Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356570 | XP_013467798.1 | 96.541 | 318 | 11 | 0 | 1 | 318 | 1 | 318 | 0.0 | 629 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356570 | I3SHR4 | 96.541 | 318 | 11 | 0 | 1 | 318 | 1 | 318 | 0.0 | 629 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0062120 | Msa1356570 | 0.827729 | 1.332036e-54 | -8.615850e-47 |
| Msa0069330 | Msa1356570 | 0.822239 | 2.634350e-53 | -8.615850e-47 |
| Msa0104550 | Msa1356570 | 0.820409 | 6.964924e-53 | -8.615850e-47 |
| Msa1356570 | Msa1439610 | 0.800585 | 1.345289e-48 | -8.615850e-47 |
| Msa0144360 | Msa1356570 | 0.831180 | 1.931994e-55 | -8.615850e-47 |
| Msa1050910 | Msa1356570 | 0.801229 | 9.937627e-49 | -8.615850e-47 |
| Msa0560080 | Msa1356570 | 0.802369 | 5.795604e-49 | -8.615850e-47 |
| Msa0574890 | Msa1356570 | 0.807470 | 4.975677e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356570 | MtrunA17_Chr1g0176681 | 96.541 | 318 | 11 | 0 | 1 | 318 | 1 | 318 | 0.0 | 629 |
| Msa1356570 | MtrunA17_Chr4g0039211 | 92.767 | 318 | 23 | 0 | 1 | 318 | 1 | 318 | 0.0 | 602 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1356570 | AT3G13410.1 | 51.258 | 318 | 143 | 7 | 5 | 318 | 11 | 320 | 5.98e-104 | 307 |
| Msa1356570 | AT1G55546.1 | 58.696 | 92 | 35 | 2 | 22 | 113 | 41 | 129 | 9.74e-27 | 102 |
Find 98 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGAAGACTCATTGGTTTC+TGG | 0.136163 | tig0015764:-4626 | Msa1356570:CDS |
| GCCATTTCACCTTCAAATTA+AGG | 0.150956 | tig0015764:+1782 | Msa1356570:intergenic |
| TTGTCTCTCTCTTCTCTTCA+TGG | 0.197829 | tig0015764:-1811 | Msa1356570:three_prime_UTR |
| TTTCCTTGGATCTTGCTCTA+TGG | 0.240071 | tig0015764:-4558 | Msa1356570:CDS |
| CAATCCAGTATCCTTCTTAT+AGG | 0.262025 | tig0015764:-4118 | Msa1356570:CDS |
| TGTCTGAACCCTATTCATTA+AGG | 0.268446 | tig0015764:-1872 | Msa1356570:three_prime_UTR |
| CCAGCTTAAATCATCACTTT+TGG | 0.275529 | tig0015764:-4021 | Msa1356570:CDS |
| TTCCTTCCTCTTGGTCAAAT+AGG | 0.304215 | tig0015764:+4391 | Msa1356570:intergenic |
| GTGCAAAGGGAAGAAATTTC+AGG | 0.328710 | tig0015764:-5073 | Msa1356570:CDS |
| GTGGCGCCTCAAATCTTGTT+GGG | 0.331602 | tig0015764:+2184 | Msa1356570:intergenic |
| TGCAGTTAGTTTCTTTCTGC+TGG | 0.336004 | tig0015764:-1841 | Msa1356570:three_prime_UTR |
| ATATCCAATCCTTAATGAAT+AGG | 0.336654 | tig0015764:+1863 | Msa1356570:intergenic |
| ATCAGCACTGTAGAGGAATC+TGG | 0.337798 | tig0015764:-4182 | Msa1356570:CDS |
| ACAGACTTTGCTAGGTCTTT+CGG | 0.342039 | tig0015764:+5322 | Msa1356570:intergenic |
| GTTAAAGATAGTATCTGTTC+TGG | 0.342539 | tig0015764:-2143 | Msa1356570:three_prime_UTR |
| TAGAAGAGAGAAACAAAATC+TGG | 0.344943 | tig0015764:-6620 | Msa1356570:five_prime_UTR |
| CCCTTAATTTGAAGGTGAAA+TGG | 0.347660 | tig0015764:-1783 | Msa1356570:three_prime_UTR |
| TTCCTTGGATCTTGCTCTAT+GGG | 0.350474 | tig0015764:-4557 | Msa1356570:CDS |
| CCATTTCACCTTCAAATTAA+GGG | 0.357033 | tig0015764:+1783 | Msa1356570:intergenic |
| GAAGGAGTCCGTTAATTATC+AGG | 0.359592 | tig0015764:-5353 | Msa1356570:CDS |
| TGTGGAGATGATTTAGGAAT+TGG | 0.359594 | tig0015764:-4590 | Msa1356570:CDS |
| CAGAGTTGTGTCGTGTGGTT+TGG | 0.366039 | tig0015764:-6571 | Msa1356570:five_prime_UTR |
| CCACTGTTCCCGCATTCCTT+TGG | 0.373851 | tig0015764:-6341 | Msa1356570:CDS |
| GTGGCTCTCTTCCTTCCTCT+TGG | 0.374455 | tig0015764:+4382 | Msa1356570:intergenic |
| CCACAAAGGGAAAACAGATT+TGG | 0.378624 | tig0015764:-4363 | Msa1356570:CDS |
| GATCTGGCACTTCTATTTGT+TGG | 0.383798 | tig0015764:-5042 | Msa1356570:CDS |
| AATCCAGTATCCTTCTTATA+GGG | 0.385077 | tig0015764:-4117 | Msa1356570:CDS |
| TCCATCACAGGCTGTAGAAT+TGG | 0.387387 | tig0015764:+4049 | Msa1356570:intergenic |
| TATCCAATCCTTAATGAATA+GGG | 0.389145 | tig0015764:+1864 | Msa1356570:intergenic |
| GAAGCCTGTGGAGATGATTT+AGG | 0.390687 | tig0015764:-4596 | Msa1356570:CDS |
| TTTCTAGCAGAAAGTACAAC+AGG | 0.392572 | tig0015764:-4083 | Msa1356570:CDS |
| GATCCCTATAAGAAGGATAC+TGG | 0.395705 | tig0015764:+4114 | Msa1356570:intergenic |
| TGTGGCGCCTCAAATCTTGT+TGG | 0.398283 | tig0015764:+2183 | Msa1356570:intergenic |
| TGTGAACTTGGAAGACTCAT+TGG | 0.398899 | tig0015764:-4633 | Msa1356570:CDS |
| TGGCTTCACCCTTAATTTGA+AGG | 0.403698 | tig0015764:-1791 | Msa1356570:three_prime_UTR |
| ATTGGCAACGTTGCTTTCCT+TGG | 0.404386 | tig0015764:-4572 | Msa1356570:CDS |
| GATAGTATCTGTTCTGGTGC+TGG | 0.415497 | tig0015764:-2137 | Msa1356570:three_prime_UTR |
| CAGATACTATCTTTAACAAA+TGG | 0.449419 | tig0015764:+2149 | Msa1356570:intergenic |
| TGCATCAGAGGATGTGAACT+TGG | 0.454234 | tig0015764:-4645 | Msa1356570:CDS |
| AGAAATGACCTGATAATTAA+CGG | 0.454559 | tig0015764:+5345 | Msa1356570:intergenic |
| CAGATAAAACAGACTTTGCT+AGG | 0.471417 | tig0015764:+5314 | Msa1356570:intergenic |
| GAACCCTATTCATTAAGGAT+TGG | 0.480805 | tig0015764:-1867 | Msa1356570:three_prime_UTR |
| CTGGCACTTCTATTTGTTGG+TGG | 0.482408 | tig0015764:-5039 | Msa1356570:CDS |
| ATCGGGCCTTTGCTGTATGA+TGG | 0.483662 | tig0015764:-2217 | Msa1356570:CDS |
| TCAGCACTGTAGAGGAATCT+GGG | 0.496576 | tig0015764:-4181 | Msa1356570:CDS |
| TCCTCTGATGCAGAAACATA+AGG | 0.497818 | tig0015764:+4656 | Msa1356570:intergenic |
| TGACACCCCAACAAGATTTG+AGG | 0.505755 | tig0015764:-2190 | Msa1356570:CDS |
| ATTTCAGGATCCTCTCGATC+TGG | 0.506004 | tig0015764:-5058 | Msa1356570:CDS |
| TCCTTATGTTTCTGCATCAG+AGG | 0.506315 | tig0015764:-4657 | Msa1356570:CDS |
| ATAGTATCTGTTCTGGTGCT+GGG | 0.510684 | tig0015764:-2136 | Msa1356570:three_prime_UTR |
| GCAGAAAGTACAACAGGGAA+TGG | 0.512267 | tig0015764:-4077 | Msa1356570:CDS |
| GATCTCAGACAATGGATTGA+AGG | 0.512566 | tig0015764:-5371 | Msa1356570:CDS |
| AGGAAATGCCATGGAAGTGT+TGG | 0.514527 | tig0015764:+4676 | Msa1356570:intergenic |
| AATTGCAAAGACTACTCCAT+TGG | 0.522813 | tig0015764:+6368 | Msa1356570:intergenic |
| GGAAGGAAGAGAGCCACAAA+GGG | 0.523325 | tig0015764:-4376 | Msa1356570:CDS |
| GGATCTTGCTCTATGGGCAC+TGG | 0.526165 | tig0015764:-4551 | Msa1356570:CDS |
| ATTGCAAAGACTACTCCATT+GGG | 0.529893 | tig0015764:+6369 | Msa1356570:intergenic |
| CTTTGCAGATCCCTATAAGA+AGG | 0.530818 | tig0015764:+4107 | Msa1356570:intergenic |
| TGTCAGATCCAACACTTCCA+TGG | 0.535398 | tig0015764:-4684 | Msa1356570:CDS |
| TCTGGATTTGCTGAAGCCTG+TGG | 0.536506 | tig0015764:-4608 | Msa1356570:CDS |
| ACTTCTATTTGTTGGTGGAG+AGG | 0.537885 | tig0015764:-5034 | Msa1356570:intron |
| TCGGGCCTTTGCTGTATGAT+GGG | 0.544701 | tig0015764:-2216 | Msa1356570:CDS |
| CTTTGCAGGATCTCAGACAA+TGG | 0.545420 | tig0015764:-5379 | Msa1356570:intron |
| AGGAAGGAAGAGAGCCACAA+AGG | 0.547575 | tig0015764:-4377 | Msa1356570:CDS |
| TGAGATGACCAAAGGAATGC+GGG | 0.554399 | tig0015764:+6333 | Msa1356570:intergenic |
| CCAAAAGTGATGATTTAAGC+TGG | 0.555189 | tig0015764:+4021 | Msa1356570:intergenic |
| ACCAATTCTACAGCCTGTGA+TGG | 0.557753 | tig0015764:-4050 | Msa1356570:CDS |
| AGCTCTTTCTCACTTGCTCA+AGG | 0.562369 | tig0015764:-4830 | Msa1356570:intron |
| AATTCCTAAATCATCTCCAC+AGG | 0.570593 | tig0015764:+4592 | Msa1356570:intergenic |
| AGAAGAGAGAAACAAAATCT+GGG | 0.575016 | tig0015764:-6619 | Msa1356570:five_prime_UTR |
| CCAAAGGAATGCGGGAACAG+TGG | 0.580702 | tig0015764:+6341 | Msa1356570:intergenic |
| GATTTGGTTGTGTTCTGCAA+TGG | 0.583901 | tig0015764:-4347 | Msa1356570:CDS |
| CACACGACACAACTCTGCCT+CGG | 0.584338 | tig0015764:+6577 | Msa1356570:intergenic |
| TGGCGCCTCAAATCTTGTTG+GGG | 0.585241 | tig0015764:+2185 | Msa1356570:intergenic |
| AGGAATGCGGGAACAGTGGA+GGG | 0.590173 | tig0015764:+6345 | Msa1356570:intergenic |
| CTTCTTATAGGGATCTGCAA+AGG | 0.590622 | tig0015764:-4106 | Msa1356570:CDS |
| AAAAGTAAAACATCTATCGT+AGG | 0.594345 | tig0015764:-1978 | Msa1356570:three_prime_UTR |
| CAAATGGATCATCACTCTTG+TGG | 0.596002 | tig0015764:+2165 | Msa1356570:intergenic |
| GGCCTATTTGACCAAGAGGA+AGG | 0.601192 | tig0015764:-4393 | Msa1356570:CDS |
| AAGGAATGCGGGAACAGTGG+AGG | 0.601514 | tig0015764:+6344 | Msa1356570:intergenic |
| GCAACAATGAAAGCGAGTAA+TGG | 0.603257 | tig0015764:+6405 | Msa1356570:intergenic |
| AAGCTGGCAGACTCCATCAC+AGG | 0.606782 | tig0015764:+4037 | Msa1356570:intergenic |
| TACAGGCCTATTTGACCAAG+AGG | 0.610661 | tig0015764:-4397 | Msa1356570:intron |
| CGAGGCAGAGTTGTGTCGTG+TGG | 0.611000 | tig0015764:-6576 | Msa1356570:five_prime_UTR |
| TGAGCTTATCAGCACTGTAG+AGG | 0.612011 | tig0015764:-4189 | Msa1356570:CDS |
| ATGAGATGACCAAAGGAATG+CGG | 0.613640 | tig0015764:+6332 | Msa1356570:intergenic |
| AATAGAAGTGCCAGATCGAG+AGG | 0.625453 | tig0015764:+5048 | Msa1356570:intergenic |
| GTTGACAGAACACAATCTGA+AGG | 0.628507 | tig0015764:-4305 | Msa1356570:intron |
| TGCCCATAGAGCAAGATCCA+AGG | 0.630609 | tig0015764:+4555 | Msa1356570:intergenic |
| AGTTATAATGAGATGACCAA+AGG | 0.630893 | tig0015764:+6325 | Msa1356570:intergenic |
| AGTAATGGCATCACCATCGT+TGG | 0.633211 | tig0015764:+6420 | Msa1356570:intergenic |
| CAATTCCCATCATACAGCAA+AGG | 0.645532 | tig0015764:+2211 | Msa1356570:intergenic |
| TTTATGTATCAGATATCTCG+AGG | 0.646281 | tig0015764:-4142 | Msa1356570:CDS |
| CAGCACTGTAGAGGAATCTG+GGG | 0.657625 | tig0015764:-4180 | Msa1356570:CDS |
| AGAAACATAAGGAAATGCCA+TGG | 0.674109 | tig0015764:+4667 | Msa1356570:intergenic |
| TTCTAGCAGAAAGTACAACA+GGG | 0.701869 | tig0015764:-4082 | Msa1356570:CDS |
| GTTTCAGGAAGAACCAACGA+TGG | 0.713963 | tig0015764:-6433 | Msa1356570:intron |
| ACATCGTGAGATCTCGACCG+AGG | 0.726171 | tig0015764:-6594 | Msa1356570:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAAAAAACAATTATTT+AGG | + | tig0015764:4663-4682 | Msa1356570:intergenic | 10.0% |
| !!! | TGTATTTTAATTTTCATTTT+AGG | - | tig0015764:4918-4937 | Msa1356570:intron | 10.0% |
| !!! | TTTGTTAATAATTTTGATAT+CGG | - | tig0015764:6179-6198 | Msa1356570:intron | 10.0% |
| !! | AATGAAATTTCATTTGAAAA+AGG | - | tig0015764:2360-2379 | Msa1356570:intron | 15.0% |
| !! | CAGATAAGAAAATATAAATA+GGG | - | tig0015764:2770-2789 | Msa1356570:intron | 15.0% |
| !! | TAAAATTGTTTATATCTTAC+TGG | - | tig0015764:3010-3029 | Msa1356570:intron | 15.0% |
| !!! | TCCTTTTTCAATTTTTTATT+TGG | - | tig0015764:3315-3334 | Msa1356570:intron | 15.0% |
| !! | TCCAAATAAAAAATTGAAAA+AGG | + | tig0015764:3319-3338 | Msa1356570:intergenic | 15.0% |
| !!! | TATTGTAAAACTTTTTCTAA+TGG | - | tig0015764:4867-4886 | Msa1356570:CDS | 15.0% |
| !! | ATAAATTAACATATATGTAG+CGG | - | tig0015764:4951-4970 | Msa1356570:intron | 15.0% |
| !! | ATTTATAAAACATTAGAAAG+AGG | - | tig0015764:5591-5610 | Msa1356570:intron | 15.0% |
| !!! | AAAAGATGATTATTTTTCAT+TGG | - | tig0015764:5819-5838 | Msa1356570:intron | 15.0% |
| !!! | TTGTTAATAATTTTGATATC+GGG | - | tig0015764:6180-6199 | Msa1356570:intron | 15.0% |
| !!! | ATATCAATTGCAATTTTTTA+CGG | - | tig0015764:6326-6345 | Msa1356570:CDS | 15.0% |
| !! | AATGAGTAAAAAAAAATTAC+AGG | + | tig0015764:6368-6387 | Msa1356570:intergenic | 15.0% |
| !! | AAAAAATAAGTCAATCCAAA+CGG | - | tig0015764:2266-2285 | Msa1356570:intron | 20.0% |
| !! | ATTTGAAAAAGGTTCAAAAT+TGG | - | tig0015764:2371-2390 | Msa1356570:intron | 20.0% |
| !! | TAAAGTGTATATAGTAAAGA+AGG | - | tig0015764:2734-2753 | Msa1356570:intron | 20.0% |
| !! | GCAGATAAGAAAATATAAAT+AGG | - | tig0015764:2769-2788 | Msa1356570:intron | 20.0% |
| !!! | GGTTTTGTATATTTTACAAA+TGG | + | tig0015764:2813-2832 | Msa1356570:intergenic | 20.0% |
| !! | TATTCTATATCATATAAGCA+TGG | - | tig0015764:2918-2937 | Msa1356570:intron | 20.0% |
| !! | ATTCTATATCATATAAGCAT+GGG | - | tig0015764:2919-2938 | Msa1356570:intron | 20.0% |
| !! | ATTATCTATTGTAACTTTAC+AGG | - | tig0015764:4000-4019 | Msa1356570:intron | 20.0% |
| !! | TTAACTGCATTTGTAAAAAT+GGG | + | tig0015764:4446-4465 | Msa1356570:intergenic | 20.0% |
| !! | ATTAACTGCATTTGTAAAAA+TGG | + | tig0015764:4447-4466 | Msa1356570:intergenic | 20.0% |
| !!! | ATAGTGTTTTATTCATAAGA+AGG | + | tig0015764:4540-4559 | Msa1356570:intergenic | 20.0% |
| !! | GATAGTAGATGAATAAATAA+AGG | - | tig0015764:4826-4845 | Msa1356570:intron | 20.0% |
| !!! | GTATTATGTTTTATGAAGTA+GGG | + | tig0015764:5055-5074 | Msa1356570:intergenic | 20.0% |
| !!! | TGTATTATGTTTTATGAAGT+AGG | + | tig0015764:5056-5075 | Msa1356570:intergenic | 20.0% |
| !!! | TTTTTAAATTAAGTGTGCAA+AGG | + | tig0015764:5422-5441 | Msa1356570:intergenic | 20.0% |
| !! | AGTGATTAAAAAAAATGAGT+CGG | + | tig0015764:6081-6100 | Msa1356570:intergenic | 20.0% |
| !!! | GATGTTTTACTTTTATACAA+TGG | + | tig0015764:6430-6449 | Msa1356570:intergenic | 20.0% |
| !! | CTTGATTTGATTATTGTTTC+AGG | - | tig0015764:1966-1985 | Msa1356570:three_prime_UTR | 25.0% |
| ! | TAGTTAGTTATGCTTGATTT+AGG | - | tig0015764:2152-2171 | Msa1356570:three_prime_UTR | 25.0% |
| ! | AAAAATAAGTCAATCCAAAC+GGG | - | tig0015764:2267-2286 | Msa1356570:intron | 25.0% |
| ! | ATTGGAACAGAAGAAAATTA+TGG | - | tig0015764:2389-2408 | Msa1356570:intron | 25.0% |
| ! | TTGGAACAGAAGAAAATTAT+GGG | - | tig0015764:2390-2409 | Msa1356570:intron | 25.0% |
| ! | TTTCTAGGTGAAACAATTAT+TGG | + | tig0015764:2665-2684 | Msa1356570:intergenic | 25.0% |
| ! | AAAGAACAAGAACAAAATGA+GGG | + | tig0015764:2834-2853 | Msa1356570:intergenic | 25.0% |
| ! | AGAAATGACCTGATAATTAA+CGG | + | tig0015764:3072-3091 | Msa1356570:intergenic | 25.0% |
| !!! | TACAAGATTAGTTTCCTATT+GGG | - | tig0015764:3160-3179 | Msa1356570:intron | 25.0% |
| ! | CAAGACAACAAATGTAAAAT+AGG | + | tig0015764:3452-3471 | Msa1356570:intergenic | 25.0% |
| !! | ATGACTGATTATGGAATTTT+AGG | - | tig0015764:3945-3964 | Msa1356570:intron | 25.0% |
| !! | CATGCATGTTGTATATTTTT+AGG | - | tig0015764:4190-4209 | Msa1356570:CDS | 25.0% |
| ! | TTACAAATGCAGTTAATTGA+TGG | - | tig0015764:4450-4469 | Msa1356570:intron | 25.0% |
| !! | AAAACAATTATTTAGGACAC+CGG | + | tig0015764:4656-4675 | Msa1356570:intergenic | 25.0% |
| !!! | TCCTATATTTTTTACAGTAG+CGG | - | tig0015764:4982-5001 | Msa1356570:intron | 25.0% |
| ! | ATGATAAAAGAGTGGTATAA+TGG | + | tig0015764:5083-5102 | Msa1356570:intergenic | 25.0% |
| ! | AGATAATTTAATCACAGAGA+AGG | + | tig0015764:5135-5154 | Msa1356570:intergenic | 25.0% |
| !! | AACTATGCAATTGGTTATTT+TGG | - | tig0015764:5289-5308 | Msa1356570:intron | 25.0% |
| ! | TATCTATAGACATGTATACA+AGG | + | tig0015764:5447-5466 | Msa1356570:intergenic | 25.0% |
| ! | ATACAGAAATAGCGAAAAAA+AGG | - | tig0015764:5668-5687 | Msa1356570:intron | 25.0% |
| ! | TAACATTGGATATTAATGGA+AGG | + | tig0015764:6056-6075 | Msa1356570:intergenic | 25.0% |
| ! | TTATTAACAAAACTATTCCC+TGG | + | tig0015764:6170-6189 | Msa1356570:intergenic | 25.0% |
| ! | CAGATACTATCTTTAACAAA+TGG | + | tig0015764:6268-6287 | Msa1356570:intergenic | 25.0% |
| ! | AAAAGTAAAACATCTATCGT+AGG | - | tig0015764:6436-6455 | Msa1356570:intron | 25.0% |
| !! | TAAAATTTTACAACACCTGT+AGG | + | tig0015764:6475-6494 | Msa1356570:intergenic | 25.0% |
| ! | TATCCAATCCTTAATGAATA+GGG | + | tig0015764:6553-6572 | Msa1356570:intergenic | 25.0% |
| ! | ATATCCAATCCTTAATGAAT+AGG | + | tig0015764:6554-6573 | Msa1356570:intergenic | 25.0% |
| TAGAAGAGAGAAACAAAATC+TGG | - | tig0015764:1794-1813 | Msa1356570:three_prime_UTR | 30.0% | |
| AGAAGAGAGAAACAAAATCT+GGG | - | tig0015764:1795-1814 | Msa1356570:three_prime_UTR | 30.0% | |
| AGAACGTAAGTTACAAGATT+AGG | - | tig0015764:1897-1916 | Msa1356570:three_prime_UTR | 30.0% | |
| AGTTATAATGAGATGACCAA+AGG | + | tig0015764:2092-2111 | Msa1356570:intergenic | 30.0% | |
| AATAAGCTGTTTATCCAAAC+AGG | + | tig0015764:2179-2198 | Msa1356570:intergenic | 30.0% | |
| !! | AGCTATTTTCTAAGCTATCT+TGG | - | tig0015764:2209-2228 | Msa1356570:CDS | 30.0% |
| !! | AAAAGTTTTGTAGCTTTCCA+AGG | - | tig0015764:2299-2318 | Msa1356570:intron | 30.0% |
| !! | AAAGTTTTGTAGCTTTCCAA+GGG | - | tig0015764:2300-2319 | Msa1356570:intron | 30.0% |
| !! | ATTTAGGTTTGCAGATTTTG+TGG | - | tig0015764:2706-2725 | Msa1356570:intron | 30.0% |
| CAAAGAACAAGAACAAAATG+AGG | + | tig0015764:2835-2854 | Msa1356570:intergenic | 30.0% | |
| TCATTGAGTATTCATGTCTT+AGG | - | tig0015764:2961-2980 | Msa1356570:intron | 30.0% | |
| AGGAAACTAATCTTGTAGAT+AGG | + | tig0015764:3157-3176 | Msa1356570:intergenic | 30.0% | |
| !! | CTACAAGATTAGTTTCCTAT+TGG | - | tig0015764:3159-3178 | Msa1356570:intron | 30.0% |
| !! | ACAAGATTAGTTTCCTATTG+GGG | - | tig0015764:3161-3180 | Msa1356570:intron | 30.0% |
| AAAAGTTTAAGAGAGAGGTA+GGG | + | tig0015764:3197-3216 | Msa1356570:intergenic | 30.0% | |
| TAAAAGTTTAAGAGAGAGGT+AGG | + | tig0015764:3198-3217 | Msa1356570:intergenic | 30.0% | |
| ! | ACCTCTCTCTTAAACTTTTA+CGG | - | tig0015764:3198-3217 | Msa1356570:intron | 30.0% |
| ! | TCTTAAACTTTTACGGAGAA+GGG | - | tig0015764:3205-3224 | Msa1356570:intron | 30.0% |
| ! | TGATAGCATTTGTTCAGTTT+TGG | - | tig0015764:3254-3273 | Msa1356570:intron | 30.0% |
| !! | TTTTTATTTGGACAGTGCAA+AGG | - | tig0015764:3327-3346 | Msa1356570:intron | 30.0% |
| !! | TTTTATTTGGACAGTGCAAA+GGG | - | tig0015764:3328-3347 | Msa1356570:intron | 30.0% |
| !! | TTTTAGGTCCTTCTTTGTAA+TGG | - | tig0015764:3961-3980 | Msa1356570:intron | 30.0% |
| TACATCTACTTCAGAGTTAT+GGG | - | tig0015764:4132-4151 | Msa1356570:CDS | 30.0% | |
| TTTATGTATCAGATATCTCG+AGG | - | tig0015764:4272-4291 | Msa1356570:intron | 30.0% | |
| AATCCAGTATCCTTCTTATA+GGG | - | tig0015764:4297-4316 | Msa1356570:intron | 30.0% | |
| !! | CTTAAATCATCACTTTTGGA+GGG | - | tig0015764:4397-4416 | Msa1356570:intron | 30.0% |
| GAATAAAACACTATGAAGCA+CGG | - | tig0015764:4546-4565 | Msa1356570:CDS | 30.0% | |
| TATGAGTGTTATATAGGTGT+CGG | + | tig0015764:4711-4730 | Msa1356570:intergenic | 30.0% | |
| ACCGCTACTGTAAAAAATAT+AGG | + | tig0015764:4986-5005 | Msa1356570:intergenic | 30.0% | |
| AATGGAACATGATAAAAGAG+TGG | + | tig0015764:5091-5110 | Msa1356570:intergenic | 30.0% | |
| GGGAAAAACAGAAGAAAAAA+TGG | + | tig0015764:5109-5128 | Msa1356570:intergenic | 30.0% | |
| TTTAATCACAGAGAAGGAAA+GGG | + | tig0015764:5129-5148 | Msa1356570:intergenic | 30.0% | |
| ATTTAATCACAGAGAAGGAA+AGG | + | tig0015764:5130-5149 | Msa1356570:intergenic | 30.0% | |
| TGTAGTATCATTGAAATTCG+AGG | + | tig0015764:5227-5246 | Msa1356570:intergenic | 30.0% | |
| TATGGAAGCGAATAAAGAAA+AGG | + | tig0015764:5267-5286 | Msa1356570:intergenic | 30.0% | |
| TTCCATACAAACTATGCAAT+TGG | - | tig0015764:5280-5299 | Msa1356570:intron | 30.0% | |
| ! | AACCAATTGCATAGTTTGTA+TGG | + | tig0015764:5285-5304 | Msa1356570:intergenic | 30.0% |
| CTATAGATAGACTATTGTTG+AGG | - | tig0015764:5458-5477 | Msa1356570:intron | 30.0% | |
| GTCTAAATAGTTCAAATGCA+GGG | + | tig0015764:5552-5571 | Msa1356570:intergenic | 30.0% | |
| TGTCTAAATAGTTCAAATGC+AGG | + | tig0015764:5553-5572 | Msa1356570:intergenic | 30.0% | |
| ATGATTCACATAATCAAAGC+TGG | - | tig0015764:5623-5642 | Msa1356570:intron | 30.0% | |
| TTTCATTGGAAACCTAAATG+AGG | - | tig0015764:5833-5852 | Msa1356570:intron | 30.0% | |
| TTGATATAAATTCCAAGTGG+AGG | + | tig0015764:5939-5958 | Msa1356570:intergenic | 30.0% | |
| CCATTGATATAAATTCCAAG+TGG | + | tig0015764:5942-5961 | Msa1356570:intergenic | 30.0% | |
| CCACTTGGAATTTATATCAA+TGG | - | tig0015764:5939-5958 | Msa1356570:intron | 30.0% | |
| GGAGTAACATTGGATATTAA+TGG | + | tig0015764:6060-6079 | Msa1356570:intergenic | 30.0% | |
| !!! | GTTGCTTTTGTAATAATCCA+GGG | - | tig0015764:6150-6169 | Msa1356570:intron | 30.0% |
| GTTAAAGATAGTATCTGTTC+TGG | - | tig0015764:6271-6290 | Msa1356570:intron | 30.0% | |
| !!! | TCAATTGCAATTTTTTACGG+AGG | - | tig0015764:6329-6348 | Msa1356570:CDS | 30.0% |
| !!! | GGTTTTAATTTTGATCCTAC+AGG | - | tig0015764:6457-6476 | Msa1356570:intron | 30.0% |
| CCATTTCACCTTCAAATTAA+GGG | + | tig0015764:6634-6653 | Msa1356570:intergenic | 30.0% | |
| ATTGCAAAGACTACTCCATT+GGG | + | tig0015764:2048-2067 | Msa1356570:intergenic | 35.0% | |
| AATTGCAAAGACTACTCCAT+TGG | + | tig0015764:2049-2068 | Msa1356570:intergenic | 35.0% | |
| ACTATCAATTCCTAAACCCT+TGG | + | tig0015764:2319-2338 | Msa1356570:intergenic | 35.0% | |
| ! | AATTGATAGTAAAAGACGCG+TGG | - | tig0015764:2329-2348 | Msa1356570:intron | 35.0% |
| CCTAAAGCTACAAAAACACA+AGG | + | tig0015764:2443-2462 | Msa1356570:intergenic | 35.0% | |
| !! | CCTTGTGTTTTTGTAGCTTT+AGG | - | tig0015764:2440-2459 | Msa1356570:intron | 35.0% |
| ! | TTTGAATTGCCACAACGTTT+TGG | - | tig0015764:2469-2488 | Msa1356570:intron | 35.0% |
| TAATCCGAAAAATCTATCCC+CGG | + | tig0015764:2516-2535 | Msa1356570:intergenic | 35.0% | |
| AGGTGAAACAATTATTGGTC+AGG | + | tig0015764:2660-2679 | Msa1356570:intergenic | 35.0% | |
| TTTCACCTAGAAATCGAACT+TGG | - | tig0015764:2672-2691 | Msa1356570:intron | 35.0% | |
| TTCACCTAGAAATCGAACTT+GGG | - | tig0015764:2673-2692 | Msa1356570:intron | 35.0% | |
| TGTTCTTTGCTTGTCTTTAG+TGG | - | tig0015764:2846-2865 | Msa1356570:intron | 35.0% | |
| CAGATAAAACAGACTTTGCT+AGG | + | tig0015764:3103-3122 | Msa1356570:intergenic | 35.0% | |
| !! | AAGTCTGTTTTATCTGAAGC+AGG | - | tig0015764:3107-3126 | Msa1356570:intron | 35.0% |
| TCCGTAAAAGTTTAAGAGAG+AGG | + | tig0015764:3202-3221 | Msa1356570:intergenic | 35.0% | |
| ! | CTCTTAAACTTTTACGGAGA+AGG | - | tig0015764:3204-3223 | Msa1356570:intron | 35.0% |
| TTTCTGTGTAAACCTGATTC+AGG | - | tig0015764:3641-3660 | Msa1356570:intron | 35.0% | |
| AGAAACATAAGGAAATGCCA+TGG | + | tig0015764:3750-3769 | Msa1356570:intergenic | 35.0% | |
| AATTCCTAAATCATCTCCAC+AGG | + | tig0015764:3825-3844 | Msa1356570:intergenic | 35.0% | |
| TGTGGAGATGATTTAGGAAT+TGG | - | tig0015764:3824-3843 | Msa1356570:intron | 35.0% | |
| TCATGTGACATGACTGATTA+TGG | - | tig0015764:3936-3955 | Msa1356570:intron | 35.0% | |
| TCATGCAACCATTACAAAGA+AGG | + | tig0015764:3972-3991 | Msa1356570:intergenic | 35.0% | |
| ! | TCAACATTTTGTGAAGCTTG+AGG | + | tig0015764:4094-4113 | Msa1356570:intergenic | 35.0% |
| GTACATCTACTTCAGAGTTA+TGG | - | tig0015764:4131-4150 | Msa1356570:CDS | 35.0% | |
| CAATCCAGTATCCTTCTTAT+AGG | - | tig0015764:4296-4315 | Msa1356570:intron | 35.0% | |
| ! | TTTCTAGCAGAAAGTACAAC+AGG | - | tig0015764:4331-4350 | Msa1356570:CDS | 35.0% |
| ! | TTCTAGCAGAAAGTACAACA+GGG | - | tig0015764:4332-4351 | Msa1356570:CDS | 35.0% |
| CCAAAAGTGATGATTTAAGC+TGG | + | tig0015764:4396-4415 | Msa1356570:intergenic | 35.0% | |
| ! | CCAGCTTAAATCATCACTTT+TGG | - | tig0015764:4393-4412 | Msa1356570:CDS | 35.0% |
| !! | GCTTAAATCATCACTTTTGG+AGG | - | tig0015764:4396-4415 | Msa1356570:intron | 35.0% |
| CTAAACAACTCTTGTGTCTA+TGG | + | tig0015764:4799-4818 | Msa1356570:intergenic | 35.0% | |
| TAACATATATGTAGCGGTCT+CGG | - | tig0015764:4957-4976 | Msa1356570:intron | 35.0% | |
| ATGCATATGAAGTGTACTTG+TGG | + | tig0015764:5162-5181 | Msa1356570:intergenic | 35.0% | |
| CTTCATATGCATGCTTGTAT+AGG | - | tig0015764:5170-5189 | Msa1356570:intron | 35.0% | |
| TGTTCACGTATCAGATTGAA+GGG | + | tig0015764:5371-5390 | Msa1356570:intergenic | 35.0% | |
| ATGTTCACGTATCAGATTGA+AGG | + | tig0015764:5372-5391 | Msa1356570:intergenic | 35.0% | |
| AAAATGAGTCGGAGTAACAT+TGG | + | tig0015764:6070-6089 | Msa1356570:intergenic | 35.0% | |
| TCACTTTGCTGATATAGTGT+TGG | - | tig0015764:6096-6115 | Msa1356570:intron | 35.0% | |
| ATTACAAAAGCAACCTCATC+AGG | + | tig0015764:6144-6163 | Msa1356570:intergenic | 35.0% | |
| !!! | GGTTGCTTTTGTAATAATCC+AGG | - | tig0015764:6149-6168 | Msa1356570:intron | 35.0% |
| TGTCTGAACCCTATTCATTA+AGG | - | tig0015764:6542-6561 | Msa1356570:five_prime_UTR | 35.0% | |
| GAACCCTATTCATTAAGGAT+TGG | - | tig0015764:6547-6566 | Msa1356570:five_prime_UTR | 35.0% | |
| ! | CCCTTAATTTGAAGGTGAAA+TGG | - | tig0015764:6631-6650 | Msa1356570:five_prime_UTR | 35.0% |
| GCCATTTCACCTTCAAATTA+AGG | + | tig0015764:6635-6654 | Msa1356570:intergenic | 35.0% | |
| GCAACAATGAAAGCGAGTAA+TGG | + | tig0015764:2012-2031 | Msa1356570:intergenic | 40.0% | |
| ATGAGATGACCAAAGGAATG+CGG | + | tig0015764:2085-2104 | Msa1356570:intergenic | 40.0% | |
| ! | TGCTTGATTTAGGACCTGTT+TGG | - | tig0015764:2162-2181 | Msa1356570:exon | 40.0% |
| AATAAGTCAATCCAAACGGG+CGG | - | tig0015764:2270-2289 | Msa1356570:intron | 40.0% | |
| TTGTAGCTTTCCAAGGGTTT+AGG | - | tig0015764:2306-2325 | Msa1356570:intron | 40.0% | |
| TGTGATGAACCAAAACGTTG+TGG | + | tig0015764:2481-2500 | Msa1356570:intergenic | 40.0% | |
| !!! | ACAACGTTTTGGTTCATCAC+AGG | - | tig0015764:2480-2499 | Msa1356570:intron | 40.0% |
| ATCTCCCAAGTTCGATTTCT+AGG | + | tig0015764:2680-2699 | Msa1356570:intergenic | 40.0% | |
| TAGAAATCGAACTTGGGAGA+TGG | - | tig0015764:2679-2698 | Msa1356570:intron | 40.0% | |
| CTTGGGAGATGGTTACATTT+AGG | - | tig0015764:2690-2709 | Msa1356570:intron | 40.0% | |
| GATGCTTCTTGTAGTAGTAG+AGG | - | tig0015764:2888-2907 | Msa1356570:intron | 40.0% | |
| ATATCTTACTGGACCTTTGC+AGG | - | tig0015764:3021-3040 | Msa1356570:intron | 40.0% | |
| !! | GATCTCAGACAATGGATTGA+AGG | - | tig0015764:3043-3062 | Msa1356570:intron | 40.0% |
| GAAGGAGTCCGTTAATTATC+AGG | - | tig0015764:3061-3080 | Msa1356570:intron | 40.0% | |
| ACAGACTTTGCTAGGTCTTT+CGG | + | tig0015764:3095-3114 | Msa1356570:intergenic | 40.0% | |
| !! | CTGTTTTATCTGAAGCAGGA+TGG | - | tig0015764:3111-3130 | Msa1356570:intron | 40.0% |
| ! | AGCAGGATGGTCAAATTTTC+TGG | - | tig0015764:3124-3143 | Msa1356570:intron | 40.0% |
| GTGCAAAGGGAAGAAATTTC+AGG | - | tig0015764:3341-3360 | Msa1356570:intron | 40.0% | |
| GATCTGGCACTTCTATTTGT+TGG | - | tig0015764:3372-3391 | Msa1356570:intron | 40.0% | |
| ! | ACTTCTATTTGTTGGTGGAG+AGG | - | tig0015764:3380-3399 | Msa1356570:intron | 40.0% |
| ATTCCTGTCAATGAGTGCAT+CGG | - | tig0015764:3481-3500 | Msa1356570:intron | 40.0% | |
| TCTGAAGACTGTAACTGCAA+CGG | + | tig0015764:3537-3556 | Msa1356570:intergenic | 40.0% | |
| ! | TCCTTATGTTTCTGCATCAG+AGG | - | tig0015764:3757-3776 | Msa1356570:intron | 40.0% |
| TCCTCTGATGCAGAAACATA+AGG | + | tig0015764:3761-3780 | Msa1356570:intergenic | 40.0% | |
| TGTGAACTTGGAAGACTCAT+TGG | - | tig0015764:3781-3800 | Msa1356570:intron | 40.0% | |
| !! | TTGGAAGACTCATTGGTTTC+TGG | - | tig0015764:3788-3807 | Msa1356570:intron | 40.0% |
| TTTCCTTGGATCTTGCTCTA+TGG | - | tig0015764:3856-3875 | Msa1356570:intron | 40.0% | |
| TTCCTTGGATCTTGCTCTAT+GGG | - | tig0015764:3857-3876 | Msa1356570:intron | 40.0% | |
| TTCCTTCCTCTTGGTCAAAT+AGG | + | tig0015764:4026-4045 | Msa1356570:intergenic | 40.0% | |
| ! | CCAAATCTGTTTTCCCTTTG+TGG | + | tig0015764:4054-4073 | Msa1356570:intergenic | 40.0% |
| CCACAAAGGGAAAACAGATT+TGG | - | tig0015764:4051-4070 | Msa1356570:CDS | 40.0% | |
| ! | GATTTGGTTGTGTTCTGCAA+TGG | - | tig0015764:4067-4086 | Msa1356570:CDS | 40.0% |
| GTTGACAGAACACAATCTGA+AGG | - | tig0015764:4109-4128 | Msa1356570:CDS | 40.0% | |
| GATCCCTATAAGAAGGATAC+TGG | + | tig0015764:4303-4322 | Msa1356570:intergenic | 40.0% | |
| CTTTGCAGATCCCTATAAGA+AGG | + | tig0015764:4310-4329 | Msa1356570:intergenic | 40.0% | |
| CTTCTTATAGGGATCTGCAA+AGG | - | tig0015764:4308-4327 | Msa1356570:CDS | 40.0% | |
| !! | ACTTTTGGAGGGACTTTTAG+TGG | - | tig0015764:4408-4427 | Msa1356570:intron | 40.0% |
| CAGAATAGCACATTCGTAGA+AGG | + | tig0015764:4505-4524 | Msa1356570:intergenic | 40.0% | |
| ! | CTTCTACGAATGTGCTATTC+TGG | - | tig0015764:4503-4522 | Msa1356570:intron | 40.0% |
| GGCTCGTATGAGTGTTATAT+AGG | + | tig0015764:4717-4736 | Msa1356570:intergenic | 40.0% | |
| TATTTGTGAGTTCTCCGACA+CGG | + | tig0015764:4738-4757 | Msa1356570:intergenic | 40.0% | |
| AACTCTTGTGTCTATGGTGT+GGG | + | tig0015764:4793-4812 | Msa1356570:intergenic | 40.0% | |
| TGCATCAACTGATCCTCAAA+TGG | - | tig0015764:5499-5518 | Msa1356570:intron | 40.0% | |
| AACAAGACGTCTACCATTTG+AGG | + | tig0015764:5515-5534 | Msa1356570:intergenic | 40.0% | |
| ! | CAAATGGTAGACGTCTTGTT+TGG | - | tig0015764:5515-5534 | Msa1356570:intron | 40.0% |
| !! | TAGACGTCTTGTTTGGACTT+TGG | - | tig0015764:5522-5541 | Msa1356570:intron | 40.0% |
| ACGTGTAAGTCACCTCATTT+AGG | + | tig0015764:5848-5867 | Msa1356570:intergenic | 40.0% | |
| GTTAGATACGAGACACACAA+AGG | - | tig0015764:5891-5910 | Msa1356570:intron | 40.0% | |
| ACATTTGTGATGTCCTGATG+AGG | - | tig0015764:6128-6147 | Msa1356570:intron | 40.0% | |
| CAATTCCCATCATACAGCAA+AGG | + | tig0015764:6206-6225 | Msa1356570:intergenic | 40.0% | |
| CAAATGGATCATCACTCTTG+TGG | + | tig0015764:6252-6271 | Msa1356570:intergenic | 40.0% | |
| ATAGTATCTGTTCTGGTGCT+GGG | - | tig0015764:6278-6297 | Msa1356570:intron | 40.0% | |
| ! | TGCAGTTAGTTTCTTTCTGC+TGG | - | tig0015764:6573-6592 | Msa1356570:five_prime_UTR | 40.0% |
| TTGTCTCTCTCTTCTCTTCA+TGG | - | tig0015764:6603-6622 | Msa1356570:five_prime_UTR | 40.0% | |
| ! | TGGCTTCACCCTTAATTTGA+AGG | - | tig0015764:6623-6642 | Msa1356570:five_prime_UTR | 40.0% |
| GTTTCAGGAAGAACCAACGA+TGG | - | tig0015764:1981-2000 | Msa1356570:three_prime_UTR | 45.0% | |
| AGTAATGGCATCACCATCGT+TGG | + | tig0015764:1997-2016 | Msa1356570:intergenic | 45.0% | |
| ! | GCTGCACTTTTCATTCCCAA+TGG | - | tig0015764:2030-2049 | Msa1356570:three_prime_UTR | 45.0% |
| TGAGATGACCAAAGGAATGC+GGG | + | tig0015764:2084-2103 | Msa1356570:intergenic | 45.0% | |
| !!! | GTTTTGGTTCATCACAGGCA+TGG | - | tig0015764:2485-2504 | Msa1356570:intron | 45.0% |
| ! | CATGCCGGGGATAGATTTTT+CGG | - | tig0015764:2509-2528 | Msa1356570:intron | 45.0% |
| TGTTATCCCTCTGCTTTCCA+GGG | - | tig0015764:2589-2608 | Msa1356570:intron | 45.0% | |
| GATGGAACTCTGGATTACCA+GGG | + | tig0015764:2622-2641 | Msa1356570:intergenic | 45.0% | |
| TAATCCAGAGTTCCATCGTG+AGG | - | tig0015764:2625-2644 | Msa1356570:intron | 45.0% | |
| ! | CATTGTCTGAGATCCTGCAA+AGG | + | tig0015764:3037-3056 | Msa1356570:intergenic | 45.0% |
| CTTTGCAGGATCTCAGACAA+TGG | - | tig0015764:3035-3054 | Msa1356570:intron | 45.0% | |
| GTTTAAGAGAGAGGTAGGGA+GGG | + | tig0015764:3193-3212 | Msa1356570:intergenic | 45.0% | |
| AGTTTAAGAGAGAGGTAGGG+AGG | + | tig0015764:3194-3213 | Msa1356570:intergenic | 45.0% | |
| ATTTCAGGATCCTCTCGATC+TGG | - | tig0015764:3356-3375 | Msa1356570:intron | 45.0% | |
| !! | AATAGAAGTGCCAGATCGAG+AGG | + | tig0015764:3369-3388 | Msa1356570:intergenic | 45.0% |
| ! | CTGGCACTTCTATTTGTTGG+TGG | - | tig0015764:3375-3394 | Msa1356570:intron | 45.0% |
| AGCTCTTTCTCACTTGCTCA+AGG | - | tig0015764:3584-3603 | Msa1356570:intron | 45.0% | |
| ACCTGATTCAGGACAGCTAA+TGG | - | tig0015764:3652-3671 | Msa1356570:intron | 45.0% | |
| TCCATTAGCTGTCCTGAATC+AGG | + | tig0015764:3656-3675 | Msa1356570:intergenic | 45.0% | |
| GACACTCTGTTGTCATGAAC+AGG | - | tig0015764:3700-3719 | Msa1356570:intron | 45.0% | |
| TGTCAGATCCAACACTTCCA+TGG | - | tig0015764:3730-3749 | Msa1356570:intron | 45.0% | |
| ! | AGGAAATGCCATGGAAGTGT+TGG | + | tig0015764:3741-3760 | Msa1356570:intergenic | 45.0% |
| TGCATCAGAGGATGTGAACT+TGG | - | tig0015764:3769-3788 | Msa1356570:intron | 45.0% | |
| GAAGCCTGTGGAGATGATTT+AGG | - | tig0015764:3818-3837 | Msa1356570:intron | 45.0% | |
| ! | ATTGGCAACGTTGCTTTCCT+TGG | - | tig0015764:3842-3861 | Msa1356570:intron | 45.0% |
| TACAGGCCTATTTGACCAAG+AGG | - | tig0015764:4017-4036 | Msa1356570:CDS | 45.0% | |
| CATGCATGAGAACTCAGCAA+TGG | + | tig0015764:4178-4197 | Msa1356570:intergenic | 45.0% | |
| TGAGCTTATCAGCACTGTAG+AGG | - | tig0015764:4225-4244 | Msa1356570:intron | 45.0% | |
| ATCAGCACTGTAGAGGAATC+TGG | - | tig0015764:4232-4251 | Msa1356570:intron | 45.0% | |
| TCAGCACTGTAGAGGAATCT+GGG | - | tig0015764:4233-4252 | Msa1356570:intron | 45.0% | |
| ! | GCAGAAAGTACAACAGGGAA+TGG | - | tig0015764:4337-4356 | Msa1356570:CDS | 45.0% |
| ACCAATTCTACAGCCTGTGA+TGG | - | tig0015764:4364-4383 | Msa1356570:CDS | 45.0% | |
| TCCATCACAGGCTGTAGAAT+TGG | + | tig0015764:4368-4387 | Msa1356570:intergenic | 45.0% | |
| TACTCTGACACTCCTACGAT+CGG | - | tig0015764:4682-4701 | Msa1356570:CDS | 45.0% | |
| ACTCTTGTGTCTATGGTGTG+GGG | + | tig0015764:4792-4811 | Msa1356570:intergenic | 45.0% | |
| CAACTCTTGTGTCTATGGTG+TGG | + | tig0015764:4794-4813 | Msa1356570:intergenic | 45.0% | |
| AACTTCTAGCCACTATTGCG+TGG | - | tig0015764:5322-5341 | Msa1356570:CDS | 45.0% | |
| GGTGACTTACACGTGTCATA+CGG | - | tig0015764:5854-5873 | Msa1356570:intron | 45.0% | |
| GTGACTTACACGTGTCATAC+GGG | - | tig0015764:5855-5874 | Msa1356570:intron | 45.0% | |
| TGACACCCCAACAAGATTTG+AGG | - | tig0015764:6224-6243 | Msa1356570:intron | 45.0% | |
| GATAGTATCTGTTCTGGTGC+TGG | - | tig0015764:6277-6296 | Msa1356570:intron | 45.0% | |
| CAGAGTTGTGTCGTGTGGTT+TGG | - | tig0015764:1843-1862 | Msa1356570:three_prime_UTR | 50.0% | |
| ! | CTTTTCTATCTCCGCCCGTT+TGG | + | tig0015764:2284-2303 | Msa1356570:intergenic | 50.0% |
| GTGTTATCCCTCTGCTTTCC+AGG | - | tig0015764:2588-2607 | Msa1356570:intron | 50.0% | |
| GTTATCCCTCTGCTTTCCAG+GGG | - | tig0015764:2590-2609 | Msa1356570:intron | 50.0% | |
| CGATGGAACTCTGGATTACC+AGG | + | tig0015764:2623-2642 | Msa1356570:intergenic | 50.0% | |
| AGGCTATACTTGCCTCACGA+TGG | + | tig0015764:2640-2659 | Msa1356570:intergenic | 50.0% | |
| ATGCCGATGCACTCATTGAC+AGG | + | tig0015764:3487-3506 | Msa1356570:intergenic | 50.0% | |
| !! | TCTGGATTTGCTGAAGCCTG+TGG | - | tig0015764:3806-3825 | Msa1356570:intron | 50.0% |
| TGCCCATAGAGCAAGATCCA+AGG | + | tig0015764:3862-3881 | Msa1356570:intergenic | 50.0% | |
| GGCCTATTTGACCAAGAGGA+AGG | - | tig0015764:4021-4040 | Msa1356570:CDS | 50.0% | |
| AGGAAGGAAGAGAGCCACAA+AGG | - | tig0015764:4037-4056 | Msa1356570:CDS | 50.0% | |
| GGAAGGAAGAGAGCCACAAA+GGG | - | tig0015764:4038-4057 | Msa1356570:CDS | 50.0% | |
| CAGCACTGTAGAGGAATCTG+GGG | - | tig0015764:4234-4253 | Msa1356570:intron | 50.0% | |
| TATGAAGCACGGACACCTCT+AGG | - | tig0015764:4557-4576 | Msa1356570:CDS | 50.0% | |
| ! | TACGGGTGTCATAGGAGTGT+CGG | + | tig0015764:4619-4638 | Msa1356570:intergenic | 50.0% |
| AACACTCATACGAGCCGTGT+CGG | - | tig0015764:4721-4740 | Msa1356570:intron | 50.0% | |
| GGAAAGATGCCACGCAATAG+TGG | + | tig0015764:5334-5353 | Msa1356570:intergenic | 50.0% | |
| CTATTGCGTGGCATCTTTCC+TGG | - | tig0015764:5334-5353 | Msa1356570:CDS | 50.0% | |
| TGAAGGGCAACAGTTCTACC+AGG | + | tig0015764:5355-5374 | Msa1356570:intergenic | 50.0% | |
| GAACAGAACACCGTTCTGGT+GGG | + | tig0015764:5774-5793 | Msa1356570:intergenic | 50.0% | |
| ACACGAACAGAACACCGTTC+TGG | + | tig0015764:5778-5797 | Msa1356570:intergenic | 50.0% | |
| ! | ACACGTGTCATACGGGTTGT+TGG | - | tig0015764:5862-5881 | Msa1356570:intron | 50.0% |
| ! | CACGTGTCATACGGGTTGTT+GGG | - | tig0015764:5863-5882 | Msa1356570:intron | 50.0% |
| ! | GGTGTCTTTGCTTCTGAGAG+TGG | - | tig0015764:5912-5931 | Msa1356570:intron | 50.0% |
| ! | ATCGGGCCTTTGCTGTATGA+TGG | - | tig0015764:6197-6216 | Msa1356570:intron | 50.0% |
| ! | TCGGGCCTTTGCTGTATGAT+GGG | - | tig0015764:6198-6217 | Msa1356570:intron | 50.0% |
| TGGCGCCTCAAATCTTGTTG+GGG | + | tig0015764:6232-6251 | Msa1356570:intergenic | 50.0% | |
| GTGGCGCCTCAAATCTTGTT+GGG | + | tig0015764:6233-6252 | Msa1356570:intergenic | 50.0% | |
| TGTGGCGCCTCAAATCTTGT+TGG | + | tig0015764:6234-6253 | Msa1356570:intergenic | 50.0% | |
| ACATCGTGAGATCTCGACCG+AGG | - | tig0015764:1820-1839 | Msa1356570:three_prime_UTR | 55.0% | |
| CACACGACACAACTCTGCCT+CGG | + | tig0015764:1840-1859 | Msa1356570:intergenic | 55.0% | |
| AGGAATGCGGGAACAGTGGA+GGG | + | tig0015764:2072-2091 | Msa1356570:intergenic | 55.0% | |
| AAGGAATGCGGGAACAGTGG+AGG | + | tig0015764:2073-2092 | Msa1356570:intergenic | 55.0% | |
| CCAAAGGAATGCGGGAACAG+TGG | + | tig0015764:2076-2095 | Msa1356570:intergenic | 55.0% | |
| CCACTGTTCCCGCATTCCTT+TGG | - | tig0015764:2073-2092 | Msa1356570:three_prime_UTR | 55.0% | |
| CATCACAGGCATGGTCATGC+CGG | - | tig0015764:2494-2513 | Msa1356570:intron | 55.0% | |
| ATCACAGGCATGGTCATGCC+GGG | - | tig0015764:2495-2514 | Msa1356570:intron | 55.0% | |
| CTCTTCCCCTGGAAAGCAGA+GGG | + | tig0015764:2598-2617 | Msa1356570:intergenic | 55.0% | |
| CTTGCCTCACGATGGAACTC+TGG | + | tig0015764:2632-2651 | Msa1356570:intergenic | 55.0% | |
| GGGAGGGATAGAACCCCAAT+AGG | + | tig0015764:3177-3196 | Msa1356570:intergenic | 55.0% | |
| GGATCTTGCTCTATGGGCAC+TGG | - | tig0015764:3863-3882 | Msa1356570:intron | 55.0% | |
| GTGGCTCTCTTCCTTCCTCT+TGG | + | tig0015764:4035-4054 | Msa1356570:intergenic | 55.0% | |
| AAGCTGGCAGACTCCATCAC+AGG | + | tig0015764:4380-4399 | Msa1356570:intergenic | 55.0% | |
| TCGCGGTGTCTGACATGTGT+CGG | - | tig0015764:4590-4609 | Msa1356570:CDS | 55.0% | |
| ! | ACGTGTCGTACGGGTGTCAT+AGG | + | tig0015764:4627-4646 | Msa1356570:intergenic | 55.0% |
| GTCTGTGTCAGTGTCGTGTC+AGG | - | tig0015764:5014-5033 | Msa1356570:intron | 55.0% | |
| GTCGTGTCAGGTGTCTGTGT+TGG | - | tig0015764:5026-5045 | Msa1356570:intron | 55.0% | |
| ! | GTTGTCGCTTCCCACCAGAA+CGG | - | tig0015764:5761-5780 | Msa1356570:intron | 55.0% |
| CGAACAGAACACCGTTCTGG+TGG | + | tig0015764:5775-5794 | Msa1356570:intergenic | 55.0% | |
| TCTGAGAGTGGTCCTCCACT+TGG | - | tig0015764:5924-5943 | Msa1356570:intron | 55.0% | |
| CGAGGCAGAGTTGTGTCGTG+TGG | - | tig0015764:1838-1857 | Msa1356570:three_prime_UTR | 60.0% | |
| TCACAGGCATGGTCATGCCG+GGG | - | tig0015764:2496-2515 | Msa1356570:intron | 60.0% | |
| CCTCTTCCCCTGGAAAGCAG+AGG | + | tig0015764:2599-2618 | Msa1356570:intergenic | 60.0% | |
| CCTCTGCTTTCCAGGGGAAG+AGG | - | tig0015764:2596-2615 | Msa1356570:intron | 60.0% | |
| ATTACCAGGGCCTCTTCCCC+TGG | + | tig0015764:2609-2628 | Msa1356570:intergenic | 60.0% | |
| !! | GCACGGACACCTCTAGGACT+AGG | - | tig0015764:4563-4582 | Msa1356570:CDS | 60.0% |
| !! | CTCTAGGACTAGGCGTGTCG+CGG | - | tig0015764:4573-4592 | Msa1356570:CDS | 60.0% |
| CGGTACGACACGTGTCGTAC+GGG | + | tig0015764:4636-4655 | Msa1356570:intergenic | 60.0% | |
| CCGGTACGACACGTGTCGTA+CGG | + | tig0015764:4637-4656 | Msa1356570:intergenic | 60.0% | |
| CCGTACGACACGTGTCGTAC+CGG | - | tig0015764:4634-4653 | Msa1356570:CDS | 60.0% | |
| !! | AGGTGTCGGACACCGATCGT+AGG | + | tig0015764:4697-4716 | Msa1356570:intergenic | 60.0% |
| CTTTCCAGGGGAAGAGGCCC+TGG | - | tig0015764:2602-2621 | Msa1356570:intron | 65.0% | |
| CGCGACACGCCTAGTCCTAG+AGG | + | tig0015764:4575-4594 | Msa1356570:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0015764 | gene | 1781 | 6655 | 1781 | ID=Msa1356570;Name=Msa1356570 |
| tig0015764 | mRNA | 1781 | 6655 | 1781 | ID=Msa1356570-mRNA-1;Parent=Msa1356570;Name=Msa1356570-mRNA-1;_AED=0.14;_eAED=0.14;_QI=133|1|1|1|0.75|0.77|9|395|318 |
| tig0015764 | exon | 1781 | 2265 | 1781 | ID=Msa1356570-mRNA-1:exon:9997;Parent=Msa1356570-mRNA-1 |
| tig0015764 | exon | 4007 | 4224 | 4007 | ID=Msa1356570-mRNA-1:exon:9996;Parent=Msa1356570-mRNA-1 |
| tig0015764 | exon | 4306 | 4414 | 4306 | ID=Msa1356570-mRNA-1:exon:9995;Parent=Msa1356570-mRNA-1 |
| tig0015764 | exon | 4514 | 4714 | 4514 | ID=Msa1356570-mRNA-1:exon:9994;Parent=Msa1356570-mRNA-1 |
| tig0015764 | exon | 4831 | 4893 | 4831 | ID=Msa1356570-mRNA-1:exon:9993;Parent=Msa1356570-mRNA-1 |
| tig0015764 | exon | 5035 | 5094 | 5035 | ID=Msa1356570-mRNA-1:exon:9992;Parent=Msa1356570-mRNA-1 |
| tig0015764 | exon | 5291 | 5393 | 5291 | ID=Msa1356570-mRNA-1:exon:9991;Parent=Msa1356570-mRNA-1 |
| tig0015764 | exon | 6324 | 6448 | 6324 | ID=Msa1356570-mRNA-1:exon:9990;Parent=Msa1356570-mRNA-1 |
| tig0015764 | exon | 6535 | 6655 | 6535 | ID=Msa1356570-mRNA-1:exon:9989;Parent=Msa1356570-mRNA-1 |
| tig0015764 | five_prime_UTR | 6535 | 6655 | 6535 | ID=Msa1356570-mRNA-1:five_prime_utr;Parent=Msa1356570-mRNA-1 |
| tig0015764 | five_prime_UTR | 6437 | 6448 | 6437 | ID=Msa1356570-mRNA-1:five_prime_utr;Parent=Msa1356570-mRNA-1 |
| tig0015764 | CDS | 6324 | 6436 | 6324 | ID=Msa1356570-mRNA-1:cds;Parent=Msa1356570-mRNA-1 |
| tig0015764 | CDS | 5291 | 5393 | 5291 | ID=Msa1356570-mRNA-1:cds;Parent=Msa1356570-mRNA-1 |
| tig0015764 | CDS | 5035 | 5094 | 5035 | ID=Msa1356570-mRNA-1:cds;Parent=Msa1356570-mRNA-1 |
| tig0015764 | CDS | 4831 | 4893 | 4831 | ID=Msa1356570-mRNA-1:cds;Parent=Msa1356570-mRNA-1 |
| tig0015764 | CDS | 4514 | 4714 | 4514 | ID=Msa1356570-mRNA-1:cds;Parent=Msa1356570-mRNA-1 |
| tig0015764 | CDS | 4306 | 4414 | 4306 | ID=Msa1356570-mRNA-1:cds;Parent=Msa1356570-mRNA-1 |
| tig0015764 | CDS | 4007 | 4224 | 4007 | ID=Msa1356570-mRNA-1:cds;Parent=Msa1356570-mRNA-1 |
| tig0015764 | CDS | 2176 | 2265 | 2176 | ID=Msa1356570-mRNA-1:cds;Parent=Msa1356570-mRNA-1 |
| tig0015764 | three_prime_UTR | 1781 | 2175 | 1781 | ID=Msa1356570-mRNA-1:three_prime_utr;Parent=Msa1356570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
