AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1275680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1275680 MtrunA17_Chr8g0342581 95.041 121 6 0 1 121 1 121 1.53e-81 236
Msa1275680 MtrunA17_Chr2g0330071 58.140 129 37 5 1 121 1 120 2.02e-40 132
Msa1275680 MtrunA17_Chr2g0299651 63.043 46 17 0 75 120 13 58 7.28e-17 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1275680 AT3G13898.1 39.669 121 61 4 2 120 8 118 4.12e-19 77.8

Find 193 sgRNAs with CRISPR-Local

Find 348 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATACAAGTGCTTTGGTTTA+AGG 0.090617 8_3:+9827968 None:intergenic
GGCATTCTTGTTTCTCTTCT+TGG 0.114794 8_3:+9828023 None:intergenic
CATTGATACACCTGGGATTT+TGG 0.122171 8_3:-9829273 Msa1275680:three_prime_UTR
GATAGAGAAGTGAGTAAAAT+AGG 0.145093 8_3:-9830713 Msa1275680:CDS
AGATAATCTGCCAGAAATTT+TGG 0.147637 8_3:-9828604 Msa1275680:three_prime_UTR
ATGTTTCTTTAGTTCAATTT+TGG 0.169067 8_3:-9826754 Msa1275680:three_prime_UTR
ATCAAAATAGTCCTGGTATT+TGG 0.197584 8_3:+9829434 None:intergenic
GCATAAGGTGGTGAAGATTT+TGG 0.208551 8_3:+9830917 None:intergenic
TTGTTCTTCTTGGATATATC+AGG 0.214420 8_3:-9829176 Msa1275680:three_prime_UTR
ATACGGATTATAAGTATTTA+AGG 0.228633 8_3:-9829304 Msa1275680:three_prime_UTR
AAACCAAAGCACTTGTATTC+TGG 0.228894 8_3:-9827964 Msa1275680:three_prime_UTR
AATACTGCTAGGAATCTTAT+TGG 0.238602 8_3:-9829632 Msa1275680:three_prime_UTR
TGGACCGAGTTTGGCGTATT+TGG 0.240694 8_3:-9829498 Msa1275680:three_prime_UTR
TTGTGACCATCCAAAATTTC+TGG 0.250913 8_3:+9828594 None:intergenic
AAGCAACTTAACATAATCTT+TGG 0.271321 8_3:+9829601 None:intergenic
TTAATAAATAATAATATAAA+AGG 0.273009 8_3:+9826776 None:intergenic
TCCTTCTGGTCACGTGGTTT+CGG 0.274078 8_3:+9828795 None:intergenic
GTTACAGTTAAAGGGTATAA+TGG 0.276700 8_3:-9830774 Msa1275680:intron
AACTCTTCAAATAGTGAGTT+TGG 0.288711 8_3:-9831087 Msa1275680:CDS
AGCGGCAATATTGTTCTTCT+TGG 0.291223 8_3:-9829186 Msa1275680:three_prime_UTR
ACTCATGGTATTTCACATTC+AGG 0.299123 8_3:-9831035 Msa1275680:intron
TACACGGAGGCCTTTCCTTC+TGG 0.303728 8_3:+9828781 None:intergenic
TATGTTAAGTTGCTTAAATA+TGG 0.304848 8_3:-9829593 Msa1275680:three_prime_UTR
ATAATGCTTTCTCAAATTCA+TGG 0.310089 8_3:+9828653 None:intergenic
TCTTGGGCTTGATCCTTCTA+TGG 0.315254 8_3:-9828286 Msa1275680:three_prime_UTR
ATCCCATCGTTTCTTCCTTC+TGG 0.317491 8_3:+9828204 None:intergenic
TGCTTGAAGGTTGCTGCTCT+TGG 0.323045 8_3:-9829548 Msa1275680:three_prime_UTR
TTTGAGAAAGCATTATATTC+TGG 0.326466 8_3:-9828646 Msa1275680:three_prime_UTR
CCAAGCAGAACAAGCCATTT+GGG 0.329339 8_3:-9830626 Msa1275680:CDS
GCTAAAGCCTCTTGCTGTTC+CGG 0.334792 8_3:+9828450 None:intergenic
GCGCCTGTCTGTCTTTCCTT+TGG 0.337022 8_3:+9827933 None:intergenic
GTAGATCACTGTCTCGTTCC+AGG 0.337515 8_3:-9828140 Msa1275680:three_prime_UTR
AAGGATCTGGAGGAAGAAAA+TGG 0.337588 8_3:-9828693 Msa1275680:three_prime_UTR
TGAAGCAGATCACCGTAAAA+AGG 0.347243 8_3:+9829701 None:intergenic
TAAGAGGATTGGACCGAGTT+TGG 0.351236 8_3:-9829507 Msa1275680:three_prime_UTR
AGACAGACAGGCGCTAAAAT+AGG 0.352760 8_3:-9827924 Msa1275680:intron
TCGATGAGTTTCCTCGTCTT+GGG 0.355491 8_3:-9829733 Msa1275680:three_prime_UTR
GGAAGGCAGCTGTCGTCTCT+TGG 0.361895 8_3:-9828303 Msa1275680:three_prime_UTR
TTGTTCCTGGAGAAGGCCTT+AGG 0.365376 8_3:-9828092 Msa1275680:three_prime_UTR
ACGAGGAAACTCATCGATTA+TGG 0.370750 8_3:+9829739 None:intergenic
CCACCACATGAAGTTGTTCC+TGG 0.371926 8_3:-9828105 Msa1275680:three_prime_UTR
TGGATATATCAGGGTCTTGT+GGG 0.379230 8_3:-9829166 Msa1275680:three_prime_UTR
ACCAAGCAGAACAAGCCATT+TGG 0.382983 8_3:-9830627 Msa1275680:CDS
TCCACCCTATGTAGAATGTC+AGG 0.383879 8_3:+9828552 None:intergenic
TGGAAAGAGAGGAAGGGTTA+AGG 0.386417 8_3:-9828524 Msa1275680:three_prime_UTR
TCATATTATTTATGTTCTCC+TGG 0.387807 8_3:-9826849 Msa1275680:three_prime_UTR
ATCGATGAGTTTCCTCGTCT+TGG 0.401400 8_3:-9829734 Msa1275680:three_prime_UTR
ATGTTTCTGTTACAGTTAAA+GGG 0.401446 8_3:-9830782 Msa1275680:intron
CAGAAAGTATGTCAAAGAAA+AGG 0.406781 8_3:-9830748 Msa1275680:CDS
GAACGAGCAACAAATTTAAC+AGG 0.410008 8_3:+9826611 None:intergenic
TACCACTAAGTCGTTGTTTG+TGG 0.410993 8_3:-9829330 Msa1275680:three_prime_UTR
AACGGTTGGTGTTTGACGTT+GGG 0.415669 8_3:+9829853 None:intergenic
TTACAGTTAAAGGGTATAAT+GGG 0.416507 8_3:-9830773 Msa1275680:intron
GCTTGAAGGTTGCTGCTCTT+GGG 0.424098 8_3:-9829547 Msa1275680:three_prime_UTR
ATAGAGAAGTGAGTAAAATA+GGG 0.425518 8_3:-9830712 Msa1275680:CDS
GCTTTAGCTTCCAAAACTGC+TGG 0.426248 8_3:+9828753 None:intergenic
TTGGATATATCAGGGTCTTG+TGG 0.430521 8_3:-9829167 Msa1275680:three_prime_UTR
TTTCCAGAATACAAGTGCTT+TGG 0.430988 8_3:+9827961 None:intergenic
TTCTTTGCAGGCAATGATGA+TGG 0.436560 8_3:-9826900 Msa1275680:intron
CCCAAATGGCTTGTTCTGCT+TGG 0.440344 8_3:+9830626 None:intergenic
AAGAGGCTTTAGCTGAGATT+AGG 0.440739 8_3:-9828440 Msa1275680:three_prime_UTR
TGGCGTATTTGGAGCAGGTT+AGG 0.444195 8_3:-9829487 Msa1275680:three_prime_UTR
AAAGAACTCTTCCCGACATT+GGG 0.444776 8_3:+9829401 None:intergenic
ACCCACAAACAACGACTTAG+TGG 0.446803 8_3:+9829328 None:intergenic
GTCGTTGTTTGTGGGTCATA+CGG 0.447797 8_3:-9829321 Msa1275680:three_prime_UTR
GAAGCGTTGAAGACTTCAAT+TGG 0.448210 8_3:-9828993 Msa1275680:three_prime_UTR
GAAGAGTTGGAAAGAGAGGA+AGG 0.448886 8_3:-9828531 Msa1275680:three_prime_UTR
GAAGGCAGCTGTCGTCTCTT+GGG 0.448895 8_3:-9828302 Msa1275680:three_prime_UTR
TGGGTATACTATTGCTCAGC+AGG 0.456682 8_3:-9829147 Msa1275680:three_prime_UTR
GCAGTTCACAACAGAAAGAA+TGG 0.457219 8_3:-9828325 Msa1275680:three_prime_UTR
GGAGCAGGTTAGGCAGCATA+TGG 0.458049 8_3:-9829477 Msa1275680:three_prime_UTR
CACTTGCATTTCCAACTCTC+AGG 0.458267 8_3:+9830581 None:intergenic
AAATCAACGACTGTCTGAAC+AGG 0.462069 8_3:-9828833 Msa1275680:three_prime_UTR
GGTGGAAGAGTTGGAAAGAG+AGG 0.462216 8_3:-9828535 Msa1275680:three_prime_UTR
CTGAGACGCTGTTTCTTGCT+AGG 0.462261 8_3:+9828162 None:intergenic
GGATGTGTACTGTGCTTAAG+AGG 0.463986 8_3:-9829523 Msa1275680:three_prime_UTR
GGCAATGATGATGGCTTTGT+GGG 0.467993 8_3:-9826891 Msa1275680:three_prime_UTR
GTATCGCTGTAAGTGCTTGA+AGG 0.470038 8_3:-9829561 Msa1275680:three_prime_UTR
ATCTGAGGAGGATATGAAGT+TGG 0.470979 8_3:-9829033 Msa1275680:three_prime_UTR
TCGAATTTCCTTGAAACGGT+TGG 0.471228 8_3:+9828357 None:intergenic
AGAGCCGACCAACCGTTTCA+AGG 0.471571 8_3:-9828365 Msa1275680:three_prime_UTR
AAGATTACCGTCGTACCAAA+TGG 0.472320 8_3:-9829908 Msa1275680:CDS
ATTCTGTTAATAGCCATAGA+AGG 0.473599 8_3:+9828273 None:intergenic
CAAGGAAATTCGACAAGGAC+AGG 0.474490 8_3:-9828347 Msa1275680:three_prime_UTR
CTTGTCGAATTTCCTTGAAA+CGG 0.475481 8_3:+9828353 None:intergenic
CTGGTATTTGGATCAATTGA+AGG 0.475786 8_3:+9829446 None:intergenic
ACTGATTTGCAGCCGTTGGA+TGG 0.477148 8_3:-9829059 Msa1275680:three_prime_UTR
AAAAGAACTCTTCCCGACAT+TGG 0.486940 8_3:+9829400 None:intergenic
CAAGACTGATTTGCAGCCGT+TGG 0.487122 8_3:-9829063 Msa1275680:three_prime_UTR
AGAAAGTATGTCAAAGAAAA+GGG 0.489218 8_3:-9830747 Msa1275680:CDS
CTTTAGCTTCCAAAACTGCT+GGG 0.494188 8_3:+9828754 None:intergenic
ATACCATGAGTTGAAAGAAA+AGG 0.497168 8_3:+9831047 None:intergenic
GAGTTTGGCGTATTTGGAGC+AGG 0.498174 8_3:-9829492 Msa1275680:three_prime_UTR
ATAATATTCCGATCCTCAAA+CGG 0.499586 8_3:+9829245 None:intergenic
ACCACTAAGTCGTTGTTTGT+GGG 0.504320 8_3:-9829329 Msa1275680:three_prime_UTR
TGTTCCTGGAGAAGGCCTTA+GGG 0.506108 8_3:-9828091 Msa1275680:three_prime_UTR
TTGCATACATAATCCCCAAA+TGG 0.506686 8_3:+9830612 None:intergenic
TCTACATAGGGTGGAAGAGT+TGG 0.506957 8_3:-9828544 Msa1275680:three_prime_UTR
AGCTGTGAGCATAAATGTTA+TGG 0.507997 8_3:-9830677 Msa1275680:CDS
AGGCAATGATGATGGCTTTG+TGG 0.510466 8_3:-9826892 Msa1275680:three_prime_UTR
TCATCTTAATCTCAACCCTC+TGG 0.510875 8_3:+9828865 None:intergenic
TCTATCAGCTTCTCCACGCT+TGG 0.514227 8_3:+9828002 None:intergenic
TGGATAGGCCGTTTGAGGAT+CGG 0.514877 8_3:-9829253 Msa1275680:three_prime_UTR
TTTGTGGGTATCCCAATGTC+GGG 0.518939 8_3:-9829412 Msa1275680:three_prime_UTR
CATTTATGCTCACAGCTTGG+TGG 0.520226 8_3:+9830683 None:intergenic
CTGATTTGCAGCCGTTGGAT+GGG 0.521692 8_3:-9829058 Msa1275680:three_prime_UTR
CATGAAGTTGTTCCTGGAGA+AGG 0.522867 8_3:-9828099 Msa1275680:three_prime_UTR
GAGGAAGAAAATGGAGGCGC+TGG 0.523495 8_3:-9828684 Msa1275680:three_prime_UTR
AGGCTTTAGCTGAGATTAGG+AGG 0.525671 8_3:-9828437 Msa1275680:three_prime_UTR
TGTACTGTGCTTAAGAGGAT+TGG 0.532717 8_3:-9829518 Msa1275680:three_prime_UTR
GATCATTACAAGCTTGCACT+TGG 0.533978 8_3:-9829662 Msa1275680:three_prime_UTR
TTGAAGACTTCAATTGGTCA+TGG 0.534533 8_3:-9828987 Msa1275680:three_prime_UTR
AGCACCATGCATTTAACTCC+AGG 0.535101 8_3:+9826831 None:intergenic
ATATTCTGGCTGATGATGAA+TGG 0.535908 8_3:-9828632 Msa1275680:three_prime_UTR
CATCTAGGAAAGGTCGGAAG+AGG 0.537520 8_3:-9828236 Msa1275680:three_prime_UTR
GGCCTTTCCTTCTGGTCACG+TGG 0.537839 8_3:+9828789 None:intergenic
CAGTTCACAACAGAAAGAAT+GGG 0.538822 8_3:-9828324 Msa1275680:three_prime_UTR
TGTTCTTCTTGGATATATCA+GGG 0.539338 8_3:-9829175 Msa1275680:three_prime_UTR
CTGGTTCAGCAATCTCTCAC+AGG 0.539812 8_3:+9828884 None:intergenic
ATTTGTGGGTATCCCAATGT+CGG 0.540169 8_3:-9829413 Msa1275680:three_prime_UTR
TGGTCATGGAGGTGAGGGGA+CGG 0.540574 8_3:-9828973 Msa1275680:three_prime_UTR
GCTCCAAAGGAAAGACAGAC+AGG 0.543840 8_3:-9827936 Msa1275680:three_prime_UTR
CAACGGTTGGTGTTTGACGT+TGG 0.544383 8_3:+9829852 None:intergenic
TTGACCCTGACATTCTACAT+AGG 0.545444 8_3:-9828557 Msa1275680:three_prime_UTR
TGAAGGTTGCTGCTCTTGGG+AGG 0.546694 8_3:-9829544 Msa1275680:three_prime_UTR
ATTTCCTTGAAACGGTTGGT+CGG 0.548211 8_3:+9828361 None:intergenic
GACTTAGTGGTAAACGCATA+CGG 0.548539 8_3:+9829341 None:intergenic
CCCACAAATCAAAATAGTCC+TGG 0.549797 8_3:+9829427 None:intergenic
GAATCCCTAAGGCCTTCTCC+AGG 0.554177 8_3:+9828087 None:intergenic
TAACATTTATGCTCACAGCT+TGG 0.554884 8_3:+9830680 None:intergenic
TATCAAGTCATTGATACACC+TGG 0.555673 8_3:-9829281 Msa1275680:three_prime_UTR
CAAAGCAATTAAACTTGCGA+AGG 0.557324 8_3:-9828052 Msa1275680:three_prime_UTR
TCAATTGGTCATGGAGGTGA+GGG 0.557674 8_3:-9828978 Msa1275680:three_prime_UTR
TGCATAGCCTTTGTGAACAA+CGG 0.559637 8_3:+9829835 None:intergenic
AAGAGAGGAAGGGTTAAGGC+AGG 0.562461 8_3:-9828520 Msa1275680:three_prime_UTR
TTCAATTGGTCATGGAGGTG+AGG 0.562813 8_3:-9828979 Msa1275680:three_prime_UTR
TGCTCCAAATACGCCAAACT+CGG 0.563252 8_3:+9829494 None:intergenic
ATGAGTGCGTTGACTGAAGA+AGG 0.569510 8_3:-9828930 Msa1275680:three_prime_UTR
CAAATTATGAGCCTGAGAGT+TGG 0.572894 8_3:-9830592 Msa1275680:CDS
AGCTAAGCAAGCAGCCGCTG+AGG 0.574580 8_3:-9828733 Msa1275680:three_prime_UTR
TTGTTGCACACAACAATCAA+AGG 0.575746 8_3:+9829083 None:intergenic
TGACCCTGACATTCTACATA+GGG 0.576210 8_3:-9828556 Msa1275680:three_prime_UTR
CGATGAGTTTCCTCGTCTTG+GGG 0.576928 8_3:-9829732 Msa1275680:three_prime_UTR
CTTCAATTGATCCAAATACC+AGG 0.577769 8_3:-9829445 Msa1275680:three_prime_UTR
TATTCTGGAAAGCGCTCCAA+AGG 0.584874 8_3:-9827949 Msa1275680:three_prime_UTR
TCCGAAACCACGTGACCAGA+AGG 0.588470 8_3:-9828796 Msa1275680:three_prime_UTR
AACGGCCTATCCAAAATCCC+AGG 0.591191 8_3:+9829263 None:intergenic
GCTTCATGTGTTGTATAACA+AGG 0.597293 8_3:-9829684 Msa1275680:three_prime_UTR
GTTTGGTTTGTGTAGCAAAG+AGG 0.597603 8_3:-9831070 Msa1275680:CDS
TTTAGCTTCCAAAACTGCTG+GGG 0.597660 8_3:+9828755 None:intergenic
TTTGATTCAATGGCATAAGG+TGG 0.597854 8_3:+9830905 None:intergenic
TGCTCTTGCGCATTTGAGAG+CGG 0.605421 8_3:-9829204 Msa1275680:three_prime_UTR
AAGAGTTGGAAAGAGAGGAA+GGG 0.605706 8_3:-9828530 Msa1275680:three_prime_UTR
CAAGCAGAACAAGCCATTTG+GGG 0.606971 8_3:-9830625 Msa1275680:CDS
GCCGTTGGATGGGTTATCTG+AGG 0.607275 8_3:-9829048 Msa1275680:three_prime_UTR
CCCTGACATTCTACATAGGG+TGG 0.608061 8_3:-9828553 Msa1275680:three_prime_UTR
AACCACGTGACCAGAAGGAA+AGG 0.608119 8_3:-9828791 Msa1275680:three_prime_UTR
TCACCAGAAGGAAGAAACGA+TGG 0.608184 8_3:-9828207 Msa1275680:three_prime_UTR
TTGGTCAGATTAATACTGCT+AGG 0.610371 8_3:-9829643 Msa1275680:three_prime_UTR
TCCTCAGATAACCCATCCAA+CGG 0.612445 8_3:+9829047 None:intergenic
AGAAGGAAGAAACGATGGGA+TGG 0.612953 8_3:-9828202 Msa1275680:three_prime_UTR
TTAGCTTCCAAAACTGCTGG+GGG 0.613606 8_3:+9828756 None:intergenic
CACCAGAAGGAAGAAACGAT+GGG 0.615415 8_3:-9828206 Msa1275680:three_prime_UTR
TGCGTAGCAGATCTGCATCT+AGG 0.616314 8_3:-9828251 Msa1275680:three_prime_UTR
ATTGACACCGGAACAGCAAG+AGG 0.621917 8_3:-9828457 Msa1275680:three_prime_UTR
AGGTTAGGCAGCATATGGCT+AGG 0.623301 8_3:-9829472 Msa1275680:three_prime_UTR
GTGAGAGATTGCTGAACCAG+AGG 0.624481 8_3:-9828881 Msa1275680:three_prime_UTR
ATCAAGTCATTGATACACCT+GGG 0.625389 8_3:-9829280 Msa1275680:three_prime_UTR
AGCAGATCTGCATCTAGGAA+AGG 0.625927 8_3:-9828246 Msa1275680:three_prime_UTR
TCTCCAGGAACAACTTCATG+TGG 0.626458 8_3:+9828102 None:intergenic
TAGCCTTTGTGAACAACGGT+TGG 0.627876 8_3:+9829839 None:intergenic
AAAGCAATTAAACTTGCGAA+GGG 0.631135 8_3:-9828051 Msa1275680:three_prime_UTR
CCACCCTATGTAGAATGTCA+GGG 0.631460 8_3:+9828553 None:intergenic
ATCTAGGAAAGGTCGGAAGA+GGG 0.633227 8_3:-9828235 Msa1275680:three_prime_UTR
AGAAACAAGAATGCCAAGCG+TGG 0.633691 8_3:-9828015 Msa1275680:three_prime_UTR
GATCTGCATCTAGGAAAGGT+CGG 0.639204 8_3:-9828242 Msa1275680:three_prime_UTR
GTTGGATGGGTTATCTGAGG+AGG 0.639325 8_3:-9829045 Msa1275680:three_prime_UTR
CCAGGAACAACTTCATGTGG+TGG 0.642177 8_3:+9828105 None:intergenic
GGATGAATGTCCCCAAGACG+AGG 0.644458 8_3:+9829722 None:intergenic
GGTACTTGAGTAGCTTCACA+TGG 0.647989 8_3:+9830647 None:intergenic
GTATTCTAATCCAACAACAT+CGG 0.653178 8_3:-9828407 Msa1275680:three_prime_UTR
AAGAGGGAGAGATCACCAGA+AGG 0.653816 8_3:-9828219 Msa1275680:three_prime_UTR
CGTTTCAAGGAAATTCGACA+AGG 0.654192 8_3:-9828352 Msa1275680:three_prime_UTR
ACACCAACCGTTGTTCACAA+AGG 0.654882 8_3:-9829842 Msa1275680:three_prime_UTR
TTCTCCTGGAGTTAAATGCA+TGG 0.661751 8_3:-9826835 Msa1275680:three_prime_UTR
TCACAACAGAAAGAATGGGA+AGG 0.666061 8_3:-9828320 Msa1275680:three_prime_UTR
AAGACTTCAATTGGTCATGG+AGG 0.667217 8_3:-9828984 Msa1275680:three_prime_UTR
AAGTATGTCAAAGAAAAGGG+AGG 0.669578 8_3:-9830744 Msa1275680:CDS
AGATGGAACTGAATTGACAC+CGG 0.673997 8_3:-9828469 Msa1275680:three_prime_UTR
TGAGAGATTGCTGAACCAGA+GGG 0.687755 8_3:-9828880 Msa1275680:three_prime_UTR
CAATTGGTCATGGAGGTGAG+GGG 0.688118 8_3:-9828977 Msa1275680:three_prime_UTR
TGGTGGTCGAGAGACTGACC+TGG 0.706283 8_3:+9828122 None:intergenic
GATCTGGAGGAAGAAAATGG+AGG 0.758299 8_3:-9828690 Msa1275680:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAATAAATAATAATATAAA+AGG + chr8_3:9830927-9830946 None:intergenic 0.0%
!! NNNNNNNNCAATATTAATCA+TGG + chr8_3:9827164-9827183 None:intergenic 10.0%
!!! AAGAAAACTAATGAAAATTT+TGG + chr8_3:9829858-9829877 None:intergenic 15.0%
!!! TTGTTTTTCATTTTATTAAG+TGG - chr8_3:9830326-9830345 Msa1275680:intron 15.0%
!!! TGTTTTTCATTTTATTAAGT+GGG - chr8_3:9830327-9830346 Msa1275680:intron 15.0%
!!! AAAATAATTATTTTCTTTGC+AGG - chr8_3:9830788-9830807 Msa1275680:intron 15.0%
!! TTACTCTTTAAACTAAACTT+AGG - chr8_3:9827594-9827613 Msa1275680:intron 20.0%
!! TACTCTTTAAACTAAACTTA+GGG - chr8_3:9827595-9827614 Msa1275680:intron 20.0%
!! TTGTTTCATTTCTAATAACT+TGG - chr8_3:9827712-9827731 Msa1275680:intron 20.0%
!!! TGGAATTATCTTTTTTTGAT+AGG - chr8_3:9827732-9827751 Msa1275680:intron 20.0%
!!! TATGTTAAGTTGCTTAAATA+TGG - chr8_3:9828107-9828126 Msa1275680:three_prime_UTR 20.0%
!!! TTTTATCAACAAGATTACTA+GGG - chr8_3:9828319-9828338 Msa1275680:three_prime_UTR 20.0%
!!! ATACGGATTATAAGTATTTA+AGG - chr8_3:9828396-9828415 Msa1275680:three_prime_UTR 20.0%
!!! ATTTTTAAAAGTTCGTGAAA+TGG + chr8_3:9830051-9830070 None:intergenic 20.0%
!! TTTAACATAAAGAAACTAGT+AGG + chr8_3:9830207-9830226 None:intergenic 20.0%
!!! GTTTTTCATTTTATTAAGTG+GGG - chr8_3:9830328-9830347 Msa1275680:intron 20.0%
!! TCAGCAAGTATATAAAATTA+TGG + chr8_3:9830606-9830625 None:intergenic 20.0%
!!! AATAATTATTTTAGTGACAC+TGG + chr8_3:9830780-9830799 None:intergenic 20.0%
!!! ATGTTTCTTTAGTTCAATTT+TGG - chr8_3:9830946-9830965 Msa1275680:intron 20.0%
!!! TTTTTTGATTCAATGGCATA+AGG + chr8_3:9826801-9826820 None:intergenic 25.0%
! TTATGCCATTGAATCAAAAA+AGG - chr8_3:9826800-9826819 Msa1275680:three_prime_UTR 25.0%
!!! ACATACCTTTTTTGATTCAA+TGG + chr8_3:9826808-9826827 None:intergenic 25.0%
! CACTATAAAACAACAAAGAA+TGG + chr8_3:9826867-9826886 None:intergenic 25.0%
!! TATGTTTCTGTTACAGTTAA+AGG - chr8_3:9826917-9826936 Msa1275680:intron 25.0%
!! ATGTTTCTGTTACAGTTAAA+GGG - chr8_3:9826918-9826937 Msa1275680:intron 25.0%
!! TTACAGTTAAAGGGTATAAT+GGG - chr8_3:9826927-9826946 Msa1275680:intron 25.0%
!! AGAAAGTATGTCAAAGAAAA+GGG - chr8_3:9826953-9826972 Msa1275680:intron 25.0%
! ATAGAGAAGTGAGTAAAATA+GGG - chr8_3:9826988-9827007 Msa1275680:intron 25.0%
!!! CAAAATGGATTATTTCGATT+TGG + chr8_3:9827284-9827303 None:intergenic 25.0%
! ATTGGAAAGAATGAAAGAAA+AGG + chr8_3:9827541-9827560 None:intergenic 25.0%
! TTATAGTTATGTTTGTGTGT+GGG - chr8_3:9827662-9827681 Msa1275680:intron 25.0%
!!! AGGTTGATACAAAACAAAAA+TGG - chr8_3:9827752-9827771 Msa1275680:intron 25.0%
!!! CTTTTCATGAAAATTAGTCT+GGG + chr8_3:9827934-9827953 None:intergenic 25.0%
! AAGCAACTTAACATAATCTT+TGG + chr8_3:9828102-9828121 None:intergenic 25.0%
!! CTTTTATCAACAAGATTACT+AGG - chr8_3:9828318-9828337 Msa1275680:three_prime_UTR 25.0%
! ATAATGCTTTCTCAAATTCA+TGG + chr8_3:9829050-9829069 None:intergenic 25.0%
!!! TTTGAGAAAGCATTATATTC+TGG - chr8_3:9829054-9829073 Msa1275680:three_prime_UTR 25.0%
! TCTCAACCATGAATATTATA+TGG - chr8_3:9829938-9829957 Msa1275680:CDS 25.0%
! CAACTACCATATAATATTCA+TGG + chr8_3:9829947-9829966 None:intergenic 25.0%
! TGAATATTATATGGTAGTTG+TGG - chr8_3:9829947-9829966 Msa1275680:CDS 25.0%
!! GCAACAATTGATTTACAATT+GGG + chr8_3:9829990-9830009 None:intergenic 25.0%
!! AGCAACAATTGATTTACAAT+TGG + chr8_3:9829991-9830010 None:intergenic 25.0%
! AGATGTCAAATGTAATTATC+AGG + chr8_3:9830109-9830128 None:intergenic 25.0%
!! AAAATGAAAAACAACTTGCT+TGG + chr8_3:9830320-9830339 None:intergenic 25.0%
! AAAATCAGATATTCATTCAG+TGG + chr8_3:9830559-9830578 None:intergenic 25.0%
!!! GAATATCTGATTTTGTTTCT+TGG - chr8_3:9830565-9830584 Msa1275680:intron 25.0%
! TTAGATTGGAATTTAGAGAA+GGG + chr8_3:9830689-9830708 None:intergenic 25.0%
! TCATATTATTTATGTTCTCC+TGG - chr8_3:9830851-9830870 Msa1275680:intron 25.0%
AACTCTTCAAATAGTGAGTT+TGG - chr8_3:9826613-9826632 Msa1275680:three_prime_UTR 30.0%
! ATACCATGAGTTGAAAGAAA+AGG + chr8_3:9826656-9826675 None:intergenic 30.0%
! GTAAGTTGAAGACTTGAAAA+TGG + chr8_3:9826696-9826715 None:intergenic 30.0%
! GTTACAGTTAAAGGGTATAA+TGG - chr8_3:9826926-9826945 Msa1275680:intron 30.0%
! CAGAAAGTATGTCAAAGAAA+AGG - chr8_3:9826952-9826971 Msa1275680:intron 30.0%
GATAGAGAAGTGAGTAAAAT+AGG - chr8_3:9826987-9827006 Msa1275680:intron 30.0%
! AATCATGGACTATAGAATGA+AGG + chr8_3:9827149-9827168 None:intergenic 30.0%
AAAGAAAAGGAAAACCTGAA+TGG + chr8_3:9827528-9827547 None:intergenic 30.0%
! ATCTAATCTAAGATCCAAAC+AGG + chr8_3:9827621-9827640 None:intergenic 30.0%
GTTATAGTTATGTTTGTGTG+TGG - chr8_3:9827661-9827680 Msa1275680:intron 30.0%
! TCAACGAAATCTTTTCCATT+TGG + chr8_3:9827810-9827829 None:intergenic 30.0%
! GCTTTTCATGAAAATTAGTC+TGG + chr8_3:9827935-9827954 None:intergenic 30.0%
AATACTGCTAGGAATCTTAT+TGG - chr8_3:9828068-9828087 Msa1275680:three_prime_UTR 30.0%
ATCAAAATAGTCCTGGTATT+TGG + chr8_3:9828269-9828288 None:intergenic 30.0%
ATAATATTCCGATCCTCAAA+CGG + chr8_3:9828458-9828477 None:intergenic 30.0%
TTGTTCTTCTTGGATATATC+AGG - chr8_3:9828524-9828543 Msa1275680:three_prime_UTR 30.0%
TGTTCTTCTTGGATATATCA+GGG - chr8_3:9828525-9828544 Msa1275680:three_prime_UTR 30.0%
! AGATAATCTGCCAGAAATTT+TGG - chr8_3:9829096-9829115 Msa1275680:three_prime_UTR 30.0%
!!! GATGATGATTTTGAGATAGA+TGG - chr8_3:9829214-9829233 Msa1275680:three_prime_UTR 30.0%
GTATTCTAATCCAACAACAT+CGG - chr8_3:9829293-9829312 Msa1275680:three_prime_UTR 30.0%
! TCTTTTTAATCCGATGTTGT+TGG + chr8_3:9829306-9829325 None:intergenic 30.0%
ATTCTGTTAATAGCCATAGA+AGG + chr8_3:9829430-9829449 None:intergenic 30.0%
AAAGCAATTAAACTTGCGAA+GGG - chr8_3:9829649-9829668 Msa1275680:three_prime_UTR 30.0%
! AATACAAGTGCTTTGGTTTA+AGG + chr8_3:9829735-9829754 None:intergenic 30.0%
! CACATTTTCGTTATGTTTTG+TGG - chr8_3:9829887-9829906 Msa1275680:exon 30.0%
TAGTTGTGGCAAAGAATAAT+CGG - chr8_3:9829961-9829980 Msa1275680:intron 30.0%
TCTCAACCTTGAATATTACA+AGG - chr8_3:9830126-9830145 Msa1275680:intron 30.0%
TTTCCATCTCACTGTTAAAA+TGG - chr8_3:9830267-9830286 Msa1275680:intron 30.0%
!! AATCCATTTTAACAGTGAGA+TGG + chr8_3:9830273-9830292 None:intergenic 30.0%
!! TCACTGTTAAAATGGATTGA+AGG - chr8_3:9830275-9830294 Msa1275680:intron 30.0%
TAGAAAACTCATGACTAGAA+TGG + chr8_3:9830397-9830416 None:intergenic 30.0%
CATGCATGATTCAAGAAAAA+TGG + chr8_3:9830447-9830466 None:intergenic 30.0%
AAATGATATCATCAAGACCA+AGG + chr8_3:9830514-9830533 None:intergenic 30.0%
ATTCAGTGGTTTACAAAAAC+AGG + chr8_3:9830545-9830564 None:intergenic 30.0%
TTTGAAAGACAGAGAGAAAT+GGG + chr8_3:9830631-9830650 None:intergenic 30.0%
TAGATTGGAATTTAGAGAAG+GGG + chr8_3:9830688-9830707 None:intergenic 30.0%
CTTAGATTGGAATTTAGAGA+AGG + chr8_3:9830690-9830709 None:intergenic 30.0%
!!! AATTATTTTAGTGACACTGG+TGG + chr8_3:9830777-9830796 None:intergenic 30.0%
ACTCATGGTATTTCACATTC+AGG - chr8_3:9826665-9826684 Msa1275680:three_prime_UTR 35.0%
TTTGATTCAATGGCATAAGG+TGG + chr8_3:9826798-9826817 None:intergenic 35.0%
AGTCATGTACGTTAGGATTT+AGG + chr8_3:9826831-9826850 None:intergenic 35.0%
CTCTTATAGTCATGTACGTT+AGG + chr8_3:9826838-9826857 None:intergenic 35.0%
AAGTATGTCAAAGAAAAGGG+AGG - chr8_3:9826956-9826975 Msa1275680:intron 35.0%
TAACATTTATGCTCACAGCT+TGG + chr8_3:9827023-9827042 None:intergenic 35.0%
AGCTGTGAGCATAAATGTTA+TGG - chr8_3:9827023-9827042 Msa1275680:intron 35.0%
TTGCATACATAATCCCCAAA+TGG + chr8_3:9827091-9827110 None:intergenic 35.0%
CTAACCCAATTAGTGTAACT+GGG - chr8_3:9827336-9827355 Msa1275680:intron 35.0%
!!! TAGGGGTTTTAGAACGAATA+AGG + chr8_3:9827431-9827450 None:intergenic 35.0%
AGTAAACTACAGAGCTTAAC+CGG + chr8_3:9827579-9827598 None:intergenic 35.0%
! ATCTTTTCCATTTGGTACGA+CGG + chr8_3:9827802-9827821 None:intergenic 35.0%
! CTTTTCGCATGTAGAATTGT+CGG + chr8_3:9827902-9827921 None:intergenic 35.0%
GCTTCATGTGTTGTATAACA+AGG - chr8_3:9828016-9828035 Msa1275680:three_prime_UTR 35.0%
TTGGTCAGATTAATACTGCT+AGG - chr8_3:9828057-9828076 Msa1275680:three_prime_UTR 35.0%
CTGGTATTTGGATCAATTGA+AGG + chr8_3:9828257-9828276 None:intergenic 35.0%
CTTCAATTGATCCAAATACC+AGG - chr8_3:9828255-9828274 Msa1275680:three_prime_UTR 35.0%
!!! ACCAGGACTATTTTGATTTG+TGG - chr8_3:9828272-9828291 Msa1275680:three_prime_UTR 35.0%
!!! CCAGGACTATTTTGATTTGT+GGG - chr8_3:9828273-9828292 Msa1275680:three_prime_UTR 35.0%
TATCAAGTCATTGATACACC+TGG - chr8_3:9828419-9828438 Msa1275680:three_prime_UTR 35.0%
ATCAAGTCATTGATACACCT+GGG - chr8_3:9828420-9828439 Msa1275680:three_prime_UTR 35.0%
TTGTTGCACACAACAATCAA+AGG + chr8_3:9828620-9828639 None:intergenic 35.0%
TTGAAGACTTCAATTGGTCA+TGG - chr8_3:9828713-9828732 Msa1275680:three_prime_UTR 35.0%
! ATATTCTGGCTGATGATGAA+TGG - chr8_3:9829068-9829087 Msa1275680:three_prime_UTR 35.0%
! AATCTGCCAGAAATTTTGGA+TGG - chr8_3:9829100-9829119 Msa1275680:three_prime_UTR 35.0%
TTGTGACCATCCAAAATTTC+TGG + chr8_3:9829109-9829128 None:intergenic 35.0%
CTTGTCGAATTTCCTTGAAA+CGG + chr8_3:9829350-9829369 None:intergenic 35.0%
CAGTTCACAACAGAAAGAAT+GGG - chr8_3:9829376-9829395 Msa1275680:three_prime_UTR 35.0%
CAAAGCAATTAAACTTGCGA+AGG - chr8_3:9829648-9829667 Msa1275680:three_prime_UTR 35.0%
! AAACCAAAGCACTTGTATTC+TGG - chr8_3:9829736-9829755 Msa1275680:three_prime_UTR 35.0%
TTTCCAGAATACAAGTGCTT+TGG + chr8_3:9829742-9829761 None:intergenic 35.0%
ATTTACCATGTAGCAAGTCA+CGG - chr8_3:9829828-9829847 Msa1275680:three_prime_UTR 35.0%
CAGTCACCTTGTAATATTCA+AGG + chr8_3:9830135-9830154 None:intergenic 35.0%
TGAATATTACAAGGTGACTG+TGG - chr8_3:9830135-9830154 Msa1275680:intron 35.0%
!! AATGGATTGAAGGAAATGTG+CGG - chr8_3:9830285-9830304 Msa1275680:intron 35.0%
ATGGAAACTCAGTCAGATAT+TGG + chr8_3:9830428-9830447 None:intergenic 35.0%
!! CTGATTTTGTTTCTTGGTCA+CGG - chr8_3:9830571-9830590 Msa1275680:intron 35.0%
TTGAAAGACAGAGAGAAATG+GGG + chr8_3:9830630-9830649 None:intergenic 35.0%
GTTTGAAAGACAGAGAGAAA+TGG + chr8_3:9830632-9830651 None:intergenic 35.0%
TCTCTCTGTCTTTCAAACAA+AGG - chr8_3:9830634-9830653 Msa1275680:CDS 35.0%
AGATTGGAATTTAGAGAAGG+GGG + chr8_3:9830687-9830706 None:intergenic 35.0%
ACGAAACTCAAGACTTAGAT+TGG + chr8_3:9830703-9830722 None:intergenic 35.0%
! TGTTTCACATTTTGCAACTG+TGG - chr8_3:9831021-9831040 Msa1275680:intron 35.0%
GAACGAGCAACAAATTTAAC+AGG + chr8_3:9831092-9831111 None:intergenic 35.0%
!! GTTTGGTTTGTGTAGCAAAG+AGG - chr8_3:9826630-9826649 Msa1275680:three_prime_UTR 40.0%
! AGGCCTTTTCTTTCAACTCA+TGG - chr8_3:9826650-9826669 Msa1275680:three_prime_UTR 40.0%
! GCATAAGGTGGTGAAGATTT+TGG + chr8_3:9826786-9826805 None:intergenic 40.0%
CAAATTATGAGCCTGAGAGT+TGG - chr8_3:9827108-9827127 Msa1275680:intron 40.0%
TCTCTTAGGATGTGGCAAAA+TGG + chr8_3:9827299-9827318 None:intergenic 40.0%
CCAGTTACACTAATTGGGTT+AGG + chr8_3:9827338-9827357 None:intergenic 40.0%
CCTAACCCAATTAGTGTAAC+TGG - chr8_3:9827335-9827354 Msa1275680:intron 40.0%
AAGGTTTACGTACCAAGGAA+AGG + chr8_3:9827412-9827431 None:intergenic 40.0%
CGAATAAGGTTTACGTACCA+AGG + chr8_3:9827417-9827436 None:intergenic 40.0%
!!! TGGACTTTTTCACTGGAACT+CGG + chr8_3:9827508-9827527 None:intergenic 40.0%
TCCAGTGAAAAAGTCCATTC+AGG - chr8_3:9827511-9827530 Msa1275680:intron 40.0%
!!! ACCTGAATGGACTTTTTCAC+TGG + chr8_3:9827515-9827534 None:intergenic 40.0%
GTAAACTACAGAGCTTAACC+GGG + chr8_3:9827578-9827597 None:intergenic 40.0%
AACTAAACTTAGGGCCTGTT+TGG - chr8_3:9827604-9827623 Msa1275680:intron 40.0%
AGTTATGTTTGTGTGTGGGT+CGG - chr8_3:9827666-9827685 Msa1275680:intron 40.0%
AAGATTACCGTCGTACCAAA+TGG - chr8_3:9827792-9827811 Msa1275680:intron 40.0%
TGCATAGCCTTTGTGAACAA+CGG + chr8_3:9827868-9827887 None:intergenic 40.0%
! ACGAGGAAACTCATCGATTA+TGG + chr8_3:9827964-9827983 None:intergenic 40.0%
! GGGGACATTCATCCTTTTTA+CGG - chr8_3:9827987-9828006 Msa1275680:three_prime_UTR 40.0%
TGAAGCAGATCACCGTAAAA+AGG + chr8_3:9828002-9828021 None:intergenic 40.0%
GATCATTACAAGCTTGCACT+TGG - chr8_3:9828038-9828057 Msa1275680:three_prime_UTR 40.0%
TGTACTGTGCTTAAGAGGAT+TGG - chr8_3:9828182-9828201 Msa1275680:three_prime_UTR 40.0%
CCCACAAATCAAAATAGTCC+TGG + chr8_3:9828276-9828295 None:intergenic 40.0%
ATTTGTGGGTATCCCAATGT+CGG - chr8_3:9828287-9828306 Msa1275680:three_prime_UTR 40.0%
AAAGAACTCTTCCCGACATT+GGG + chr8_3:9828302-9828321 None:intergenic 40.0%
AAAAGAACTCTTCCCGACAT+TGG + chr8_3:9828303-9828322 None:intergenic 40.0%
GACTTAGTGGTAAACGCATA+CGG + chr8_3:9828362-9828381 None:intergenic 40.0%
TACCACTAAGTCGTTGTTTG+TGG - chr8_3:9828370-9828389 Msa1275680:three_prime_UTR 40.0%
ACCACTAAGTCGTTGTTTGT+GGG - chr8_3:9828371-9828390 Msa1275680:three_prime_UTR 40.0%
! CATTGATACACCTGGGATTT+TGG - chr8_3:9828427-9828446 Msa1275680:three_prime_UTR 40.0%
! ATACACCTGGGATTTTGGAT+AGG - chr8_3:9828432-9828451 Msa1275680:three_prime_UTR 40.0%
AGCGGCAATATTGTTCTTCT+TGG - chr8_3:9828514-9828533 Msa1275680:three_prime_UTR 40.0%
TTGGATATATCAGGGTCTTG+TGG - chr8_3:9828533-9828552 Msa1275680:three_prime_UTR 40.0%
! TGGATATATCAGGGTCTTGT+GGG - chr8_3:9828534-9828553 Msa1275680:three_prime_UTR 40.0%
ATCTGAGGAGGATATGAAGT+TGG - chr8_3:9828667-9828686 Msa1275680:three_prime_UTR 40.0%
!! GAAGCGTTGAAGACTTCAAT+TGG - chr8_3:9828707-9828726 Msa1275680:three_prime_UTR 40.0%
AAGACTTCAATTGGTCATGG+AGG - chr8_3:9828716-9828735 Msa1275680:three_prime_UTR 40.0%
TCATCTTAATCTCAACCCTC+TGG + chr8_3:9828838-9828857 None:intergenic 40.0%
AAATCAACGACTGTCTGAAC+AGG - chr8_3:9828867-9828886 Msa1275680:three_prime_UTR 40.0%
! TTTAGCTTCCAAAACTGCTG+GGG + chr8_3:9828948-9828967 None:intergenic 40.0%
! CTTTAGCTTCCAAAACTGCT+GGG + chr8_3:9828949-9828968 None:intergenic 40.0%
! AGTTTTTCTCTTCTCCTCAG+CGG + chr8_3:9828984-9829003 None:intergenic 40.0%
GGAGAAGAGAAAAACTGAGA+AGG - chr8_3:9828988-9829007 Msa1275680:three_prime_UTR 40.0%
GAGAAAAACTGAGAAGGATC+TGG - chr8_3:9828994-9829013 Msa1275680:three_prime_UTR 40.0%
AAAAACTGAGAAGGATCTGG+AGG - chr8_3:9828997-9829016 Msa1275680:three_prime_UTR 40.0%
AAGGATCTGGAGGAAGAAAA+TGG - chr8_3:9829007-9829026 Msa1275680:three_prime_UTR 40.0%
TTGACCCTGACATTCTACAT+AGG - chr8_3:9829143-9829162 Msa1275680:three_prime_UTR 40.0%
TGACCCTGACATTCTACATA+GGG - chr8_3:9829144-9829163 Msa1275680:three_prime_UTR 40.0%
AAGAGTTGGAAAGAGAGGAA+GGG - chr8_3:9829170-9829189 Msa1275680:three_prime_UTR 40.0%
AGATGGAACTGAATTGACAC+CGG - chr8_3:9829231-9829250 Msa1275680:three_prime_UTR 40.0%
! AAGAGGCTTTAGCTGAGATT+AGG - chr8_3:9829260-9829279 Msa1275680:three_prime_UTR 40.0%
ATTTCCTTGAAACGGTTGGT+CGG + chr8_3:9829342-9829361 None:intergenic 40.0%
TCGAATTTCCTTGAAACGGT+TGG + chr8_3:9829346-9829365 None:intergenic 40.0%
CGTTTCAAGGAAATTCGACA+AGG - chr8_3:9829348-9829367 Msa1275680:three_prime_UTR 40.0%
GCAGTTCACAACAGAAAGAA+TGG - chr8_3:9829375-9829394 Msa1275680:three_prime_UTR 40.0%
TCACAACAGAAAGAATGGGA+AGG - chr8_3:9829380-9829399 Msa1275680:three_prime_UTR 40.0%
! TCTTTTGAGCAGAATCCCTA+AGG + chr8_3:9829627-9829646 None:intergenic 40.0%
! GGCATTCTTGTTTCTCTTCT+TGG + chr8_3:9829680-9829699 None:intergenic 40.0%
TGTTTCTTGGTCACGGTTTA+AGG - chr8_3:9830578-9830597 Msa1275680:intron 40.0%
AATTTAGAGAAGGGGGGAAA+GGG + chr8_3:9830680-9830699 None:intergenic 40.0%
GATTGGAATTTAGAGAAGGG+GGG + chr8_3:9830686-9830705 None:intergenic 40.0%
TTCTTTGCAGGCAATGATGA+TGG - chr8_3:9830800-9830819 Msa1275680:intron 40.0%
TTCTCCTGGAGTTAAATGCA+TGG - chr8_3:9830865-9830884 Msa1275680:intron 40.0%
! CATTTTGCAACTGTGGTTGT+TGG - chr8_3:9831028-9831047 Msa1275680:intron 40.0%
CATTTATGCTCACAGCTTGG+TGG + chr8_3:9827020-9827039 None:intergenic 45.0%
GGTACTTGAGTAGCTTCACA+TGG + chr8_3:9827056-9827075 None:intergenic 45.0%
ACCAAGCAGAACAAGCCATT+TGG - chr8_3:9827073-9827092 Msa1275680:intron 45.0%
CCAAGCAGAACAAGCCATTT+GGG - chr8_3:9827074-9827093 Msa1275680:intron 45.0%
CAAGCAGAACAAGCCATTTG+GGG - chr8_3:9827075-9827094 Msa1275680:intron 45.0%
CACTTGCATTTCCAACTCTC+AGG + chr8_3:9827122-9827141 None:intergenic 45.0%
GAGAGTTGGAAATGCAAGTG+TGG - chr8_3:9827122-9827141 Msa1275680:intron 45.0%
TTTGCCACATCCTAAGAGAG+AGG - chr8_3:9827300-9827319 Msa1275680:intron 45.0%
GCTATTTGCACCTCTCTCTT+AGG + chr8_3:9827313-9827332 None:intergenic 45.0%
CTCTTGGGTTAAATTCGACC+CGG + chr8_3:9827371-9827390 None:intergenic 45.0%
CAAGGAAAGGAATGAGGGAA+GGG + chr8_3:9827399-9827418 None:intergenic 45.0%
CGTACCAAGGAAAGGAATGA+GGG + chr8_3:9827404-9827423 None:intergenic 45.0%
ACGTACCAAGGAAAGGAATG+AGG + chr8_3:9827405-9827424 None:intergenic 45.0%
TGATACTCCGACGGTGTAAA+GGG + chr8_3:9827481-9827500 None:intergenic 45.0%
!! CTTTTTCACTGGAACTCGGT+GGG + chr8_3:9827504-9827523 None:intergenic 45.0%
!!! ACTTTTTCACTGGAACTCGG+TGG + chr8_3:9827505-9827524 None:intergenic 45.0%
! CAATTTTCGTTCCCCTTTCC+CGG - chr8_3:9827557-9827576 Msa1275680:intron 45.0%
TACAGAGCTTAACCGGGAAA+GGG + chr8_3:9827572-9827591 None:intergenic 45.0%
! AACGGTTGGTGTTTGACGTT+GGG + chr8_3:9827850-9827869 None:intergenic 45.0%
ACACCAACCGTTGTTCACAA+AGG - chr8_3:9827858-9827877 Msa1275680:intron 45.0%
TAGCCTTTGTGAACAACGGT+TGG + chr8_3:9827864-9827883 None:intergenic 45.0%
ATCGATGAGTTTCCTCGTCT+TGG - chr8_3:9827966-9827985 Msa1275680:three_prime_UTR 45.0%
TCGATGAGTTTCCTCGTCTT+GGG - chr8_3:9827967-9827986 Msa1275680:three_prime_UTR 45.0%
GTATCGCTGTAAGTGCTTGA+AGG - chr8_3:9828139-9828158 Msa1275680:three_prime_UTR 45.0%
GGATGTGTACTGTGCTTAAG+AGG - chr8_3:9828177-9828196 Msa1275680:three_prime_UTR 45.0%
TAAGAGGATTGGACCGAGTT+TGG - chr8_3:9828193-9828212 Msa1275680:three_prime_UTR 45.0%
TGCTCCAAATACGCCAAACT+CGG + chr8_3:9828209-9828228 None:intergenic 45.0%
TTTGTGGGTATCCCAATGTC+GGG - chr8_3:9828288-9828307 Msa1275680:three_prime_UTR 45.0%
ACCCACAAACAACGACTTAG+TGG + chr8_3:9828375-9828394 None:intergenic 45.0%
GTCGTTGTTTGTGGGTCATA+CGG - chr8_3:9828379-9828398 Msa1275680:three_prime_UTR 45.0%
! GATTTTGGATAGGCCGTTTG+AGG - chr8_3:9828442-9828461 Msa1275680:three_prime_UTR 45.0%
TGGGTATACTATTGCTCAGC+AGG - chr8_3:9828553-9828572 Msa1275680:three_prime_UTR 45.0%
TCCTCAGATAACCCATCCAA+CGG + chr8_3:9828656-9828675 None:intergenic 45.0%
TTCAATTGGTCATGGAGGTG+AGG - chr8_3:9828721-9828740 Msa1275680:three_prime_UTR 45.0%
TCAATTGGTCATGGAGGTGA+GGG - chr8_3:9828722-9828741 Msa1275680:three_prime_UTR 45.0%
!! ATGAGTGCGTTGACTGAAGA+AGG - chr8_3:9828770-9828789 Msa1275680:three_prime_UTR 45.0%
TGAGAGATTGCTGAACCAGA+GGG - chr8_3:9828820-9828839 Msa1275680:three_prime_UTR 45.0%
AAAACTGCTGGGGGAATACA+CGG + chr8_3:9828938-9828957 None:intergenic 45.0%
TTAGCTTCCAAAACTGCTGG+GGG + chr8_3:9828947-9828966 None:intergenic 45.0%
! GCTTTAGCTTCCAAAACTGC+TGG + chr8_3:9828950-9828969 None:intergenic 45.0%
GATCTGGAGGAAGAAAATGG+AGG - chr8_3:9829010-9829029 Msa1275680:three_prime_UTR 45.0%
CCACCCTATGTAGAATGTCA+GGG + chr8_3:9829150-9829169 None:intergenic 45.0%
TCCACCCTATGTAGAATGTC+AGG + chr8_3:9829151-9829170 None:intergenic 45.0%
TCTACATAGGGTGGAAGAGT+TGG - chr8_3:9829156-9829175 Msa1275680:three_prime_UTR 45.0%
GAAGAGTTGGAAAGAGAGGA+AGG - chr8_3:9829169-9829188 Msa1275680:three_prime_UTR 45.0%
TGGAAAGAGAGGAAGGGTTA+AGG - chr8_3:9829176-9829195 Msa1275680:three_prime_UTR 45.0%
! AGGCTTTAGCTGAGATTAGG+AGG - chr8_3:9829263-9829282 Msa1275680:three_prime_UTR 45.0%
CAAGGAAATTCGACAAGGAC+AGG - chr8_3:9829353-9829372 Msa1275680:three_prime_UTR 45.0%
TCTTGGGCTTGATCCTTCTA+TGG - chr8_3:9829414-9829433 Msa1275680:three_prime_UTR 45.0%
AGCAGATCTGCATCTAGGAA+AGG - chr8_3:9829454-9829473 Msa1275680:three_prime_UTR 45.0%
GATCTGCATCTAGGAAAGGT+CGG - chr8_3:9829458-9829477 Msa1275680:three_prime_UTR 45.0%
ATCTAGGAAAGGTCGGAAGA+GGG - chr8_3:9829465-9829484 Msa1275680:three_prime_UTR 45.0%
TCACCAGAAGGAAGAAACGA+TGG - chr8_3:9829493-9829512 Msa1275680:three_prime_UTR 45.0%
CACCAGAAGGAAGAAACGAT+GGG - chr8_3:9829494-9829513 Msa1275680:three_prime_UTR 45.0%
ATCCCATCGTTTCTTCCTTC+TGG + chr8_3:9829499-9829518 None:intergenic 45.0%
AGAAGGAAGAAACGATGGGA+TGG - chr8_3:9829498-9829517 Msa1275680:three_prime_UTR 45.0%
TCTCCAGGAACAACTTCATG+TGG + chr8_3:9829601-9829620 None:intergenic 45.0%
CATGAAGTTGTTCCTGGAGA+AGG - chr8_3:9829601-9829620 Msa1275680:three_prime_UTR 45.0%
AGAAACAAGAATGCCAAGCG+TGG - chr8_3:9829685-9829704 Msa1275680:three_prime_UTR 45.0%
!! TATTCTGGAAAGCGCTCCAA+AGG - chr8_3:9829751-9829770 Msa1275680:three_prime_UTR 45.0%
AGACAGACAGGCGCTAAAAT+AGG - chr8_3:9829776-9829795 Msa1275680:three_prime_UTR 45.0%
AGGTGACTGTGGAGAAGAAT+TGG - chr8_3:9830146-9830165 Msa1275680:intron 45.0%
GAATTTAGAGAAGGGGGGAA+AGG + chr8_3:9830681-9830700 None:intergenic 45.0%
!! AGGCAATGATGATGGCTTTG+TGG - chr8_3:9830808-9830827 Msa1275680:intron 45.0%
!! GGCAATGATGATGGCTTTGT+GGG - chr8_3:9830809-9830828 Msa1275680:intron 45.0%
AGCACCATGCATTTAACTCC+AGG + chr8_3:9830872-9830891 None:intergenic 45.0%
!! CCCAAATGGCTTGTTCTGCT+TGG + chr8_3:9827077-9827096 None:intergenic 50.0%
TGCACCTCTCTCTTAGGATG+TGG + chr8_3:9827307-9827326 None:intergenic 50.0%
CCGGCCCAGTTACACTAATT+GGG + chr8_3:9827343-9827362 None:intergenic 50.0%
CCCAATTAGTGTAACTGGGC+CGG - chr8_3:9827340-9827359 Msa1275680:intron 50.0%
TAAATTCGACCCGGTATGGC+CGG + chr8_3:9827362-9827381 None:intergenic 50.0%
GGGTTAAATTCGACCCGGTA+TGG + chr8_3:9827366-9827385 None:intergenic 50.0%
GAGGGAAGGGAAAGACTCTT+GGG + chr8_3:9827386-9827405 None:intergenic 50.0%
TGAGGGAAGGGAAAGACTCT+TGG + chr8_3:9827387-9827406 None:intergenic 50.0%
CCAAGGAAAGGAATGAGGGA+AGG + chr8_3:9827400-9827419 None:intergenic 50.0%
CCTTCCCTCATTCCTTTCCT+TGG - chr8_3:9827397-9827416 Msa1275680:intron 50.0%
GATACTCCGACGGTGTAAAG+GGG + chr8_3:9827480-9827499 None:intergenic 50.0%
GTGATACTCCGACGGTGTAA+AGG + chr8_3:9827482-9827501 None:intergenic 50.0%
CGGGAAAGGGGAACGAAAAT+TGG + chr8_3:9827559-9827578 None:intergenic 50.0%
ACAGAGCTTAACCGGGAAAG+GGG + chr8_3:9827571-9827590 None:intergenic 50.0%
CTACAGAGCTTAACCGGGAA+AGG + chr8_3:9827573-9827592 None:intergenic 50.0%
TGTGGGTCGGTCTATAGCTA+CGG - chr8_3:9827679-9827698 Msa1275680:intron 50.0%
! CAACGGTTGGTGTTTGACGT+TGG + chr8_3:9827851-9827870 None:intergenic 50.0%
CGATGAGTTTCCTCGTCTTG+GGG - chr8_3:9827968-9827987 Msa1275680:three_prime_UTR 50.0%
TGCTTGAAGGTTGCTGCTCT+TGG - chr8_3:9828152-9828171 Msa1275680:three_prime_UTR 50.0%
GCTTGAAGGTTGCTGCTCTT+GGG - chr8_3:9828153-9828172 Msa1275680:three_prime_UTR 50.0%
TGGACCGAGTTTGGCGTATT+TGG - chr8_3:9828202-9828221 Msa1275680:three_prime_UTR 50.0%
! GAGTTTGGCGTATTTGGAGC+AGG - chr8_3:9828208-9828227 Msa1275680:three_prime_UTR 50.0%
! TGGCGTATTTGGAGCAGGTT+AGG - chr8_3:9828213-9828232 Msa1275680:three_prime_UTR 50.0%
AGGTTAGGCAGCATATGGCT+AGG - chr8_3:9828228-9828247 Msa1275680:three_prime_UTR 50.0%
AACGGCCTATCCAAAATCCC+AGG + chr8_3:9828440-9828459 None:intergenic 50.0%
TGGATAGGCCGTTTGAGGAT+CGG - chr8_3:9828447-9828466 Msa1275680:three_prime_UTR 50.0%
TGCTCTTGCGCATTTGAGAG+CGG - chr8_3:9828496-9828515 Msa1275680:three_prime_UTR 50.0%
!! CAAGACTGATTTGCAGCCGT+TGG - chr8_3:9828637-9828656 Msa1275680:three_prime_UTR 50.0%
!! ACTGATTTGCAGCCGTTGGA+TGG - chr8_3:9828641-9828660 Msa1275680:three_prime_UTR 50.0%
! CTGATTTGCAGCCGTTGGAT+GGG - chr8_3:9828642-9828661 Msa1275680:three_prime_UTR 50.0%
!! GTTGGATGGGTTATCTGAGG+AGG - chr8_3:9828655-9828674 Msa1275680:three_prime_UTR 50.0%
CAATTGGTCATGGAGGTGAG+GGG - chr8_3:9828723-9828742 Msa1275680:three_prime_UTR 50.0%
CTGGTTCAGCAATCTCTCAC+AGG + chr8_3:9828819-9828838 None:intergenic 50.0%
GTGAGAGATTGCTGAACCAG+AGG - chr8_3:9828819-9828838 Msa1275680:three_prime_UTR 50.0%
TCCTTCTGGTCACGTGGTTT+CGG + chr8_3:9828908-9828927 None:intergenic 50.0%
AACCACGTGACCAGAAGGAA+AGG - chr8_3:9828909-9828928 Msa1275680:three_prime_UTR 50.0%
! GTGTATTCCCCCAGCAGTTT+TGG - chr8_3:9828937-9828956 Msa1275680:three_prime_UTR 50.0%
CCCTGACATTCTACATAGGG+TGG - chr8_3:9829147-9829166 Msa1275680:three_prime_UTR 50.0%
GGTGGAAGAGTTGGAAAGAG+AGG - chr8_3:9829165-9829184 Msa1275680:three_prime_UTR 50.0%
AAGAGAGGAAGGGTTAAGGC+AGG - chr8_3:9829180-9829199 Msa1275680:three_prime_UTR 50.0%
ATTGACACCGGAACAGCAAG+AGG - chr8_3:9829243-9829262 Msa1275680:three_prime_UTR 50.0%
!! GCTAAAGCCTCTTGCTGTTC+CGG + chr8_3:9829253-9829272 None:intergenic 50.0%
TGCGTAGCAGATCTGCATCT+AGG - chr8_3:9829449-9829468 Msa1275680:three_prime_UTR 50.0%
CATCTAGGAAAGGTCGGAAG+AGG - chr8_3:9829464-9829483 Msa1275680:three_prime_UTR 50.0%
AAGAGGGAGAGATCACCAGA+AGG - chr8_3:9829481-9829500 Msa1275680:three_prime_UTR 50.0%
!! CTGAGACGCTGTTTCTTGCT+AGG + chr8_3:9829541-9829560 None:intergenic 50.0%
GTAGATCACTGTCTCGTTCC+AGG - chr8_3:9829560-9829579 Msa1275680:three_prime_UTR 50.0%
CCAGGAACAACTTCATGTGG+TGG + chr8_3:9829598-9829617 None:intergenic 50.0%
CCACCACATGAAGTTGTTCC+TGG - chr8_3:9829595-9829614 Msa1275680:three_prime_UTR 50.0%
TTGTTCCTGGAGAAGGCCTT+AGG - chr8_3:9829608-9829627 Msa1275680:three_prime_UTR 50.0%
TGTTCCTGGAGAAGGCCTTA+GGG - chr8_3:9829609-9829628 Msa1275680:three_prime_UTR 50.0%
TCTATCAGCTTCTCCACGCT+TGG + chr8_3:9829701-9829720 None:intergenic 50.0%
GCTCCAAAGGAAAGACAGAC+AGG - chr8_3:9829764-9829783 Msa1275680:three_prime_UTR 50.0%
AAGGCTTGCATAGTGCTGCA+GGG + chr8_3:9830495-9830514 None:intergenic 50.0%
GCCGGCCCAGTTACACTAAT+TGG + chr8_3:9827344-9827363 None:intergenic 55.0%
! AGGCTGGCTGCACTAGTTAG+GGG + chr8_3:9827448-9827467 None:intergenic 55.0%
! GAGGCTGGCTGCACTAGTTA+GGG + chr8_3:9827449-9827468 None:intergenic 55.0%
! AGAGGCTGGCTGCACTAGTT+AGG + chr8_3:9827450-9827469 None:intergenic 55.0%
GTGGGTCGGTCTATAGCTAC+GGG - chr8_3:9827680-9827699 Msa1275680:intron 55.0%
GGATGAATGTCCCCAAGACG+AGG + chr8_3:9827981-9828000 None:intergenic 55.0%
TGAAGGTTGCTGCTCTTGGG+AGG - chr8_3:9828156-9828175 Msa1275680:three_prime_UTR 55.0%
GGAGCAGGTTAGGCAGCATA+TGG - chr8_3:9828223-9828242 Msa1275680:three_prime_UTR 55.0%
!! GCCGTTGGATGGGTTATCTG+AGG - chr8_3:9828652-9828671 Msa1275680:three_prime_UTR 55.0%
TCCGAAACCACGTGACCAGA+AGG - chr8_3:9828904-9828923 Msa1275680:three_prime_UTR 55.0%
TACACGGAGGCCTTTCCTTC+TGG + chr8_3:9828922-9828941 None:intergenic 55.0%
! GAGGAAGAAAATGGAGGCGC+TGG - chr8_3:9829016-9829035 Msa1275680:three_prime_UTR 55.0%
AGAGCCGACCAACCGTTTCA+AGG - chr8_3:9829335-9829354 Msa1275680:three_prime_UTR 55.0%
GAAGGCAGCTGTCGTCTCTT+GGG - chr8_3:9829398-9829417 Msa1275680:three_prime_UTR 55.0%
GAATCCCTAAGGCCTTCTCC+AGG + chr8_3:9829616-9829635 None:intergenic 55.0%
GCGCCTGTCTGTCTTTCCTT+TGG + chr8_3:9829770-9829789 None:intergenic 55.0%
!! GAGTGCCGTGACTTGCTACA+TGG + chr8_3:9829836-9829855 None:intergenic 55.0%
AGGCTTGCATAGTGCTGCAG+GGG + chr8_3:9830494-9830513 None:intergenic 55.0%
CAAGGCTTGCATAGTGCTGC+AGG + chr8_3:9830496-9830515 None:intergenic 55.0%
CTGCAGCACTATGCAAGCCT+TGG - chr8_3:9830494-9830513 Msa1275680:intron 55.0%
GAGAAGGGGGGAAAGGGTTA+GGG + chr8_3:9830674-9830693 None:intergenic 55.0%
AGAGAAGGGGGGAAAGGGTT+AGG + chr8_3:9830675-9830694 None:intergenic 55.0%
TGTAACTGGGCCGGCCATAC+CGG - chr8_3:9827349-9827368 Msa1275680:intron 60.0%
GTGTAAAGGGGCAGCTGCAG+AGG + chr8_3:9827468-9827487 None:intergenic 60.0%
CAGCTGCCCCTTTACACCGT+CGG - chr8_3:9827471-9827490 Msa1275680:intron 60.0%
CTCGGTGGGTGATACTCCGA+CGG + chr8_3:9827490-9827509 None:intergenic 60.0%
TGGTCATGGAGGTGAGGGGA+CGG - chr8_3:9828727-9828746 Msa1275680:three_prime_UTR 60.0%
GGCCTTTCCTTCTGGTCACG+TGG + chr8_3:9828914-9828933 None:intergenic 60.0%
ACTGCTGGGGGAATACACGG+AGG + chr8_3:9828935-9828954 None:intergenic 60.0%
AGCTAAGCAAGCAGCCGCTG+AGG - chr8_3:9828967-9828986 Msa1275680:three_prime_UTR 60.0%
GGAAGGCAGCTGTCGTCTCT+TGG - chr8_3:9829397-9829416 Msa1275680:three_prime_UTR 60.0%
TGGTGGTCGAGAGACTGACC+TGG + chr8_3:9829581-9829600 None:intergenic 60.0%
GTAACTGGGCCGGCCATACC+GGG - chr8_3:9827350-9827369 Msa1275680:intron 65.0%
AAAGGGGCAGCTGCAGAGGC+TGG + chr8_3:9827464-9827483 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 9826584 9831138 9826584 ID=Msa1275680;Name=Msa1275680
chr8_3 mRNA 9826584 9831138 9826584 ID=Msa1275680-mRNA-1;Parent=Msa1275680;Name=Msa1275680-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.25|0.4|1|0.5|0.4|5|2297|145
chr8_3 exon 9826584 9826912 9826584 ID=Msa1275680-mRNA-1:exon:4089;Parent=Msa1275680-mRNA-1
chr8_3 exon 9827925 9829968 9827925 ID=Msa1275680-mRNA-1:exon:4088;Parent=Msa1275680-mRNA-1
chr8_3 exon 9830584 9830789 9830584 ID=Msa1275680-mRNA-1:exon:4087;Parent=Msa1275680-mRNA-1
chr8_3 exon 9830901 9830953 9830901 ID=Msa1275680-mRNA-1:exon:4086;Parent=Msa1275680-mRNA-1
chr8_3 exon 9831036 9831138 9831036 ID=Msa1275680-mRNA-1:exon:4085;Parent=Msa1275680-mRNA-1
chr8_3 CDS 9831036 9831138 9831036 ID=Msa1275680-mRNA-1:cds;Parent=Msa1275680-mRNA-1
chr8_3 CDS 9830901 9830953 9830901 ID=Msa1275680-mRNA-1:cds;Parent=Msa1275680-mRNA-1
chr8_3 CDS 9830584 9830789 9830584 ID=Msa1275680-mRNA-1:cds;Parent=Msa1275680-mRNA-1
chr8_3 CDS 9829893 9829968 9829893 ID=Msa1275680-mRNA-1:cds;Parent=Msa1275680-mRNA-1
chr8_3 three_prime_UTR 9827925 9829892 9827925 ID=Msa1275680-mRNA-1:three_prime_utr;Parent=Msa1275680-mRNA-1
chr8_3 three_prime_UTR 9826584 9826912 9826584 ID=Msa1275680-mRNA-1:three_prime_utr;Parent=Msa1275680-mRNA-1
Gene Sequence

>Msa1275680

ATGAAGGGAAGATTATTCTGTTTTCTGCTAACTCTTCAAATAGTGAGTTTGGTTTGTGTAGCAAAGAGGCCTTTTCTTTCAACTCATGGTATTTCACATTCAGCTCAAGAAAATGCTCCAAAATCTTCACCACCTTATGCCATTGAATCAAAAAAGTTAAAGGGTATAATGGGAACAGAAAGTATGTCAAAGAAAAGGGAGGTAGAAAATGATAGAGAAGTGAGTAAAATAGGGTCAAGTCCACCAAGCTGTGAGCATAAATGTTATGGTTGTTTTCCATGTGAAGCTACTCAAGTACCAAGCAGAACAAGCCATTTGGGGATTATGTATGCAAATTATGAGCCTGAGAGTTGGAAATGCAAGTTGATACAAAACAAAAATGGTGCAATACAATTTCAAGAAGATTACCGTCGTACCAAATGGAAAAGATTTCGTTGA
Protein sequence

>Msa1275680

MKGRLFCFLLTLQIVSLVCVAKRPFLSTHGISHSAQENAPKSSPPYAIESKKLKGIMGTESMSKKREVENDREVSKIGSSPPSCEHKCYGCFPCEATQVPSRTSHLGIMYANYEPESWKCKLIQNKNGAIQFQEDYRRTKWKRFR*