT+TGG - chr8_4:16602005-16602024 Msa1316330:intron 25.0%
!! TTAGTCTTTGTAGTTGTATA+CGG - chr8_4:16602070-16602089 Msa1316330:intron 25.0%
!! GTAAATTTTGTTGCTGATAT+AGG - chr8_4:16602177-16602196 Msa1316330:intron 25.0%
!! TCTAAGATTGATGTAATTTC+AGG - chr8_4:16602563-16602582 Msa1316330:exon 25.0%
! CTTAGGCATAATATGAAAAA+GGG - chr8_4:16602713-16602732 Msa1316330:five_prime_UTR 25.0%
! AATTTGGTATGACTAAATGT+TGG + chr8_4:16600691-16600710 None:intergenic 25.0%
! GAAAAACTCAAATACTATCA+AGG - chr8_4:16600904-16600923 Msa1316330:CDS 25.0%
! AACTACATTGAGTTTCAAAA+TGG - chr8_4:16601135-16601154 Msa1316330:CDS 25.0%
! ATATGTTTCTTACGTCAAAA+TGG + chr8_4:16601319-16601338 None:intergenic 25.0%
! ATTATGTCACATTAATGTTC+TGG - chr8_4:16601354-16601373 Msa1316330:intron 25.0%
!!! ATTATACCTTGCTTTAGAAA+AGG - chr8_4:16601436-16601455 Msa1316330:intron 25.0%
!! CTGAACAATTTTCAATTCAT+TGG + chr8_4:16601476-16601495 None:intergenic 25.0%
!!! GCATTTTGAAAAATTTGGTT+GGG - chr8_4:16601809-16601828 Msa1316330:intron 25.0%
! GGTAAATGATCAATTGTTAT+CGG + chr8_4:16601926-16601945 None:intergenic 25.0%
! TTATGAAGAAGCAAAAATGT+TGG - chr8_4:16602005-16602024 Msa1316330:intron 25.0%
!! TTAGTCTTTGTAGTTGTATA+CGG - chr8_4:16602070-16602089 Msa1316330:intron 25.0%
!! GTAAATTTTGTTGCTGATAT+AGG - chr8_4:16602177-16602196 Msa1316330:intron 25.0%
!! TCTAAGATTGATGTAATTTC+AGG - chr8_4:16602563-16602582 Msa1316330:exon 25.0%
! CTTAGGCATAATATGAAAAA+GGG - chr8_4:16602713-16602732 Msa1316330:five_prime_UTR 25.0%
!! TAAATGTTGGTCTTACCTTA+GGG + chr8_4:16600678-16600697 None:intergenic 30.0%
TTTAACATGTTGTGAAACCA+AGG - chr8_4:16600718-16600737 Msa1316330:exon 30.0%
ACTAGACTCTTATAAAACCT+TGG + chr8_4:16600745-16600764 None:intergenic 30.0%
TCTTGTCTTGTGAAGAAAAA+TGG - chr8_4:16600773-16600792 Msa1316330:CDS 30.0%
TTTGACTCAAAGTCAACTAT+TGG - chr8_4:16600948-16600967 Msa1316330:CDS 30.0%
!! TTGGTGTTGAATTTCAAACT+AGG - chr8_4:16600967-16600986 Msa1316330:CDS 30.0%
AAGTAATTAAAGCTCAGATC+TGG - chr8_4:16601009-16601028 Msa1316330:CDS 30.0%
AGTAATTAAAGCTCAGATCT+GGG - chr8_4:16601010-16601029 Msa1316330:CDS 30.0%
TGAAACTCAATGTAGTTCAA+GGG + chr8_4:16601132-16601151 None:intergenic 30.0%
TTGAAACTCAATGTAGTTCA+AGG + chr8_4:16601133-16601152 None:intergenic 30.0%
!!! AGAGTGCTCATTTTTAACTT+AGG + chr8_4:16601176-16601195 None:intergenic 30.0%
TTGCAATATTAGAGTGGTAT+TGG - chr8_4:16601270-16601289 Msa1316330:intron 30.0%
! AACTCTTGATGACTTACTTA+AGG + chr8_4:16601611-16601630 None:intergenic 30.0%
ATTAAAAGGAGAGAATACAC+CGG - chr8_4:16601663-16601682 Msa1316330:intron 30.0%
!! GGCATTTTGAAAAATTTGGT+TGG - chr8_4:16601808-16601827 Msa1316330:intron 30.0%
! GATGTCAATAATTTGTGCAT+TGG + chr8_4:16601947-16601966 None:intergenic 30.0%
!! GACATCTAGTCTTTTATATG+TGG - chr8_4:16601961-16601980 Msa1316330:intron 30.0%
! ATGGTCAAAAGATTGTCTTT+TGG + chr8_4:16602267-16602286 None:intergenic 30.0%
! TTTTGACCATGTTGCTAAAT+GGG - chr8_4:16602277-16602296 Msa1316330:intron 30.0%
! TGTAGTTTCTAAAAAGGCAT+TGG - chr8_4:16602505-16602524 Msa1316330:CDS 30.0%
!!! ATTTGATTTTGAAGTTTGGC+AGG - chr8_4:16602667-16602686 Msa1316330:five_prime_UTR 30.0%
!!! TTTGATTTTGAAGTTTGGCA+GGG - chr8_4:16602668-16602687 Msa1316330:five_prime_UTR 30.0%
!! CCTTTTTCATATTATGCCTA+AGG + chr8_4:16602715-16602734 None:intergenic 30.0%
CCTTAGGCATAATATGAAAA+AGG - chr8_4:16602712-16602731 Msa1316330:five_prime_UTR 30.0%
!! TAAATGTTGGTCTTACCTTA+GGG + chr8_4:16600678-16600697 None:intergenic 30.0%
TTTAACATGTTGTGAAACCA+AGG - chr8_4:16600718-16600737 Msa1316330:exon 30.0%
ACTAGACTCTTATAAAACCT+TGG + chr8_4:16600745-16600764 None:intergenic 30.0%
TCTTGTCTTGTGAAGAAAAA+TGG - chr8_4:16600773-16600792 Msa1316330:CDS 30.0%
TTTGACTCAAAGTCAACTAT+TGG - chr8_4:16600948-16600967 Msa1316330:CDS 30.0%
!! TTGGTGTTGAATTTCAAACT+AGG - chr8_4:16600967-16600986 Msa1316330:CDS 30.0%
AAGTAATTAAAGCTCAGATC+TGG - chr8_4:16601009-16601028 Msa1316330:CDS 30.0%
AGTAATTAAAGCTCAGATCT+GGG - chr8_4:16601010-16601029 Msa1316330:CDS 30.0%
TGAAACTCAATGTAGTTCAA+GGG + chr8_4:16601132-16601151 None:intergenic 30.0%
TTGAAACTCAATGTAGTTCA+AGG + chr8_4:16601133-16601152 None:intergenic 30.0%
!!! AGAGTGCTCATTTTTAACTT+AGG + chr8_4:16601176-16601195 None:intergenic 30.0%
TTGCAATATTAGAGTGGTAT+TGG - chr8_4:16601270-16601289 Msa1316330:intron 30.0%
! AACTCTTGATGACTTACTTA+AGG + chr8_4:16601611-16601630 None:intergenic 30.0%
ATTAAAAGGAGAGAATACAC+CGG - chr8_4:16601663-16601682 Msa1316330:intron 30.0%
!! GGCATTTTGAAAAATTTGGT+TGG - chr8_4:16601808-16601827 Msa1316330:intron 30.0%
! GATGTCAATAATTTGTGCAT+TGG + chr8_4:16601947-16601966 None:intergenic 30.0%
!! GACATCTAGTCTTTTATATG+TGG - chr8_4:16601961-16601980 Msa1316330:intron 30.0%
! ATGGTCAAAAGATTGTCTTT+TGG + chr8_4:16602267-16602286 None:intergenic 30.0%
! TTTTGACCATGTTGCTAAAT+GGG - chr8_4:16602277-16602296 Msa1316330:intron 30.0%
! TGTAGTTTCTAAAAAGGCAT+TGG - chr8_4:16602505-16602524 Msa1316330:CDS 30.0%
!!! ATTTGATTTTGAAGTTTGGC+AGG - chr8_4:16602667-16602686 Msa1316330:five_prime_UTR 30.0%
!!! TTTGATTTTGAAGTTTGGCA+GGG - chr8_4:16602668-16602687 Msa1316330:five_prime_UTR 30.0%
!! CCTTTTTCATATTATGCCTA+AGG + chr8_4:16602715-16602734 None:intergenic 30.0%
CCTTAGGCATAATATGAAAA+AGG - chr8_4:16602712-16602731 Msa1316330:five_prime_UTR 30.0%
!! AAATGTTGGTCTTACCTTAG+GGG + chr8_4:16600677-16600696 None:intergenic 35.0%
!! CTAAATGTTGGTCTTACCTT+AGG + chr8_4:16600679-16600698 None:intergenic 35.0%
TCTTATAAAACCTTGGACCT+TGG + chr8_4:16600738-16600757 None:intergenic 35.0%
TTGTGAAGAAAAATGGTCCA+GGG - chr8_4:16600780-16600799 Msa1316330:CDS 35.0%
! GTGTTTAAGGTAGTTGTCAT+TGG - chr8_4:16600867-16600886 Msa1316330:CDS 35.0%
ACTAGGACTGTCACTATTAA+TGG - chr8_4:16600984-16601003 Msa1316330:CDS 35.0%
TAGTTCAAGGGAAATAGAGA+AGG + chr8_4:16601120-16601139 None:intergenic 35.0%
! TGTCACATTAATGTTCTGGA+AGG - chr8_4:16601358-16601377 Msa1316330:intron 35.0%
!! GTCACATTAATGTTCTGGAA+GGG - chr8_4:16601359-16601378 Msa1316330:intron 35.0%
!! TCACATTAATGTTCTGGAAG+GGG - chr8_4:16601360-16601379 Msa1316330:intron 35.0%
! TATGAGACAGTGAACACTTT+TGG - chr8_4:16601390-16601409 Msa1316330:intron 35.0%
!! ATACCTTGCTTTAGAAAAGG+TGG - chr8_4:16601439-16601458 Msa1316330:intron 35.0%
!! TACCTTGCTTTAGAAAAGGT+GGG - chr8_4:16601440-16601459 Msa1316330:intron 35.0%
TTGTTCAGTGTGTGCATTAA+TGG - chr8_4:16601488-16601507 Msa1316330:intron 35.0%
AGTGTGTGCATTAATGGTAA+AGG - chr8_4:16601494-16601513 Msa1316330:intron 35.0%
GTGTGTGCATTAATGGTAAA+GGG - chr8_4:16601495-16601514 Msa1316330:intron 35.0%
GAGAATGAGCAAAATGTGTT+GGG + chr8_4:16601711-16601730 None:intergenic 35.0%
TGAGAATGAGCAAAATGTGT+TGG + chr8_4:16601712-16601731 None:intergenic 35.0%
!!! CAGGGGCATTTTGAAAAATT+TGG - chr8_4:16601804-16601823 Msa1316330:intron 35.0%
GTAGGTGTTTAGATACTTCA+TGG - chr8_4:16601867-16601886 Msa1316330:intron 35.0%
TGGTCAAATGTTCGATTCTT+AGG - chr8_4:16601981-16602000 Msa1316330:intron 35.0%
GCAAAAATGTTGGAAGTGAT+CGG - chr8_4:16602015-16602034 Msa1316330:intron 35.0%
!!! GTTAGTTTTTGACTTAGCCA+GGG + chr8_4:16602102-16602121 None:intergenic 35.0%
!!! TGTTAGTTTTTGACTTAGCC+AGG + chr8_4:16602103-16602122 None:intergenic 35.0%
GCTAAGTCAAAAACTAACAC+TGG - chr8_4:16602104-16602123 Msa1316330:intron 35.0%
TTTGTTGCTGATATAGGTAC+AGG - chr8_4:16602183-16602202 Msa1316330:intron 35.0%
TTGTTGCTGATATAGGTACA+GGG - chr8_4:16602184-16602203 Msa1316330:intron 35.0%
GTAACAAGTGCATACTATAG+AGG - chr8_4:16602209-16602228 Msa1316330:intron 35.0%
! CATACTATAGAGGTGCATTA+GGG - chr8_4:16602219-16602238 Msa1316330:intron 35.0%
! ATACTATAGAGGTGCATTAG+GGG - chr8_4:16602220-16602239 Msa1316330:intron 35.0%
! CTTTTGACCATGTTGCTAAA+TGG - chr8_4:16602276-16602295 Msa1316330:intron 35.0%
TCAATTGTGATCATGCTAGT+TGG - chr8_4:16602329-16602348 Msa1316330:CDS 35.0%
!! ATCATGCTAGTTGGTAACAA+AGG - chr8_4:16602338-16602357 Msa1316330:CDS 35.0%
!! TGACCTTGTTGATTTGAGAA+TGG - chr8_4:16602361-16602380 Msa1316330:CDS 35.0%
GAACCATTCTCAAATCAACA+AGG + chr8_4:16602367-16602386 None:intergenic 35.0%
! TCTCTGAGAAGAATAAACCT+TGG + chr8_4:16602421-16602440 None:intergenic 35.0%
!! TCTAAAAAGGCATTGGAATG+TGG - chr8_4:16602512-16602531 Msa1316330:CDS 35.0%
! ATTGGAATGTGGTAATGTGA+AGG - chr8_4:16602523-16602542 Msa1316330:CDS 35.0%
! TTGGAATGTGGTAATGTGAA+GGG - chr8_4:16602524-16602543 Msa1316330:CDS 35.0%
!! TGTAATTTCAGGTGCTGAAT+TGG - chr8_4:16602574-16602593 Msa1316330:exon 35.0%
!! AAATGTTGGTCTTACCTTAG+GGG + chr8_4:16600677-16600696 None:intergenic 35.0%
!! CTAAATGTTGGTCTTACCTT+AGG + chr8_4:16600679-16600698 None:intergenic 35.0%
TCTTATAAAACCTTGGACCT+TGG + chr8_4:16600738-16600757 None:intergenic 35.0%
TTGTGAAGAAAAATGGTCCA+GGG - chr8_4:16600780-16600799 Msa1316330:CDS 35.0%
! GTGTTTAAGGTAGTTGTCAT+TGG - chr8_4:16600867-16600886 Msa1316330:CDS 35.0%
ACTAGGACTGTCACTATTAA+TGG - chr8_4:16600984-16601003 Msa1316330:CDS 35.0%
TAGTTCAAGGGAAATAGAGA+AGG + chr8_4:16601120-16601139 None:intergenic 35.0%
! TGTCACATTAATGTTCTGGA+AGG - chr8_4:16601358-16601377 Msa1316330:intron 35.0%
!! GTCACATTAATGTTCTGGAA+GGG - chr8_4:16601359-16601378 Msa1316330:intron 35.0%
!! TCACATTAATGTTCTGGAAG+GGG - chr8_4:16601360-16601379 Msa1316330:intron 35.0%
! TATGAGACAGTGAACACTTT+TGG - chr8_4:16601390-16601409 Msa1316330:intron 35.0%
!! ATACCTTGCTTTAGAAAAGG+TGG - chr8_4:16601439-16601458 Msa1316330:intron 35.0%
!! TACCTTGCTTTAGAAAAGGT+GGG - chr8_4:16601440-16601459 Msa1316330:intron 35.0%
TTGTTCAGTGTGTGCATTAA+TGG - chr8_4:16601488-16601507 Msa1316330:intron 35.0%
AGTGTGTGCATTAATGGTAA+AGG - chr8_4:16601494-16601513 Msa1316330:intron 35.0%
GTGTGTGCATTAATGGTAAA+GGG - chr8_4:16601495-16601514 Msa1316330:intron 35.0%
GAGAATGAGCAAAATGTGTT+GGG + chr8_4:16601711-16601730 None:intergenic 35.0%
TGAGAATGAGCAAAATGTGT+TGG + chr8_4:16601712-16601731 None:intergenic 35.0%
!!! CAGGGGCATTTTGAAAAATT+TGG - chr8_4:16601804-16601823 Msa1316330:intron 35.0%
GTAGGTGTTTAGATACTTCA+TGG - chr8_4:16601867-16601886 Msa1316330:intron 35.0%
TGGTCAAATGTTCGATTCTT+AGG - chr8_4:16601981-16602000 Msa1316330:intron 35.0%
GCAAAAATGTTGGAAGTGAT+CGG - chr8_4:16602015-16602034 Msa1316330:intron 35.0%
!!! GTTAGTTTTTGACTTAGCCA+GGG + chr8_4:16602102-16602121 None:intergenic 35.0%
!!! TGTTAGTTTTTGACTTAGCC+AGG + chr8_4:16602103-16602122 None:intergenic 35.0%
GCTAAGTCAAAAACTAACAC+TGG - chr8_4:16602104-16602123 Msa1316330:intron 35.0%
TTTGTTGCTGATATAGGTAC+AGG - chr8_4:16602183-16602202 Msa1316330:intron 35.0%
TTGTTGCTGATATAGGTACA+GGG - chr8_4:16602184-16602203 Msa1316330:intron 35.0%
GTAACAAGTGCATACTATAG+AGG - chr8_4:16602209-16602228 Msa1316330:intron 35.0%
! CATACTATAGAGGTGCATTA+GGG - chr8_4:16602219-16602238 Msa1316330:intron 35.0%
! ATACTATAGAGGTGCATTAG+GGG - chr8_4:16602220-16602239 Msa1316330:intron 35.0%
! CTTTTGACCATGTTGCTAAA+TGG - chr8_4:16602276-16602295 Msa1316330:intron 35.0%
TCAATTGTGATCATGCTAGT+TGG - chr8_4:16602329-16602348 Msa1316330:CDS 35.0%
!! ATCATGCTAGTTGGTAACAA+AGG - chr8_4:16602338-16602357 Msa1316330:CDS 35.0%
!! TGACCTTGTTGATTTGAGAA+TGG - chr8_4:16602361-16602380 Msa1316330:CDS 35.0%
GAACCATTCTCAAATCAACA+AGG + chr8_4:16602367-16602386 None:intergenic 35.0%
! TCTCTGAGAAGAATAAACCT+TGG + chr8_4:16602421-16602440 None:intergenic 35.0%
!! TCTAAAAAGGCATTGGAATG+TGG - chr8_4:16602512-16602531 Msa1316330:CDS 35.0%
! ATTGGAATGTGGTAATGTGA+AGG - chr8_4:16602523-16602542 Msa1316330:CDS 35.0%
! TTGGAATGTGGTAATGTGAA+GGG - chr8_4:16602524-16602543 Msa1316330:CDS 35.0%
!! TGTAATTTCAGGTGCTGAAT+TGG - chr8_4:16602574-16602593 Msa1316330:exon 35.0%
! TAGAAGCATGTAAGGGAACA+GGG + chr8_4:16600650-16600669 None:intergenic 40.0%
CTTGTGAAGAAAAATGGTCC+AGG - chr8_4:16600779-16600798 Msa1316330:CDS 40.0%
AGAGAGAGATGAACCTTTCT+TGG + chr8_4:16601046-16601065 None:intergenic 40.0%
TGACATGAGTTTCGTACAAG+TGG - chr8_4:16601570-16601589 Msa1316330:intron 40.0%
AGAGCAGAATTCAACAACTC+CGG + chr8_4:16601685-16601704 None:intergenic 40.0%
TGTGTGAGTTAACTCAAGCA+AGG + chr8_4:16601754-16601773 None:intergenic 40.0%
! GCATACTATAGAGGTGCATT+AGG - chr8_4:16602218-16602237 Msa1316330:intron 40.0%
AACTCAACTGCATCTTCAGT+AGG + chr8_4:16602389-16602408 None:intergenic 40.0%
! TGGAATGTGGTAATGTGAAG+GGG - chr8_4:16602525-16602544 Msa1316330:CDS 40.0%
TGAAGGGGATTGCACTAAAA+GGG - chr8_4:16602540-16602559 Msa1316330:CDS 40.0%
! GGCATGTAAAACTCTAGGAA+CGG + chr8_4:16602694-16602713 None:intergenic 40.0%
CCTAAGGCATGTAAAACTCT+AGG + chr8_4:16602699-16602718 None:intergenic 40.0%
! CCTAGAGTTTTACATGCCTT+AGG - chr8_4:16602696-16602715 Msa1316330:five_prime_UTR 40.0%
! TAGAAGCATGTAAGGGAACA+GGG + chr8_4:16600650-16600669 None:intergenic 40.0%
CTTGTGAAGAAAAATGGTCC+AGG - chr8_4:16600779-16600798 Msa1316330:CDS 40.0%
AGAGAGAGATGAACCTTTCT+TGG + chr8_4:16601046-16601065 None:intergenic 40.0%
TGACATGAGTTTCGTACAAG+TGG - chr8_4:16601570-16601589 Msa1316330:intron 40.0%
AGAGCAGAATTCAACAACTC+CGG + chr8_4:16601685-16601704 None:intergenic 40.0%
TGTGTGAGTTAACTCAAGCA+AGG + chr8_4:16601754-16601773 None:intergenic 40.0%
! GCATACTATAGAGGTGCATT+AGG - chr8_4:16602218-16602237 Msa1316330:intron 40.0%
AACTCAACTGCATCTTCAGT+AGG + chr8_4:16602389-16602408 None:intergenic 40.0%
! TGGAATGTGGTAATGTGAAG+GGG - chr8_4:16602525-16602544 Msa1316330:CDS 40.0%
TGAAGGGGATTGCACTAAAA+GGG - chr8_4:16602540-16602559 Msa1316330:CDS 40.0%
! GGCATGTAAAACTCTAGGAA+CGG + chr8_4:16602694-16602713 None:intergenic 40.0%
CCTAAGGCATGTAAAACTCT+AGG + chr8_4:16602699-16602718 None:intergenic 40.0%
! CCTAGAGTTTTACATGCCTT+AGG - chr8_4:16602696-16602715 Msa1316330:five_prime_UTR 40.0%
TAAGGGAACAGGGAAAAGGT+AGG + chr8_4:16600640-16600659 None:intergenic 45.0%
CATGTAAGGGAACAGGGAAA+AGG + chr8_4:16600644-16600663 None:intergenic 45.0%
! GTAGAAGCATGTAAGGGAAC+AGG + chr8_4:16600651-16600670 None:intergenic 45.0%
! GGGTCAGTAGAAGCATGTAA+GGG + chr8_4:16600657-16600676 None:intergenic 45.0%
TGTTGTGAAACCAAGGTCCA+AGG - chr8_4:16600725-16600744 Msa1316330:exon 45.0%
GGTGAGAAGAAGCAAGAGAA+TGG - chr8_4:16600801-16600820 Msa1316330:CDS 45.0%
GATTATCACGCAGACACATG+TGG - chr8_4:16601202-16601221 Msa1316330:intron 45.0%
!!! CACCCACCTTTTCTAAAGCA+AGG + chr8_4:16601445-16601464 None:intergenic 45.0%
TGGGAATGAGCAAAACGTGT+TGG - chr8_4:16601828-16601847 Msa1316330:intron 45.0%
GGGAATGAGCAAAACGTGTT+GGG - chr8_4:16601829-16601848 Msa1316330:intron 45.0%
GTTGTATACGGAATATGCCC+TGG - chr8_4:16602082-16602101 Msa1316330:intron 45.0%
CCTCAACCCATTTAGCAACA+TGG + chr8_4:16602286-16602305 None:intergenic 45.0%
!! CCATGTTGCTAAATGGGTTG+AGG - chr8_4:16602283-16602302 Msa1316330:intron 45.0%
GTTGAGTTTGCAGAAGACCA+AGG - chr8_4:16602401-16602420 Msa1316330:CDS 45.0%
TCAGAGACTTCAGCTCTTAC+TGG - chr8_4:16602434-16602453 Msa1316330:CDS 45.0%
AGCTCTTACTGGTGTGAATG+TGG - chr8_4:16602445-16602464 Msa1316330:CDS 45.0%
TCTTACTGGTGTGAATGTGG+AGG - chr8_4:16602448-16602467 Msa1316330:CDS 45.0%
CTTACTGGTGTGAATGTGGA+GGG - chr8_4:16602449-16602468 Msa1316330:CDS 45.0%
GTGAAGGGGATTGCACTAAA+AGG - chr8_4:16602539-16602558 Msa1316330:CDS 45.0%
TAAGGGAACAGGGAAAAGGT+AGG + chr8_4:16600640-16600659 None:intergenic 45.0%
CATGTAAGGGAACAGGGAAA+AGG + chr8_4:16600644-16600663 None:intergenic 45.0%
! GTAGAAGCATGTAAGGGAAC+AGG + chr8_4:16600651-16600670 None:intergenic 45.0%
! GGGTCAGTAGAAGCATGTAA+GGG + chr8_4:16600657-16600676 None:intergenic 45.0%
TGTTGTGAAACCAAGGTCCA+AGG - chr8_4:16600725-16600744 Msa1316330:exon 45.0%
GGTGAGAAGAAGCAAGAGAA+TGG - chr8_4:16600801-16600820 Msa1316330:CDS 45.0%
GATTATCACGCAGACACATG+TGG - chr8_4:16601202-16601221 Msa1316330:intron 45.0%
!!! CACCCACCTTTTCTAAAGCA+AGG + chr8_4:16601445-16601464 None:intergenic 45.0%
TGGGAATGAGCAAAACGTGT+TGG - chr8_4:16601828-16601847 Msa1316330:intron 45.0%
GGGAATGAGCAAAACGTGTT+GGG - chr8_4:16601829-16601848 Msa1316330:intron 45.0%
GTTGTATACGGAATATGCCC+TGG - chr8_4:16602082-16602101 Msa1316330:intron 45.0%
CCTCAACCCATTTAGCAACA+TGG + chr8_4:16602286-16602305 None:intergenic 45.0%
!! CCATGTTGCTAAATGGGTTG+AGG - chr8_4:16602283-16602302 Msa1316330:intron 45.0%
GTTGAGTTTGCAGAAGACCA+AGG - chr8_4:16602401-16602420 Msa1316330:CDS 45.0%
TCAGAGACTTCAGCTCTTAC+TGG - chr8_4:16602434-16602453 Msa1316330:CDS 45.0%
AGCTCTTACTGGTGTGAATG+TGG - chr8_4:16602445-16602464 Msa1316330:CDS 45.0%
TCTTACTGGTGTGAATGTGG+AGG - chr8_4:16602448-16602467 Msa1316330:CDS 45.0%
CTTACTGGTGTGAATGTGGA+GGG - chr8_4:16602449-16602468 Msa1316330:CDS 45.0%
GTGAAGGGGATTGCACTAAA+AGG - chr8_4:16602539-16602558 Msa1316330:CDS 45.0%
! GGGGTCAGTAGAAGCATGTA+AGG + chr8_4:16600658-16600677 None:intergenic 50.0%
CATGCTTCTACTGACCCCTA+AGG - chr8_4:16600660-16600679 Msa1316330:three_prime_UTR 50.0%
TCTCTTGCTTCTTCTCACCC+TGG + chr8_4:16600800-16600819 None:intergenic 50.0%
! GTCATTGGTGACTCAGCAGT+AGG - chr8_4:16600882-16600901 Msa1316330:CDS 50.0%
TGCGTGAGTTAACTCACGCA+GGG - chr8_4:16601786-16601805 Msa1316330:intron 50.0%
GGGAGAAGAGCAGAATTCGT+AGG - chr8_4:16601849-16601868 Msa1316330:intron 50.0%
! GGGGTCAGTAGAAGCATGTA+AGG + chr8_4:16600658-16600677 None:intergenic 50.0%
CATGCTTCTACTGACCCCTA+AGG - chr8_4:16600660-16600679 Msa1316330:three_prime_UTR 50.0%
TCTCTTGCTTCTTCTCACCC+TGG + chr8_4:16600800-16600819 None:intergenic 50.0%
! GTCATTGGTGACTCAGCAGT+AGG - chr8_4:16600882-16600901 Msa1316330:CDS 50.0%
TGCGTGAGTTAACTCACGCA+GGG - chr8_4:16601786-16601805 Msa1316330:intron 50.0%
GGGAGAAGAGCAGAATTCGT+AGG - chr8_4:16601849-16601868 Msa1316330:intron 50.0%
! GCTCAGATCTGGGATACTGC+TGG - chr8_4:16601020-16601039 Msa1316330:CDS 55.0%
GGGATACTGCTGGCCAAGAA+AGG - chr8_4:16601030-16601049 Msa1316330:CDS 55.0%
CTGCGTGAGTTAACTCACGC+AGG - chr8_4:16601785-16601804 Msa1316330:intron 55.0%
GCGTGAGTTAACTCACGCAG+GGG - chr8_4:16601787-16601806 Msa1316330:intron 55.0%
! GCTCAGATCTGGGATACTGC+TGG - chr8_4:16601020-16601039 Msa1316330:CDS 55.0%
GGGATACTGCTGGCCAAGAA+AGG - chr8_4:16601030-16601049 Msa1316330:CDS 55.0%
CTGCGTGAGTTAACTCACGC+AGG - chr8_4:16601785-16601804 Msa1316330:intron 55.0%
GCGTGAGTTAACTCACGCAG+GGG - chr8_4:16601787-16601806 Msa1316330:intron 55.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 16600596 16602770 16600596 ID=Msa1316330;Name=Msa1316330
chr8_4 mRNA 16600596 16602770 16600596 ID=Msa1316330-mRNA-1;Parent=Msa1316330;Name=Msa1316330-mRNA-1;_AED=0.18;_eAED=0.18;_QI=196|1|1|1|1|1|2|133|232
chr8_4 exon 16600596 16601167 16600596 ID=Msa1316330-mRNA-1:exon:6227;Parent=Msa1316330-mRNA-1
chr8_4 exon 16602315 16602770 16602315 ID=Msa1316330-mRNA-1:exon:6226;Parent=Msa1316330-mRNA-1
chr8_4 five_prime_UTR 16602575 16602770 16602575 ID=Msa1316330-mRNA-1:five_prime_utr;Parent=Msa1316330-mRNA-1
chr8_4 CDS 16602315 16602574 16602315 ID=Msa1316330-mRNA-1:cds;Parent=Msa1316330-mRNA-1
chr8_4 CDS 16600729 16601167 16600729 ID=Msa1316330-mRNA-1:cds;Parent=Msa1316330-mRNA-1
chr8_4 three_prime_UTR 16600596 16600728 16600596 ID=Msa1316330-mRNA-1:three_prime_utr;Parent=Msa1316330-mRNA-1
Gene Sequence

>Msa1316330

ATGGTCCAGGGTGAGAAGAAGCAAGAGAATGGACACAAGAAAATAGATTATGATATGGAAGAGAAAATAGATTATGTGTTTAAGGTAGTTGTCATTGGTGACTCAGCAGTAGGAAAAACTCAAATACTATCAAGGTTTTCAAAGAATGAGTTTTGCTTTGACTCAAAGTCAACTATTGGTGTTGAATTTCAAACTAGGACTGTCACTATTAATGGTAAAGTAATTAAAGCTCAGATCTGGGATACTGCTGGCCAAGAAAGGTACAGGGCTGTAACAAGTGCATACTATAGAGGTGCATTAGGGGCAATGCTAGTATATGACATAACCAAAAGACAATCTTTTGACCATGTTGCTAAATGGGTTGAGGAACTTAGAGCACATGCAGATAACTCAATTGTGATCATGCTAGTTGGTAACAAAGGTGACCTTGTTGATTTGAGAATGGTTCCTACTGAAGATGCAGTTGAGTTTGCAGAAGACCAAGGTTTATTCTTCTCAGAGACTTCAGCTCTTACTGGTGTGAATGTGGAGGGTGCATTTATCAAATTGCTAGAAGAGATTAATAGTGTAGTTTCTAAAAAGGCATTGGAATGTGGTAATGTGAAGGGGATTGCACTAAAAGGGTCTAAGATTGATGTAATTTCAGGTGCTGAATTGGAAATTAGTGAGATAAAGAAGCTGTCTTCATGCTCTTGTTGA

Protein sequence

>Msa1316330

MVQGEKKQENGHKKIDYDMEEKIDYVFKVVVIGDSAVGKTQILSRFSKNEFCFDSKSTIGVEFQTRTVTINGKVIKAQIWDTAGQERYRAVTSAYYRGALGAMLVYDITKRQSFDHVAKWVEELRAHADNSIVIMLVGNKGDLVDLRMVPTEDAVEFAEDQGLFFSETSALTGVNVEGAFIKLLEEINSVVSKKALECGNVKGIALKGSKIDVISGAELEISEIKKLSSCSC*