AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0411560


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0411560 MtrunA17_Chr3g0102841 88.318 214 10 2 20 218 1 214 6.47e-134 374
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0411560 AT4G26555.1 56.039 207 62 5 26 209 7 207 5.50e-67 205
Msa0411560 AT4G26555.2 64.596 161 41 3 65 209 1 161 6.21e-64 196
Msa0411560 AT4G26555.3 51.875 160 59 4 26 173 7 160 4.85e-44 145

Find 63 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCATACATCCTCAGATTT+TGG 0.203686 3_2:+53844029 Msa0411560:three_prime_UTR
TAATACTCCCATTCTCAATT+TGG 0.235456 3_2:-53841562 None:intergenic
TGTTTAAAACAGATGATATT+GGG 0.285635 3_2:+53843103 Msa0411560:intron
TTGTTTAAAACAGATGATAT+TGG 0.292855 3_2:+53843102 Msa0411560:intron
ATTGTCCGAAACATTGTAAT+TGG 0.298762 3_2:-53844155 None:intergenic
CAGACAAACCTTATGACTTC+TGG 0.332375 3_2:-53841915 None:intergenic
ATGTTATTCTTCTCCTGCTT+TGG 0.339105 3_2:+53841866 Msa0411560:CDS
AGAAGCACACAGTGGAGATT+TGG 0.354056 3_2:+53842660 Msa0411560:CDS
AGGTTGATTGTTCAGTTTAT+CGG 0.354737 3_2:+53841828 Msa0411560:CDS
TTCTCATGCACAAGAGCCTT+TGG 0.363353 3_2:+53843803 Msa0411560:CDS
CCTTACCAATTACAATGTTT+CGG 0.366004 3_2:+53844150 Msa0411560:three_prime_UTR
GATTACTTTCTCCATTGAAT+TGG 0.366396 3_2:-53842882 None:intergenic
TTATACCGTTTACGAAATCT+TGG 0.379161 3_2:+53844125 Msa0411560:three_prime_UTR
AAATCTCCACTGTGTGCTTC+TGG 0.380339 3_2:-53842658 None:intergenic
AAGATAACGCCGTGCACATT+TGG 0.387030 3_2:+53844063 Msa0411560:three_prime_UTR
TCATCCAGAGGAAGTATAAC+AGG 0.388887 3_2:-53842904 None:intergenic
TGCTTTGGCTGCACCAATCA+TGG 0.393966 3_2:+53841881 Msa0411560:CDS
GGTTCATTCATGTCCATGAT+TGG 0.398655 3_2:-53841894 None:intergenic
GGGTTAAAGCAGGTCTTGAC+TGG 0.432983 3_2:+53843124 Msa0411560:CDS
TAATCCTGTTATACTTCCTC+TGG 0.433615 3_2:+53842900 Msa0411560:CDS
AGAACAAAGCAGTGTTAGAT+AGG 0.441357 3_2:+53843990 Msa0411560:three_prime_UTR
CAAAGCAGTGTTAGATAGGA+TGG 0.449896 3_2:+53843994 Msa0411560:three_prime_UTR
GCCAATGGAGTGAGAATTCA+AGG 0.457506 3_2:+53842069 Msa0411560:CDS
ACTTCCTTCCAAATTGAGAA+TGG 0.457588 3_2:+53841554 Msa0411560:CDS
GATAGAGATAATGTTCTACT+TGG 0.462812 3_2:+53841513 None:intergenic
CTTCCTTCCAAATTGAGAAT+GGG 0.464378 3_2:+53841555 Msa0411560:CDS
ACCTTGAATTCTCACTCCAT+TGG 0.488544 3_2:-53842070 None:intergenic
CCGAAACATTGTAATTGGTA+AGG 0.489244 3_2:-53844150 None:intergenic
ATGATTGGTGCAGCCAAAGC+AGG 0.489354 3_2:-53841879 None:intergenic
TGTGTATGCAGGCGTGCAAA+TGG 0.496678 3_2:+53842694 Msa0411560:CDS
AGGCACCAAGATTTCGTAAA+CGG 0.500417 3_2:-53844130 None:intergenic
TGAATGAACCAGAAGTCATA+AGG 0.510966 3_2:+53841907 Msa0411560:CDS
TAATTAAATTCAGCTTGTTG+TGG 0.514163 3_2:-53843861 None:intergenic
TTGAATTCAATTGTGTATGC+AGG 0.514249 3_2:+53842683 Msa0411560:CDS
ACTTCCTCTGGATGAGGACC+AGG 0.515288 3_2:+53842912 Msa0411560:CDS
GCAGAGACGGAAGCAGCATA+TGG 0.516780 3_2:-53841603 None:intergenic
GAGAAAGAAGGCTGCGTCGA+GGG 0.529313 3_2:-53843785 None:intergenic
GTTTAAAACAGATGATATTG+GGG 0.530275 3_2:+53843104 Msa0411560:intron
AGTACAGTAGACCAATTCAA+TGG 0.540259 3_2:+53842871 Msa0411560:intron
GTCTTGACTGGCATGAGAGT+TGG 0.540633 3_2:+53843136 Msa0411560:CDS
GCTCTTGTGCATGAGAAAGA+AGG 0.541224 3_2:-53843797 None:intergenic
GATGATATTGGGGTTAAAGC+AGG 0.544987 3_2:+53843114 Msa0411560:intron
TTGACTGGCATGAGAGTTGG+TGG 0.545256 3_2:+53843139 Msa0411560:CDS
TTGATCTTCTAAGATCATAG+AGG 0.548678 3_2:+53843927 Msa0411560:three_prime_UTR
CTTCCGTCTCTGCTTCTCCA+AGG 0.555396 3_2:+53841613 Msa0411560:CDS
AGGACTTTGAAGCTTGCCAA+TGG 0.556416 3_2:+53842054 Msa0411560:intron
TGTTATACTTCCTCTGGATG+AGG 0.558694 3_2:+53842906 Msa0411560:CDS
ACTCCCATTCTCAATTTGGA+AGG 0.560845 3_2:-53841558 None:intergenic
GCATTGATTCCACCTTCTGT+AGG 0.568687 3_2:+53843492 Msa0411560:CDS
TGGAAGGAAGTTCACAACTC+AGG 0.571522 3_2:-53841542 None:intergenic
GAGAAGAATAACATAATATG+TGG 0.575707 3_2:-53841857 None:intergenic
GAGACGGAAGCAGCATATGG+TGG 0.576235 3_2:-53841600 None:intergenic
CTAATTGCAGCCAAAATCTG+AGG 0.577448 3_2:-53844039 None:intergenic
TCTACATATCCTACAGAAGG+TGG 0.586098 3_2:-53843501 None:intergenic
TGATCTTCTAAGATCATAGA+GGG 0.597619 3_2:+53843928 Msa0411560:three_prime_UTR
TCATCTACATATCCTACAGA+AGG 0.617979 3_2:-53843504 None:intergenic
ATACCTTGGAGAAGCAGAGA+CGG 0.631916 3_2:-53841616 None:intergenic
TGAGAAAGAAGGCTGCGTCG+AGG 0.645568 3_2:-53843786 None:intergenic
AGTTGAACTTCAAATACCAA+AGG 0.649057 3_2:-53843819 None:intergenic
ACTGTGATACCAAATGTGCA+CGG 0.684520 3_2:-53844072 None:intergenic
GAAGGACCAGAAGCACACAG+TGG 0.691666 3_2:+53842652 Msa0411560:CDS
CTAACCTGGTCCTCATCCAG+AGG 0.693869 3_2:-53842916 None:intergenic
TCATGAATCCAGGTGCACTG+AGG 0.729193 3_2:+53841746 Msa0411560:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAACATGATATTGTTTTT+AGG - chr3_2:53841690-53841709 None:intergenic 15.0%
!! TTCATGATATGAATTAATAA+TGG + chr3_2:53842737-53842756 Msa0411560:intron 15.0%
!! TCATGATATGAATTAATAAT+GGG + chr3_2:53842738-53842757 Msa0411560:intron 15.0%
!!! TATTTTCATAAAGAAATAGA+AGG + chr3_2:53843961-53843980 Msa0411560:three_prime_UTR 15.0%
!!! ATTTTCATAAAGAAATAGAA+GGG + chr3_2:53843962-53843981 Msa0411560:three_prime_UTR 15.0%
!! CACAATATAAAAGTTTAAAG+AGG - chr3_2:53842368-53842387 None:intergenic 20.0%
!!! CTCTTTAAACTTTTATATTG+TGG + chr3_2:53842366-53842385 Msa0411560:intron 20.0%
!! CAAATAGAAATGAAAATTCT+TGG + chr3_2:53842499-53842518 Msa0411560:intron 20.0%
!! ATGTATTTATTCACAACTAA+AGG - chr3_2:53842575-53842594 None:intergenic 20.0%
!!! ATTGAGTTGAAGAATATAAA+GGG - chr3_2:53843032-53843051 None:intergenic 20.0%
!!! AATTGAGTTGAAGAATATAA+AGG - chr3_2:53843033-53843052 None:intergenic 20.0%
!!! TTGTTTAAAACAGATGATAT+TGG + chr3_2:53843102-53843121 Msa0411560:intron 20.0%
!!! TGTTTAAAACAGATGATATT+GGG + chr3_2:53843103-53843122 Msa0411560:intron 20.0%
!! ATATATAAGAAAATCATGAG+AGG - chr3_2:53843210-53843229 None:intergenic 20.0%
! TAGAATGAAATGAATTAGAG+AGG - chr3_2:53841651-53841670 None:intergenic 25.0%
! CGAAAAAATATTGTTCAAGA+AGG + chr3_2:53841808-53841827 Msa0411560:CDS 25.0%
! GAGAAGAATAACATAATATG+TGG - chr3_2:53841860-53841879 None:intergenic 25.0%
!!! TATTTTTATGTGAAGCATCT+AGG + chr3_2:53842034-53842053 Msa0411560:intron 25.0%
! CACAATTTAAACACACAATA+TGG - chr3_2:53842242-53842261 None:intergenic 25.0%
! CATATTGTGTGTTTAAATTG+TGG + chr3_2:53842240-53842259 Msa0411560:intron 25.0%
! TTCAAATTAGTTGTTACTGA+AGG + chr3_2:53842628-53842647 Msa0411560:intron 25.0%
! TCAAATTAGTTGTTACTGAA+GGG + chr3_2:53842629-53842648 Msa0411560:intron 25.0%
! TTGAAAGAAATAAACTAACC+TGG - chr3_2:53842933-53842952 None:intergenic 25.0%
!! AGTTTATTTCTTTCAACTTG+TGG + chr3_2:53842937-53842956 Msa0411560:intron 25.0%
!! GTTTATTTCTTTCAACTTGT+GGG + chr3_2:53842938-53842957 Msa0411560:intron 25.0%
! ACTCAATTTATCATAAACTG+AGG + chr3_2:53843045-53843064 Msa0411560:intron 25.0%
!! GTTTAAAACAGATGATATTG+GGG + chr3_2:53843104-53843123 Msa0411560:intron 25.0%
!! TTTTTGTGTTTATTGCAGTT+TGG + chr3_2:53843762-53843781 Msa0411560:intron 25.0%
!!! TAATTAAATTCAGCTTGTTG+TGG - chr3_2:53843864-53843883 None:intergenic 25.0%
!! TAGTTTTTGCAGGATTATAA+CGG - chr3_2:53844101-53844120 None:intergenic 25.0%
!! GTATAATATGTAGTTTTTGC+AGG - chr3_2:53844111-53844130 None:intergenic 25.0%
TAATACTCCCATTCTCAATT+TGG - chr3_2:53841565-53841584 None:intergenic 30.0%
AGAGGAAACAATATATACCT+TGG - chr3_2:53841633-53841652 None:intergenic 30.0%
! AGGTTGATTGTTCAGTTTAT+CGG + chr3_2:53841828-53841847 Msa0411560:CDS 30.0%
GACTTACATGTTAGATTTCT+TGG + chr3_2:53842107-53842126 Msa0411560:intron 30.0%
TGCTAGGATATCATATATCA+AGG - chr3_2:53842284-53842303 None:intergenic 30.0%
TAAAAGTTTAAAGAGGTCAC+TGG - chr3_2:53842361-53842380 None:intergenic 30.0%
TACTGTCAAACAATATGATG+CGG - chr3_2:53842440-53842459 None:intergenic 30.0%
CAAATTAGTTGTTACTGAAG+GGG + chr3_2:53842630-53842649 Msa0411560:intron 30.0%
TTGAATTCAATTGTGTATGC+AGG + chr3_2:53842683-53842702 Msa0411560:CDS 30.0%
!!! CAAATGGATACTTTGTTTTC+AGG + chr3_2:53842710-53842729 Msa0411560:CDS 30.0%
TTGACTTAAGCACAATACAA+GGG - chr3_2:53842808-53842827 None:intergenic 30.0%
! ATTGACTTAAGCACAATACA+AGG - chr3_2:53842809-53842828 None:intergenic 30.0%
GATTACTTTCTCCATTGAAT+TGG - chr3_2:53842885-53842904 None:intergenic 30.0%
TTTACTATTCCTTTCTGATG+AGG + chr3_2:53842983-53843002 Msa0411560:intron 30.0%
AATAAGAAACCTCATCAGAA+AGG - chr3_2:53842995-53843014 None:intergenic 30.0%
AAAATCATGAGAGGAAATAC+TGG - chr3_2:53843201-53843220 None:intergenic 30.0%
!! TGAAATGACTCATGTCATTT+TGG + chr3_2:53843319-53843338 Msa0411560:intron 30.0%
CATACATGTATATGACAATC+TGG + chr3_2:53843355-53843374 Msa0411560:intron 30.0%
ACTAAATTATACAGGACTAG+TGG - chr3_2:53843390-53843409 None:intergenic 30.0%
! TGTATCTTTTGATGTCATTG+TGG + chr3_2:53843436-53843455 Msa0411560:intron 30.0%
! AGTTTTGCACTTGAATACAA+AGG + chr3_2:53843555-53843574 Msa0411560:intron 30.0%
! ACTTTACTCTCAAACTTGTT+TGG + chr3_2:53843652-53843671 Msa0411560:intron 30.0%
AGTTGAACTTCAAATACCAA+AGG - chr3_2:53843822-53843841 None:intergenic 30.0%
!! TTGATCTTCTAAGATCATAG+AGG + chr3_2:53843927-53843946 Msa0411560:three_prime_UTR 30.0%
!! TGATCTTCTAAGATCATAGA+GGG + chr3_2:53843928-53843947 Msa0411560:three_prime_UTR 30.0%
TTATACCGTTTACGAAATCT+TGG + chr3_2:53844125-53844144 Msa0411560:three_prime_UTR 30.0%
CCTTACCAATTACAATGTTT+CGG + chr3_2:53844150-53844169 Msa0411560:three_prime_UTR 30.0%
ATTGTCCGAAACATTGTAAT+TGG - chr3_2:53844158-53844177 None:intergenic 30.0%
ACTTCCTTCCAAATTGAGAA+TGG + chr3_2:53841554-53841573 Msa0411560:CDS 35.0%
CTTCCTTCCAAATTGAGAAT+GGG + chr3_2:53841555-53841574 Msa0411560:CDS 35.0%
CTTAAAACTCTCATGAATCC+AGG + chr3_2:53841736-53841755 Msa0411560:intron 35.0%
ATGTTATTCTTCTCCTGCTT+TGG + chr3_2:53841866-53841885 Msa0411560:CDS 35.0%
TGAATGAACCAGAAGTCATA+AGG + chr3_2:53841907-53841926 Msa0411560:CDS 35.0%
AACTTTGAGCTTGCATTTAC+TGG + chr3_2:53842171-53842190 Msa0411560:intron 35.0%
AACCACAATTGCAACCAAAT+TGG - chr3_2:53842324-53842343 None:intergenic 35.0%
!! GAGAACATAGTTCTGAATTG+CGG - chr3_2:53842418-53842437 None:intergenic 35.0%
ATAACTGTCCTAATGTTGCT+TGG + chr3_2:53842827-53842846 Msa0411560:intron 35.0%
GTATGAAACCAAGCAACATT+AGG - chr3_2:53842838-53842857 None:intergenic 35.0%
AGTACAGTAGACCAATTCAA+TGG + chr3_2:53842871-53842890 Msa0411560:intron 35.0%
TAATCCTGTTATACTTCCTC+TGG + chr3_2:53842900-53842919 Msa0411560:CDS 35.0%
AAACACATTTCAGAGTTCTC+TGG - chr3_2:53842966-53842985 None:intergenic 35.0%
ATACATGTATGCCAAAGGTT+TGG - chr3_2:53843346-53843365 None:intergenic 35.0%
GTCATATACATGTATGCCAA+AGG - chr3_2:53843351-53843370 None:intergenic 35.0%
CAGTCACGACTAAATTATAC+AGG - chr3_2:53843398-53843417 None:intergenic 35.0%
!!! TCGTGACTGTTATTTTTGTG+TGG + chr3_2:53843409-53843428 Msa0411560:intron 35.0%
TCATCTACATATCCTACAGA+AGG - chr3_2:53843507-53843526 None:intergenic 35.0%
AAACTAACCTCTTCTGGTAT+TGG - chr3_2:53843540-53843559 None:intergenic 35.0%
AGAACAAAGCAGTGTTAGAT+AGG + chr3_2:53843990-53844009 Msa0411560:three_prime_UTR 35.0%
CCGAAACATTGTAATTGGTA+AGG - chr3_2:53844153-53844172 None:intergenic 35.0%
ACTCCCATTCTCAATTTGGA+AGG - chr3_2:53841561-53841580 None:intergenic 40.0%
GGTTCATTCATGTCCATGAT+TGG - chr3_2:53841897-53841916 None:intergenic 40.0%
CAGACAAACCTTATGACTTC+TGG - chr3_2:53841918-53841937 None:intergenic 40.0%
ACCTTGAATTCTCACTCCAT+TGG - chr3_2:53842073-53842092 None:intergenic 40.0%
TTAGTTGTTACTGAAGGGGA+AGG + chr3_2:53842634-53842653 Msa0411560:intron 40.0%
! TCATCCAGAGGAAGTATAAC+AGG - chr3_2:53842907-53842926 None:intergenic 40.0%
TGTTATACTTCCTCTGGATG+AGG + chr3_2:53842906-53842925 Msa0411560:CDS 40.0%
GATGATATTGGGGTTAAAGC+AGG + chr3_2:53843114-53843133 Msa0411560:intron 40.0%
AGAGGAAATACTGGTATGTC+AGG - chr3_2:53843192-53843211 None:intergenic 40.0%
!! GTCATTTTGGTCCAAACCTT+TGG + chr3_2:53843332-53843351 Msa0411560:intron 40.0%
TCTACATATCCTACAGAAGG+TGG - chr3_2:53843504-53843523 None:intergenic 40.0%
AGTGCAAAACTAACCTCTTC+TGG - chr3_2:53843546-53843565 None:intergenic 40.0%
ACCACTTCAGCTATGTAATG+CGG + chr3_2:53843687-53843706 Msa0411560:intron 40.0%
CAAAGCAGTGTTAGATAGGA+TGG + chr3_2:53843994-53844013 Msa0411560:three_prime_UTR 40.0%
! CAGCATACATCCTCAGATTT+TGG + chr3_2:53844029-53844048 Msa0411560:three_prime_UTR 40.0%
CTAATTGCAGCCAAAATCTG+AGG - chr3_2:53844042-53844061 None:intergenic 40.0%
ACTGTGATACCAAATGTGCA+CGG - chr3_2:53844075-53844094 None:intergenic 40.0%
AGGCACCAAGATTTCGTAAA+CGG - chr3_2:53844133-53844152 None:intergenic 40.0%
TGGAAGGAAGTTCACAACTC+AGG - chr3_2:53841545-53841564 None:intergenic 45.0%
ATACCTTGGAGAAGCAGAGA+CGG - chr3_2:53841619-53841638 None:intergenic 45.0%
!! AGGACTTTGAAGCTTGCCAA+TGG + chr3_2:53842054-53842073 Msa0411560:intron 45.0%
GCCAATGGAGTGAGAATTCA+AGG + chr3_2:53842069-53842088 Msa0411560:CDS 45.0%
CTAGCAAAACGCAGCATATG+CGG + chr3_2:53842298-53842317 Msa0411560:intron 45.0%
GGCCAATTTGGTTGCAATTG+TGG + chr3_2:53842319-53842338 Msa0411560:intron 45.0%
AAATCTCCACTGTGTGCTTC+TGG - chr3_2:53842661-53842680 None:intergenic 45.0%
! AGAAGCACACAGTGGAGATT+TGG + chr3_2:53842660-53842679 Msa0411560:CDS 45.0%
GATGTCATTGTGGTCACTCT+TGG + chr3_2:53843446-53843465 Msa0411560:intron 45.0%
TCACTCTTGGCTTCACTTGT+AGG + chr3_2:53843459-53843478 Msa0411560:intron 45.0%
!! GCATTGATTCCACCTTCTGT+AGG + chr3_2:53843492-53843511 Msa0411560:CDS 45.0%
CTTGAAGCCAATACCAGAAG+AGG + chr3_2:53843530-53843549 Msa0411560:intron 45.0%
TCCGCATTACATAGCTGAAG+TGG - chr3_2:53843691-53843710 None:intergenic 45.0%
GCTCTTGTGCATGAGAAAGA+AGG - chr3_2:53843800-53843819 None:intergenic 45.0%
TTCTCATGCACAAGAGCCTT+TGG + chr3_2:53843803-53843822 Msa0411560:CDS 45.0%
AAGATAACGCCGTGCACATT+TGG + chr3_2:53844063-53844082 Msa0411560:three_prime_UTR 45.0%
TCATGAATCCAGGTGCACTG+AGG + chr3_2:53841746-53841765 Msa0411560:intron 50.0%
ATGATTGGTGCAGCCAAAGC+AGG - chr3_2:53841882-53841901 None:intergenic 50.0%
TGCTTTGGCTGCACCAATCA+TGG + chr3_2:53841881-53841900 Msa0411560:CDS 50.0%
GTCACTCGTGTTTGACGCAA+AGG + chr3_2:53842200-53842219 Msa0411560:intron 50.0%
! CGCATATGCTGCGTTTTGCT+AGG - chr3_2:53842300-53842319 None:intergenic 50.0%
! GGTCTGAAACTGCAAACTGC+AGG - chr3_2:53842397-53842416 None:intergenic 50.0%
TGTGTATGCAGGCGTGCAAA+TGG + chr3_2:53842694-53842713 Msa0411560:CDS 50.0%
GGGTTAAAGCAGGTCTTGAC+TGG + chr3_2:53843124-53843143 Msa0411560:CDS 50.0%
GTCTTGACTGGCATGAGAGT+TGG + chr3_2:53843136-53843155 Msa0411560:CDS 50.0%
TTGACTGGCATGAGAGTTGG+TGG + chr3_2:53843139-53843158 Msa0411560:CDS 50.0%
GAGACGGAAGCAGCATATGG+TGG - chr3_2:53841603-53841622 None:intergenic 55.0%
GCAGAGACGGAAGCAGCATA+TGG - chr3_2:53841606-53841625 None:intergenic 55.0%
CTTCCGTCTCTGCTTCTCCA+AGG + chr3_2:53841613-53841632 Msa0411560:CDS 55.0%
CTTTGCATCCTCAGTGCACC+TGG - chr3_2:53841757-53841776 None:intergenic 55.0%
CGCAGCATATGCGGCCAATT+TGG + chr3_2:53842307-53842326 Msa0411560:intron 55.0%
! GAAGGACCAGAAGCACACAG+TGG + chr3_2:53842652-53842671 Msa0411560:CDS 55.0%
ACTTCCTCTGGATGAGGACC+AGG + chr3_2:53842912-53842931 Msa0411560:CDS 55.0%
CTAACCTGGTCCTCATCCAG+AGG - chr3_2:53842919-53842938 None:intergenic 55.0%
GAGAAAGAAGGCTGCGTCGA+GGG - chr3_2:53843788-53843807 None:intergenic 55.0%
TGAGAAAGAAGGCTGCGTCG+AGG - chr3_2:53843789-53843808 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr3_2 gene 53841516 53844265 53841516 ID=Msa0411560;Name=Msa0411560
chr3_2 mRNA 53841516 53844265 53841516 ID=Msa0411560-mRNA-1;Parent=Msa0411560;Name=Msa0411560-mRNA-1;_AED=0.32;_eAED=0.32;_QI=0|0.85|0.75|1|0.85|0.87|8|381|218
chr3_2 exon 53841516 53841634 53841516 ID=Msa0411560-mRNA-1:exon:10848;Parent=Msa0411560-mRNA-1
chr3_2 exon 53841758 53841928 53841758 ID=Msa0411560-mRNA-1:exon:10849;Parent=Msa0411560-mRNA-1
chr3_2 exon 53842056 53842090 53842056 ID=Msa0411560-mRNA-1:exon:10850;Parent=Msa0411560-mRNA-1
chr3_2 exon 53842650 53842731 53842650 ID=Msa0411560-mRNA-1:exon:10851;Parent=Msa0411560-mRNA-1
chr3_2 exon 53842873 53842933 53842873 ID=Msa0411560-mRNA-1:exon:10852;Parent=Msa0411560-mRNA-1
chr3_2 exon 53843115 53843160 53843115 ID=Msa0411560-mRNA-1:exon:10853;Parent=Msa0411560-mRNA-1
chr3_2 exon 53843481 53843518 53843481 ID=Msa0411560-mRNA-1:exon:10854;Parent=Msa0411560-mRNA-1
chr3_2 exon 53843780 53844265 53843780 ID=Msa0411560-mRNA-1:exon:10855;Parent=Msa0411560-mRNA-1
chr3_2 CDS 53841516 53841634 53841516 ID=Msa0411560-mRNA-1:cds;Parent=Msa0411560-mRNA-1
chr3_2 CDS 53841758 53841928 53841758 ID=Msa0411560-mRNA-1:cds;Parent=Msa0411560-mRNA-1
chr3_2 CDS 53842056 53842090 53842056 ID=Msa0411560-mRNA-1:cds;Parent=Msa0411560-mRNA-1
chr3_2 CDS 53842650 53842731 53842650 ID=Msa0411560-mRNA-1:cds;Parent=Msa0411560-mRNA-1
chr3_2 CDS 53842873 53842933 53842873 ID=Msa0411560-mRNA-1:cds;Parent=Msa0411560-mRNA-1
chr3_2 CDS 53843115 53843160 53843115 ID=Msa0411560-mRNA-1:cds;Parent=Msa0411560-mRNA-1
chr3_2 CDS 53843481 53843518 53843481 ID=Msa0411560-mRNA-1:cds;Parent=Msa0411560-mRNA-1
chr3_2 CDS 53843780 53843884 53843780 ID=Msa0411560-mRNA-1:cds;Parent=Msa0411560-mRNA-1
chr3_2 three_prime_UTR 53843885 53844265 53843885 ID=Msa0411560-mRNA-1:three_prime_utr;Parent=Msa0411560-mRNA-1
Gene Sequence

>Msa0411560

AGAGATAATGTTCTACTTGGTTTGAGCCTGAGTTGTGAACTTCCTTCCAAATTGAGAATGGGAGTATTATCATTTCTCTCACTTCCACCATATGCTGCTTCCGTCTCTGCTTCTCCAAGGTGCACTGAGGATGCAAAGAGCTCGAACAACAAAATTTCTACATTAACAGCGAAAAAATATTGTTCAAGAAGGTTGATTGTTCAGTTTATCGGTATTAACCACATATTATGTTATTCTTCTCCTGCTTTGGCTGCACCAATCATGGACATGAATGAACCAGAAGTCATAAGGACTTTGAAGCTTGCCAATGGAGTGAGAATTCAAGGGGAAGGACCAGAAGCACACAGTGGAGATTTGGTTGAATTCAATTGTGTATGCAGGCGTGCAAATGGATACTTTGTTTTCAGTACAGTAGACCAATTCAATGGAGAAAGTAATCCTGTTATACTTCCTCTGGATGAGGACCAGATGATATTGGGGTTAAAGCAGGTCTTGACTGGCATGAGAGTTGGTGGAAAGAGAAGAGCATTGATTCCACCTTCTGTAGGATATTTTGGCCCTCGACGCAGCCTTCTTTCTCATGCACAAGAGCCTTTGGTATTTGAAGTTCAACTCTTGAAAATTCTGAGTGTTCCACAACAAGCTGAATTTAATTAG

Protein sequence

>Msa0411560

RDNVLLGLSLSCELPSKLRMGVLSFLSLPPYAASVSASPRCTEDAKSSNNKISTLTAKKYCSRRLIVQFIGINHILCYSSPALAAPIMDMNEPEVIRTLKLANGVRIQGEGPEAHSGDLVEFNCVCRRANGYFVFSTVDQFNGESNPVILPLDEDQMILGLKQVLTGMRVGGKRRALIPPSVGYFGPRRSLLSHAQEPLVFEVQLLKILSVPQQAEFN*