AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0144360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0144360 MtrunA17_Chr1g0161371 99.666 599 2 0 1 599 1 599 0.0 1204
Msa0144360 MtrunA17_Chr8g0344311 87.769 605 65 4 1 599 1 602 0.0 996
Msa0144360 MtrunA17_Chr8g0391771 82.947 604 98 2 1 599 1 604 0.0 983
Msa0144360 MtrunA17_Chr2g0290411 48.073 545 257 8 52 582 13 545 5.43e-147 436
Msa0144360 MtrunA17_Chr4g0076251 48.785 535 249 6 51 568 25 551 2.77e-146 434
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0144360 AT1G68060.1 75.490 612 123 9 1 592 1 605 0.0 892
Msa0144360 AT1G24764.1 74.038 624 134 8 1 599 1 621 0.0 887
Msa0144360 AT1G24764.3 74.038 624 134 8 1 599 60 680 0.0 884
Msa0144360 AT1G14840.1 73.077 598 144 9 9 599 5 592 0.0 820
Msa0144360 AT2G01750.1 74.660 588 133 9 21 599 37 617 0.0 818
Msa0144360 AT2G01750.2 74.617 587 133 9 21 598 37 616 0.0 817
Msa0144360 AT1G14840.2 70.736 598 143 10 9 599 5 577 0.0 779
Msa0144360 AT1G24764.2 78.981 471 93 4 132 599 1 468 0.0 742
Msa0144360 AT4G17220.1 47.104 518 234 9 52 566 6 486 1.89e-135 405

Find 147 sgRNAs with CRISPR-Local

Find 358 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGAGGCGGATGATAAT+TGG 0.234084 1_4:-3813132 Msa0144360:CDS
TGGTTCTGAGCACTGTTTAC+AGG 0.234770 1_4:+3812692 None:intergenic
CGAAGCAATTCTTGCTCCTT+TGG 0.241876 1_4:-3814601 Msa0144360:CDS
CTTTGGTTTCTTCGAGAGAT+TGG 0.277319 1_4:+3813155 None:intergenic
TTCAAGTAGTGCAGCTTCTT+TGG 0.279011 1_4:+3814378 None:intergenic
TTCTAGCTCCCTCACAGTTT+GGG 0.281893 1_4:+3814092 None:intergenic
GCTCAGAACCAGCTAATTTC+TGG 0.284801 1_4:-3812680 Msa0144360:CDS
TGCCTCAACTTCCATGGCTT+TGG 0.286023 1_4:+3812820 None:intergenic
CTTCTAGCTCCCTCACAGTT+TGG 0.287805 1_4:+3814091 None:intergenic
ATCATCCGCCTCTCTCTCTT+TGG 0.291625 1_4:+3813138 None:intergenic
ATCTCAAAATTAACCTCTAA+TGG 0.292039 1_4:-3813343 Msa0144360:CDS
TACCCTGTTTGCTGTTACCT+TGG 0.315274 1_4:+3813869 None:intergenic
TGAGGGGATGGTGTTCTCTT+AGG 0.322150 1_4:+3813313 None:intergenic
TCTCTAAACGATCCAGAAAA+TGG 0.341450 1_4:+3818171 None:intergenic
TAGTGCAGCTTCTTTGGATT+TGG 0.342185 1_4:+3814384 None:intergenic
CTGAGTGATTGTGACTTGTT+TGG 0.344504 1_4:+3818551 None:intergenic
CTTAGGCAAGAATCCATTAG+AGG 0.344932 1_4:+3813330 None:intergenic
GATAATTGGAAAGGAAATTC+AGG 0.351491 1_4:-3813118 Msa0144360:CDS
AAAGCGGTTCAGCAATATAA+AGG 0.353628 1_4:-3812717 Msa0144360:CDS
TCAATATTGAGCTAGATGAT+AGG 0.359640 1_4:+3813278 None:intergenic
ATCATCCACCATGGAGGCCT+TGG 0.362971 1_4:+3814327 None:intergenic
CTAGAAGAGTCAGTCCTTGC+AGG 0.368346 1_4:-3814075 Msa0144360:CDS
TTCTGCTAGACAGCAGAGTA+TGG 0.375230 1_4:-3818121 Msa0144360:CDS
CAGTGAAAGTGGAGCTTAAT+CGG 0.377411 1_4:-3818059 Msa0144360:CDS
TCAGGAAGAAAACAAAATCT+TGG 0.381761 1_4:-3814157 Msa0144360:intron
TGAAGAACGACGATTCTTGC+AGG 0.385019 1_4:-3813781 Msa0144360:intron
CATGAATTTGTTGCACGGTT+CGG 0.387547 1_4:-3818085 Msa0144360:CDS
TCTGCCGGTGGGAAGTCATT+TGG 0.398268 1_4:+3813088 None:intergenic
CTTCTTTGCCTCAACTTCCA+TGG 0.400320 1_4:+3812814 None:intergenic
AGATAAGGATAGAGAATTAT+CGG 0.413036 1_4:-3817923 Msa0144360:CDS
TGAGTGATTGTGACTTGTTT+GGG 0.421702 1_4:+3818552 None:intergenic
GTGCCAAGGTAACAGCAAAC+AGG 0.425792 1_4:-3813872 Msa0144360:CDS
GAAGAGCTGTCAAAGGTTGA+TGG 0.434615 1_4:-3814867 Msa0144360:CDS
TGCCTTGGCCAAGGCCTCCA+TGG 0.436711 1_4:-3814335 Msa0144360:CDS
ACGGCGATGGAGGAGATTTA+CGG 0.436994 1_4:-3818222 Msa0144360:exon
TCTTCAAGCCATTGTTTGAC+AGG 0.443112 1_4:+3813798 None:intergenic
AGCAATTCTTGCTCCTTTGG+AGG 0.447816 1_4:-3814598 Msa0144360:CDS
TCAATTGCGGCTCAAAGTGC+TGG 0.456627 1_4:-3813473 Msa0144360:CDS
ATATGACCTCTTGCAGAAAG+AGG 0.460005 1_4:-3813038 Msa0144360:CDS
TGTTCAGTTTGCCTTGGCCA+AGG 0.461756 1_4:-3814344 Msa0144360:CDS
TATCAACTCCACCTAGTGAT+TGG 0.463068 1_4:+3813368 None:intergenic
CGGAGGAGCGGTGGCGACTC+CGG 0.465713 1_4:-3818196 Msa0144360:CDS
TTTACCTTCCAGAAATTAGC+TGG 0.469895 1_4:+3812672 None:intergenic
CGATTAAGCTCCACTTTCAC+TGG 0.472787 1_4:+3818060 None:intergenic
TTGAGGCAAAGAAGATGAGA+AGG 0.474623 1_4:-3812805 Msa0144360:CDS
AAGTGCTGGAGGAGAGTTTG+AGG 0.474656 1_4:-3813459 Msa0144360:CDS
AAAACACTTAATAGAGAGTT+GGG 0.481831 1_4:-3813897 Msa0144360:CDS
TGATGGGAAGCTAAAATTAA+CGG 0.487466 1_4:-3814850 Msa0144360:CDS
ATAGGGATGACCTGAGTTGA+GGG 0.487512 1_4:+3813296 None:intergenic
AAAGACTGTTCAGTTTGCCT+TGG 0.487825 1_4:-3814350 Msa0144360:CDS
GGTTCTGAGCACTGTTTACA+GGG 0.494170 1_4:+3812693 None:intergenic
CTGTCAGATGTTAGCAAGGA+AGG 0.496607 1_4:-3812855 Msa0144360:intron
CACCATGGAGGCCTTGGCCA+AGG 0.496680 1_4:+3814333 None:intergenic
TGATGAAAAGAAAGCATCAA+TGG 0.497269 1_4:-3814697 Msa0144360:CDS
CTGTTGTGGTTGCAAATGAA+TGG 0.501031 1_4:-3813845 Msa0144360:CDS
GTCGTTGCCTTGAGGAAAGC+TGG 0.505078 1_4:-3813016 Msa0144360:CDS
GGAAGTAGCTTCCATGGAAA+AGG 0.509920 1_4:-3812783 Msa0144360:CDS
CAATATTGAGCTAGATGATA+GGG 0.513491 1_4:+3813279 None:intergenic
AAACTAAACACTAACCTCAA+TGG 0.514146 1_4:+3812955 None:intergenic
TCAATATTGAGGAGTGCTAA+AGG 0.517695 1_4:-3813265 Msa0144360:CDS
TGAGGCAAAGAAGATGAGAA+GGG 0.522446 1_4:-3812804 Msa0144360:CDS
TGATGGTGGCTCAAGGACAC+TGG 0.523950 1_4:-3813227 Msa0144360:CDS
GACACTGGAAAGAAGTAAAA+CGG 0.525209 1_4:-3813212 Msa0144360:CDS
AAGCGGTTCAGCAATATAAA+GGG 0.526321 1_4:-3812716 Msa0144360:CDS
GAGAAGGGAAGTAGCTTCCA+TGG 0.527885 1_4:-3812789 Msa0144360:CDS
TCTTCTCGTCGCCAATCACT+AGG 0.528739 1_4:-3813379 Msa0144360:CDS
GAATTTGAATGCGCGAGTGA+GGG 0.529120 1_4:-3818260 Msa0144360:five_prime_UTR
AGCAAACAGGGTAGCTGTTG+TGG 0.529953 1_4:-3813859 Msa0144360:CDS
CGGTTCGGATCCAGTGAAAG+TGG 0.533833 1_4:-3818070 Msa0144360:CDS
GAGGGTCCATGCTGCTCAGA+AGG 0.534386 1_4:-3814643 Msa0144360:CDS
GGACAGAATGCATAGACAAA+AGG 0.539722 1_4:-3814136 Msa0144360:CDS
TATCATCTAGCTCAATATTG+AGG 0.541720 1_4:-3813276 Msa0144360:CDS
GAAACAGATTGAGATTTGCC+AGG 0.542161 1_4:-3814278 Msa0144360:intron
TTGCAGCAGAAGCTACTCTT+CGG 0.548174 1_4:-3814665 Msa0144360:CDS
TTGCTGCTGCACCACCTGCA+AGG 0.548940 1_4:+3814061 None:intergenic
TCGTTTCAGATCGACGGCGA+TGG 0.553339 1_4:-3818235 Msa0144360:exon
TGGTTGAATGAGTAACTTTG+AGG 0.553498 1_4:+3813175 None:intergenic
AAGAGCTGTCAAAGGTTGAT+GGG 0.554635 1_4:-3814866 Msa0144360:CDS
AACGATCCAGAAAATGGTGC+CGG 0.555391 1_4:+3818177 None:intergenic
AGATAAAGATGATGCCATTG+AGG 0.555603 1_4:-3812969 Msa0144360:intron
AGTAGTCGCAGCACCGCAGA+GGG 0.555775 1_4:-3813421 Msa0144360:CDS
TGTTTGCTGTTACCTTGGCA+CGG 0.558804 1_4:+3813874 None:intergenic
AGCTTTAGTTCAGCCTCCAA+AGG 0.559013 1_4:+3814585 None:intergenic
AGGCTGAACTAAAGCTTGCT+CGG 0.559493 1_4:-3814578 Msa0144360:CDS
GCATAGACAAAAGGTGGCAG+AGG 0.560586 1_4:-3814127 Msa0144360:CDS
AAGAAGTAAAACGGTGCTGA+GGG 0.563039 1_4:-3813203 Msa0144360:CDS
AGGGTTTCGTTTCAGATCGA+CGG 0.563160 1_4:-3818241 Msa0144360:five_prime_UTR
GATAGGGATGACCTGAGTTG+AGG 0.563988 1_4:+3813295 None:intergenic
GCTGTCTGAAGAGCTGTCAA+AGG 0.567280 1_4:-3814874 Msa0144360:CDS
TAGAGAGTTGGGCCGTGCCA+AGG 0.567676 1_4:-3813886 Msa0144360:CDS
ATACTATCCTCTGTATCTGC+CGG 0.568717 1_4:+3813073 None:intergenic
GGAGCAAGAATTGCTTCGAT+CGG 0.572832 1_4:+3814606 None:intergenic
CGAAGAAACCAAAGAGAGAG+AGG 0.576139 1_4:-3813146 Msa0144360:CDS
AGAATTTGAATGCGCGAGTG+AGG 0.579102 1_4:-3818261 Msa0144360:five_prime_UTR
GAACACCATCCCCTCAACTC+AGG 0.581720 1_4:-3813306 Msa0144360:CDS
AGTGCTGGAGGAGAGTTTGA+GGG 0.584451 1_4:-3813458 Msa0144360:CDS
CAGCAGAAGCTACTCTTCGG+AGG 0.586254 1_4:-3814662 Msa0144360:CDS
GACCAAAGCCATGGAAGTTG+AGG 0.587168 1_4:-3812822 Msa0144360:CDS
CGGCTTGAGAATGAAGTTCG+AGG 0.589218 1_4:-3818039 Msa0144360:intron
GCAAGAATTGCTTCGATCGG+AGG 0.593352 1_4:+3814609 None:intergenic
TTCATGACCAGCTTTCCTCA+AGG 0.597013 1_4:+3813009 None:intergenic
CAACGACCTCTTTCTGCAAG+AGG 0.600338 1_4:+3813032 None:intergenic
CTATCCTCTGTATCTGCCGG+TGG 0.602400 1_4:+3813076 None:intergenic
CAGTAGTCGCAGCACCGCAG+AGG 0.603621 1_4:-3813422 Msa0144360:CDS
CATCATCCTTCTGAGCAGCA+TGG 0.604557 1_4:+3814637 None:intergenic
TTTCAGATCGACGGCGATGG+AGG 0.606162 1_4:-3818232 Msa0144360:exon
GTTCATACTTCTTCCCTCTG+CGG 0.608964 1_4:+3813408 None:intergenic
GATGACCTGAGTTGAGGGGA+TGG 0.611124 1_4:+3813301 None:intergenic
AAGCGTTGAGGCATTCTGAA+CGG 0.613362 1_4:-3817882 Msa0144360:CDS
CAGAATGCATAGACAAAAGG+TGG 0.613852 1_4:-3814133 Msa0144360:CDS
CTTCCCACCGGCAGATACAG+AGG 0.614204 1_4:-3813080 Msa0144360:CDS
CTTGGCCAAGGCCTCCATGG+TGG 0.617740 1_4:-3814332 Msa0144360:CDS
AAGAGGTCATATAAAACACT+TGG 0.618174 1_4:+3813049 None:intergenic
AGCAGAAGCTACTCTTCGGA+GGG 0.619468 1_4:-3814661 Msa0144360:CDS
ACTAAAGCTTGCTCGGCAAG+AGG 0.620295 1_4:-3814571 Msa0144360:intron
AAAGAAGTAAAACGGTGCTG+AGG 0.622180 1_4:-3813204 Msa0144360:CDS
TTACGGCGACGGAGGAGCGG+TGG 0.622998 1_4:-3818205 Msa0144360:CDS
AAGTCATGCCTGTCAAACAA+TGG 0.623263 1_4:-3813806 Msa0144360:CDS
GAGGCGGATGATAATTGGAA+AGG 0.624926 1_4:-3813127 Msa0144360:CDS
AGATACGTTGACCAAAGCCA+TGG 0.625101 1_4:-3812831 Msa0144360:CDS
AGAAAGAGGTCGTTGCCTTG+AGG 0.625269 1_4:-3813024 Msa0144360:CDS
GAGGAGATTTACGGCGACGG+AGG 0.631996 1_4:-3818213 Msa0144360:CDS
GTGCTGGAGGAGAGTTTGAG+GGG 0.632505 1_4:-3813457 Msa0144360:CDS
TTATCTGTCAGATGTTAGCA+AGG 0.633097 1_4:-3812859 Msa0144360:intron
AAAGCTCACCCAAACTGTGA+GGG 0.633154 1_4:-3814100 Msa0144360:CDS
GAGTTCATGAATTTGTTGCA+CGG 0.637392 1_4:-3818090 Msa0144360:CDS
AGTAGCTTCCATGGAAAAGG+AGG 0.639443 1_4:-3812780 Msa0144360:CDS
AGAACCAGCTAATTTCTGGA+AGG 0.641246 1_4:-3812676 Msa0144360:CDS
TGCCAAGGTAACAGCAAACA+GGG 0.644482 1_4:-3813871 Msa0144360:CDS
GATTTACGGCGACGGAGGAG+CGG 0.644818 1_4:-3818208 Msa0144360:CDS
ATGCAGTTAGAGATTATCAA+CGG 0.649753 1_4:-3814038 Msa0144360:CDS
TATCCTCTGTATCTGCCGGT+GGG 0.651445 1_4:+3813077 None:intergenic
GAAGAGTCAGTCCTTGCAGG+TGG 0.658177 1_4:-3814072 Msa0144360:CDS
AAAAGCTCACCCAAACTGTG+AGG 0.659214 1_4:-3814101 Msa0144360:CDS
ATGGAGGAGATTTACGGCGA+CGG 0.663204 1_4:-3818216 Msa0144360:CDS
AAGCTGAGATTAAAGCGTTG+AGG 0.667550 1_4:-3817894 Msa0144360:CDS
TAAGCCAAATGACTTCCCAC+CGG 0.676407 1_4:-3813092 Msa0144360:CDS
AGTTTGAGGGGAAATTCTAG+CGG 0.678639 1_4:-3813445 Msa0144360:CDS
TCTCGTCGCCAATCACTAGG+TGG 0.679433 1_4:-3813376 Msa0144360:CDS
AGAAACCAAAGAGAGAGAGG+CGG 0.681897 1_4:-3813143 Msa0144360:CDS
TTGGAGATCATCCACCATGG+AGG 0.683506 1_4:+3814321 None:intergenic
AGAACTTCGTCGAGAAGACG+CGG 0.686070 1_4:-3818144 Msa0144360:CDS
GAGGGAAGAAGTATGAACAA+TGG 0.689751 1_4:-3813403 Msa0144360:CDS
ATTGCGGCTCAAAGTGCTGG+AGG 0.694049 1_4:-3813470 Msa0144360:CDS
TACAAGAGAACAGAGCAAAG+CGG 0.698034 1_4:-3812733 Msa0144360:CDS
AGAAGTAAAACGGTGCTGAG+GGG 0.712185 1_4:-3813202 Msa0144360:CDS
TAGGGATGACCTGAGTTGAG+GGG 0.734547 1_4:+3813297 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAATTTTACTTAATTTTTTT+TGG - chr1_4:3813242-3813261 Msa0144360:CDS 10.0%
!! AAAAAAACATAATAAACAAA+TGG + chr1_4:3813638-3813657 None:intergenic 10.0%
!!! TTATGTTTTTTTTTTTTTTG+GGG - chr1_4:3813646-3813665 Msa0144360:intron 10.0%
!!! ATTATAACATTAATTTTACA+TGG - chr1_4:3817273-3817292 Msa0144360:intron 10.0%
!!! TATTAATTGTTTCTTTTTTT+TGG - chr1_4:3818288-3818307 Msa0144360:five_prime_UTR 10.0%
!!! ATTAATTGTTTCTTTTTTTT+GGG - chr1_4:3818289-3818308 Msa0144360:five_prime_UTR 10.0%
!!! TATATTTTTAATTATGCTCT+TGG - chr1_4:3814367-3814386 Msa0144360:CDS 15.0%
!!! TTCTCAATTGTTGTTATTTT+TGG - chr1_4:3813398-3813417 Msa0144360:CDS 20.0%
!! GTTACTATCTATGATATATA+TGG - chr1_4:3813455-3813474 Msa0144360:CDS 20.0%
!!! TCTTTTAGCATATCAAATAT+CGG + chr1_4:3814286-3814305 None:intergenic 20.0%
!!! AATCGTGTTATTCTTATTAA+AGG - chr1_4:3814679-3814698 Msa0144360:CDS 20.0%
!!! ATCGTGTTATTCTTATTAAA+GGG - chr1_4:3814680-3814699 Msa0144360:CDS 20.0%
!! AAAAAATATTTCCCCATAAT+AGG - chr1_4:3814997-3815016 Msa0144360:intron 20.0%
!! CAACACAACATTTAATATTT+GGG + chr1_4:3815477-3815496 None:intergenic 20.0%
!! TCAACACAACATTTAATATT+TGG + chr1_4:3815478-3815497 None:intergenic 20.0%
!! TAATTACTGAAGTTGAATTA+GGG + chr1_4:3816430-3816449 None:intergenic 20.0%
!! ATAATTACTGAAGTTGAATT+AGG + chr1_4:3816431-3816450 None:intergenic 20.0%
!! AATATAAACTCAAAAGAACA+AGG + chr1_4:3816681-3816700 None:intergenic 20.0%
!! TTATAATCAATAAAGCAACT+GGG + chr1_4:3817260-3817279 None:intergenic 20.0%
!!! ACTAGTTCTGAAATTATTTA+AGG - chr1_4:3817690-3817709 Msa0144360:intron 20.0%
!!! TGTTTGTTTTTGTGTAGATA+AGG - chr1_4:3813283-3813302 Msa0144360:CDS 25.0%
! AGATAAGGATAGAGAATTAT+CGG - chr1_4:3813298-3813317 Msa0144360:CDS 25.0%
! TAATCGCTAATTTACATGTT+GGG - chr1_4:3813866-3813885 Msa0144360:CDS 25.0%
!!! CATTTGTTTGTTTTAAGTGA+GGG - chr1_4:3814018-3814037 Msa0144360:intron 25.0%
! AAATTGCACAAAAATGTGAA+AGG + chr1_4:3814105-3814124 None:intergenic 25.0%
! GAAACTGTCTCATATAAATT+TGG - chr1_4:3814154-3814173 Msa0144360:CDS 25.0%
! ATTGAATTGAAATGCAGTAT+TGG - chr1_4:3814510-3814529 Msa0144360:intron 25.0%
! AATTAATGCTTCATAGGATT+TGG + chr1_4:3814612-3814631 None:intergenic 25.0%
! AAGTCTAATTAATGCTTCAT+AGG + chr1_4:3814618-3814637 None:intergenic 25.0%
! TGTTAACTTCTTGATACTAT+CGG - chr1_4:3814768-3814787 Msa0144360:intron 25.0%
! AATCTCAAGACTTGATTTAT+AGG + chr1_4:3814820-3814839 None:intergenic 25.0%
!!! TTCAACTGTTTTATTGTTAG+AGG - chr1_4:3814838-3814857 Msa0144360:CDS 25.0%
! AAGGAAAAAAATGGAAAGTT+AGG - chr1_4:3815149-3815168 Msa0144360:intron 25.0%
!! AAATGAAAAGCTTTGATATG+TGG - chr1_4:3815396-3815415 Msa0144360:intron 25.0%
!! AGTAAATTTTTCTTCTAAGC+TGG + chr1_4:3815437-3815456 None:intergenic 25.0%
!!! ATTTGGGTTGTATTATAGTT+TGG + chr1_4:3815461-3815480 None:intergenic 25.0%
! TGAATCATTGAAGTGAAATT+TGG - chr1_4:3815563-3815582 Msa0144360:intron 25.0%
! GAATCATTGAAGTGAAATTT+GGG - chr1_4:3815564-3815583 Msa0144360:intron 25.0%
!!! AAAAGATGAGAGTTTTGTAT+TGG - chr1_4:3815605-3815624 Msa0144360:intron 25.0%
!!! AAAGATGAGAGTTTTGTATT+GGG - chr1_4:3815606-3815625 Msa0144360:intron 25.0%
! TCTAATCTCTCCTAATTATT+TGG + chr1_4:3815736-3815755 None:intergenic 25.0%
! CTATCATTGAATTTGATTCA+TGG - chr1_4:3815766-3815785 Msa0144360:intron 25.0%
!!! TGTTTTCAAGAAGACTTAAA+TGG - chr1_4:3815907-3815926 Msa0144360:intron 25.0%
!!! TAGTTTTTGAGAAGATAGTA+AGG - chr1_4:3815938-3815957 Msa0144360:intron 25.0%
! ACTCCTAATCCTAAATAAAT+AGG - chr1_4:3815993-3816012 Msa0144360:intron 25.0%
! CTCCTAATCCTAAATAAATA+GGG - chr1_4:3815994-3816013 Msa0144360:intron 25.0%
!! TTCCCTATTTATTTAGGATT+AGG + chr1_4:3815999-3816018 None:intergenic 25.0%
! AAAGGTCAATGTCAAATAAA+CGG + chr1_4:3816202-3816221 None:intergenic 25.0%
! ACATGAAATGTAACTTATCT+TGG - chr1_4:3816304-3816323 Msa0144360:intron 25.0%
! CAGTAATTATTTGTGTTCTT+AGG - chr1_4:3816441-3816460 Msa0144360:intron 25.0%
! TAATTATTTGTGTTCTTAGG+TGG - chr1_4:3816444-3816463 Msa0144360:intron 25.0%
!! TGTAATCATGCAACTTTTAA+CGG - chr1_4:3817021-3817040 Msa0144360:intron 25.0%
! GTTATAATCAATAAAGCAAC+TGG + chr1_4:3817261-3817280 None:intergenic 25.0%
! TGGTTTATTTCACATTCTTT+AGG - chr1_4:3817293-3817312 Msa0144360:intron 25.0%
! AAAAACACTTAATAGAGAGT+TGG - chr1_4:3817323-3817342 Msa0144360:intron 25.0%
! AAAACACTTAATAGAGAGTT+GGG - chr1_4:3817324-3817343 Msa0144360:intron 25.0%
! TTATTGAACTGCATTCTTAT+AGG - chr1_4:3817561-3817580 Msa0144360:intron 25.0%
! TATTGAACTGCATTCTTATA+GGG - chr1_4:3817562-3817581 Msa0144360:intron 25.0%
! TTCAGGAAAAATATCAATTG+CGG - chr1_4:3817735-3817754 Msa0144360:intron 25.0%
! ATCTCAAAATTAACCTCTAA+TGG - chr1_4:3817878-3817897 Msa0144360:CDS 25.0%
! CAATTATCAATAAGATGTCA+AGG + chr1_4:3818322-3818341 None:intergenic 25.0%
! TGTTTTCTCTCTCTAGATTA+AGG + chr1_4:3812809-3812828 None:intergenic 30.0%
AATTCAGCTGAAAAACTCTT+CGG + chr1_4:3813227-3813246 None:intergenic 30.0%
TAACTTATGTCTGTAAGACT+TGG - chr1_4:3813702-3813721 Msa0144360:intron 30.0%
GTAATCGCTAATTTACATGT+TGG - chr1_4:3813865-3813884 Msa0144360:CDS 30.0%
AGGAATTGAGCTTGTAAATA+TGG - chr1_4:3813900-3813919 Msa0144360:CDS 30.0%
!! GGTACTATTATTTTGTTTCC+TGG - chr1_4:3813921-3813940 Msa0144360:intron 30.0%
!! ACTATTATTTTGTTTCCTGG+TGG - chr1_4:3813924-3813943 Msa0144360:intron 30.0%
!! CTATTATTTTGTTTCCTGGT+GGG - chr1_4:3813925-3813944 Msa0144360:intron 30.0%
CCTCACTTAAAACAAACAAA+TGG + chr1_4:3814020-3814039 None:intergenic 30.0%
!!! CCATTTGTTTGTTTTAAGTG+AGG - chr1_4:3814017-3814036 Msa0144360:intron 30.0%
TATCGATGCAAATGTCAAAA+GGG + chr1_4:3814069-3814088 None:intergenic 30.0%
ACTGAGAAACTTTCCTTATA+TGG + chr1_4:3814234-3814253 None:intergenic 30.0%
CCAAAGTAAGTCAATATAAC+AGG + chr1_4:3814405-3814424 None:intergenic 30.0%
!! CCTGTTATATTGACTTACTT+TGG - chr1_4:3814402-3814421 Msa0144360:CDS 30.0%
GAACCAATACAAAAAGATGA+TGG + chr1_4:3815047-3815066 None:intergenic 30.0%
!!! CATCTTTTTGTATTGGTTCT+CGG - chr1_4:3815048-3815067 Msa0144360:intron 30.0%
AAAAATGGAAAGTTAGGACA+TGG - chr1_4:3815155-3815174 Msa0144360:intron 30.0%
! GAAAATTTAAAGAGAGCGTA+TGG - chr1_4:3815213-3815232 Msa0144360:intron 30.0%
! TCAATTTTCACCTCAAAACT+AGG + chr1_4:3815268-3815287 None:intergenic 30.0%
GTCTCTATCATATGTATAGT+GGG + chr1_4:3815329-3815348 None:intergenic 30.0%
TGTCTCTATCATATGTATAG+TGG + chr1_4:3815330-3815349 None:intergenic 30.0%
TAAACTAGAAGATACAAGCA+AGG - chr1_4:3815360-3815379 Msa0144360:intron 30.0%
AGGAAACTAGCAAATTAGTA+GGG + chr1_4:3815866-3815885 None:intergenic 30.0%
AAGGAAACTAGCAAATTAGT+AGG + chr1_4:3815867-3815886 None:intergenic 30.0%
TCTCATTTACTCAAAGACTA+AGG + chr1_4:3815886-3815905 None:intergenic 30.0%
GTCTTATATCCCTATACATA+GGG + chr1_4:3815975-3815994 None:intergenic 30.0%
! AGTCTTATATCCCTATACAT+AGG + chr1_4:3815976-3815995 None:intergenic 30.0%
CCTGATTTCCCTATTTATTT+AGG + chr1_4:3816005-3816024 None:intergenic 30.0%
CCTAAATAAATAGGGAAATC+AGG - chr1_4:3816002-3816021 Msa0144360:intron 30.0%
AAAAAGTTTACGCATGATAG+AGG + chr1_4:3816227-3816246 None:intergenic 30.0%
TGATGGGAAGCTAAAATTAA+CGG - chr1_4:3816371-3816390 Msa0144360:intron 30.0%
!! TGATGAAAAGAAAGCATCAA+TGG - chr1_4:3816524-3816543 Msa0144360:intron 30.0%
TGAGTTTATATTGCAATACC+TGG - chr1_4:3816689-3816708 Msa0144360:intron 30.0%
! GGCATATGACTAATGATTTT+TGG - chr1_4:3816742-3816761 Msa0144360:intron 30.0%
TTGTAGTTTAGCAATCTGTA+GGG + chr1_4:3816789-3816808 None:intergenic 30.0%
!! TCAGCTCTTGATTTTTGTTT+TGG + chr1_4:3816922-3816941 None:intergenic 30.0%
TCAGGAAGAAAACAAAATCT+TGG - chr1_4:3817064-3817083 Msa0144360:intron 30.0%
ATGCAGTTAGAGATTATCAA+CGG - chr1_4:3817183-3817202 Msa0144360:intron 30.0%
ATTTAGGTGAAGACAAAGAA+AGG + chr1_4:3817527-3817546 None:intergenic 30.0%
ATTGAACTGCATTCTTATAG+GGG - chr1_4:3817563-3817582 Msa0144360:intron 30.0%
!!! AATTTCAGAACTAGTTTTCG+AGG + chr1_4:3817685-3817704 None:intergenic 30.0%
CAATATTGAGCTAGATGATA+GGG + chr1_4:3817945-3817964 None:intergenic 30.0%
TCAATATTGAGCTAGATGAT+AGG + chr1_4:3817946-3817965 None:intergenic 30.0%
! TATCATCTAGCTCAATATTG+AGG - chr1_4:3817945-3817964 Msa0144360:intron 30.0%
! GGAACATCTAAATCTTTTGA+TGG - chr1_4:3817977-3817996 Msa0144360:intron 30.0%
! ACATCTAAATCTTTTGATGG+TGG - chr1_4:3817980-3817999 Msa0144360:intron 30.0%
GATAATTGGAAAGGAAATTC+AGG - chr1_4:3818103-3818122 Msa0144360:CDS 30.0%
AAGAGGTCATATAAAACACT+TGG + chr1_4:3818175-3818194 None:intergenic 30.0%
! TGGCATCATCTTTATCTTTT+AGG + chr1_4:3818249-3818268 None:intergenic 30.0%
AAACTAAACACTAACCTCAA+TGG + chr1_4:3818269-3818288 None:intergenic 30.0%
!! TGAGTGATTGTGACTTGTTT+GGG + chr1_4:3812672-3812691 None:intergenic 35.0%
TCTCTAAACGATCCAGAAAA+TGG + chr1_4:3813053-3813072 None:intergenic 35.0%
! TTTTCTGGATCGTTTAGAGA+AGG - chr1_4:3813053-3813072 Msa0144360:CDS 35.0%
!! GAGTTCATGAATTTGTTGCA+CGG - chr1_4:3813131-3813150 Msa0144360:CDS 35.0%
TTCAATGTAATCCCATGTGT+CGG - chr1_4:3813535-3813554 Msa0144360:intron 35.0%
!! AATGCTGAGATTTGTTAGGT+TGG - chr1_4:3813744-3813763 Msa0144360:intron 35.0%
!!! GTTAGGTTGGATATTTTTCG+TGG - chr1_4:3813757-3813776 Msa0144360:intron 35.0%
AAAAACTCACACACACACAA+GGG + chr1_4:3813808-3813827 None:intergenic 35.0%
TAAAAACTCACACACACACA+AGG + chr1_4:3813809-3813828 None:intergenic 35.0%
! TTGTGTGTGTGTGAGTTTTT+AGG - chr1_4:3813808-3813827 Msa0144360:CDS 35.0%
GCAACTTCAAAGTTCAAACA+TGG + chr1_4:3813972-3813991 None:intergenic 35.0%
TTGAAGTTGCAGCTGAAAAA+TGG - chr1_4:3813982-3814001 Msa0144360:intron 35.0%
TGAAGTTGCAGCTGAAAAAT+GGG - chr1_4:3813983-3814002 Msa0144360:intron 35.0%
!!! TTGTTTGTTTTAAGTGAGGG+AGG - chr1_4:3814021-3814040 Msa0144360:CDS 35.0%
!!! TGTTTGTTTTAAGTGAGGGA+GGG - chr1_4:3814022-3814041 Msa0144360:CDS 35.0%
ATCGATGCAAATGTCAAAAG+GGG + chr1_4:3814068-3814087 None:intergenic 35.0%
! GTATCGATGCAAATGTCAAA+AGG + chr1_4:3814070-3814089 None:intergenic 35.0%
!! TGTGTTGACTTGACCATATA+AGG - chr1_4:3814218-3814237 Msa0144360:intron 35.0%
GCATATCAAATATCGGACAA+TGG + chr1_4:3814279-3814298 None:intergenic 35.0%
AGGGAGGATAAAGGAATAAA+AGG + chr1_4:3814707-3814726 None:intergenic 35.0%
TTTATTCCTTTATCCTCCCT+TGG - chr1_4:3814707-3814726 Msa0144360:CDS 35.0%
! TTGCATTCACTCTTAGTTCT+AGG - chr1_4:3814741-3814760 Msa0144360:intron 35.0%
GTTGTGCTTGTATAGAGAAA+AGG - chr1_4:3814940-3814959 Msa0144360:intron 35.0%
! GAGCCATCATCTTTTTGTAT+TGG - chr1_4:3815041-3815060 Msa0144360:intron 35.0%
GCTAATTGTTCCTATCTAAG+AGG - chr1_4:3815074-3815093 Msa0144360:intron 35.0%
! TGACACAATGAATGCTTTTG+TGG - chr1_4:3815100-3815119 Msa0144360:intron 35.0%
! TGATATAGTCTTAGAGTGCA+CGG - chr1_4:3815124-3815143 Msa0144360:intron 35.0%
!!! ACTCACAAATCCTAGTTTTG+AGG - chr1_4:3815255-3815274 Msa0144360:intron 35.0%
!! AAAGGTACTTAAGAGACATG+TGG + chr1_4:3815304-3815323 None:intergenic 35.0%
!! TCATATGTATAGTGGGCAAA+AGG + chr1_4:3815322-3815341 None:intergenic 35.0%
! TTGAGATGAGAGTCTTATGA+TGG - chr1_4:3815535-3815554 Msa0144360:intron 35.0%
! GTTTTGTATTGGGTCTTACT+TGG - chr1_4:3815616-3815635 Msa0144360:intron 35.0%
TATTGGGTCTTACTTGGTTT+GGG - chr1_4:3815622-3815641 Msa0144360:intron 35.0%
AAGCCACAGACCAAATAATT+AGG - chr1_4:3815723-3815742 Msa0144360:intron 35.0%
TCTCCTAATTATTTGGTCTG+TGG + chr1_4:3815729-3815748 None:intergenic 35.0%
TGATTCATGGCAAGACATTA+TGG - chr1_4:3815779-3815798 Msa0144360:intron 35.0%
TAAACCCTAACCCTATGTAT+AGG - chr1_4:3815962-3815981 Msa0144360:intron 35.0%
AAACCCTAACCCTATGTATA+GGG - chr1_4:3815963-3815982 Msa0144360:intron 35.0%
TATCCCTATACATAGGGTTA+GGG + chr1_4:3815969-3815988 None:intergenic 35.0%
ATATCCCTATACATAGGGTT+AGG + chr1_4:3815970-3815989 None:intergenic 35.0%
CATTAGTCATATGCCAGATT+CGG + chr1_4:3816737-3816756 None:intergenic 35.0%
CTTGTAGTTTAGCAATCTGT+AGG + chr1_4:3816790-3816809 None:intergenic 35.0%
! AATCATGCAACTTTTAACGG+AGG - chr1_4:3817024-3817043 Msa0144360:intron 35.0%
GTTTCATCATCACTTCTTTC+AGG - chr1_4:3817046-3817065 Msa0144360:intron 35.0%
AATGAGTGCAAGCAGTATTT+AGG + chr1_4:3817543-3817562 None:intergenic 35.0%
TTGAACTGCATTCTTATAGG+GGG - chr1_4:3817564-3817583 Msa0144360:intron 35.0%
!! GTTTTCGAGGTTAACAGATA+GGG + chr1_4:3817672-3817691 None:intergenic 35.0%
!! AGTTTTCGAGGTTAACAGAT+AGG + chr1_4:3817673-3817692 None:intergenic 35.0%
!! TCAATATTGAGGAGTGCTAA+AGG - chr1_4:3817956-3817975 Msa0144360:intron 35.0%
GACACTGGAAAGAAGTAAAA+CGG - chr1_4:3818009-3818028 Msa0144360:intron 35.0%
TGGTTGAATGAGTAACTTTG+AGG + chr1_4:3818049-3818068 None:intergenic 35.0%
AGATAAAGATGATGCCATTG+AGG - chr1_4:3818252-3818271 Msa0144360:five_prime_UTR 35.0%
TTATCTGTCAGATGTTAGCA+AGG - chr1_4:3818362-3818381 Msa0144360:five_prime_UTR 35.0%
AAAGCGGTTCAGCAATATAA+AGG - chr1_4:3818504-3818523 Msa0144360:five_prime_UTR 35.0%
AAGCGGTTCAGCAATATAAA+GGG - chr1_4:3818505-3818524 Msa0144360:five_prime_UTR 35.0%
TTTACCTTCCAGAAATTAGC+TGG + chr1_4:3818552-3818571 None:intergenic 35.0%
!! CTGAGTGATTGTGACTTGTT+TGG + chr1_4:3812673-3812692 None:intergenic 40.0%
!!! AAGCGCTTTGTGTTTTGAAG+AGG + chr1_4:3812751-3812770 None:intergenic 40.0%
!! CATGAATTTGTTGCACGGTT+CGG - chr1_4:3813136-3813155 Msa0144360:CDS 40.0%
CAGTGAAAGTGGAGCTTAAT+CGG - chr1_4:3813162-3813181 Msa0144360:CDS 40.0%
!! AAGCTGAGATTAAAGCGTTG+AGG - chr1_4:3813327-3813346 Msa0144360:CDS 40.0%
GAGAGAAAAAGCTGTTGAAG+AGG - chr1_4:3813364-3813383 Msa0144360:CDS 40.0%
! TTACATGTGAGTGTCGTGTA+TGG + chr1_4:3813484-3813503 None:intergenic 40.0%
ACGACACTCACATGTAAACA+CGG - chr1_4:3813487-3813506 Msa0144360:intron 40.0%
! CTTGGTTGACTTAGTTCAAC+TGG - chr1_4:3813720-3813739 Msa0144360:intron 40.0%
! TGGCAATGCTGAGATTTGTT+AGG - chr1_4:3813740-3813759 Msa0144360:intron 40.0%
AAAACTCACACACACACAAG+GGG + chr1_4:3813807-3813826 None:intergenic 40.0%
!! TGTGTGTGTGAGTTTTTAGG+TGG - chr1_4:3813811-3813830 Msa0144360:CDS 40.0%
TCCTGGTGGGATCATATTAT+TGG - chr1_4:3813938-3813957 Msa0144360:intron 40.0%
ACCAATAATATGATCCCACC+AGG + chr1_4:3813942-3813961 None:intergenic 40.0%
GTGGGATCATATTATTGGTG+TGG - chr1_4:3813943-3813962 Msa0144360:intron 40.0%
GAAGTTGCAGCTGAAAAATG+GGG - chr1_4:3813984-3814003 Msa0144360:intron 40.0%
!!! GTTTGTTTTAAGTGAGGGAG+GGG - chr1_4:3814023-3814042 Msa0144360:CDS 40.0%
TGTAAACCAAGGGAGGATAA+AGG + chr1_4:3814716-3814735 None:intergenic 40.0%
TTATCCTCCCTTGGTTTACA+TGG - chr1_4:3814716-3814735 Msa0144360:CDS 40.0%
TGCAATGCCATGTAAACCAA+GGG + chr1_4:3814726-3814745 None:intergenic 40.0%
ATGCAATGCCATGTAAACCA+AGG + chr1_4:3814727-3814746 None:intergenic 40.0%
ACTACTAGCGTAAGAACAGA+AGG - chr1_4:3814965-3814984 Msa0144360:intron 40.0%
! TGTGTCATTGCCTCTTAGAT+AGG + chr1_4:3815087-3815106 None:intergenic 40.0%
TGCACGGAGAAGGAAAAAAA+TGG - chr1_4:3815140-3815159 Msa0144360:intron 40.0%
AAAGTTAGGACATGGAGATG+AGG - chr1_4:3815163-3815182 Msa0144360:intron 40.0%
GAAGAGCTAGCAAGAGATTA+AGG - chr1_4:3815503-3815522 Msa0144360:intron 40.0%
GTATTGGGTCTTACTTGGTT+TGG - chr1_4:3815621-3815640 Msa0144360:intron 40.0%
TTACGCATGATAGAGGCAAA+AGG + chr1_4:3816220-3816239 None:intergenic 40.0%
! AAGAGCTGTCAAAGGTTGAT+GGG - chr1_4:3816355-3816374 Msa0144360:intron 40.0%
TAGGGCTCAAAGCAATACTT+TGG + chr1_4:3816412-3816431 None:intergenic 40.0%
TAGTGCAGCTTCTTTGGATT+TGG + chr1_4:3816840-3816859 None:intergenic 40.0%
TTCAAGTAGTGCAGCTTCTT+TGG + chr1_4:3816846-3816865 None:intergenic 40.0%
AAAGACTGTTCAGTTTGCCT+TGG - chr1_4:3816871-3816890 Msa0144360:intron 40.0%
GAAACAGATTGAGATTTGCC+AGG - chr1_4:3816943-3816962 Msa0144360:intron 40.0%
GGACAGAATGCATAGACAAA+AGG - chr1_4:3817085-3817104 Msa0144360:intron 40.0%
CAGAATGCATAGACAAAAGG+TGG - chr1_4:3817088-3817107 Msa0144360:intron 40.0%
CTGTTGTGGTTGCAAATGAA+TGG - chr1_4:3817376-3817395 Msa0144360:intron 40.0%
AAGTCATGCCTGTCAAACAA+TGG - chr1_4:3817415-3817434 Msa0144360:intron 40.0%
TCTTCAAGCCATTGTTTGAC+AGG + chr1_4:3817426-3817445 None:intergenic 40.0%
AGTTTGAGGGGAAATTCTAG+CGG - chr1_4:3817776-3817795 Msa0144360:intron 40.0%
! GAGGGAAGAAGTATGAACAA+TGG - chr1_4:3817818-3817837 Msa0144360:intron 40.0%
TATCAACTCCACCTAGTGAT+TGG + chr1_4:3817856-3817875 None:intergenic 40.0%
CTTAGGCAAGAATCCATTAG+AGG + chr1_4:3817894-3817913 None:intergenic 40.0%
!!! AATCTTTTGATGGTGGCTCA+AGG - chr1_4:3817987-3818006 Msa0144360:intron 40.0%
! AAAGAAGTAAAACGGTGCTG+AGG - chr1_4:3818017-3818036 Msa0144360:intron 40.0%
! AAGAAGTAAAACGGTGCTGA+GGG - chr1_4:3818018-3818037 Msa0144360:intron 40.0%
! CTTTGGTTTCTTCGAGAGAT+TGG + chr1_4:3818069-3818088 None:intergenic 40.0%
ATACTATCCTCTGTATCTGC+CGG + chr1_4:3818151-3818170 None:intergenic 40.0%
ATATGACCTCTTGCAGAAAG+AGG - chr1_4:3818183-3818202 Msa0144360:CDS 40.0%
TTGAGGCAAAGAAGATGAGA+AGG - chr1_4:3818416-3818435 Msa0144360:five_prime_UTR 40.0%
TGAGGCAAAGAAGATGAGAA+GGG - chr1_4:3818417-3818436 Msa0144360:five_prime_UTR 40.0%
TACAAGAGAACAGAGCAAAG+CGG - chr1_4:3818488-3818507 Msa0144360:five_prime_UTR 40.0%
! AGAACCAGCTAATTTCTGGA+AGG - chr1_4:3818545-3818564 Msa0144360:five_prime_UTR 40.0%
AGAATTTGAATGCGCGAGTG+AGG - chr1_4:3812960-3812979 Msa0144360:intron 45.0%
GAATTTGAATGCGCGAGTGA+GGG - chr1_4:3812961-3812980 Msa0144360:intron 45.0%
AGGGTTTCGTTTCAGATCGA+CGG - chr1_4:3812980-3812999 Msa0144360:CDS 45.0%
AACGATCCAGAAAATGGTGC+CGG + chr1_4:3813047-3813066 None:intergenic 45.0%
TTCTGCTAGACAGCAGAGTA+TGG - chr1_4:3813100-3813119 Msa0144360:CDS 45.0%
CGATTAAGCTCCACTTTCAC+TGG + chr1_4:3813164-3813183 None:intergenic 45.0%
!! AAGCGTTGAGGCATTCTGAA+CGG - chr1_4:3813339-3813358 Msa0144360:CDS 45.0%
CCAACACAATACCGACACAT+GGG + chr1_4:3813549-3813568 None:intergenic 45.0%
ACCAACACAATACCGACACA+TGG + chr1_4:3813550-3813569 None:intergenic 45.0%
!! GTGTTGGTGTCAAACACTGT+TGG - chr1_4:3813562-3813581 Msa0144360:intron 45.0%
TGGTTACCCAAGTTCGAACT+GGG - chr1_4:3813777-3813796 Msa0144360:intron 45.0%
!!! CATGTTGGGCTTGTTTTGTG+AGG - chr1_4:3813880-3813899 Msa0144360:CDS 45.0%
AATGCCATGTAAACCAAGGG+AGG + chr1_4:3814723-3814742 None:intergenic 45.0%
ACTAGCGTAAGAACAGAAGG+TGG - chr1_4:3814968-3814987 Msa0144360:intron 45.0%
TGTGCTGCAAGCCTATTATG+GGG + chr1_4:3815011-3815030 None:intergenic 45.0%
CTGTGCTGCAAGCCTATTAT+GGG + chr1_4:3815012-3815031 None:intergenic 45.0%
TAGGACATGGAGATGAGGTT+TGG - chr1_4:3815168-3815187 Msa0144360:intron 45.0%
AGGACATGGAGATGAGGTTT+GGG - chr1_4:3815169-3815188 Msa0144360:intron 45.0%
!! GACTCGTAAAAGCACTAGCA+AGG - chr1_4:3815658-3815677 Msa0144360:intron 45.0%
!! TCGTAAAAGCACTAGCAAGG+AGG - chr1_4:3815661-3815680 Msa0144360:intron 45.0%
!! CGTAAAAGCACTAGCAAGGA+GGG - chr1_4:3815662-3815681 Msa0144360:intron 45.0%
AGCAAGGAGGGTAGATCATA+TGG - chr1_4:3815674-3815693 Msa0144360:intron 45.0%
AAGGAGGGTAGATCATATGG+AGG - chr1_4:3815677-3815696 Msa0144360:intron 45.0%
GAAGAGCTGTCAAAGGTTGA+TGG - chr1_4:3816354-3816373 Msa0144360:intron 45.0%
TTGCAGCAGAAGCTACTCTT+CGG - chr1_4:3816556-3816575 Msa0144360:intron 45.0%
GGAGCAAGAATTGCTTCGAT+CGG + chr1_4:3816618-3816637 None:intergenic 45.0%
CGAAGCAATTCTTGCTCCTT+TGG - chr1_4:3816620-3816639 Msa0144360:intron 45.0%
AGCAATTCTTGCTCCTTTGG+AGG - chr1_4:3816623-3816642 Msa0144360:intron 45.0%
! AGCTTTAGTTCAGCCTCCAA+AGG + chr1_4:3816639-3816658 None:intergenic 45.0%
! AGGCTGAACTAAAGCTTGCT+CGG - chr1_4:3816643-3816662 Msa0144360:intron 45.0%
ACCTGGCGAGAAAGAATTGA+TGG - chr1_4:3816706-3816725 Msa0144360:intron 45.0%
TCCATCAATTCTTTCTCGCC+AGG + chr1_4:3816710-3816729 None:intergenic 45.0%
TGGCGAGAAAGAATTGATGG+AGG - chr1_4:3816709-3816728 Msa0144360:intron 45.0%
GGCGAGAAAGAATTGATGGA+GGG - chr1_4:3816710-3816729 Msa0144360:intron 45.0%
!!! GTTTTGGAGATCATCCACCA+TGG + chr1_4:3816906-3816925 None:intergenic 45.0%
! TTTGCCAGGTATCGCAATCT+TGG - chr1_4:3816957-3816976 Msa0144360:intron 45.0%
AAAAGCTCACCCAAACTGTG+AGG - chr1_4:3817120-3817139 Msa0144360:intron 45.0%
AAAGCTCACCCAAACTGTGA+GGG - chr1_4:3817121-3817140 Msa0144360:intron 45.0%
!! TTCTAGCTCCCTCACAGTTT+GGG + chr1_4:3817132-3817151 None:intergenic 45.0%
!! TGTTTGCTGTTACCTTGGCA+CGG + chr1_4:3817350-3817369 None:intergenic 45.0%
TGCCAAGGTAACAGCAAACA+GGG - chr1_4:3817350-3817369 Msa0144360:intron 45.0%
!! TACCCTGTTTGCTGTTACCT+TGG + chr1_4:3817355-3817374 None:intergenic 45.0%
TGAAGAACGACGATTCTTGC+AGG - chr1_4:3817440-3817459 Msa0144360:intron 45.0%
GTTCATACTTCTTCCCTCTG+CGG + chr1_4:3817816-3817835 None:intergenic 45.0%
! ATAGGGATGACCTGAGTTGA+GGG + chr1_4:3817928-3817947 None:intergenic 45.0%
! AGAAGTAAAACGGTGCTGAG+GGG - chr1_4:3818019-3818038 Msa0144360:intron 45.0%
CGAAGAAACCAAAGAGAGAG+AGG - chr1_4:3818075-3818094 Msa0144360:CDS 45.0%
AGAAACCAAAGAGAGAGAGG+CGG - chr1_4:3818078-3818097 Msa0144360:CDS 45.0%
AGAGAGAGGCGGATGATAAT+TGG - chr1_4:3818089-3818108 Msa0144360:CDS 45.0%
GAGGCGGATGATAATTGGAA+AGG - chr1_4:3818094-3818113 Msa0144360:CDS 45.0%
TAAGCCAAATGACTTCCCAC+CGG - chr1_4:3818129-3818148 Msa0144360:CDS 45.0%
TTCATGACCAGCTTTCCTCA+AGG + chr1_4:3818215-3818234 None:intergenic 45.0%
CTGTCAGATGTTAGCAAGGA+AGG - chr1_4:3818366-3818385 Msa0144360:five_prime_UTR 45.0%
AGATACGTTGACCAAAGCCA+TGG - chr1_4:3818390-3818409 Msa0144360:five_prime_UTR 45.0%
CTTCTTTGCCTCAACTTCCA+TGG + chr1_4:3818410-3818429 None:intergenic 45.0%
GGAAGTAGCTTCCATGGAAA+AGG - chr1_4:3818438-3818457 Msa0144360:five_prime_UTR 45.0%
AGTAGCTTCCATGGAAAAGG+AGG - chr1_4:3818441-3818460 Msa0144360:five_prime_UTR 45.0%
!! GGTTCTGAGCACTGTTTACA+GGG + chr1_4:3818531-3818550 None:intergenic 45.0%
!! TGGTTCTGAGCACTGTTTAC+AGG + chr1_4:3818532-3818551 None:intergenic 45.0%
GCTCAGAACCAGCTAATTTC+TGG - chr1_4:3818541-3818560 Msa0144360:five_prime_UTR 45.0%
!!! TATTATGTTTTTTTTTTTTT+TGG - chr1_4:3813644-3813663 Msa0144360:intron 5.0%
!!! ATTATGTTTTTTTTTTTTTT+GGG - chr1_4:3813645-3813664 Msa0144360:intron 5.0%
!! AAAATATTAAAAGAAAATAA+GGG + chr1_4:3814561-3814580 None:intergenic 5.0%
!! TAAAATATTAAAAGAAAATA+AGG + chr1_4:3814562-3814581 None:intergenic 5.0%
!! TTTATATCAAAAAATAAATA+AGG + chr1_4:3817499-3817518 None:intergenic 5.0%
!!! TTTTTTATTTTTATTTTTTC+AGG - chr1_4:3817718-3817737 Msa0144360:intron 5.0%
ACGGCGATGGAGGAGATTTA+CGG - chr1_4:3812999-3813018 Msa0144360:CDS 50.0%
ATGGAGGAGATTTACGGCGA+CGG - chr1_4:3813005-3813024 Msa0144360:CDS 50.0%
AGAACTTCGTCGAGAAGACG+CGG - chr1_4:3813077-3813096 Msa0144360:CDS 50.0%
CGGCTTGAGAATGAAGTTCG+AGG - chr1_4:3813182-3813201 Msa0144360:CDS 50.0%
! CCCATGTGTCGGTATTGTGT+TGG - chr1_4:3813546-3813565 Msa0144360:intron 50.0%
GTGGTTACCCAAGTTCGAAC+TGG - chr1_4:3813776-3813795 Msa0144360:intron 50.0%
GGAGATCCCAGTTCGAACTT+GGG + chr1_4:3813786-3813805 None:intergenic 50.0%
AGCGTAAGAACAGAAGGTGG+TGG - chr1_4:3814971-3814990 Msa0144360:intron 50.0%
CCTGTGCTGCAAGCCTATTA+TGG + chr1_4:3815013-3815032 None:intergenic 50.0%
CCATAATAGGCTTGCAGCAC+AGG - chr1_4:3815010-3815029 Msa0144360:intron 50.0%
AGTCTTAGAGTGCACGGAGA+AGG - chr1_4:3815130-3815149 Msa0144360:intron 50.0%
!! CTTGGTTTGGGCATGTGTAG+TGG - chr1_4:3815634-3815653 Msa0144360:intron 50.0%
GCTGTCTGAAGAGCTGTCAA+AGG - chr1_4:3816347-3816366 Msa0144360:intron 50.0%
AGCAGAAGCTACTCTTCGGA+GGG - chr1_4:3816560-3816579 Msa0144360:intron 50.0%
CATCATCCTTCTGAGCAGCA+TGG + chr1_4:3816587-3816606 None:intergenic 50.0%
GCAAGAATTGCTTCGATCGG+AGG + chr1_4:3816615-3816634 None:intergenic 50.0%
! ACTAAAGCTTGCTCGGCAAG+AGG - chr1_4:3816650-3816669 Msa0144360:intron 50.0%
ATTGATGGAGGGACCGAATC+TGG - chr1_4:3816721-3816740 Msa0144360:intron 50.0%
TGTTCAGTTTGCCTTGGCCA+AGG - chr1_4:3816877-3816896 Msa0144360:intron 50.0%
TTGGAGATCATCCACCATGG+AGG + chr1_4:3816903-3816922 None:intergenic 50.0%
TCGTCCAAGATTGCGATACC+TGG + chr1_4:3816964-3816983 None:intergenic 50.0%
GCATAGACAAAAGGTGGCAG+AGG - chr1_4:3817094-3817113 Msa0144360:intron 50.0%
!! CTTCTAGCTCCCTCACAGTT+TGG + chr1_4:3817133-3817152 None:intergenic 50.0%
CTAGAAGAGTCAGTCCTTGC+AGG - chr1_4:3817146-3817165 Msa0144360:intron 50.0%
GTGCCAAGGTAACAGCAAAC+AGG - chr1_4:3817349-3817368 Msa0144360:intron 50.0%
AGCAAACAGGGTAGCTGTTG+TGG - chr1_4:3817362-3817381 Msa0144360:intron 50.0%
TCAATTGCGGCTCAAAGTGC+TGG - chr1_4:3817748-3817767 Msa0144360:intron 50.0%
!! AAGTGCTGGAGGAGAGTTTG+AGG - chr1_4:3817762-3817781 Msa0144360:intron 50.0%
! AGTGCTGGAGGAGAGTTTGA+GGG - chr1_4:3817763-3817782 Msa0144360:intron 50.0%
TCTTCTCGTCGCCAATCACT+AGG - chr1_4:3817842-3817861 Msa0144360:intron 50.0%
TGAGGGGATGGTGTTCTCTT+AGG + chr1_4:3817911-3817930 None:intergenic 50.0%
! TAGGGATGACCTGAGTTGAG+GGG + chr1_4:3817927-3817946 None:intergenic 50.0%
GATAGGGATGACCTGAGTTG+AGG + chr1_4:3817929-3817948 None:intergenic 50.0%
ATCATCCGCCTCTCTCTCTT+TGG + chr1_4:3818086-3818105 None:intergenic 50.0%
TATCCTCTGTATCTGCCGGT+GGG + chr1_4:3818147-3818166 None:intergenic 50.0%
CAACGACCTCTTTCTGCAAG+AGG + chr1_4:3818192-3818211 None:intergenic 50.0%
AGAAAGAGGTCGTTGCCTTG+AGG - chr1_4:3818197-3818216 Msa0144360:CDS 50.0%
GACCAAAGCCATGGAAGTTG+AGG - chr1_4:3818399-3818418 Msa0144360:five_prime_UTR 50.0%
TGCCTCAACTTCCATGGCTT+TGG + chr1_4:3818404-3818423 None:intergenic 50.0%
GAGAAGGGAAGTAGCTTCCA+TGG - chr1_4:3818432-3818451 Msa0144360:five_prime_UTR 50.0%
! AGCAGCTACCTCCTTTTCCA+TGG + chr1_4:3818452-3818471 None:intergenic 50.0%
TCGTTTCAGATCGACGGCGA+TGG - chr1_4:3812986-3813005 Msa0144360:CDS 55.0%
TTTCAGATCGACGGCGATGG+AGG - chr1_4:3812989-3813008 Msa0144360:CDS 55.0%
! CGGTTCGGATCCAGTGAAAG+TGG - chr1_4:3813151-3813170 Msa0144360:CDS 55.0%
GGGAGATCCCAGTTCGAACT+TGG + chr1_4:3813787-3813806 None:intergenic 55.0%
CAGCAGAAGCTACTCTTCGG+AGG - chr1_4:3816559-3816578 Msa0144360:intron 55.0%
ATCATCCACCATGGAGGCCT+TGG + chr1_4:3816897-3816916 None:intergenic 55.0%
GAAGAGTCAGTCCTTGCAGG+TGG - chr1_4:3817149-3817168 Msa0144360:intron 55.0%
!! ATTGCGGCTCAAAGTGCTGG+AGG - chr1_4:3817751-3817770 Msa0144360:intron 55.0%
GTGCTGGAGGAGAGTTTGAG+GGG - chr1_4:3817764-3817783 Msa0144360:intron 55.0%
TCTCGTCGCCAATCACTAGG+TGG - chr1_4:3817845-3817864 Msa0144360:intron 55.0%
GAACACCATCCCCTCAACTC+AGG - chr1_4:3817915-3817934 Msa0144360:CDS 55.0%
! GATGACCTGAGTTGAGGGGA+TGG + chr1_4:3817923-3817942 None:intergenic 55.0%
!! TGATGGTGGCTCAAGGACAC+TGG - chr1_4:3817994-3818013 Msa0144360:intron 55.0%
TCTGCCGGTGGGAAGTCATT+TGG + chr1_4:3818136-3818155 None:intergenic 55.0%
CTATCCTCTGTATCTGCCGG+TGG + chr1_4:3818148-3818167 None:intergenic 55.0%
GTCGTTGCCTTGAGGAAAGC+TGG - chr1_4:3818205-3818224 Msa0144360:CDS 55.0%
GAGGAGATTTACGGCGACGG+AGG - chr1_4:3813008-3813027 Msa0144360:CDS 60.0%
GATTTACGGCGACGGAGGAG+CGG - chr1_4:3813013-3813032 Msa0144360:CDS 60.0%
! GCGACTCCGGCACCATTTTC+TGG - chr1_4:3813038-3813057 Msa0144360:CDS 60.0%
GTGAGGGAGGGGTGATGCAT+AGG - chr1_4:3814034-3814053 Msa0144360:CDS 60.0%
GAGGGTCCATGCTGCTCAGA+AGG - chr1_4:3816578-3816597 Msa0144360:intron 60.0%
TTGCTGCTGCACCACCTGCA+AGG + chr1_4:3817163-3817182 None:intergenic 60.0%
TAGAGAGTTGGGCCGTGCCA+AGG - chr1_4:3817335-3817354 Msa0144360:intron 60.0%
AGTAGTCGCAGCACCGCAGA+GGG - chr1_4:3817800-3817819 Msa0144360:intron 60.0%
CTTCCCACCGGCAGATACAG+AGG - chr1_4:3818141-3818160 Msa0144360:CDS 60.0%
TGCCTTGGCCAAGGCCTCCA+TGG - chr1_4:3816886-3816905 Msa0144360:intron 65.0%
CACCATGGAGGCCTTGGCCA+AGG + chr1_4:3816891-3816910 None:intergenic 65.0%
CTTGGCCAAGGCCTCCATGG+TGG - chr1_4:3816889-3816908 Msa0144360:intron 65.0%
CAGTAGTCGCAGCACCGCAG+AGG - chr1_4:3817799-3817818 Msa0144360:intron 65.0%
TTACGGCGACGGAGGAGCGG+TGG - chr1_4:3813016-3813035 Msa0144360:CDS 70.0%
CGGAGGAGCGGTGGCGACTC+CGG - chr1_4:3813025-3813044 Msa0144360:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 3812667 3818576 3812667 ID=Msa0144360;Name=Msa0144360
chr1_4 mRNA 3812667 3818576 3812667 ID=Msa0144360-mRNA-1;Parent=Msa0144360;Name=Msa0144360-mRNA-1;_AED=0.15;_eAED=0.15;_QI=338|1|1|1|1|1|10|6|599
chr1_4 exon 3812667 3812870 3812667 ID=Msa0144360-mRNA-1:exon:1608;Parent=Msa0144360-mRNA-1
chr1_4 exon 3812970 3813503 3812970 ID=Msa0144360-mRNA-1:exon:1607;Parent=Msa0144360-mRNA-1
chr1_4 exon 3813589 3813660 3813589 ID=Msa0144360-mRNA-1:exon:1606;Parent=Msa0144360-mRNA-1
chr1_4 exon 3813782 3813928 3813782 ID=Msa0144360-mRNA-1:exon:1605;Parent=Msa0144360-mRNA-1
chr1_4 exon 3814020 3814175 3814020 ID=Msa0144360-mRNA-1:exon:1604;Parent=Msa0144360-mRNA-1
chr1_4 exon 3814279 3814449 3814279 ID=Msa0144360-mRNA-1:exon:1603;Parent=Msa0144360-mRNA-1
chr1_4 exon 3814572 3814742 3814572 ID=Msa0144360-mRNA-1:exon:1602;Parent=Msa0144360-mRNA-1
chr1_4 exon 3814830 3814895 3814830 ID=Msa0144360-mRNA-1:exon:1601;Parent=Msa0144360-mRNA-1
chr1_4 exon 3817858 3817943 3817858 ID=Msa0144360-mRNA-1:exon:1600;Parent=Msa0144360-mRNA-1
chr1_4 exon 3818040 3818576 3818040 ID=Msa0144360-mRNA-1:exon:1599;Parent=Msa0144360-mRNA-1
chr1_4 five_prime_UTR 3818239 3818576 3818239 ID=Msa0144360-mRNA-1:five_prime_utr;Parent=Msa0144360-mRNA-1
chr1_4 CDS 3818040 3818238 3818040 ID=Msa0144360-mRNA-1:cds;Parent=Msa0144360-mRNA-1
chr1_4 CDS 3817858 3817943 3817858 ID=Msa0144360-mRNA-1:cds;Parent=Msa0144360-mRNA-1
chr1_4 CDS 3814830 3814895 3814830 ID=Msa0144360-mRNA-1:cds;Parent=Msa0144360-mRNA-1
chr1_4 CDS 3814572 3814742 3814572 ID=Msa0144360-mRNA-1:cds;Parent=Msa0144360-mRNA-1
chr1_4 CDS 3814279 3814449 3814279 ID=Msa0144360-mRNA-1:cds;Parent=Msa0144360-mRNA-1
chr1_4 CDS 3814020 3814175 3814020 ID=Msa0144360-mRNA-1:cds;Parent=Msa0144360-mRNA-1
chr1_4 CDS 3813782 3813928 3813782 ID=Msa0144360-mRNA-1:cds;Parent=Msa0144360-mRNA-1
chr1_4 CDS 3813589 3813660 3813589 ID=Msa0144360-mRNA-1:cds;Parent=Msa0144360-mRNA-1
chr1_4 CDS 3812970 3813503 3812970 ID=Msa0144360-mRNA-1:cds;Parent=Msa0144360-mRNA-1
chr1_4 CDS 3812673 3812870 3812673 ID=Msa0144360-mRNA-1:cds;Parent=Msa0144360-mRNA-1
chr1_4 three_prime_UTR 3812667 3812672 3812667 ID=Msa0144360-mRNA-1:three_prime_utr;Parent=Msa0144360-mRNA-1
Gene Sequence

>Msa0144360

ATGGAGGAGATTTACGGCGACGGAGGAGCGGTGGCGACTCCGGCACCATTTTCTGGATCGTTTAGAGAAGGTAGAACTTCGTCGAGAAGACGCGGTTCTGCTAGACAGCAGAGTATGGATGCTGATGAGTTCATGAATTTGTTGCACGGTTCGGATCCAGTGAAAGTGGAGCTTAATCGGCTTGAGAATGAAGTTCGAGATAAGGATAGAGAATTATCGGAAGCACAAGCTGAGATTAAAGCGTTGAGGCATTCTGAACGGTTGAGAGAAAAAGCTGTTGAAGAGCTGTCTGAAGAGCTGTCAAAGGTTGATGGGAAGCTAAAATTAACGGAATCTCTATTAGAAACCAAAAATCTTGAAATAAAAAAAATCAATGATGAAAAGAAAGCATCAATGGCAGCTCAGTTTGCAGCAGAAGCTACTCTTCGGAGGGTCCATGCTGCTCAGAAGGATGATGACATGCCTCCGATCGAAGCAATTCTTGCTCCTTTGGAGGCTGAACTAAAGCTTGCTCGGCAAGAGATTGCTAAACTACAAGATGACAACAGAGCTTTAGATCGTCTTACCAAATCCAAAGAAGCTGCACTACTTGAAGCTGAAAAGACTGTTCAGTTTGCCTTGGCCAAGGCCTCCATGGTGGATGATCTCCAAAACAAAAATCAAGAGCTGATGAAACAGATTGAGATTTGCCAGGAAGAAAACAAAATCTTGGACAGAATGCATAGACAAAAGGTGGCAGAGGTTGAAAAGCTCACCCAAACTGTGAGGGAGCTAGAAGAGTCAGTCCTTGCAGGTGGTGCAGCAGCAAATGCAGTTAGAGATTATCAACGGAAAGTTCAAGAAATGAATGAAGAACGAAAAACACTTAATAGAGAGTTGGGCCGTGCCAAGGTAACAGCAAACAGGGTAGCTGTTGTGGTTGCAAATGAATGGAAAGATTCTAATGATAAAGTCATGCCTGTCAAACAATGGCTTGAAGAACGACGATTCTTGCAGGGGGAAATGCAGCAACTTCGTGATAAGCTTGCTATAGTTGAGCGCACTGCAAAGTCTGAAGCACAATTGAAAGAAAAATATCAATTGCGGCTCAAAGTGCTGGAGGAGAGTTTGAGGGGAAATTCTAGCGGCAGTAGTCGCAGCACCGCAGAGGGAAGAAGTATGAACAATGGTTCTTCTCGTCGCCAATCACTAGGTGGAGTTGATAATATCTCAAAATTAACCTCTAATGGATTCTTGCCTAAGAGAACACCATCCCCTCAACTCAGGTCATCCCTATCATCTAGCTCAATATTGAGGAGTGCTAAAGGAACATCTAAATCTTTTGATGGTGGCTCAAGGACACTGGAAAGAAGTAAAACGGTGCTGAGGGGAGCACCTCAAAGTTACTCATTCAACCAATCTCTCGAAGAAACCAAAGAGAGAGAGGCGGATGATAATTGGAAAGGAAATTCAGGTGATAAGCCAAATGACTTCCCACCGGCAGATACAGAGGATAGTATTCCAAGTGTTTTATATGACCTCTTGCAGAAAGAGGTCGTTGCCTTGAGGAAAGCTGGTCATGAAAAAGATCAAAGCCTAAAAGATAAAGATGATGCCATTGAGATGTTAGCAAGGAAGGTAGATACGTTGACCAAAGCCATGGAAGTTGAGGCAAAGAAGATGAGAAGGGAAGTAGCTTCCATGGAAAAGGAGGTAGCTGCTATGCGTGTCGACAAAGTACAAGAGAACAGAGCAAAGCGGTTCAGCAATATAAAGGGCCCTGTAAACAGTGCTCAGAACCAGCTAATTTCTGGAAGGTAA

Protein sequence

>Msa0144360

MEEIYGDGGAVATPAPFSGSFREGRTSSRRRGSARQQSMDADEFMNLLHGSDPVKVELNRLENEVRDKDRELSEAQAEIKALRHSERLREKAVEELSEELSKVDGKLKLTESLLETKNLEIKKINDEKKASMAAQFAAEATLRRVHAAQKDDDMPPIEAILAPLEAELKLARQEIAKLQDDNRALDRLTKSKEAALLEAEKTVQFALAKASMVDDLQNKNQELMKQIEICQEENKILDRMHRQKVAEVEKLTQTVRELEESVLAGGAAANAVRDYQRKVQEMNEERKTLNRELGRAKVTANRVAVVVANEWKDSNDKVMPVKQWLEERRFLQGEMQQLRDKLAIVERTAKSEAQLKEKYQLRLKVLEESLRGNSSGSSRSTAEGRSMNNGSSRRQSLGGVDNISKLTSNGFLPKRTPSPQLRSSLSSSSILRSAKGTSKSFDGGSRTLERSKTVLRGAPQSYSFNQSLEETKEREADDNWKGNSGDKPNDFPPADTEDSIPSVLYDLLQKEVVALRKAGHEKDQSLKDKDDAIEMLARKVDTLTKAMEVEAKKMRREVASMEKEVAAMRVDKVQENRAKRFSNIKGPVNSAQNQLISGR*