Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353430 | XP_024641079.1 | 97.692 | 910 | 20 | 1 | 1 | 910 | 1 | 909 | 0.0 | 1845 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353430 | sp|O14053|UTP21_SCHPO | 35.868 | 881 | 506 | 16 | 3 | 868 | 23 | 859 | 0.0 | 554 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353430 | A0A396HIM7 | 97.692 | 910 | 20 | 1 | 1 | 910 | 1 | 909 | 0.0 | 1845 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0019390 | Msa1353430 | 0.803316 | 3.695494e-49 | -8.615850e-47 |
| Msa0648780 | Msa1353430 | 0.829344 | 5.426534e-55 | -8.615850e-47 |
| Msa0687440 | Msa1353430 | 0.829395 | 5.272227e-55 | -8.615850e-47 |
| Msa1275680 | Msa1353430 | 0.829307 | 5.538610e-55 | -8.615850e-47 |
| Msa1330560 | Msa1353430 | 0.812425 | 4.268381e-51 | -8.615850e-47 |
| Msa1027640 | Msa1353430 | 0.832147 | 1.116079e-55 | -8.615850e-47 |
| Msa1066190 | Msa1353430 | 0.834105 | 3.632627e-56 | -8.615850e-47 |
| Msa0272010 | Msa1353430 | 0.824549 | 7.601026e-54 | -8.615850e-47 |
| Msa0318520 | Msa1353430 | 0.807135 | 5.860896e-50 | -8.615850e-47 |
| Msa1191830 | Msa1353430 | 0.843622 | 1.251176e-58 | -8.615850e-47 |
| Msa1209850 | Msa1353430 | 0.801483 | 8.816783e-49 | -8.615850e-47 |
| Msa0966210 | Msa1353430 | 0.884028 | 2.719878e-71 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353430 | MtrunA17_Chr6g0488791 | 97.692 | 910 | 20 | 1 | 1 | 910 | 1 | 909 | 0.0 | 1845 |
| Msa1353430 | MtrunA17_Chr2g0281451 | 25.468 | 267 | 178 | 9 | 81 | 342 | 3 | 253 | 1.49e-12 | 72.0 |
| Msa1353430 | MtrunA17_Chr6g0448921 | 25.735 | 272 | 171 | 10 | 81 | 342 | 4 | 254 | 1.89e-12 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1353430 | AT4G04940.1 | 72.637 | 910 | 245 | 3 | 1 | 907 | 1 | 909 | 0.0 | 1390 |
| Msa1353430 | AT4G04940.2 | 71.734 | 796 | 221 | 3 | 115 | 907 | 1 | 795 | 0.0 | 1203 |
| Msa1353430 | AT1G61210.3 | 26.740 | 273 | 167 | 11 | 81 | 342 | 3 | 253 | 2.39e-15 | 81.6 |
| Msa1353430 | AT1G61210.3 | 26.875 | 160 | 110 | 4 | 471 | 626 | 55 | 211 | 6.91e-14 | 76.6 |
| Msa1353430 | AT1G61210.2 | 26.740 | 273 | 167 | 11 | 81 | 342 | 3 | 253 | 2.61e-15 | 81.3 |
| Msa1353430 | AT1G61210.2 | 26.875 | 160 | 110 | 4 | 471 | 626 | 55 | 211 | 7.04e-14 | 76.6 |
| Msa1353430 | AT1G61210.1 | 26.740 | 273 | 167 | 11 | 81 | 342 | 3 | 253 | 3.10e-15 | 81.3 |
| Msa1353430 | AT1G61210.1 | 26.875 | 160 | 110 | 4 | 471 | 626 | 55 | 211 | 7.23e-14 | 76.6 |
| Msa1353430 | AT1G11160.3 | 28.125 | 160 | 108 | 4 | 471 | 626 | 13 | 169 | 8.91e-15 | 79.7 |
| Msa1353430 | AT1G11160.3 | 28.947 | 190 | 125 | 6 | 154 | 342 | 31 | 211 | 7.08e-14 | 76.6 |
| Msa1353430 | AT1G11160.4 | 28.125 | 160 | 108 | 4 | 471 | 626 | 55 | 211 | 9.73e-15 | 79.3 |
| Msa1353430 | AT1G11160.4 | 25.468 | 267 | 178 | 9 | 81 | 342 | 3 | 253 | 1.38e-14 | 79.0 |
| Msa1353430 | AT1G11160.2 | 28.125 | 160 | 108 | 4 | 471 | 626 | 55 | 211 | 1.03e-14 | 79.3 |
| Msa1353430 | AT1G11160.2 | 25.468 | 267 | 178 | 9 | 81 | 342 | 3 | 253 | 1.54e-14 | 79.0 |
| Msa1353430 | AT1G11160.1 | 28.125 | 160 | 108 | 4 | 471 | 626 | 55 | 211 | 1.07e-14 | 79.3 |
| Msa1353430 | AT1G11160.1 | 25.468 | 267 | 178 | 9 | 81 | 342 | 3 | 253 | 1.59e-14 | 79.0 |
| Msa1353430 | AT5G08390.1 | 27.068 | 266 | 175 | 8 | 81 | 342 | 4 | 254 | 1.26e-14 | 79.0 |
| Msa1353430 | AT5G08390.1 | 24.204 | 157 | 116 | 3 | 472 | 626 | 57 | 212 | 1.95e-11 | 68.6 |
| Msa1353430 | AT5G23430.1 | 25.830 | 271 | 172 | 9 | 81 | 342 | 4 | 254 | 1.27e-14 | 79.0 |
| Msa1353430 | AT5G23430.1 | 24.841 | 157 | 115 | 3 | 472 | 626 | 57 | 212 | 4.35e-11 | 67.4 |
| Msa1353430 | AT5G23430.3 | 25.830 | 271 | 172 | 9 | 81 | 342 | 4 | 254 | 1.52e-14 | 78.6 |
| Msa1353430 | AT5G23430.3 | 24.841 | 157 | 115 | 3 | 472 | 626 | 57 | 212 | 4.57e-11 | 67.4 |
| Msa1353430 | AT5G23430.2 | 25.830 | 271 | 172 | 9 | 81 | 342 | 4 | 254 | 1.52e-14 | 78.6 |
| Msa1353430 | AT5G23430.2 | 24.841 | 157 | 115 | 3 | 472 | 626 | 57 | 212 | 4.57e-11 | 67.4 |
Find 223 sgRNAs with CRISPR-Local
Find 546 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCAGTTCCATTGCTTTC+TGG | -0.057605 | tig0013377:+54662 | Msa1353430:CDS |
| TAGAAACTCAAAATTATTTC+TGG | 0.114239 | tig0013377:-55321 | None:intergenic |
| TGGATGGAAGTCTTAGAATT+TGG | 0.184320 | tig0013377:+53664 | Msa1353430:CDS |
| GGACTCTTCAAGCATGAATT+TGG | 0.196098 | tig0013377:-55615 | None:intergenic |
| GATTTCACTTTCGCTGCTTT+TGG | 0.205987 | tig0013377:+47151 | Msa1353430:CDS |
| GGACAGCCCCTTCTGGCTTC+TGG | 0.209939 | tig0013377:+49203 | Msa1353430:CDS |
| GAAATCAGGTTAAAAGCTTT+TGG | 0.211091 | tig0013377:+55742 | Msa1353430:three_prime_UTR |
| ACTACCCATGTTGATCAAAA+TGG | 0.216761 | tig0013377:+53777 | Msa1353430:CDS |
| CTTCAGTTCCATTGCTTTCT+GGG | 0.219128 | tig0013377:+54663 | Msa1353430:CDS |
| TCCTCTAATGATACCTTTCC+AGG | 0.223878 | tig0013377:-54701 | None:intergenic |
| GCGACATTCCAAGGGTAAAA+TGG | 0.225302 | tig0013377:+46934 | Msa1353430:exon |
| AGAACAACCAACATCCAATT+TGG | 0.240866 | tig0013377:-53296 | None:intergenic |
| GCATGTAAACAGGTTCTTAT+TGG | 0.255726 | tig0013377:+48510 | Msa1353430:intron |
| GCAAGAGAAGTAATCTTCTT+AGG | 0.274440 | tig0013377:-47118 | None:intergenic |
| TATTCTCAGTCTTGATGTTC+AGG | 0.286517 | tig0013377:+48007 | Msa1353430:CDS |
| TTGCTAATATATCCATGTTT+GGG | 0.291782 | tig0013377:-53755 | None:intergenic |
| AATGTCGCCGCCGGTGTTCT+AGG | 0.294855 | tig0013377:-46919 | None:intergenic |
| GAGGAAGTCCTAACCTTTAC+AGG | 0.295653 | tig0013377:-52663 | None:intergenic |
| AAGCTTTGCCACTGGCTCTT+TGG | 0.298514 | tig0013377:-54418 | None:intergenic |
| TCCGCTTATACTTGTATTGA+TGG | 0.300635 | tig0013377:+55706 | Msa1353430:three_prime_UTR |
| CTGGCTTCTGGAGGTTCATC+TGG | 0.306643 | tig0013377:+49215 | Msa1353430:CDS |
| TCCAGATACTTACCTTAATA+AGG | 0.315613 | tig0013377:+48130 | Msa1353430:CDS |
| GATATTCTTGAAGACAAAAT+TGG | 0.316013 | tig0013377:+55985 | Msa1353430:three_prime_UTR |
| ATCTCCATCAACTCTGGATA+TGG | 0.316374 | tig0013377:+55184 | Msa1353430:CDS |
| ACCACCAGCTGTCCCTAAAA+TGG | 0.318292 | tig0013377:-52960 | None:intergenic |
| CATCTTCTTGTGGGCATTCA+AGG | 0.319568 | tig0013377:+48034 | Msa1353430:CDS |
| CGGTGTTCTAGGTTACGTTT+TGG | 0.324864 | tig0013377:-46908 | None:intergenic |
| GGGAAAGCCGGAGCATCTTT+AGG | 0.327151 | tig0013377:-54349 | None:intergenic |
| ATGGCTTCTTTCGTCCAGTA+TGG | 0.331971 | tig0013377:+53644 | Msa1353430:CDS |
| GTTGCTAATATATCCATGTT+TGG | 0.333368 | tig0013377:-53756 | None:intergenic |
| GGATGGAAGTCTTAGAATTT+GGG | 0.333460 | tig0013377:+53665 | Msa1353430:CDS |
| CATGTAAACAGGTTCTTATT+GGG | 0.334236 | tig0013377:+48511 | Msa1353430:intron |
| TTTAGATGGACAGCCCCTTC+TGG | 0.340805 | tig0013377:+49196 | Msa1353430:intron |
| GCGGAGTCTTAAATCCAAAT+TGG | 0.344934 | tig0013377:+53282 | Msa1353430:CDS |
| ATTGAAGAATATAGAGAAAA+CGG | 0.358795 | tig0013377:-54784 | None:intergenic |
| AAGATGTGCTCACCTTATTA+AGG | 0.360143 | tig0013377:-48142 | None:intergenic |
| ATTGTTTACCATCGTTATAA+TGG | 0.363546 | tig0013377:+53328 | Msa1353430:CDS |
| GATACTCTAGTTGAGCATTC+TGG | 0.368930 | tig0013377:+54304 | Msa1353430:CDS |
| TGGGGAGAAGATGAAGAAAA+TGG | 0.369770 | tig0013377:-46888 | None:intergenic |
| ACCTTATTAAGGTAAGTATC+TGG | 0.369983 | tig0013377:-48131 | None:intergenic |
| AATGAAAGTGTAACTAAATC+AGG | 0.370674 | tig0013377:-54391 | None:intergenic |
| AGACTTGTTCGTAAATTTGA+AGG | 0.377882 | tig0013377:+53576 | Msa1353430:CDS |
| CATCCGTTACGATGAAGAAT+TGG | 0.379794 | tig0013377:+48689 | Msa1353430:CDS |
| CCCTGTGAATTCCAGATTGA+AGG | 0.385512 | tig0013377:-53000 | None:intergenic |
| CTACCCATGTTGATCAAAAT+GGG | 0.390528 | tig0013377:+53778 | Msa1353430:CDS |
| GTCCTAACCTTTACAGGCGT+TGG | 0.395238 | tig0013377:-52657 | None:intergenic |
| CTTGCATATGAATCGACATT+TGG | 0.398727 | tig0013377:-54232 | None:intergenic |
| TGTTATTAGCATATGGAATC+TGG | 0.399911 | tig0013377:+49238 | Msa1353430:CDS |
| GACTCTTCAAGCATGAATTT+GGG | 0.401326 | tig0013377:-55614 | None:intergenic |
| GATCAATTTAGACATTATAA+AGG | 0.409214 | tig0013377:+54441 | Msa1353430:CDS |
| ACACATTCTTTCTGCTGGCC+AGG | 0.414729 | tig0013377:+50598 | Msa1353430:CDS |
| AGCAAGGCACTATGCAGCTT+TGG | 0.417073 | tig0013377:+48538 | Msa1353430:CDS |
| CATCTGGTGTTATTAGCATA+TGG | 0.418142 | tig0013377:+49231 | Msa1353430:CDS |
| GTGAAATCGTTATTGTTGTT+TGG | 0.420707 | tig0013377:+47978 | Msa1353430:CDS |
| GAAAAGTTCAACCTTCAATC+TGG | 0.422796 | tig0013377:+52989 | Msa1353430:CDS |
| TTGAAGAATATAGAGAAAAC+GGG | 0.427715 | tig0013377:-54783 | None:intergenic |
| AAAATTTAATAAATGAAAAC+AGG | 0.431363 | tig0013377:-55774 | None:intergenic |
| GGTATTTGCTTATCTTGAGT+TGG | 0.432192 | tig0013377:-54370 | None:intergenic |
| GTATTTGCTTATCTTGAGTT+GGG | 0.433079 | tig0013377:-54369 | None:intergenic |
| ACAAAATTTGCCCTCCTATG+AGG | 0.435622 | tig0013377:-55856 | None:intergenic |
| GCTCTAGATGTTGTTGCTGT+TGG | 0.443800 | tig0013377:+48636 | Msa1353430:CDS |
| CTGAAATTAGAGAGCGTGAT+TGG | 0.445206 | tig0013377:+52532 | Msa1353430:CDS |
| TCTAAGACTTCCATCCATAC+TGG | 0.450343 | tig0013377:-53658 | None:intergenic |
| GAGAAATCAGAGCAGAAATC+AGG | 0.451770 | tig0013377:+55728 | Msa1353430:three_prime_UTR |
| GCCTGGAAAGGTATCATTAG+AGG | 0.455965 | tig0013377:+54700 | Msa1353430:CDS |
| GAAGTCTCCACACATATGCT+TGG | 0.457584 | tig0013377:-52587 | None:intergenic |
| GGGATATCAAGGAGATATAA+AGG | 0.459764 | tig0013377:+53120 | Msa1353430:CDS |
| TTGAGTCGTTGAACGGAGAA+AGG | 0.463350 | tig0013377:-47004 | None:intergenic |
| CGACATTCCAAGGGTAAAAT+GGG | 0.463746 | tig0013377:+46935 | Msa1353430:exon |
| TCCTCAACAATTTGAAGTTT+AGG | 0.465025 | tig0013377:+55635 | Msa1353430:three_prime_UTR |
| GGGGAAATATTGTTTGAGCC+TGG | 0.465198 | tig0013377:+54683 | Msa1353430:CDS |
| TATGATATACTCATCCTCAT+AGG | 0.465260 | tig0013377:+55842 | Msa1353430:three_prime_UTR |
| GTTAATAGGATCAACAAAGT+AGG | 0.466327 | tig0013377:+50972 | Msa1353430:intron |
| TCTTCATCTTGCCAGATACA+TGG | 0.467591 | tig0013377:+55460 | Msa1353430:intron |
| GACTGCTAGAGAACATTGCC+TGG | 0.469186 | tig0013377:-54210 | None:intergenic |
| ATAATGAATTTCAGGTCTCC+TGG | 0.469274 | tig0013377:+53503 | Msa1353430:intron |
| AGATACATGGCGATACAATT+CGG | 0.469787 | tig0013377:+55473 | Msa1353430:intron |
| ACACCGGCGGCGACATTCCA+AGG | 0.470881 | tig0013377:+46925 | Msa1353430:five_prime_UTR |
| CTCTCAACCTAAAGATGCTC+CGG | 0.471862 | tig0013377:+54342 | Msa1353430:CDS |
| AATTAGATTGTTTGATGTTG+TGG | 0.472460 | tig0013377:+53548 | Msa1353430:CDS |
| TCTAACACAATGTGGCCAAC+AGG | 0.474624 | tig0013377:-48077 | None:intergenic |
| AAAGATATGCGTGCAGGTAA+AGG | 0.476022 | tig0013377:-55951 | None:intergenic |
| GACAGTGATAATGCCGTGAT+AGG | 0.477724 | tig0013377:-53732 | None:intergenic |
| AATATTCGAGTTTAAGGGAT+GGG | 0.480520 | tig0013377:+48581 | Msa1353430:CDS |
| AAGTCTCCACACATATGCTT+GGG | 0.483404 | tig0013377:-52586 | None:intergenic |
| TATGGAATCTGGAAAAGAAA+AGG | 0.484303 | tig0013377:+49249 | Msa1353430:CDS |
| CTTAAATCCAAATTGGATGT+TGG | 0.485333 | tig0013377:+53289 | Msa1353430:CDS |
| ATGATAAGTGTGGGATATCA+AGG | 0.485504 | tig0013377:+53109 | Msa1353430:CDS |
| TCAGGGAAACATCTTCTTGT+GGG | 0.486721 | tig0013377:+48025 | Msa1353430:CDS |
| TCTCCTGTGGAAGAGATAGA+TGG | 0.486932 | tig0013377:-54283 | None:intergenic |
| TTCAGTTCCATTGCTTTCTG+GGG | 0.487757 | tig0013377:+54664 | Msa1353430:CDS |
| ACCTTCAATCTGGAATTCAC+AGG | 0.487997 | tig0013377:+52999 | Msa1353430:CDS |
| GGAAGACACATTCTTTCTGC+TGG | 0.491112 | tig0013377:+50593 | Msa1353430:CDS |
| TGAAAATCCAACGCCTGTAA+AGG | 0.491515 | tig0013377:+52650 | Msa1353430:CDS |
| GGAACTGAAGGCAGGAAGAA+TGG | 0.492639 | tig0013377:-54650 | None:intergenic |
| CATCAAGGATCTGAAGCATT+CGG | 0.495114 | tig0013377:-55211 | None:intergenic |
| ATGCATCCGATGGCTCTGTA+TGG | 0.495730 | tig0013377:-46968 | None:intergenic |
| GCCTAAACTTCAAATTGTTG+AGG | 0.496454 | tig0013377:-55636 | None:intergenic |
| GTAATCTTCTTAGGAAGTTG+AGG | 0.497363 | tig0013377:-47109 | None:intergenic |
| TTATCTTGAGTTGGGAAAGC+CGG | 0.498897 | tig0013377:-54361 | None:intergenic |
| AATCATCTGCTACGGTAGCC+AGG | 0.502240 | tig0013377:-53521 | None:intergenic |
| TAATGTGGTTACCTGCCATA+TGG | 0.502599 | tig0013377:+52557 | Msa1353430:CDS |
| CTGTTGAATACAACATTGGT+GGG | 0.509492 | tig0013377:-55900 | None:intergenic |
| GATTTGTGCTTCAGTGAGGA+TGG | 0.509567 | tig0013377:+53618 | Msa1353430:CDS |
| GATGAGACAATACAGGAGAT+AGG | 0.509616 | tig0013377:-48609 | None:intergenic |
| AAAGGCGAAAGGCTCGATCC+TGG | 0.510767 | tig0013377:-50616 | None:intergenic |
| CAGCCCCTTCTGGCTTCTGG+AGG | 0.511831 | tig0013377:+49206 | Msa1353430:CDS |
| AATTCCATATCCAGAGTTGA+TGG | 0.514868 | tig0013377:-55188 | None:intergenic |
| AGGATTATCTCCATCAACTC+TGG | 0.515928 | tig0013377:+55178 | Msa1353430:CDS |
| ATTCTCAGTCTTGATGTTCA+GGG | 0.516449 | tig0013377:+48008 | Msa1353430:CDS |
| ATTTCTGTTGAATACAACAT+TGG | 0.518383 | tig0013377:-55904 | None:intergenic |
| GCATTCACTGATTATATCAA+AGG | 0.518837 | tig0013377:+55158 | Msa1353430:CDS |
| TAATCCACGAGTTGTTCAAT+CGG | 0.520785 | tig0013377:-55278 | None:intergenic |
| AGCAGGGGATGAGACAATAC+AGG | 0.520849 | tig0013377:-48616 | None:intergenic |
| AAGAACAATCTTGTTCCTGT+TGG | 0.524603 | tig0013377:+48062 | Msa1353430:CDS |
| ACTGCTTTATCTTTCAGCAC+TGG | 0.525692 | tig0013377:+48744 | Msa1353430:CDS |
| TACCCTTGGAATGTCGCCGC+CGG | 0.526663 | tig0013377:-46928 | None:intergenic |
| GCTTCAGTGAGGATGGGAAA+TGG | 0.527395 | tig0013377:+53625 | Msa1353430:CDS |
| TTAATAGGATCAACAAAGTA+GGG | 0.528258 | tig0013377:+50973 | Msa1353430:intron |
| CTTCTTTCGTCCAGTATGGA+TGG | 0.530251 | tig0013377:+53648 | Msa1353430:CDS |
| AGTATCTGGATGCATAATAC+AGG | 0.530387 | tig0013377:-48117 | None:intergenic |
| AAAATTGCCACAAGCACTGA+TGG | 0.530939 | tig0013377:-52936 | None:intergenic |
| ATATAGAGAAAACGGGATGA+TGG | 0.533892 | tig0013377:-54776 | None:intergenic |
| GCTCATCATTGTCGTCATCA+AGG | 0.534047 | tig0013377:-55226 | None:intergenic |
| AAAATAAAAGATATGCGTGC+AGG | 0.534150 | tig0013377:-55957 | None:intergenic |
| GTTCTTATTGGGAGTGAGCA+AGG | 0.535121 | tig0013377:+48522 | Msa1353430:CDS |
| AACAAACATTGAATATGTGA+CGG | 0.536149 | tig0013377:+55669 | Msa1353430:three_prime_UTR |
| ATGCTTGGGCAGTATCCATA+TGG | 0.536649 | tig0013377:-52572 | None:intergenic |
| TTCATATGCAAGTGGAAAAG+AGG | 0.537479 | tig0013377:+54243 | Msa1353430:CDS |
| TTCAGTGTTGAGTCGTTGAA+CGG | 0.537582 | tig0013377:-47011 | None:intergenic |
| CAACCTGTACAACAGAGAAA+AGG | 0.541536 | tig0013377:-50634 | None:intergenic |
| ACAAACATTGAATATGTGAC+GGG | 0.543072 | tig0013377:+55670 | Msa1353430:three_prime_UTR |
| TTCAGGGAAACATCTTCTTG+TGG | 0.544489 | tig0013377:+48024 | Msa1353430:CDS |
| GCTGATGAGCTCATTAGCAC+TGG | 0.544843 | tig0013377:-49338 | None:intergenic |
| TTAGGTTGAGAGGCATTCAC+CGG | 0.545733 | tig0013377:-54331 | None:intergenic |
| CCAGAAAGCAATGGAACTGA+AGG | 0.545837 | tig0013377:-54662 | None:intergenic |
| GATATACTCATCCTCATAGG+AGG | 0.547114 | tig0013377:+55845 | Msa1353430:three_prime_UTR |
| TGTTGTTGCTGTTGGCTGTA+CGG | 0.547922 | tig0013377:+48644 | Msa1353430:CDS |
| TTGCCATCTATCTCTTCCAC+AGG | 0.548149 | tig0013377:+54280 | Msa1353430:CDS |
| TCTGTTGAATACAACATTGG+TGG | 0.548150 | tig0013377:-55901 | None:intergenic |
| TGTTCAATCGGTATCAACTC+AGG | 0.549573 | tig0013377:-55266 | None:intergenic |
| CGGAGCATCTTTAGGTTGAG+AGG | 0.554260 | tig0013377:-54341 | None:intergenic |
| AAAGGTATCATTAGAGGAGA+AGG | 0.555301 | tig0013377:+54706 | Msa1353430:CDS |
| TAGATATTCAGTGCATGGTA+TGG | 0.556229 | tig0013377:+55533 | Msa1353430:CDS |
| GTATCATTAGAGGAGAAGGA+TGG | 0.557429 | tig0013377:+54710 | Msa1353430:CDS |
| AATTGATCAAGCTTTGCCAC+TGG | 0.558288 | tig0013377:-54426 | None:intergenic |
| ACAGCAACAACATCTAGAGC+AGG | 0.559119 | tig0013377:-48633 | None:intergenic |
| ACAATTGTCTGACTCTTCTG+AGG | 0.560074 | tig0013377:-54807 | None:intergenic |
| AGTTGAGCATTCTGGTGAGC+CGG | 0.560851 | tig0013377:+54312 | Msa1353430:CDS |
| TTCAGTGCATGGTATGGCAG+AGG | 0.561370 | tig0013377:+55539 | Msa1353430:CDS |
| ACCGGTGGCTATGCATCCGA+TGG | 0.562479 | tig0013377:-46978 | None:intergenic |
| ATCTGGATGCATAATACAGG+TGG | 0.563602 | tig0013377:-48114 | None:intergenic |
| ACTCCGCTCTTTGAAATCCC+AGG | 0.565415 | tig0013377:-53266 | None:intergenic |
| TTCGAACCATACAGAGCCAT+CGG | 0.567397 | tig0013377:+46962 | Msa1353430:CDS |
| CATTGCTTCCAAAGAGCCAG+TGG | 0.567511 | tig0013377:+54410 | Msa1353430:CDS |
| TGAACCTCCAGAAGCCAGAA+GGG | 0.567663 | tig0013377:-49210 | None:intergenic |
| CAAAACGTAACCTAGAACAC+CGG | 0.568411 | tig0013377:+46909 | Msa1353430:five_prime_UTR |
| CTTCGAAAGCGCAAAAGACG+AGG | 0.569001 | tig0013377:-49972 | None:intergenic |
| AATATTGTTTGAGCCTGGAA+AGG | 0.570569 | tig0013377:+54688 | Msa1353430:CDS |
| AATTGTTAAATCATCTGCTA+CGG | 0.570851 | tig0013377:-53529 | None:intergenic |
| CCACAATCAAACGCAATCAC+AGG | 0.571809 | tig0013377:-51957 | None:intergenic |
| CCTTCAATCTGGAATTCACA+GGG | 0.575398 | tig0013377:+53000 | Msa1353430:CDS |
| AAACTCAAAATTATTTCTGG+AGG | 0.575586 | tig0013377:-55318 | None:intergenic |
| ATTATCACTGTCCCCAAACA+TGG | 0.576857 | tig0013377:+53743 | Msa1353430:CDS |
| AAATACTCTCATGATAAGTG+TGG | 0.579404 | tig0013377:+53099 | Msa1353430:CDS |
| TTGGAGCAGTCATACTGCTA+AGG | 0.583210 | tig0013377:+47956 | Msa1353430:CDS |
| TCCATCAATACAAGTATAAG+CGG | 0.583978 | tig0013377:-55707 | None:intergenic |
| ATTTGTGCTTCAGTGAGGAT+GGG | 0.584407 | tig0013377:+53619 | Msa1353430:CDS |
| TTGGGCAGTATCCATATGGC+AGG | 0.587236 | tig0013377:-52568 | None:intergenic |
| TGGATGCATAATACAGGTGG+GGG | 0.589630 | tig0013377:-48111 | None:intergenic |
| ACTCTTAGATATTCAGTGCA+TGG | 0.590916 | tig0013377:+55528 | Msa1353430:CDS |
| AAAGCAATGGAACTGAAGGC+AGG | 0.594870 | tig0013377:-54658 | None:intergenic |
| ATGAACCTCCAGAAGCCAGA+AGG | 0.595407 | tig0013377:-49211 | None:intergenic |
| ACAAGTTGATGTGCCTATCA+CGG | 0.597708 | tig0013377:+53719 | Msa1353430:CDS |
| TGAGTCGTTGAACGGAGAAA+GGG | 0.598101 | tig0013377:-47003 | None:intergenic |
| GTTGCTGTTGGCTGTACGGA+CGG | 0.598579 | tig0013377:+48648 | Msa1353430:CDS |
| TCTGGATGCATAATACAGGT+GGG | 0.600284 | tig0013377:-48113 | None:intergenic |
| AATACTCTCATGATAAGTGT+GGG | 0.600441 | tig0013377:+53100 | Msa1353430:CDS |
| AATATTTCCCCAGAAAGCAA+TGG | 0.601261 | tig0013377:-54671 | None:intergenic |
| TGCTAATATATCCATGTTTG+GGG | 0.601394 | tig0013377:-53754 | None:intergenic |
| ACTTTCGTAACTGTTTCCGT+TGG | 0.603561 | tig0013377:+47034 | Msa1353430:CDS |
| ATCAAAATGGGGTATACCTG+TGG | 0.603694 | tig0013377:+53790 | Msa1353430:CDS |
| TAACCAATTCTTCATCGTAA+CGG | 0.604068 | tig0013377:-48692 | None:intergenic |
| ATATACTCATCCTCATAGGA+GGG | 0.604396 | tig0013377:+55846 | Msa1353430:three_prime_UTR |
| CCTGTGATTGCGTTTGATTG+TGG | 0.607870 | tig0013377:+51957 | Msa1353430:CDS |
| GTTGTAAGAGAGGCTCATGA+TGG | 0.612395 | tig0013377:+49281 | Msa1353430:CDS |
| CAGCAACAACATCTAGAGCA+GGG | 0.614150 | tig0013377:-48632 | None:intergenic |
| GCCATCGGATGCATAGCCAC+CGG | 0.614255 | tig0013377:+46977 | Msa1353430:CDS |
| AAATATTCGAGTTTAAGGGA+TGG | 0.616538 | tig0013377:+48580 | Msa1353430:CDS |
| TCAGATTACCATTATAACGA+TGG | 0.618308 | tig0013377:-53336 | None:intergenic |
| AATGTCGATTCATATGCAAG+TGG | 0.623688 | tig0013377:+54235 | Msa1353430:CDS |
| AGCAGTGACAGAACCACGCG+TGG | 0.627907 | tig0013377:-48727 | None:intergenic |
| GCTCCACTCAGTTGTAAGAG+AGG | 0.629434 | tig0013377:+49271 | Msa1353430:CDS |
| TACAACAGAGAAAAGGCGAA+AGG | 0.631634 | tig0013377:-50627 | None:intergenic |
| TTTCATGGAGAATCCAATGG+AGG | 0.634500 | tig0013377:+55794 | Msa1353430:three_prime_UTR |
| CTGGATGCATAATACAGGTG+GGG | 0.636974 | tig0013377:-48112 | None:intergenic |
| GATACCGATTGAACAACTCG+TGG | 0.642935 | tig0013377:+55274 | Msa1353430:CDS |
| TCAGTGCATGGTATGGCAGA+GGG | 0.645008 | tig0013377:+55540 | Msa1353430:CDS |
| AGAGCGTGATTGGTGTAATG+TGG | 0.645762 | tig0013377:+52542 | Msa1353430:CDS |
| AATTCTTACTTTATGCAGAG+CGG | 0.646649 | tig0013377:-50011 | None:intergenic |
| TTGTGCTCATGATAGTGAAG+TGG | 0.649129 | tig0013377:+53054 | Msa1353430:CDS |
| TCTTACTTTATGCAGAGCGG+AGG | 0.649231 | tig0013377:-50008 | None:intergenic |
| CTCAACTAGAGTATCTCCTG+TGG | 0.650067 | tig0013377:-54296 | None:intergenic |
| GAGCCTCTCTTACAACTGAG+TGG | 0.655771 | tig0013377:-49274 | None:intergenic |
| AACAGATTTGTGCTTCAGTG+AGG | 0.655929 | tig0013377:+53614 | Msa1353430:CDS |
| AGCAACAACATCTAGAGCAG+GGG | 0.656111 | tig0013377:-48631 | None:intergenic |
| AATTCTGATCTAACACAATG+TGG | 0.658285 | tig0013377:-48085 | None:intergenic |
| ACTTGTGCCATCAGTGCTTG+TGG | 0.658675 | tig0013377:+52929 | Msa1353430:CDS |
| TTCGAAAGCGCAAAAGACGA+GGG | 0.661264 | tig0013377:-49971 | None:intergenic |
| GCTCATGATAGTGAAGTGGT+TGG | 0.662823 | tig0013377:+53058 | Msa1353430:CDS |
| CACCGGCGGCGACATTCCAA+GGG | 0.664853 | tig0013377:+46926 | Msa1353430:five_prime_UTR |
| AATCTGAAAAGCTTTACCAA+CGG | 0.665502 | tig0013377:-47050 | None:intergenic |
| TACCCATGTTGATCAAAATG+GGG | 0.668020 | tig0013377:+53779 | Msa1353430:CDS |
| AGCGAAAGTGAAATCACGAT+AGG | 0.670102 | tig0013377:-47143 | None:intergenic |
| GAACCTCCAGAAGCCAGAAG+GGG | 0.671328 | tig0013377:-49209 | None:intergenic |
| GTTTCAAAGTACGAGGTGTG+TGG | 0.671775 | tig0013377:+55573 | Msa1353430:CDS |
| ATAAGTTGTTTCAAAGTACG+AGG | 0.697039 | tig0013377:+55566 | Msa1353430:CDS |
| AACGTAACCTAGAACACCGG+CGG | 0.697103 | tig0013377:+46912 | Msa1353430:five_prime_UTR |
| TTGAACGGAGAAAGGGACAC+CGG | 0.699488 | tig0013377:-46996 | None:intergenic |
| AGGCCTGGGATTTCAAAGAG+CGG | 0.706924 | tig0013377:+53263 | Msa1353430:intron |
| AACGGAGAAAGGGACACCGG+TGG | 0.717097 | tig0013377:-46993 | None:intergenic |
| ATACTGCCCAAGCATATGTG+TGG | 0.722172 | tig0013377:+52580 | Msa1353430:CDS |
| CTTCAATCTGGAATTCACAG+GGG | 0.778696 | tig0013377:+53001 | Msa1353430:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAATTTATTCAAAC+AGG | - | tig0013377:48202-48221 | None:intergenic | 10.0% |
| !!! | CTTTTTGTTTTATATAATTA+AGG | + | tig0013377:49777-49796 | Msa1353430:intron | 10.0% |
| !! | AAAAATCTTATAGATTAAAA+TGG | - | tig0013377:49807-49826 | None:intergenic | 10.0% |
| !!! | TTTTTAATTTGAAGAAAAAA+CGG | - | tig0013377:50401-50420 | None:intergenic | 10.0% |
| !!! | TTTACTTTTACTTTTTTATT+AGG | + | tig0013377:50812-50831 | Msa1353430:intron | 10.0% |
| !! | CATAATAATTTAATTGAATA+TGG | - | tig0013377:51780-51799 | None:intergenic | 10.0% |
| !! | CATATTCAATTAAATTATTA+TGG | + | tig0013377:51778-51797 | Msa1353430:intron | 10.0% |
| !! | TTGATTAAGATTTAATAATT+TGG | + | tig0013377:52197-52216 | Msa1353430:intron | 10.0% |
| !!! | TATTATTTTATTTTAACACA+AGG | - | tig0013377:53404-53423 | None:intergenic | 10.0% |
| !! | AAAATTTAATAAATGAAAAC+AGG | - | tig0013377:55777-55796 | None:intergenic | 10.0% |
| !!! | TTTCATTTATTAAATTTTCA+TGG | + | tig0013377:55779-55798 | Msa1353430:three_prime_UTR | 10.0% |
| !! | TTAAGTTTAAACAATACAAT+GGG | - | tig0013377:48462-48481 | None:intergenic | 15.0% |
| !!! | TTTAAGTTTAAACAATACAA+TGG | - | tig0013377:48463-48482 | None:intergenic | 15.0% |
| !!! | AAAAAAATATTCGAGTTTAA+GGG | + | tig0013377:48576-48595 | Msa1353430:CDS | 15.0% |
| !! | TACACAATTATTAACTAAAT+TGG | - | tig0013377:48867-48886 | None:intergenic | 15.0% |
| !!! | TTTATTTTATCTGATTTAGA+TGG | + | tig0013377:49182-49201 | Msa1353430:intron | 15.0% |
| !! | AAAAGGAAAAAAAATCAAAA+TGG | - | tig0013377:49729-49748 | None:intergenic | 15.0% |
| !!! | TTGATTTTTTTTCCTTTTAA+TGG | + | tig0013377:49731-49750 | Msa1353430:intron | 15.0% |
| !!! | TATAAAACAAAAAGTATCTA+AGG | - | tig0013377:49771-49790 | None:intergenic | 15.0% |
| !!! | GATTTTTAAATTTTCATTTG+TGG | + | tig0013377:49820-49839 | Msa1353430:intron | 15.0% |
| !! | AAGTAAAACATTACATAAAT+TGG | - | tig0013377:50799-50818 | None:intergenic | 15.0% |
| !! | AATATAGCCAAAATAAAATT+GGG | - | tig0013377:50855-50874 | None:intergenic | 15.0% |
| !! | AAATATAGCCAAAATAAAAT+TGG | - | tig0013377:50856-50875 | None:intergenic | 15.0% |
| !!! | ATTGAATTTGAAATGTTAAT+AGG | + | tig0013377:50958-50977 | Msa1353430:intron | 15.0% |
| !! | AAACAGGAAATAAAAAATAA+AGG | - | tig0013377:51114-51133 | None:intergenic | 15.0% |
| !!! | TTTTATTTCCTGTTTAAATT+TGG | + | tig0013377:51119-51138 | Msa1353430:intron | 15.0% |
| !! | ATAATTTAATTGAATATGGT+CGG | - | tig0013377:51776-51795 | None:intergenic | 15.0% |
| !!! | TTAATAATTTGGTACTATTT+TGG | + | tig0013377:52208-52227 | Msa1353430:intron | 15.0% |
| !!! | TGTTTATTTCATTTTTGTTA+TGG | - | tig0013377:52246-52265 | None:intergenic | 15.0% |
| !! | TAACAAAAATGAAATAAACA+AGG | + | tig0013377:52246-52265 | Msa1353430:intron | 15.0% |
| !! | TAAAAAAAAACTTAACAAAG+AGG | - | tig0013377:52685-52704 | None:intergenic | 15.0% |
| !!! | ACAGTTTTTTCATTATAAAA+TGG | - | tig0013377:52794-52813 | None:intergenic | 15.0% |
| !!! | TTTTATAATGAAAAAACTGT+TGG | + | tig0013377:52794-52813 | Msa1353430:intron | 15.0% |
| !! | AATAGAAAAAGAAGAAAATA+AGG | - | tig0013377:54517-54536 | None:intergenic | 15.0% |
| !!! | TATATGTTTTTACTCTAAAA+AGG | - | tig0013377:55030-55049 | None:intergenic | 15.0% |
| !!! | TATTCATTTTTAACCATTTT+TGG | + | tig0013377:55048-55067 | Msa1353430:intron | 15.0% |
| !! | AACATAATAAATATACAATC+AGG | - | tig0013377:55440-55459 | None:intergenic | 15.0% |
| !!! | TTATAGTTTTAGTGTATGTT+TGG | + | tig0013377:47268-47287 | Msa1353430:intron | 20.0% |
| !! | AAAGATTTATGGATAGATAT+TGG | + | tig0013377:48175-48194 | Msa1353430:intron | 20.0% |
| !! | AAGATTTATGGATAGATATT+GGG | + | tig0013377:48176-48195 | Msa1353430:intron | 20.0% |
| !!! | TTATTTTCAAAAGTACTACA+AGG | - | tig0013377:48341-48360 | None:intergenic | 20.0% |
| !!! | GAAAAAAATATTCGAGTTTA+AGG | + | tig0013377:48575-48594 | Msa1353430:CDS | 20.0% |
| !!! | TTTTTTTGACAAAAAATGTG+CGG | - | tig0013377:48805-48824 | None:intergenic | 20.0% |
| !!! | TTTTTCATGATAGAACATTA+TGG | - | tig0013377:49087-49106 | None:intergenic | 20.0% |
| !!! | TAAAGTAAGAATTATTTTCC+AGG | + | tig0013377:50021-50040 | Msa1353430:intron | 20.0% |
| !! | ACATAAAATACAACAGATAA+TGG | - | tig0013377:50122-50141 | None:intergenic | 20.0% |
| !!! | TATATGAACAGTTTTATTTG+AGG | + | tig0013377:50291-50310 | Msa1353430:intron | 20.0% |
| !! | TTTACAACCATCTTATAAAA+CGG | - | tig0013377:50497-50516 | None:intergenic | 20.0% |
| !!! | TAACACCTCATTTATTTTAA+CGG | + | tig0013377:50731-50750 | Msa1353430:intron | 20.0% |
| !! | AAACATTACATAAATTGGAA+TGG | - | tig0013377:50794-50813 | None:intergenic | 20.0% |
| !! | ATATAGCCAAAATAAAATTG+GGG | - | tig0013377:50854-50873 | None:intergenic | 20.0% |
| !!! | TTTATTTTGGCTATATTTCA+TGG | + | tig0013377:50858-50877 | Msa1353430:intron | 20.0% |
| !! | AAAATCTTCCAAATTTAAAC+AGG | - | tig0013377:51130-51149 | None:intergenic | 20.0% |
| !!! | TGTTTAAATTTGGAAGATTT+TGG | + | tig0013377:51129-51148 | Msa1353430:intron | 20.0% |
| !! | TTAATTGGTTAAAATTCACA+TGG | + | tig0013377:51264-51283 | Msa1353430:intron | 20.0% |
| !! | TAATTGGTTAAAATTCACAT+GGG | + | tig0013377:51265-51284 | Msa1353430:intron | 20.0% |
| !! | TTGTATGTTGTGTTAAAATT+TGG | + | tig0013377:51551-51570 | Msa1353430:intron | 20.0% |
| !!! | AGTTTGTAATTCTTGTTATT+AGG | + | tig0013377:51590-51609 | Msa1353430:intron | 20.0% |
| !! | TAATTTAATTGAATATGGTC+GGG | - | tig0013377:51775-51794 | None:intergenic | 20.0% |
| !! | GAAAACATAAGTAGATAATT+TGG | - | tig0013377:51891-51910 | None:intergenic | 20.0% |
| !! | TTAATAACCATACATAAGTT+TGG | - | tig0013377:52040-52059 | None:intergenic | 20.0% |
| !! | TAATTTATCAAAAGAATGTC+TGG | + | tig0013377:52098-52117 | Msa1353430:intron | 20.0% |
| !!! | ATATATTTGTTTTACCTTCT+AGG | + | tig0013377:52170-52189 | Msa1353430:intron | 20.0% |
| !!! | CAAGTTTTCTTGATAATATT+TGG | - | tig0013377:52378-52397 | None:intergenic | 20.0% |
| !!! | CTTGAAGTATTTAGAATAAT+TGG | + | tig0013377:52454-52473 | Msa1353430:intron | 20.0% |
| !!! | TGCTTTTTATTTGATGTAAA+CGG | - | tig0013377:53182-53201 | None:intergenic | 20.0% |
| !!! | CAATGTCATTTAAATTACAA+AGG | - | tig0013377:54100-54119 | None:intergenic | 20.0% |
| !! | GTAATTTAAATGACATTGAT+TGG | + | tig0013377:54102-54121 | Msa1353430:intron | 20.0% |
| !!! | TTATATTGAGAAATTTTTCC+AGG | + | tig0013377:54182-54201 | Msa1353430:intron | 20.0% |
| !!! | TATATTGAGAAATTTTTCCA+GGG | + | tig0013377:54183-54202 | Msa1353430:intron | 20.0% |
| !! | GATCAATTTAGACATTATAA+AGG | + | tig0013377:54441-54460 | Msa1353430:CDS | 20.0% |
| !! | ATTGAAGAATATAGAGAAAA+CGG | - | tig0013377:54787-54806 | None:intergenic | 20.0% |
| !! | TAGAAACTCAAAATTATTTC+TGG | - | tig0013377:55324-55343 | None:intergenic | 20.0% |
| !!! | GTTTTAGTTATAGATGAAAA+AGG | + | tig0013377:56020-56039 | Msa1353430:three_prime_UTR | 20.0% |
| !!! | TTCTAGAATCAATGTATGTT+TGG | + | tig0013377:47389-47408 | Msa1353430:intron | 25.0% |
| !!! | TATGGCTAAAATTAAGTTGA+AGG | + | tig0013377:47433-47452 | Msa1353430:intron | 25.0% |
| !! | TCATGTAGAATCAATTTTGT+AGG | + | tig0013377:47561-47580 | Msa1353430:intron | 25.0% |
| ! | AAGGTAAAGTAATTCATGTT+TGG | + | tig0013377:47742-47761 | Msa1353430:intron | 25.0% |
| !! | GATTGATTCTACTTAAAACT+GGG | - | tig0013377:47841-47860 | None:intergenic | 25.0% |
| !!! | AATTTGCTACATTTTCTTTC+AGG | + | tig0013377:47926-47945 | Msa1353430:intron | 25.0% |
| ! | TAAACACAGTTCATTTGAAT+CGG | - | tig0013377:48909-48928 | None:intergenic | 25.0% |
| !! | ACTGTGTTTATGTTTTCTAT+TGG | + | tig0013377:48919-48938 | Msa1353430:intron | 25.0% |
| ! | TTTGCATATTAGAAAGAAGA+AGG | - | tig0013377:49498-49517 | None:intergenic | 25.0% |
| ! | TTGAAGATAACTAGTAAGTA+TGG | + | tig0013377:49542-49561 | Msa1353430:intron | 25.0% |
| !!! | AGAACGTTTTTTTCCTTTAA+GGG | + | tig0013377:49597-49616 | Msa1353430:intron | 25.0% |
| !! | TTTTTACTGTTCTACGAAAA+TGG | - | tig0013377:49628-49647 | None:intergenic | 25.0% |
| !!! | AAAACAAAAAGTATCTAAGG+TGG | - | tig0013377:49768-49787 | None:intergenic | 25.0% |
| ! | ACTGCCTGAATATTAAAAAA+CGG | + | tig0013377:49902-49921 | Msa1353430:intron | 25.0% |
| !!! | ATAGCCGTTTTTTAATATTC+AGG | - | tig0013377:49909-49928 | None:intergenic | 25.0% |
| ! | AAAAAACGGTTATAAAAGGA+GGG | - | tig0013377:50387-50406 | None:intergenic | 25.0% |
| ! | GAAGAAAAAACGGTTATAAA+AGG | - | tig0013377:50391-50410 | None:intergenic | 25.0% |
| !! | TCTAAATCTAAGACTAACTT+TGG | + | tig0013377:50684-50703 | Msa1353430:intron | 25.0% |
| !! | AAGACTAACTTTGGTTTATT+TGG | + | tig0013377:50693-50712 | Msa1353430:intron | 25.0% |
| ! | ATAGACCGTTAAAATAAATG+AGG | - | tig0013377:50739-50758 | None:intergenic | 25.0% |
| ! | TATAGCCAAAATAAAATTGG+GGG | - | tig0013377:50853-50872 | None:intergenic | 25.0% |
| ! | TTAATAGGATCAACAAAGTA+GGG | + | tig0013377:50973-50992 | Msa1353430:intron | 25.0% |
| ! | AATGCAATCAAAGATCAATT+AGG | - | tig0013377:51088-51107 | None:intergenic | 25.0% |
| ! | GTATTGTATTCAATGAACAA+CGG | + | tig0013377:51363-51382 | Msa1353430:intron | 25.0% |
| ! | TATTGTATTCAATGAACAAC+GGG | + | tig0013377:51364-51383 | Msa1353430:intron | 25.0% |
| !!! | ATGCAAATTCATTTGATTTG+TGG | + | tig0013377:51491-51510 | Msa1353430:intron | 25.0% |
| ! | TTATCTAGCACATTTATTCA+TGG | + | tig0013377:51525-51544 | Msa1353430:intron | 25.0% |
| ! | TCAGTATAACATTAAGTCAT+CGG | - | tig0013377:52064-52083 | None:intergenic | 25.0% |
| !!! | ATTTGGTACTATTTTGGATA+AGG | + | tig0013377:52214-52233 | Msa1353430:intron | 25.0% |
| !! | TCTTGATAATATTTGGTGAT+TGG | - | tig0013377:52371-52390 | None:intergenic | 25.0% |
| !! | AGACTTCAAAATTTTGTTCT+TGG | + | tig0013377:52603-52622 | Msa1353430:CDS | 25.0% |
| !! | ATATGCTTCTTTTCTCTATT+AGG | + | tig0013377:52839-52858 | Msa1353430:intron | 25.0% |
| !! | TATGCTTCTTTTCTCTATTA+GGG | + | tig0013377:52840-52859 | Msa1353430:intron | 25.0% |
| !!! | TTTATATGCATTTTGAGTGT+TGG | + | tig0013377:52872-52891 | Msa1353430:intron | 25.0% |
| !!! | GGTTCATATTTTTTGTTTGA+AGG | + | tig0013377:53141-53160 | Msa1353430:intron | 25.0% |
| !!! | GCTTTTTATTTGATGTAAAC+GGG | - | tig0013377:53181-53200 | None:intergenic | 25.0% |
| ! | ATAAAAAGCAATCAAAACAC+TGG | + | tig0013377:53192-53211 | Msa1353430:intron | 25.0% |
| ! | TTAGCATTGCTAATTATACT+AGG | + | tig0013377:53215-53234 | Msa1353430:intron | 25.0% |
| ! | ATTGTTTACCATCGTTATAA+TGG | + | tig0013377:53328-53347 | Msa1353430:CDS | 25.0% |
| ! | GAAGGTTTATAATGAATTTC+AGG | + | tig0013377:53495-53514 | Msa1353430:intron | 25.0% |
| ! | AATTGTTAAATCATCTGCTA+CGG | - | tig0013377:53532-53551 | None:intergenic | 25.0% |
| ! | AATTAGATTGTTTGATGTTG+TGG | + | tig0013377:53548-53567 | Msa1353430:CDS | 25.0% |
| ! | TTGCTAATATATCCATGTTT+GGG | - | tig0013377:53758-53777 | None:intergenic | 25.0% |
| ! | ATGAACAGAGAAAACAAATT+TGG | - | tig0013377:53823-53842 | None:intergenic | 25.0% |
| !! | GTCTGTTATGTATACTTTTA+TGG | + | tig0013377:53893-53912 | Msa1353430:intron | 25.0% |
| !! | ATGTATACTTTTATGGTCTT+TGG | + | tig0013377:53900-53919 | Msa1353430:intron | 25.0% |
| !! | AATGAAAGTGTAACTAAATC+AGG | - | tig0013377:54394-54413 | None:intergenic | 25.0% |
| ! | TTGAAGAATATAGAGAAAAC+GGG | - | tig0013377:54786-54805 | None:intergenic | 25.0% |
| !! | AAATTACAGTCGATTAGTTA+TGG | + | tig0013377:54869-54888 | Msa1353430:intron | 25.0% |
| ! | GAATAAATCCTAAGTGTATT+TGG | - | tig0013377:55085-55104 | None:intergenic | 25.0% |
| !! | TTCTGAAAACATGTATTGTT+AGG | + | tig0013377:55109-55128 | Msa1353430:intron | 25.0% |
| !!! | AAACTCAAAATTATTTCTGG+AGG | - | tig0013377:55321-55340 | None:intergenic | 25.0% |
| ! | AACAAACATTGAATATGTGA+CGG | + | tig0013377:55669-55688 | Msa1353430:three_prime_UTR | 25.0% |
| ! | ATTTCTGTTGAATACAACAT+TGG | - | tig0013377:55907-55926 | None:intergenic | 25.0% |
| ! | GATATTCTTGAAGACAAAAT+TGG | + | tig0013377:55985-56004 | Msa1353430:three_prime_UTR | 25.0% |
| AATCTGAAAAGCTTTACCAA+CGG | - | tig0013377:47053-47072 | None:intergenic | 30.0% | |
| !!! | TCAATGTATGTTTGGTTTTG+CGG | + | tig0013377:47397-47416 | Msa1353430:intron | 30.0% |
| GTGTCAAAATCAATTCTAGA+AGG | + | tig0013377:47512-47531 | Msa1353430:intron | 30.0% | |
| !! | AGAAGTGATTCTGAAATGTT+TGG | - | tig0013377:47612-47631 | None:intergenic | 30.0% |
| ! | TTTGACTAAAAGTGAGTTGA+AGG | + | tig0013377:47723-47742 | Msa1353430:intron | 30.0% |
| ! | GGATTGATTCTACTTAAAAC+TGG | - | tig0013377:47842-47861 | None:intergenic | 30.0% |
| !! | GTTTTAAGTAGAATCAATCC+TGG | + | tig0013377:47842-47861 | Msa1353430:intron | 30.0% |
| GCAAAATCAATTCTGCAAAT+TGG | + | tig0013377:47867-47886 | Msa1353430:intron | 30.0% | |
| ! | GTGAAATCGTTATTGTTGTT+TGG | + | tig0013377:47978-47997 | Msa1353430:CDS | 30.0% |
| AATTCTGATCTAACACAATG+TGG | - | tig0013377:48088-48107 | None:intergenic | 30.0% | |
| TCCAGATACTTACCTTAATA+AGG | + | tig0013377:48130-48149 | Msa1353430:CDS | 30.0% | |
| ACCTTATTAAGGTAAGTATC+TGG | - | tig0013377:48134-48153 | None:intergenic | 30.0% | |
| CAAAACTTATACCAGTAGAT+AGG | + | tig0013377:48412-48431 | Msa1353430:intron | 30.0% | |
| ACTTATTTGAACCTATCTAC+TGG | - | tig0013377:48426-48445 | None:intergenic | 30.0% | |
| TGCTTATCAATCATAAACCA+CGG | - | tig0013377:48493-48512 | None:intergenic | 30.0% | |
| TGATTGATAAGCATGTAAAC+AGG | + | tig0013377:48500-48519 | Msa1353430:intron | 30.0% | |
| CATGTAAACAGGTTCTTATT+GGG | + | tig0013377:48511-48530 | Msa1353430:intron | 30.0% | |
| ! | AAATATTCGAGTTTAAGGGA+TGG | + | tig0013377:48580-48599 | Msa1353430:CDS | 30.0% |
| ! | AATATTCGAGTTTAAGGGAT+GGG | + | tig0013377:48581-48600 | Msa1353430:CDS | 30.0% |
| TAACCAATTCTTCATCGTAA+CGG | - | tig0013377:48695-48714 | None:intergenic | 30.0% | |
| ! | GTGTTTATGTTTTCTATTGG+AGG | + | tig0013377:48922-48941 | Msa1353430:intron | 30.0% |
| ! | AATAAATTCAAGAGTGTGAC+TGG | - | tig0013377:48962-48981 | None:intergenic | 30.0% |
| ! | AGCTTTTCTGTGGTATTTAT+TGG | + | tig0013377:49155-49174 | Msa1353430:intron | 30.0% |
| TGTTATTAGCATATGGAATC+TGG | + | tig0013377:49238-49257 | Msa1353430:CDS | 30.0% | |
| TATGGAATCTGGAAAAGAAA+AGG | + | tig0013377:49249-49268 | Msa1353430:CDS | 30.0% | |
| ! | AAACCGACGATAATATTTTC+TGG | + | tig0013377:49450-49469 | Msa1353430:intron | 30.0% |
| ! | AACCGACGATAATATTTTCT+GGG | + | tig0013377:49451-49470 | Msa1353430:intron | 30.0% |
| !!! | CAGAACGTTTTTTTCCTTTA+AGG | + | tig0013377:49596-49615 | Msa1353430:intron | 30.0% |
| TGAGTATCAGTAAAGAGTAA+AGG | - | tig0013377:49692-49711 | None:intergenic | 30.0% | |
| GAACATTTCACTCCATTAAA+AGG | - | tig0013377:49746-49765 | None:intergenic | 30.0% | |
| !! | CTATTTGTTTTTCTCAGATG+TGG | + | tig0013377:49925-49944 | Msa1353430:intron | 30.0% |
| AATTCTTACTTTATGCAGAG+CGG | - | tig0013377:50014-50033 | None:intergenic | 30.0% | |
| TTTCCAGGTCTTAGTTTATT+AGG | + | tig0013377:50036-50055 | Msa1353430:intron | 30.0% | |
| !! | AATACAACAGATAATGGAGT+AGG | - | tig0013377:50116-50135 | None:intergenic | 30.0% |
| TAGTGAGAAAAAACTTGCAT+CGG | - | tig0013377:50165-50184 | None:intergenic | 30.0% | |
| TTGAAACAATATCACTTTCG+TGG | + | tig0013377:50192-50211 | Msa1353430:intron | 30.0% | |
| TCATATGCTGAAAATCATAG+AGG | - | tig0013377:50218-50237 | None:intergenic | 30.0% | |
| GTAGTTAATCCTTCACAAAA+AGG | - | tig0013377:50354-50373 | None:intergenic | 30.0% | |
| GAAAAAACGGTTATAAAAGG+AGG | - | tig0013377:50388-50407 | None:intergenic | 30.0% | |
| ATAGCCAAAATAAAATTGGG+GGG | - | tig0013377:50852-50871 | None:intergenic | 30.0% | |
| AGGAAAGATAGAGTAGAAAA+TGG | - | tig0013377:50916-50935 | None:intergenic | 30.0% | |
| GTTAATAGGATCAACAAAGT+AGG | + | tig0013377:50972-50991 | Msa1353430:intron | 30.0% | |
| TTCAACACACTCTCTTTAAT+TGG | + | tig0013377:51249-51268 | Msa1353430:intron | 30.0% | |
| !! | CTTCAAAAGTTTGTTAACGA+AGG | - | tig0013377:51435-51454 | None:intergenic | 30.0% |
| TTGACATCAAAAGCAAAAGA+AGG | - | tig0013377:51629-51648 | None:intergenic | 30.0% | |
| !! | TTTTGCTTTTGATGTCAACA+CGG | + | tig0013377:51631-51650 | Msa1353430:intron | 30.0% |
| !! | GCTGCTGATATTTATTTTCA+TGG | - | tig0013377:51732-51751 | None:intergenic | 30.0% |
| ATTGTGGTAAGTTCTTTCTA+TGG | + | tig0013377:51973-51992 | Msa1353430:intron | 30.0% | |
| GTGTAATTGTATTGTAGTTG+TGG | + | tig0013377:52011-52030 | Msa1353430:intron | 30.0% | |
| TCTTAATCAAACTACCTAGA+AGG | - | tig0013377:52187-52206 | None:intergenic | 30.0% | |
| TCTATTTGACGTAAATCACA+TGG | - | tig0013377:52346-52365 | None:intergenic | 30.0% | |
| !!! | AATGCTCTGCTTATTTTAGT+AGG | + | tig0013377:52744-52763 | Msa1353430:intron | 30.0% |
| AAATACTCTCATGATAAGTG+TGG | + | tig0013377:53099-53118 | Msa1353430:CDS | 30.0% | |
| AATACTCTCATGATAAGTGT+GGG | + | tig0013377:53100-53119 | Msa1353430:CDS | 30.0% | |
| ! | ATACTAGGAATCCTTGTTTA+TGG | + | tig0013377:53230-53249 | Msa1353430:intron | 30.0% |
| ! | TACTAGGAATCCTTGTTTAT+GGG | + | tig0013377:53231-53250 | Msa1353430:intron | 30.0% |
| CTTAAATCCAAATTGGATGT+TGG | + | tig0013377:53289-53308 | Msa1353430:CDS | 30.0% | |
| TCAGATTACCATTATAACGA+TGG | - | tig0013377:53339-53358 | None:intergenic | 30.0% | |
| AACACAAGGAATTAGTAACA+TGG | - | tig0013377:53390-53409 | None:intergenic | 30.0% | |
| TAAACCTTCAATCAACTTCA+TGG | - | tig0013377:53484-53503 | None:intergenic | 30.0% | |
| ! | AGACTTGTTCGTAAATTTGA+AGG | + | tig0013377:53576-53595 | Msa1353430:CDS | 30.0% |
| TGCTAATATATCCATGTTTG+GGG | - | tig0013377:53757-53776 | None:intergenic | 30.0% | |
| GTTGCTAATATATCCATGTT+TGG | - | tig0013377:53759-53778 | None:intergenic | 30.0% | |
| CAACAAACACTTGGAAAAAT+GGG | - | tig0013377:53872-53891 | None:intergenic | 30.0% | |
| ACAACAAACACTTGGAAAAA+TGG | - | tig0013377:53873-53892 | None:intergenic | 30.0% | |
| AATGAATTTCACCTACAAGA+AGG | - | tig0013377:53957-53976 | None:intergenic | 30.0% | |
| !! | TTTCTAGAATGAAGTTACTG+AGG | + | tig0013377:53976-53995 | Msa1353430:intron | 30.0% |
| AAGTTGCTAACAATCTTGAA+TGG | + | tig0013377:54063-54082 | Msa1353430:intron | 30.0% | |
| AGTTGCTAACAATCTTGAAT+GGG | + | tig0013377:54064-54083 | Msa1353430:intron | 30.0% | |
| ! | AATGACATTGATTGGATCTA+TGG | + | tig0013377:54110-54129 | Msa1353430:intron | 30.0% |
| GTATTTGCTTATCTTGAGTT+GGG | - | tig0013377:54372-54391 | None:intergenic | 30.0% | |
| TCAATCAAACATCATCTTGA+AGG | - | tig0013377:54917-54936 | None:intergenic | 30.0% | |
| AAAAAATCACGTATAAACCG+AGG | - | tig0013377:54962-54981 | None:intergenic | 30.0% | |
| !!! | TACGTGATTTTTTTTTCCAC+CGG | + | tig0013377:54969-54988 | Msa1353430:intron | 30.0% |
| ! | GCATTCACTGATTATATCAA+AGG | + | tig0013377:55158-55177 | Msa1353430:CDS | 30.0% |
| !!! | TGTCATCAGACTATTTTTGA+AGG | + | tig0013377:55349-55368 | Msa1353430:CDS | 30.0% |
| ! | ATAAGTTGTTTCAAAGTACG+AGG | + | tig0013377:55566-55585 | Msa1353430:CDS | 30.0% |
| ! | TCCTCAACAATTTGAAGTTT+AGG | + | tig0013377:55635-55654 | Msa1353430:three_prime_UTR | 30.0% |
| ACAAACATTGAATATGTGAC+GGG | + | tig0013377:55670-55689 | Msa1353430:three_prime_UTR | 30.0% | |
| TCCATCAATACAAGTATAAG+CGG | - | tig0013377:55710-55729 | None:intergenic | 30.0% | |
| ! | GAAATCAGGTTAAAAGCTTT+TGG | + | tig0013377:55742-55761 | Msa1353430:three_prime_UTR | 30.0% |
| ! | AATTTTCATGGAGAATCCAA+TGG | + | tig0013377:55791-55810 | Msa1353430:three_prime_UTR | 30.0% |
| ! | CAATGGAGGAATTTTTGTAA+CGG | + | tig0013377:55808-55827 | Msa1353430:three_prime_UTR | 30.0% |
| ! | AATGGAGGAATTTTTGTAAC+GGG | + | tig0013377:55809-55828 | Msa1353430:three_prime_UTR | 30.0% |
| TATGATATACTCATCCTCAT+AGG | + | tig0013377:55842-55861 | Msa1353430:three_prime_UTR | 30.0% | |
| AAAATAAAAGATATGCGTGC+AGG | - | tig0013377:55960-55979 | None:intergenic | 30.0% | |
| ! | GAAAATACCCATTTTACCCT+TGG | - | tig0013377:46945-46964 | None:intergenic | 35.0% |
| GTAATCTTCTTAGGAAGTTG+AGG | - | tig0013377:47112-47131 | None:intergenic | 35.0% | |
| GCAAGAGAAGTAATCTTCTT+AGG | - | tig0013377:47121-47140 | None:intergenic | 35.0% | |
| !! | TGTTTTTAAACGTGCTCATC+AGG | + | tig0013377:47186-47205 | Msa1353430:CDS | 35.0% |
| TGCGGTGAGAAAATTGATTA+TGG | + | tig0013377:47415-47434 | Msa1353430:intron | 35.0% | |
| TACATGAAGCTAGAAATTGC+AGG | - | tig0013377:47548-47567 | None:intergenic | 35.0% | |
| !!! | TTTTCTTTCAGGTTGCAACT+TGG | + | tig0013377:47937-47956 | Msa1353430:intron | 35.0% |
| TATTCTCAGTCTTGATGTTC+AGG | + | tig0013377:48007-48026 | Msa1353430:CDS | 35.0% | |
| ATTCTCAGTCTTGATGTTCA+GGG | + | tig0013377:48008-48027 | Msa1353430:CDS | 35.0% | |
| AAGAACAATCTTGTTCCTGT+TGG | + | tig0013377:48062-48081 | Msa1353430:CDS | 35.0% | |
| AGTATCTGGATGCATAATAC+AGG | - | tig0013377:48120-48139 | None:intergenic | 35.0% | |
| AAGATGTGCTCACCTTATTA+AGG | - | tig0013377:48145-48164 | None:intergenic | 35.0% | |
| TTCTCTGCGTCAAAGATTTA+TGG | + | tig0013377:48164-48183 | Msa1353430:intron | 35.0% | |
| !! | TAAGTTTTGTGAGGCTGTTT+GGG | - | tig0013377:48401-48420 | None:intergenic | 35.0% |
| !! | ATAAGTTTTGTGAGGCTGTT+TGG | - | tig0013377:48402-48421 | None:intergenic | 35.0% |
| !! | CTACTGGTATAAGTTTTGTG+AGG | - | tig0013377:48410-48429 | None:intergenic | 35.0% |
| ! | AACAATACAATGGGCTTGTT+TGG | - | tig0013377:48453-48472 | None:intergenic | 35.0% |
| TAAACTTAAATCGAAGACCG+TGG | + | tig0013377:48473-48492 | Msa1353430:intron | 35.0% | |
| GCATGTAAACAGGTTCTTAT+TGG | + | tig0013377:48510-48529 | Msa1353430:intron | 35.0% | |
| ATTATCAACCTCGTGGTTAA+TGG | - | tig0013377:48992-49011 | None:intergenic | 35.0% | |
| AGTGAAAATTATCAACCTCG+TGG | - | tig0013377:48999-49018 | None:intergenic | 35.0% | |
| !! | TGTTGACTTCTACCAATAAG+TGG | + | tig0013377:49036-49055 | Msa1353430:intron | 35.0% |
| ! | GTTGACTTCTACCAATAAGT+GGG | + | tig0013377:49037-49056 | Msa1353430:intron | 35.0% |
| TTGACTTCTACCAATAAGTG+GGG | + | tig0013377:49038-49057 | Msa1353430:intron | 35.0% | |
| ! | TTTCTCTTTGAGCTTTTCTG+TGG | + | tig0013377:49145-49164 | Msa1353430:intron | 35.0% |
| !! | CATCTGGTGTTATTAGCATA+TGG | + | tig0013377:49231-49250 | Msa1353430:CDS | 35.0% |
| CAAGAAATTGAAGTTCATGC+AGG | - | tig0013377:49420-49439 | None:intergenic | 35.0% | |
| CACCCAGAAAATATTATCGT+CGG | - | tig0013377:49456-49475 | None:intergenic | 35.0% | |
| AACGTTCTGTTGCTAGTAAT+CGG | - | tig0013377:49585-49604 | None:intergenic | 35.0% | |
| ! | TTGTGGTGTCTGATTTTGTT+TGG | + | tig0013377:49837-49856 | Msa1353430:intron | 35.0% |
| ! | TGGATTTTTGACACAAGTGA+TGG | + | tig0013377:49945-49964 | Msa1353430:CDS | 35.0% |
| TCTCCTAATAAACTAAGACC+TGG | - | tig0013377:50042-50061 | None:intergenic | 35.0% | |
| ! | TTTTCTCGACCTTTTTGTGA+AGG | + | tig0013377:50342-50361 | Msa1353430:intron | 35.0% |
| !!! | GAGCTGTTCAGCTTATTTTT+TGG | + | tig0013377:50463-50482 | Msa1353430:intron | 35.0% |
| !! | TGTGACAGGTTTTATGCTAA+TGG | + | tig0013377:50572-50591 | Msa1353430:intron | 35.0% |
| GAAGCAACATTAGAGTAGTT+AGG | - | tig0013377:50765-50784 | None:intergenic | 35.0% | |
| !! | CTTTCCCCCCAATTTTATTT+TGG | + | tig0013377:50845-50864 | Msa1353430:intron | 35.0% |
| ! | TTTTAGCGCGTTTAGAAACA+TGG | - | tig0013377:51012-51031 | None:intergenic | 35.0% |
| GCTGAGAGTTAAGGTAATAT+CGG | + | tig0013377:51033-51052 | Msa1353430:intron | 35.0% | |
| GAAACAGATAATACTCTGCA+GGG | - | tig0013377:51192-51211 | None:intergenic | 35.0% | |
| TGAAACAGATAATACTCTGC+AGG | - | tig0013377:51193-51212 | None:intergenic | 35.0% | |
| TGGGACCCATCAAATTTATA+TGG | + | tig0013377:51284-51303 | Msa1353430:intron | 35.0% | |
| GGGACCCATCAAATTTATAT+GGG | + | tig0013377:51285-51304 | Msa1353430:intron | 35.0% | |
| GGGTCCCATATAAATTTGAT+GGG | - | tig0013377:51292-51311 | None:intergenic | 35.0% | |
| TGGGTCCCATATAAATTTGA+TGG | - | tig0013377:51293-51312 | None:intergenic | 35.0% | |
| CTTGATCAAAACACATCTGT+GGG | + | tig0013377:51329-51348 | Msa1353430:intron | 35.0% | |
| ! | TTTTGATGTCAACACGGATA+AGG | + | tig0013377:51637-51656 | Msa1353430:intron | 35.0% |
| GTATATGTGCGTGTTTGTAT+AGG | + | tig0013377:51914-51933 | Msa1353430:intron | 35.0% | |
| TCAAAAGAATGTCTGGTAGT+TGG | + | tig0013377:52105-52124 | Msa1353430:intron | 35.0% | |
| GAGGTTTCCTTAACAATATG+CGG | - | tig0013377:52313-52332 | None:intergenic | 35.0% | |
| ATCACATGGTCGTTTAAAAG+AGG | - | tig0013377:52332-52351 | None:intergenic | 35.0% | |
| CATTTCACACATATCTTCTG+TGG | - | tig0013377:52728-52747 | None:intergenic | 35.0% | |
| TGAAAAAACTGTTGGATGTG+TGG | + | tig0013377:52802-52821 | Msa1353430:intron | 35.0% | |
| !!! | TGTGGCAATTTTGCCATTTT+AGG | + | tig0013377:52947-52966 | Msa1353430:CDS | 35.0% |
| !!! | GTGGCAATTTTGCCATTTTA+GGG | + | tig0013377:52948-52967 | Msa1353430:CDS | 35.0% |
| GAAAAGTTCAACCTTCAATC+TGG | + | tig0013377:52989-53008 | Msa1353430:CDS | 35.0% | |
| ATGATAAGTGTGGGATATCA+AGG | + | tig0013377:53109-53128 | Msa1353430:CDS | 35.0% | |
| GGGATATCAAGGAGATATAA+AGG | + | tig0013377:53120-53139 | Msa1353430:CDS | 35.0% | |
| TGCAATGAAACCCATAAACA+AGG | - | tig0013377:53244-53263 | None:intergenic | 35.0% | |
| TTGTTTATGGGTTTCATTGC+AGG | + | tig0013377:53243-53262 | Msa1353430:intron | 35.0% | |
| AGAACAACCAACATCCAATT+TGG | - | tig0013377:53299-53318 | None:intergenic | 35.0% | |
| ! | ATAATGAATTTCAGGTCTCC+TGG | + | tig0013377:53503-53522 | Msa1353430:intron | 35.0% |
| TGGATGGAAGTCTTAGAATT+TGG | + | tig0013377:53664-53683 | Msa1353430:CDS | 35.0% | |
| GGATGGAAGTCTTAGAATTT+GGG | + | tig0013377:53665-53684 | Msa1353430:CDS | 35.0% | |
| ACTACCCATGTTGATCAAAA+TGG | + | tig0013377:53777-53796 | Msa1353430:CDS | 35.0% | |
| CTACCCATGTTGATCAAAAT+GGG | + | tig0013377:53778-53797 | Msa1353430:CDS | 35.0% | |
| TACCCATGTTGATCAAAATG+GGG | + | tig0013377:53779-53798 | Msa1353430:CDS | 35.0% | |
| !! | TACCCCATTTTGATCAACAT+GGG | - | tig0013377:53784-53803 | None:intergenic | 35.0% |
| !! | ATACCCCATTTTGATCAACA+TGG | - | tig0013377:53785-53804 | None:intergenic | 35.0% |
| CAAATTTGGAAACTTACCAC+AGG | - | tig0013377:53809-53828 | None:intergenic | 35.0% | |
| TAACAGACACAACAAACACT+TGG | - | tig0013377:53881-53900 | None:intergenic | 35.0% | |
| AATCAGTTTCCTCATCTTAC+AGG | - | tig0013377:53934-53953 | None:intergenic | 35.0% | |
| CTTGCATATGAATCGACATT+TGG | - | tig0013377:54235-54254 | None:intergenic | 35.0% | |
| !! | AATGTCGATTCATATGCAAG+TGG | + | tig0013377:54235-54254 | Msa1353430:CDS | 35.0% |
| TTCATATGCAAGTGGAAAAG+AGG | + | tig0013377:54243-54262 | Msa1353430:CDS | 35.0% | |
| GGTATTTGCTTATCTTGAGT+TGG | - | tig0013377:54373-54392 | None:intergenic | 35.0% | |
| CAGAAGTTCATAGAATGAGA+AGG | - | tig0013377:54488-54507 | None:intergenic | 35.0% | |
| AATGTTGAATTCTGAACTCC+AGG | + | tig0013377:54583-54602 | Msa1353430:intron | 35.0% | |
| AATATTTCCCCAGAAAGCAA+TGG | - | tig0013377:54674-54693 | None:intergenic | 35.0% | |
| AATATTGTTTGAGCCTGGAA+AGG | + | tig0013377:54688-54707 | Msa1353430:CDS | 35.0% | |
| !! | AAAGGTATCATTAGAGGAGA+AGG | + | tig0013377:54706-54725 | Msa1353430:CDS | 35.0% |
| ATATAGAGAAAACGGGATGA+TGG | - | tig0013377:54779-54798 | None:intergenic | 35.0% | |
| CAAGTGCATATTTATCGAAC+CGG | - | tig0013377:54991-55010 | None:intergenic | 35.0% | |
| AATTCCATATCCAGAGTTGA+TGG | - | tig0013377:55191-55210 | None:intergenic | 35.0% | |
| TAATCCACGAGTTGTTCAAT+CGG | - | tig0013377:55281-55300 | None:intergenic | 35.0% | |
| AGATACATGGCGATACAATT+CGG | + | tig0013377:55473-55492 | Msa1353430:intron | 35.0% | |
| CACACTTACAAGAAAAAGCA+AGG | + | tig0013377:55503-55522 | Msa1353430:CDS | 35.0% | |
| ACTCTTAGATATTCAGTGCA+TGG | + | tig0013377:55528-55547 | Msa1353430:CDS | 35.0% | |
| TAGATATTCAGTGCATGGTA+TGG | + | tig0013377:55533-55552 | Msa1353430:CDS | 35.0% | |
| GACTCTTCAAGCATGAATTT+GGG | - | tig0013377:55617-55636 | None:intergenic | 35.0% | |
| GCCTAAACTTCAAATTGTTG+AGG | - | tig0013377:55639-55658 | None:intergenic | 35.0% | |
| TCCGCTTATACTTGTATTGA+TGG | + | tig0013377:55706-55725 | Msa1353430:three_prime_UTR | 35.0% | |
| ! | ATCAGGTTAAAAGCTTTTGG+AGG | + | tig0013377:55745-55764 | Msa1353430:three_prime_UTR | 35.0% |
| CGTTACAAAAATTCCTCCAT+TGG | - | tig0013377:55810-55829 | None:intergenic | 35.0% | |
| ATATACTCATCCTCATAGGA+GGG | + | tig0013377:55846-55865 | Msa1353430:three_prime_UTR | 35.0% | |
| CTGTTGAATACAACATTGGT+GGG | - | tig0013377:55903-55922 | None:intergenic | 35.0% | |
| TCTGTTGAATACAACATTGG+TGG | - | tig0013377:55904-55923 | None:intergenic | 35.0% | |
| TGGGGAGAAGATGAAGAAAA+TGG | - | tig0013377:46891-46910 | None:intergenic | 40.0% | |
| !! | GTGTTCTAGGTTACGTTTTG+GGG | - | tig0013377:46909-46928 | None:intergenic | 40.0% |
| !! | GGTGTTCTAGGTTACGTTTT+GGG | - | tig0013377:46910-46929 | None:intergenic | 40.0% |
| CAAAACGTAACCTAGAACAC+CGG | + | tig0013377:46909-46928 | Msa1353430:five_prime_UTR | 40.0% | |
| CGACATTCCAAGGGTAAAAT+GGG | + | tig0013377:46935-46954 | Msa1353430:exon | 40.0% | |
| ! | TTCAGTGTTGAGTCGTTGAA+CGG | - | tig0013377:47014-47033 | None:intergenic | 40.0% |
| ACTTTCGTAACTGTTTCCGT+TGG | + | tig0013377:47034-47053 | Msa1353430:CDS | 40.0% | |
| AGCGAAAGTGAAATCACGAT+AGG | - | tig0013377:47146-47165 | None:intergenic | 40.0% | |
| !! | GATTTCACTTTCGCTGCTTT+TGG | + | tig0013377:47151-47170 | Msa1353430:CDS | 40.0% |
| ! | GGGGACAAAATTGATTCTAG+AGG | - | tig0013377:47638-47657 | None:intergenic | 40.0% |
| TTTGTCCCCTCTAGTATGTT+TGG | + | tig0013377:47649-47668 | Msa1353430:intron | 40.0% | |
| CACAACCAAACATACTAGAG+GGG | - | tig0013377:47657-47676 | None:intergenic | 40.0% | |
| GCACAACCAAACATACTAGA+GGG | - | tig0013377:47658-47677 | None:intergenic | 40.0% | |
| !! | GCAGAATTGATTTTGCTTCC+AGG | - | tig0013377:47863-47882 | None:intergenic | 40.0% |
| TTCAGGGAAACATCTTCTTG+TGG | + | tig0013377:48024-48043 | Msa1353430:CDS | 40.0% | |
| TCAGGGAAACATCTTCTTGT+GGG | + | tig0013377:48025-48044 | Msa1353430:CDS | 40.0% | |
| TCTGGATGCATAATACAGGT+GGG | - | tig0013377:48116-48135 | None:intergenic | 40.0% | |
| ATCTGGATGCATAATACAGG+TGG | - | tig0013377:48117-48136 | None:intergenic | 40.0% | |
| GATGAGACAATACAGGAGAT+AGG | - | tig0013377:48612-48631 | None:intergenic | 40.0% | |
| CATCCGTTACGATGAAGAAT+TGG | + | tig0013377:48689-48708 | Msa1353430:CDS | 40.0% | |
| ACTGCTTTATCTTTCAGCAC+TGG | + | tig0013377:48744-48763 | Msa1353430:CDS | 40.0% | |
| !! | CTTTATCTTTCAGCACTGGT+AGG | + | tig0013377:48748-48767 | Msa1353430:intron | 40.0% |
| TGGACACTCATTCAAATGTG+TGG | - | tig0013377:48847-48866 | None:intergenic | 40.0% | |
| ATGTAACCAACCCCACTTAT+TGG | - | tig0013377:49051-49070 | None:intergenic | 40.0% | |
| !! | AATAAGTGGGGTTGGTTACA+TGG | + | tig0013377:49050-49069 | Msa1353430:intron | 40.0% |
| GAAAATGGCATTGCCCTTAA+AGG | - | tig0013377:49613-49632 | None:intergenic | 40.0% | |
| TAGTGTGATGCTAACTGTTG+CGG | + | tig0013377:50082-50101 | Msa1353430:intron | 40.0% | |
| AAAAACTTGCATCGGAGGAA+AGG | - | tig0013377:50157-50176 | None:intergenic | 40.0% | |
| TGAGAAAAAACTTGCATCGG+AGG | - | tig0013377:50162-50181 | None:intergenic | 40.0% | |
| CACTCGAAAAATCAAGACAG+GGG | - | tig0013377:50256-50275 | None:intergenic | 40.0% | |
| CCACTCGAAAAATCAAGACA+GGG | - | tig0013377:50257-50276 | None:intergenic | 40.0% | |
| TCCACTCGAAAAATCAAGAC+AGG | - | tig0013377:50258-50277 | None:intergenic | 40.0% | |
| TTTGCTCTGTTCCTCTTTAG+TGG | + | tig0013377:50315-50334 | Msa1353430:intron | 40.0% | |
| GAGAAAAGTAGCCACTAAAG+AGG | - | tig0013377:50329-50348 | None:intergenic | 40.0% | |
| AAACGGTTATAAAAGGAGGG+AGG | - | tig0013377:50384-50403 | None:intergenic | 40.0% | |
| CAGCTCAGTTTAACTCGAAA+TGG | - | tig0013377:50449-50468 | None:intergenic | 40.0% | |
| !! | ATCGTCGCCGTTTTATAAGA+TGG | + | tig0013377:50487-50506 | Msa1353430:intron | 40.0% |
| AATGATGGCACATGGCAAAT+GGG | - | tig0013377:50530-50549 | None:intergenic | 40.0% | |
| AAATGATGGCACATGGCAAA+TGG | - | tig0013377:50531-50550 | None:intergenic | 40.0% | |
| GTGACTTAAATGATGGCACA+TGG | - | tig0013377:50538-50557 | None:intergenic | 40.0% | |
| TGCAGGTGTGACTTAAATGA+TGG | - | tig0013377:50545-50564 | None:intergenic | 40.0% | |
| TACAACAGAGAAAAGGCGAA+AGG | - | tig0013377:50630-50649 | None:intergenic | 40.0% | |
| CAACCTGTACAACAGAGAAA+AGG | - | tig0013377:50637-50656 | None:intergenic | 40.0% | |
| ! | CTTTTCTCTGTTGTACAGGT+TGG | + | tig0013377:50635-50654 | Msa1353430:intron | 40.0% |
| GCAACATTAGAGTAGTTAGG+TGG | - | tig0013377:50762-50781 | None:intergenic | 40.0% | |
| GTGCATCAGCGATAAATATG+AGG | - | tig0013377:50936-50955 | None:intergenic | 40.0% | |
| CGCTAAAAAGCTGAGAGTTA+AGG | + | tig0013377:51024-51043 | Msa1353430:CDS | 40.0% | |
| AAGGTCCCACAAAATCATGT+GGG | - | tig0013377:51312-51331 | None:intergenic | 40.0% | |
| !!! | CCACAGATGTGTTTTGATCA+AGG | - | tig0013377:51331-51350 | None:intergenic | 40.0% |
| CCTTGATCAAAACACATCTG+TGG | + | tig0013377:51328-51347 | Msa1353430:intron | 40.0% | |
| CAAAACACATCTGTGGGATA+CGG | + | tig0013377:51335-51354 | Msa1353430:intron | 40.0% | |
| AAAACACATCTGTGGGATAC+GGG | + | tig0013377:51336-51355 | Msa1353430:intron | 40.0% | |
| TATGTGCGTGTTTGTATAGG+AGG | + | tig0013377:51917-51936 | Msa1353430:intron | 40.0% | |
| TCTATGGCATTCGTTCATTC+TGG | + | tig0013377:51989-52008 | Msa1353430:intron | 40.0% | |
| GTGGTGACCAAACTTATGTA+TGG | + | tig0013377:52030-52049 | Msa1353430:intron | 40.0% | |
| AACCACTCCGCATATTGTTA+AGG | + | tig0013377:52303-52322 | Msa1353430:intron | 40.0% | |
| TTCCTTAACAATATGCGGAG+TGG | - | tig0013377:52308-52327 | None:intergenic | 40.0% | |
| ! | CTGAAATTAGAGAGCGTGAT+TGG | + | tig0013377:52532-52551 | Msa1353430:CDS | 40.0% |
| TAATGTGGTTACCTGCCATA+TGG | + | tig0013377:52557-52576 | Msa1353430:CDS | 40.0% | |
| AAGTCTCCACACATATGCTT+GGG | - | tig0013377:52589-52608 | None:intergenic | 40.0% | |
| !!! | TTACAGGCGTTGGATTTTCA+GGG | - | tig0013377:52650-52669 | None:intergenic | 40.0% |
| !!! | TTTACAGGCGTTGGATTTTC+AGG | - | tig0013377:52651-52670 | None:intergenic | 40.0% |
| TGAAAATCCAACGCCTGTAA+AGG | + | tig0013377:52650-52669 | Msa1353430:CDS | 40.0% | |
| ACACATATCTTCTGTGGAAG+TGG | - | tig0013377:52722-52741 | None:intergenic | 40.0% | |
| !! | AAAATTGCCACAAGCACTGA+TGG | - | tig0013377:52939-52958 | None:intergenic | 40.0% |
| ! | ACCTTCAATCTGGAATTCAC+AGG | + | tig0013377:52999-53018 | Msa1353430:CDS | 40.0% |
| ! | CCTTCAATCTGGAATTCACA+GGG | + | tig0013377:53000-53019 | Msa1353430:CDS | 40.0% |
| ! | CTTCAATCTGGAATTCACAG+GGG | + | tig0013377:53001-53020 | Msa1353430:CDS | 40.0% |
| ! | TTGTGCTCATGATAGTGAAG+TGG | + | tig0013377:53054-53073 | Msa1353430:CDS | 40.0% |
| GCGGAGTCTTAAATCCAAAT+TGG | + | tig0013377:53282-53301 | Msa1353430:CDS | 40.0% | |
| ! | TGAGCCATGAAGTTGATTGA+AGG | + | tig0013377:53477-53496 | Msa1353430:intron | 40.0% |
| AACAGATTTGTGCTTCAGTG+AGG | + | tig0013377:53614-53633 | Msa1353430:CDS | 40.0% | |
| ATTTGTGCTTCAGTGAGGAT+GGG | + | tig0013377:53619-53638 | Msa1353430:CDS | 40.0% | |
| ! | TCTAAGACTTCCATCCATAC+TGG | - | tig0013377:53661-53680 | None:intergenic | 40.0% |
| !! | ACAAGTTGATGTGCCTATCA+CGG | + | tig0013377:53719-53738 | Msa1353430:CDS | 40.0% |
| ATTATCACTGTCCCCAAACA+TGG | + | tig0013377:53743-53762 | Msa1353430:CDS | 40.0% | |
| ATCAAAATGGGGTATACCTG+TGG | + | tig0013377:53790-53809 | Msa1353430:CDS | 40.0% | |
| GCAAATGATCCTGTAAGATG+AGG | + | tig0013377:53922-53941 | Msa1353430:intron | 40.0% | |
| ! | GGAAACTGATTCCTTCTTGT+AGG | + | tig0013377:53943-53962 | Msa1353430:intron | 40.0% |
| ! | AAATTTTTCCAGGGTAAGCC+AGG | + | tig0013377:54192-54211 | Msa1353430:intron | 40.0% |
| GATACTCTAGTTGAGCATTC+TGG | + | tig0013377:54304-54323 | Msa1353430:CDS | 40.0% | |
| !! | TTATCTTGAGTTGGGAAAGC+CGG | - | tig0013377:54364-54383 | None:intergenic | 40.0% |
| AATTGATCAAGCTTTGCCAC+TGG | - | tig0013377:54429-54448 | None:intergenic | 40.0% | |
| CAATAGGTTTATTGCGTACC+TGG | - | tig0013377:54604-54623 | None:intergenic | 40.0% | |
| !!! | GGTTTTTTTGGAGGCTCAAT+AGG | - | tig0013377:54620-54639 | None:intergenic | 40.0% |
| GCCTCCAAAAAAACCTGAAA+AGG | + | tig0013377:54625-54644 | Msa1353430:CDS | 40.0% | |
| !!! | GCCTTTTCAGGTTTTTTTGG+AGG | - | tig0013377:54629-54648 | None:intergenic | 40.0% |
| !!! | GGAGCCTTTTCAGGTTTTTT+TGG | - | tig0013377:54632-54651 | None:intergenic | 40.0% |
| CTTCAGTTCCATTGCTTTCT+GGG | + | tig0013377:54663-54682 | Msa1353430:CDS | 40.0% | |
| TTCAGTTCCATTGCTTTCTG+GGG | + | tig0013377:54664-54683 | Msa1353430:CDS | 40.0% | |
| TCCTCTAATGATACCTTTCC+AGG | - | tig0013377:54704-54723 | None:intergenic | 40.0% | |
| GTATCATTAGAGGAGAAGGA+TGG | + | tig0013377:54710-54729 | Msa1353430:CDS | 40.0% | |
| ACAATTGTCTGACTCTTCTG+AGG | - | tig0013377:54810-54829 | None:intergenic | 40.0% | |
| ! | TCGATTAGTTATGGCATGCT+TGG | + | tig0013377:54878-54897 | Msa1353430:intron | 40.0% |
| CGGTTCGATAAATATGCACT+TGG | + | tig0013377:54989-55008 | Msa1353430:intron | 40.0% | |
| GTGCTCATCCAAATACACTT+AGG | + | tig0013377:55074-55093 | Msa1353430:intron | 40.0% | |
| AGGATTATCTCCATCAACTC+TGG | + | tig0013377:55178-55197 | Msa1353430:CDS | 40.0% | |
| ATCTCCATCAACTCTGGATA+TGG | + | tig0013377:55184-55203 | Msa1353430:CDS | 40.0% | |
| ! | CATCAAGGATCTGAAGCATT+CGG | - | tig0013377:55214-55233 | None:intergenic | 40.0% |
| TGTTCAATCGGTATCAACTC+AGG | - | tig0013377:55269-55288 | None:intergenic | 40.0% | |
| AGGTTTGTGACATCTCTTGT+TGG | + | tig0013377:55369-55388 | Msa1353430:intron | 40.0% | |
| TCTTCATCTTGCCAGATACA+TGG | + | tig0013377:55460-55479 | Msa1353430:intron | 40.0% | |
| GAATTGTATCGCCATGTATC+TGG | - | tig0013377:55474-55493 | None:intergenic | 40.0% | |
| GGACTCTTCAAGCATGAATT+TGG | - | tig0013377:55618-55637 | None:intergenic | 40.0% | |
| GAGAAATCAGAGCAGAAATC+AGG | + | tig0013377:55728-55747 | Msa1353430:three_prime_UTR | 40.0% | |
| !! | AGGTTAAAAGCTTTTGGAGG+AGG | + | tig0013377:55748-55767 | Msa1353430:three_prime_UTR | 40.0% |
| TTTCATGGAGAATCCAATGG+AGG | + | tig0013377:55794-55813 | Msa1353430:three_prime_UTR | 40.0% | |
| GATATACTCATCCTCATAGG+AGG | + | tig0013377:55845-55864 | Msa1353430:three_prime_UTR | 40.0% | |
| ACAAAATTTGCCCTCCTATG+AGG | - | tig0013377:55859-55878 | None:intergenic | 40.0% | |
| AAAGATATGCGTGCAGGTAA+AGG | - | tig0013377:55954-55973 | None:intergenic | 40.0% | |
| !! | CGGTGTTCTAGGTTACGTTT+TGG | - | tig0013377:46911-46930 | None:intergenic | 45.0% |
| GCGACATTCCAAGGGTAAAA+TGG | + | tig0013377:46934-46953 | Msa1353430:exon | 45.0% | |
| TTCGAACCATACAGAGCCAT+CGG | + | tig0013377:46962-46981 | Msa1353430:CDS | 45.0% | |
| TGAGTCGTTGAACGGAGAAA+GGG | - | tig0013377:47006-47025 | None:intergenic | 45.0% | |
| TTGAGTCGTTGAACGGAGAA+AGG | - | tig0013377:47007-47026 | None:intergenic | 45.0% | |
| CGCACAACCAAACATACTAG+AGG | - | tig0013377:47659-47678 | None:intergenic | 45.0% | |
| TTGGAGCAGTCATACTGCTA+AGG | + | tig0013377:47956-47975 | Msa1353430:CDS | 45.0% | |
| CATCTTCTTGTGGGCATTCA+AGG | + | tig0013377:48034-48053 | Msa1353430:CDS | 45.0% | |
| TCTAACACAATGTGGCCAAC+AGG | - | tig0013377:48080-48099 | None:intergenic | 45.0% | |
| TGGATGCATAATACAGGTGG+GGG | - | tig0013377:48114-48133 | None:intergenic | 45.0% | |
| CTGGATGCATAATACAGGTG+GGG | - | tig0013377:48115-48134 | None:intergenic | 45.0% | |
| GAGGCTGTTTGGGAGAATTT+AGG | - | tig0013377:48391-48410 | None:intergenic | 45.0% | |
| GTTCTTATTGGGAGTGAGCA+AGG | + | tig0013377:48522-48541 | Msa1353430:CDS | 45.0% | |
| ! | AGCAACAACATCTAGAGCAG+GGG | - | tig0013377:48634-48653 | None:intergenic | 45.0% |
| ! | CAGCAACAACATCTAGAGCA+GGG | - | tig0013377:48635-48654 | None:intergenic | 45.0% |
| ! | ACAGCAACAACATCTAGAGC+AGG | - | tig0013377:48636-48655 | None:intergenic | 45.0% |
| ! | GCTCTAGATGTTGTTGCTGT+TGG | + | tig0013377:48636-48655 | Msa1353430:CDS | 45.0% |
| ! | TGTTGTTGCTGTTGGCTGTA+CGG | + | tig0013377:48644-48663 | Msa1353430:CDS | 45.0% |
| TTCATTCGCCATTAACCACG+AGG | + | tig0013377:48981-49000 | Msa1353430:intron | 45.0% | |
| CTTCTACCAATAAGTGGGGT+TGG | + | tig0013377:49042-49061 | Msa1353430:intron | 45.0% | |
| GTTGTAAGAGAGGCTCATGA+TGG | + | tig0013377:49281-49300 | Msa1353430:CDS | 45.0% | |
| ! | TTCGAAAGCGCAAAAGACGA+GGG | - | tig0013377:49974-49993 | None:intergenic | 45.0% |
| ! | GTCTTTTGCGCTTTCGAAGT+GGG | + | tig0013377:49976-49995 | Msa1353430:CDS | 45.0% |
| TCTTACTTTATGCAGAGCGG+AGG | - | tig0013377:50011-50030 | None:intergenic | 45.0% | |
| !!! | CCCTGTCTTGATTTTTCGAG+TGG | + | tig0013377:50254-50273 | Msa1353430:intron | 45.0% |
| ! | ATAAAAGGAGGGAGGCACAA+TGG | - | tig0013377:50376-50395 | None:intergenic | 45.0% |
| ACCTGCAACTTACATGTGAC+AGG | + | tig0013377:50558-50577 | Msa1353430:intron | 45.0% | |
| ACCTGTCACATGTAAGTTGC+AGG | - | tig0013377:50562-50581 | None:intergenic | 45.0% | |
| GGAAGACACATTCTTTCTGC+TGG | + | tig0013377:50593-50612 | Msa1353430:CDS | 45.0% | |
| ! | TCGCCTTTTCTCTGTTGTAC+AGG | + | tig0013377:50631-50650 | Msa1353430:CDS | 45.0% |
| ! | ATGGGACCCACATGATTTTG+TGG | + | tig0013377:51303-51322 | Msa1353430:intron | 45.0% |
| ! | TGGGACCCACATGATTTTGT+GGG | + | tig0013377:51304-51323 | Msa1353430:intron | 45.0% |
| CAAGGTCCCACAAAATCATG+TGG | - | tig0013377:51313-51332 | None:intergenic | 45.0% | |
| TGTCAACACGGATAAGGACT+AGG | + | tig0013377:51643-51662 | Msa1353430:intron | 45.0% | |
| GTCAACACGGATAAGGACTA+GGG | + | tig0013377:51644-51663 | Msa1353430:intron | 45.0% | |
| !! | GAATATGGTCGGGTTGAAGA+GGG | - | tig0013377:51765-51784 | None:intergenic | 45.0% |
| !! | TGAATATGGTCGGGTTGAAG+AGG | - | tig0013377:51766-51785 | None:intergenic | 45.0% |
| CCACAATCAAACGCAATCAC+AGG | - | tig0013377:51960-51979 | None:intergenic | 45.0% | |
| CCTGTGATTGCGTTTGATTG+TGG | + | tig0013377:51957-51976 | Msa1353430:CDS | 45.0% | |
| AGAGCGTGATTGGTGTAATG+TGG | + | tig0013377:52542-52561 | Msa1353430:CDS | 45.0% | |
| ATGCTTGGGCAGTATCCATA+TGG | - | tig0013377:52575-52594 | None:intergenic | 45.0% | |
| ATACTGCCCAAGCATATGTG+TGG | + | tig0013377:52580-52599 | Msa1353430:CDS | 45.0% | |
| GAAGTCTCCACACATATGCT+TGG | - | tig0013377:52590-52609 | None:intergenic | 45.0% | |
| ATCCAACGCCTGTAAAGGTT+AGG | + | tig0013377:52655-52674 | Msa1353430:intron | 45.0% | |
| GAGGAAGTCCTAACCTTTAC+AGG | - | tig0013377:52666-52685 | None:intergenic | 45.0% | |
| !!! | TTTGCCATTTTAGGGACAGC+TGG | + | tig0013377:52956-52975 | Msa1353430:CDS | 45.0% |
| CCCTGTGAATTCCAGATTGA+AGG | - | tig0013377:53003-53022 | None:intergenic | 45.0% | |
| ! | GCTCATGATAGTGAAGTGGT+TGG | + | tig0013377:53058-53077 | Msa1353430:CDS | 45.0% |
| GATTTGTGCTTCAGTGAGGA+TGG | + | tig0013377:53618-53637 | Msa1353430:CDS | 45.0% | |
| ATGGCTTCTTTCGTCCAGTA+TGG | + | tig0013377:53644-53663 | Msa1353430:CDS | 45.0% | |
| CTTCTTTCGTCCAGTATGGA+TGG | + | tig0013377:53648-53667 | Msa1353430:CDS | 45.0% | |
| ! | GACAGTGATAATGCCGTGAT+AGG | - | tig0013377:53735-53754 | None:intergenic | 45.0% |
| TTGCCATCTATCTCTTCCAC+AGG | + | tig0013377:54280-54299 | Msa1353430:CDS | 45.0% | |
| TCTCCTGTGGAAGAGATAGA+TGG | - | tig0013377:54286-54305 | None:intergenic | 45.0% | |
| ! | CTCAACTAGAGTATCTCCTG+TGG | - | tig0013377:54299-54318 | None:intergenic | 45.0% |
| !! | TTAGGTTGAGAGGCATTCAC+CGG | - | tig0013377:54334-54353 | None:intergenic | 45.0% |
| CTCTCAACCTAAAGATGCTC+CGG | + | tig0013377:54342-54361 | Msa1353430:CDS | 45.0% | |
| ! | AGGAAGAATGGAGCCTTTTC+AGG | - | tig0013377:54641-54660 | None:intergenic | 45.0% |
| AAAGCAATGGAACTGAAGGC+AGG | - | tig0013377:54661-54680 | None:intergenic | 45.0% | |
| CCAGAAAGCAATGGAACTGA+AGG | - | tig0013377:54665-54684 | None:intergenic | 45.0% | |
| CCTTCAGTTCCATTGCTTTC+TGG | + | tig0013377:54662-54681 | Msa1353430:CDS | 45.0% | |
| GGGGAAATATTGTTTGAGCC+TGG | + | tig0013377:54683-54702 | Msa1353430:CDS | 45.0% | |
| !! | GCCTGGAAAGGTATCATTAG+AGG | + | tig0013377:54700-54719 | Msa1353430:CDS | 45.0% |
| GTGCATATTTATCGAACCGG+TGG | - | tig0013377:54988-55007 | None:intergenic | 45.0% | |
| GGATGAGCACTCACCAAAAA+TGG | - | tig0013377:55064-55083 | None:intergenic | 45.0% | |
| GCTCATCATTGTCGTCATCA+AGG | - | tig0013377:55229-55248 | None:intergenic | 45.0% | |
| ! | GATACCGATTGAACAACTCG+TGG | + | tig0013377:55274-55293 | Msa1353430:CDS | 45.0% |
| GTTTCAAAGTACGAGGTGTG+TGG | + | tig0013377:55573-55592 | Msa1353430:CDS | 45.0% | |
| AACGTAACCTAGAACACCGG+CGG | + | tig0013377:46912-46931 | Msa1353430:five_prime_UTR | 50.0% | |
| ! | ATGCATCCGATGGCTCTGTA+TGG | - | tig0013377:46971-46990 | None:intergenic | 50.0% |
| TTGAACGGAGAAAGGGACAC+CGG | - | tig0013377:46999-47018 | None:intergenic | 50.0% | |
| ! | AGCAAGGCACTATGCAGCTT+TGG | + | tig0013377:48538-48557 | Msa1353430:CDS | 50.0% |
| AGCAGGGGATGAGACAATAC+AGG | - | tig0013377:48619-48638 | None:intergenic | 50.0% | |
| ! | ACTTTTACGCATTCCACGCG+TGG | + | tig0013377:48714-48733 | Msa1353430:CDS | 50.0% |
| TTTAGATGGACAGCCCCTTC+TGG | + | tig0013377:49196-49215 | Msa1353430:intron | 50.0% | |
| TGAACCTCCAGAAGCCAGAA+GGG | - | tig0013377:49213-49232 | None:intergenic | 50.0% | |
| ATGAACCTCCAGAAGCCAGA+AGG | - | tig0013377:49214-49233 | None:intergenic | 50.0% | |
| GCTCCACTCAGTTGTAAGAG+AGG | + | tig0013377:49271-49290 | Msa1353430:CDS | 50.0% | |
| GAGCCTCTCTTACAACTGAG+TGG | - | tig0013377:49277-49296 | None:intergenic | 50.0% | |
| GCTGATGAGCTCATTAGCAC+TGG | - | tig0013377:49341-49360 | None:intergenic | 50.0% | |
| ! | CTTCGAAAGCGCAAAAGACG+AGG | - | tig0013377:49975-49994 | None:intergenic | 50.0% |
| ! | CGTCTTTTGCGCTTTCGAAG+TGG | + | tig0013377:49975-49994 | Msa1353430:CDS | 50.0% |
| TCGGAGGAAAGGTTGACAGA+TGG | - | tig0013377:50146-50165 | None:intergenic | 50.0% | |
| ACACATTCTTTCTGCTGGCC+AGG | + | tig0013377:50598-50617 | Msa1353430:CDS | 50.0% | |
| TTGGGCAGTATCCATATGGC+AGG | - | tig0013377:52571-52590 | None:intergenic | 50.0% | |
| GTCCTAACCTTTACAGGCGT+TGG | - | tig0013377:52660-52679 | None:intergenic | 50.0% | |
| ACTTGTGCCATCAGTGCTTG+TGG | + | tig0013377:52929-52948 | Msa1353430:CDS | 50.0% | |
| ACCACCAGCTGTCCCTAAAA+TGG | - | tig0013377:52963-52982 | None:intergenic | 50.0% | |
| !! | TTTTAGGGACAGCTGGTGGT+TGG | + | tig0013377:52963-52982 | Msa1353430:CDS | 50.0% |
| TATGGGTTTCATTGCAGGCC+TGG | + | tig0013377:53248-53267 | Msa1353430:intron | 50.0% | |
| ATGGGTTTCATTGCAGGCCT+GGG | + | tig0013377:53249-53268 | Msa1353430:intron | 50.0% | |
| AGGCCTGGGATTTCAAAGAG+CGG | + | tig0013377:53263-53282 | Msa1353430:intron | 50.0% | |
| !! | ACTCCGCTCTTTGAAATCCC+AGG | - | tig0013377:53269-53288 | None:intergenic | 50.0% |
| AATCATCTGCTACGGTAGCC+AGG | - | tig0013377:53524-53543 | None:intergenic | 50.0% | |
| GCTTCAGTGAGGATGGGAAA+TGG | + | tig0013377:53625-53644 | Msa1353430:CDS | 50.0% | |
| GACTGCTAGAGAACATTGCC+TGG | - | tig0013377:54213-54232 | None:intergenic | 50.0% | |
| AGTTGAGCATTCTGGTGAGC+CGG | + | tig0013377:54312-54331 | Msa1353430:CDS | 50.0% | |
| !! | CGGAGCATCTTTAGGTTGAG+AGG | - | tig0013377:54344-54363 | None:intergenic | 50.0% |
| CATTGCTTCCAAAGAGCCAG+TGG | + | tig0013377:54410-54429 | Msa1353430:CDS | 50.0% | |
| !! | AAGCTTTGCCACTGGCTCTT+TGG | - | tig0013377:54421-54440 | None:intergenic | 50.0% |
| GGAACTGAAGGCAGGAAGAA+TGG | - | tig0013377:54653-54672 | None:intergenic | 50.0% | |
| AAGTCGTTGTCTCTGAGCCT+CGG | + | tig0013377:54942-54961 | Msa1353430:intron | 50.0% | |
| TTCAGTGCATGGTATGGCAG+AGG | + | tig0013377:55539-55558 | Msa1353430:CDS | 50.0% | |
| TCAGTGCATGGTATGGCAGA+GGG | + | tig0013377:55540-55559 | Msa1353430:CDS | 50.0% | |
| ! | GTTGCTGTTGGCTGTACGGA+CGG | + | tig0013377:48648-48667 | Msa1353430:CDS | 55.0% |
| GAACCTCCAGAAGCCAGAAG+GGG | - | tig0013377:49212-49231 | None:intergenic | 55.0% | |
| ! | CTGGCTTCTGGAGGTTCATC+TGG | + | tig0013377:49215-49234 | Msa1353430:CDS | 55.0% |
| AAAGGCGAAAGGCTCGATCC+TGG | - | tig0013377:50619-50638 | None:intergenic | 55.0% | |
| !! | GGCGTTGGATTTTCAGGGCA+TGG | - | tig0013377:52645-52664 | None:intergenic | 55.0% |
| !! | GCCATTTTAGGGACAGCTGG+TGG | + | tig0013377:52959-52978 | Msa1353430:CDS | 55.0% |
| GAACATTGCCTGGCTTACCC+TGG | - | tig0013377:54203-54222 | None:intergenic | 55.0% | |
| ! | GGGAAAGCCGGAGCATCTTT+AGG | - | tig0013377:54352-54371 | None:intergenic | 55.0% |
| AATGTCGCCGCCGGTGTTCT+AGG | - | tig0013377:46922-46941 | None:intergenic | 60.0% | |
| TACCCTTGGAATGTCGCCGC+CGG | - | tig0013377:46931-46950 | None:intergenic | 60.0% | |
| GCCATCGGATGCATAGCCAC+CGG | + | tig0013377:46977-46996 | Msa1353430:CDS | 60.0% | |
| ACCGGTGGCTATGCATCCGA+TGG | - | tig0013377:46981-47000 | None:intergenic | 60.0% | |
| AACGGAGAAAGGGACACCGG+TGG | - | tig0013377:46996-47015 | None:intergenic | 60.0% | |
| AGCAGTGACAGAACCACGCG+TGG | - | tig0013377:48730-48749 | None:intergenic | 60.0% | |
| CTCTGCAGGGTGTGCATGTG+TGG | - | tig0013377:51179-51198 | None:intergenic | 60.0% | |
| ACACCGGCGGCGACATTCCA+AGG | + | tig0013377:46925-46944 | Msa1353430:five_prime_UTR | 65.0% | |
| CACCGGCGGCGACATTCCAA+GGG | + | tig0013377:46926-46945 | Msa1353430:five_prime_UTR | 65.0% | |
| !! | GGACAGCCCCTTCTGGCTTC+TGG | + | tig0013377:49203-49222 | Msa1353430:CDS | 65.0% |
| !! | CAGCCCCTTCTGGCTTCTGG+AGG | + | tig0013377:49206-49225 | Msa1353430:CDS | 65.0% |
| GGGTGTGCATGTGTGGACGC+TGG | - | tig0013377:51172-51191 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0013377 | gene | 46875 | 56055 | 46875 | ID=Msa1353430;Name=Msa1353430 |
| tig0013377 | mRNA | 46875 | 56055 | 46875 | ID=Msa1353430-mRNA-1;Parent=Msa1353430;Name=Msa1353430-mRNA-1;_AED=0.03;_eAED=0.03;_QI=78|1|1|1|1|1|16|425|910 |
| tig0013377 | exon | 46875 | 47207 | 46875 | ID=Msa1353430-mRNA-1:exon:8640;Parent=Msa1353430-mRNA-1 |
| tig0013377 | exon | 47948 | 48151 | 47948 | ID=Msa1353430-mRNA-1:exon:8641;Parent=Msa1353430-mRNA-1 |
| tig0013377 | exon | 48522 | 48765 | 48522 | ID=Msa1353430-mRNA-1:exon:8642;Parent=Msa1353430-mRNA-1 |
| tig0013377 | exon | 49201 | 49376 | 49201 | ID=Msa1353430-mRNA-1:exon:8643;Parent=Msa1353430-mRNA-1 |
| tig0013377 | exon | 49942 | 50024 | 49942 | ID=Msa1353430-mRNA-1:exon:8644;Parent=Msa1353430-mRNA-1 |
| tig0013377 | exon | 50580 | 50652 | 50580 | ID=Msa1353430-mRNA-1:exon:8645;Parent=Msa1353430-mRNA-1 |
| tig0013377 | exon | 50980 | 51045 | 50980 | ID=Msa1353430-mRNA-1:exon:8646;Parent=Msa1353430-mRNA-1 |
| tig0013377 | exon | 51936 | 51978 | 51936 | ID=Msa1353430-mRNA-1:exon:8647;Parent=Msa1353430-mRNA-1 |
| tig0013377 | exon | 52532 | 52671 | 52532 | ID=Msa1353430-mRNA-1:exon:8648;Parent=Msa1353430-mRNA-1 |
| tig0013377 | exon | 52929 | 53141 | 52929 | ID=Msa1353430-mRNA-1:exon:8649;Parent=Msa1353430-mRNA-1 |
| tig0013377 | exon | 53265 | 53349 | 53265 | ID=Msa1353430-mRNA-1:exon:8650;Parent=Msa1353430-mRNA-1 |
| tig0013377 | exon | 53517 | 53811 | 53517 | ID=Msa1353430-mRNA-1:exon:8651;Parent=Msa1353430-mRNA-1 |
| tig0013377 | exon | 54204 | 54462 | 54204 | ID=Msa1353430-mRNA-1:exon:8652;Parent=Msa1353430-mRNA-1 |
| tig0013377 | exon | 54605 | 54827 | 54605 | ID=Msa1353430-mRNA-1:exon:8653;Parent=Msa1353430-mRNA-1 |
| tig0013377 | exon | 55153 | 55370 | 55153 | ID=Msa1353430-mRNA-1:exon:8654;Parent=Msa1353430-mRNA-1 |
| tig0013377 | exon | 55475 | 56055 | 55475 | ID=Msa1353430-mRNA-1:exon:8655;Parent=Msa1353430-mRNA-1 |
| tig0013377 | five_prime_UTR | 46875 | 46952 | 46875 | ID=Msa1353430-mRNA-1:five_prime_utr;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 46953 | 47207 | 46953 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 47948 | 48151 | 47948 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 48522 | 48765 | 48522 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 49201 | 49376 | 49201 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 49942 | 50024 | 49942 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 50580 | 50652 | 50580 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 50980 | 51045 | 50980 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 51936 | 51978 | 51936 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 52532 | 52671 | 52532 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 52929 | 53141 | 52929 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 53265 | 53349 | 53265 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 53517 | 53811 | 53517 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 54204 | 54462 | 54204 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 54605 | 54827 | 54605 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 55153 | 55370 | 55153 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | CDS | 55475 | 55630 | 55475 | ID=Msa1353430-mRNA-1:cds;Parent=Msa1353430-mRNA-1 |
| tig0013377 | three_prime_UTR | 55631 | 56055 | 55631 | ID=Msa1353430-mRNA-1:three_prime_utr;Parent=Msa1353430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
