AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0104550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104550 MtrunA17_Chr1g0158791 98.383 371 6 0 1 371 2 372 0.0 761
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0104550 AT3G20740.1 71.507 365 104 0 1 365 1 365 0.0 583

Find 181 sgRNAs with CRISPR-Local

Find 386 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACATGAGCTTTCTGGTTTA+TGG 0.075717 1_3:+12504228 Msa0104550:three_prime_UTR
TGCTGCTTCAAAACTGTTTA+AGG 0.136078 1_3:-12504838 Msa0104560:CDS
TTGAGTCCTGATTTCATTTA+TGG 0.161211 1_3:-12501734 None:intergenic
GTAATCCAACATGAGCTTTC+TGG 0.165686 1_3:+12504221 Msa0104550:three_prime_UTR
AGAAATGAAGTTGTTTAGTT+TGG 0.226754 1_3:+12500900 Msa0104550:exon
TAATTGCACTGCTTGTTAAC+AGG 0.274896 1_3:+12500788 None:intergenic
ATTCTCTCTGATGGTGGTTT+TGG 0.280005 1_3:+12505035 Msa0104550:three_prime_UTR
TTACTTTCTAAGTTATCTTT+TGG 0.280021 1_3:+12505706 Msa0104550:three_prime_UTR
AACACTTTATTATGCCTTAG+AGG 0.288583 1_3:+12506231 Msa0104550:three_prime_UTR
AAACCATAGATTGGTCAAAA+TGG 0.294312 1_3:-12505759 Msa0104560:CDS
GGAGATTGTTCCTTCACTTT+TGG 0.304329 1_3:-12503398 None:intergenic
GGGGCTCCGCTTGCTGTGGC+TGG 0.309712 1_3:+12501478 Msa0104550:CDS
AGGAGCATGAGATCAAATTT+TGG 0.311450 1_3:+12505152 Msa0104550:three_prime_UTR
ATTGATTTCTTTAGTAATAG+TGG 0.312473 1_3:+12506291 Msa0104550:three_prime_UTR
TATTTCACTGTTGCTTTGTC+TGG 0.315803 1_3:-12506057 Msa0104560:CDS
GGTATAATTCGAGTCATTAA+TGG 0.331826 1_3:+12501511 Msa0104550:CDS
CATTTCAAGGCATGTGCAAT+AGG 0.337992 1_3:+12503590 Msa0104550:CDS
TCGCCACAGTTGGTGGCAAT+CGG 0.340184 1_3:+12501058 Msa0104550:CDS
TGCACTATTATTTCATAAGT+TGG 0.345447 1_3:+12504515 Msa0104550:three_prime_UTR
GAAATGAAGTTGTTTAGTTT+GGG 0.348766 1_3:+12500901 Msa0104550:exon
AAACTGTTTAAGGAGTAAAA+TGG 0.349783 1_3:-12504828 None:intergenic
GACAGAGCAGTTTGCCTGAT+TGG 0.353858 1_3:-12503990 None:intergenic
TTCTTGTGATTTCCATTTCA+AGG 0.357319 1_3:+12503577 Msa0104550:CDS
ATGAACCATATATCACATTC+AGG 0.362984 1_3:-12503548 None:intergenic
CAATCTATGGTTTCAGCATA+TGG 0.367849 1_3:+12505769 Msa0104550:three_prime_UTR
AGGATGAGTCGGTTCGGTTA+TGG 0.369014 1_3:+12501871 Msa0104550:intron
CTGTTCCTGAATGTGATATA+TGG 0.380086 1_3:+12503543 Msa0104550:CDS
ATAGAGGACGCTTGCCCTCT+TGG 0.383210 1_3:-12500990 None:intergenic
GTGAACAAAATAAGCTACTT+TGG 0.384187 1_3:+12506325 Msa0104550:three_prime_UTR
GTTGATTGTACTAGATGGTT+GGG 0.389994 1_3:+12502736 Msa0104550:CDS
ATTACGTTGATTGTACTAGA+TGG 0.390980 1_3:+12502731 Msa0104550:CDS
CTATTGCACATGCCTTGAAA+TGG 0.404472 1_3:-12503589 None:intergenic
TGATCTCATGCTCCTAGGTA+TGG 0.406465 1_3:-12505144 Msa0104560:CDS
CATATATCACATTCAGGAAC+AGG 0.408036 1_3:-12503542 None:intergenic
TGAAACAACCCTAAGACGTT+TGG 0.412525 1_3:-12505213 Msa0104560:CDS
GGAACATCTTGCTGTGTCAT+TGG 0.418210 1_3:-12506127 Msa0104560:CDS
TTCTCCAAGAGGATCAGAAA+TGG 0.419423 1_3:-12505079 Msa0104560:CDS
AACAAATTCATCAAAGAAAG+AGG 0.421608 1_3:-12506081 Msa0104560:CDS
CTCAATCAAAATCTCCAATC+AGG 0.426061 1_3:+12503976 Msa0104550:CDS
AGTATTATCCATGCCACAAC+TGG 0.426956 1_3:-12502117 None:intergenic
CAGCAATAACTCCTCCTTGA+AGG 0.427134 1_3:-12501202 None:intergenic
GTTCCCACAAGACAATTTCA+TGG 0.428181 1_3:-12503376 None:intergenic
TTCACTGTTGCTTTGTCTGG+TGG 0.432382 1_3:-12506054 Msa0104560:CDS
CGCCACAGTTGGTGGCAATC+GGG 0.433391 1_3:+12501059 Msa0104550:CDS
GGCATCACTTAAGTGGGAAA+AGG 0.443000 1_3:-12506178 Msa0104560:CDS
ACTAACTTTGCAATAAGAAT+AGG 0.443448 1_3:-12503873 None:intergenic
CTTGCCCTCTTGGAGGCGAT+TGG 0.444725 1_3:-12500980 None:intergenic
TTAAGATTTGAGTATGCATT+TGG 0.445767 1_3:+12506408 Msa0104550:three_prime_UTR
TAAACGTTGAGAGGAGGAAT+TGG 0.449024 1_3:+12505281 Msa0104550:three_prime_UTR
TGGATAATACTGTTAAGATA+TGG 0.449910 1_3:+12502129 Msa0104550:CDS
GGGACTCCATAAATGAAATC+AGG 0.451609 1_3:+12501728 Msa0104550:CDS
TAACCCATTTCTGATCCTCT+TGG 0.454962 1_3:+12505075 Msa0104550:three_prime_UTR
GAAAAGGTTTCACCTCTTGA+AGG 0.456560 1_3:-12504888 Msa0104560:CDS
CATGTTGCATCTTTATTCCC+AGG 0.457125 1_3:-12505110 Msa0104560:CDS
ACTATTTATCAATGCCTTCA+AGG 0.459450 1_3:+12501188 Msa0104550:CDS
CACAGCAAGCGGAGCCCCAT+TGG 0.459961 1_3:-12501473 None:intergenic
CTCTTGAAGGGGAATTGAAA+TGG 0.460789 1_3:-12504875 Msa0104560:CDS
AAAGATGCAACATGTCCATC+TGG 0.461834 1_3:+12505119 Msa0104550:three_prime_UTR
AAAAGTGAAGGAACAATCTC+CGG 0.462918 1_3:+12503400 Msa0104550:CDS
CATCAAAATAAGTTAAGCTT+CGG 0.467093 1_3:-12504169 None:intergenic
CGTTGATTGTACTAGATGGT+TGG 0.469880 1_3:+12502735 Msa0104550:CDS
AAAGTGAAGGAACAATCTCC+GGG 0.472235 1_3:+12503401 Msa0104550:CDS
TAAACATCAGCTGCTCCATC+AGG 0.473530 1_3:+12505236 Msa0104550:three_prime_UTR
TCGGTAACTTGAATTCTTCA+AGG 0.477006 1_3:+12500938 Msa0104550:CDS
AATTATAAGCTTGCCAGTGA+TGG 0.484242 1_3:-12505685 Msa0104560:CDS
TTTATGGATTTGACTAGTCA+TGG 0.486081 1_3:+12504244 Msa0104550:three_prime_UTR
GCTGGGCATGCAATACCAAT+GGG 0.490406 1_3:+12501458 Msa0104550:CDS
GATCTCATGCTCCTAGGTAT+GGG 0.491824 1_3:-12505143 Msa0104560:CDS
GCTGTGGCTGGAGGAGTCAA+TGG 0.492947 1_3:+12501490 Msa0104550:CDS
TGTCATGTTGCCTGTTGAAA+AGG 0.494449 1_3:-12504904 Msa0104560:CDS
AAATAGAGGCATCACTTAAG+TGG 0.496228 1_3:-12506185 Msa0104560:CDS
TGTTAAGATATGGTCTATGA+AGG 0.499381 1_3:+12502139 Msa0104550:CDS
CGCAGTTTACACTGCACTTG+AGG 0.500062 1_3:-12504940 Msa0104560:CDS
AACAATTCTTCAGTCGGAAG+TGG 0.500859 1_3:+12500826 Msa0104550:five_prime_UTR
ATTGTAACAGTTGTAGTATG+AGG 0.502526 1_3:-12504481 None:intergenic
GCATCACTTAAGTGGGAAAA+GGG 0.504570 1_3:-12506177 Msa0104560:CDS
TCTCCAAGAGGATCAGAAAT+GGG 0.506655 1_3:-12505078 Msa0104560:CDS
CAGCTGCTCCATCAGGTGGT+AGG 0.508616 1_3:+12505243 Msa0104550:three_prime_UTR
AAATTTGATCTCATGCTCCT+AGG 0.509138 1_3:-12505149 Msa0104560:CDS
GAAGAAATCACCTTCCATCA+TGG 0.511747 1_3:-12504013 None:intergenic
GGCGAAAACGTTGAAGTAGC+GGG 0.515363 1_3:-12501040 None:intergenic
AAAAGGTTTCACCTCTTGAA+GGG 0.515655 1_3:-12504887 Msa0104560:CDS
AACAAAATAAGCTACTTTGG+AGG 0.518255 1_3:+12506328 Msa0104550:three_prime_UTR
AGTCACCACCATTGCAACAT+TGG 0.519798 1_3:+12504980 Msa0104550:three_prime_UTR
CATATGCTGAAACCATAGAT+TGG 0.520043 1_3:-12505768 Msa0104560:CDS
CTGCATATTTCAAAACAAGT+TGG 0.522950 1_3:+12500872 Msa0104550:five_prime_UTR
GCTCCGCTTGCTGTGGCTGG+AGG 0.526253 1_3:+12501481 Msa0104550:CDS
GATCATTGATCAAGTACCTA+AGG 0.528998 1_3:-12506032 Msa0104560:intron
AGCTGCTCCATCAGGTGGTA+GGG 0.529718 1_3:+12505244 Msa0104550:three_prime_UTR
TTGATTGTACTAGATGGTTG+GGG 0.530596 1_3:+12502737 Msa0104550:CDS
GCAATCTTAAATATATCTGA+TGG 0.530601 1_3:-12502095 None:intergenic
GCTGCGACGATGGAACAATA+TGG 0.532008 1_3:+12504127 Msa0104550:CDS
AATTGCACTGCTTGTTAACA+GGG 0.532045 1_3:+12500789 Msa0104550:five_prime_UTR
CAAACTGCTCTGTCCCATGA+TGG 0.534574 1_3:+12503999 Msa0104550:CDS
ACGATGGAACAATATGGCGC+TGG 0.535341 1_3:+12504133 Msa0104550:CDS
TGACCATGAAATTGTCTTGT+GGG 0.535677 1_3:+12503373 Msa0104550:CDS
AGATACCACGATACCACAAA+TGG 0.537329 1_3:-12506382 None:intergenic
CAATACTTAAGACTTCATTA+CGG 0.539217 1_3:-12501944 None:intergenic
GTGAAAGTAATTCTCTCTGA+TGG 0.540458 1_3:+12505026 Msa0104550:three_prime_UTR
GAATTCAAGTTACCGACCAC+TGG 0.540698 1_3:-12500931 None:intergenic
TTGGAAGAAGCATTGATCAC+TGG 0.541052 1_3:+12504999 Msa0104550:three_prime_UTR
AGCTGGGCATGCAATACCAA+TGG 0.542122 1_3:+12501457 Msa0104550:CDS
ATCTGCCAGGCAACAGGGAA+GGG 0.543112 1_3:+12503817 Msa0104550:intron
TTGAAAACAACAGCATATAG+AGG 0.543815 1_3:-12501006 None:intergenic
ATTAGTCAAAGTTGTTGAGA+AGG 0.549232 1_3:+12506359 Msa0104550:three_prime_UTR
AAGAAATCACCTTCCATCAT+GGG 0.549353 1_3:-12504012 None:intergenic
TTGTAACAGTTGTAGTATGA+GGG 0.549703 1_3:-12504480 None:intergenic
GCAATGGTGGTGACTGGCGC+GGG 0.551673 1_3:-12504972 Msa0104560:CDS
CTAGCAGATATCACAAGTGC+TGG 0.552395 1_3:-12501766 None:intergenic
GAGGACGCTTGCCCTCTTGG+AGG 0.553105 1_3:-12500987 None:intergenic
CTCCTAGGTATGGGTCCAGA+TGG 0.553952 1_3:-12505134 Msa0104560:CDS
AATAGAGGCATCACTTAAGT+GGG 0.554935 1_3:-12506184 Msa0104560:CDS
ACTCCTCCAGCCACAGCAAG+CGG 0.555533 1_3:-12501484 None:intergenic
TTGAAATGGTACTTAGACAA+AGG 0.555841 1_3:-12504861 Msa0104560:CDS
TTGACCAGGATGAGTCGGTT+CGG 0.559065 1_3:+12501865 Msa0104550:intron
TAAGATTGCCAGTTGTGGCA+TGG 0.560210 1_3:+12502109 Msa0104550:CDS
TAGTCATGGACACGAGAACC+TGG 0.561216 1_3:+12504258 Msa0104550:three_prime_UTR
GTTGTTGAGAAGGCCATTTG+TGG 0.564167 1_3:+12506369 Msa0104550:three_prime_UTR
TGCTTCTTCCAATGTTGCAA+TGG 0.565044 1_3:-12504988 Msa0104560:CDS
CATTTCAATTCCCCTTCAAG+AGG 0.566687 1_3:+12504876 Msa0104550:three_prime_UTR
GATGATTCCCTACCACCTGA+TGG 0.566852 1_3:-12505251 Msa0104560:CDS
AACTTTGCAATAAGAATAGG+AGG 0.567634 1_3:-12503870 None:intergenic
ATATTTAAGATTGCCAGTTG+TGG 0.568569 1_3:+12502104 Msa0104550:CDS
CAATGGGGCTCCGCTTGCTG+TGG 0.568999 1_3:+12501474 Msa0104550:CDS
AATGTTGCAATGGTGGTGAC+TGG 0.569664 1_3:-12504978 Msa0104560:CDS
AGGTGGTAGGGAATCATCAA+TGG 0.569674 1_3:+12505256 Msa0104550:three_prime_UTR
TTCTTCCAATGTTGCAATGG+TGG 0.573190 1_3:-12504985 Msa0104560:CDS
CGATGGAACAATATGGCGCT+GGG 0.574058 1_3:+12504134 Msa0104550:CDS
TAGAAGTAAAGCAAATAGTA+CGG 0.575953 1_3:+12506480 Msa0104550:three_prime_UTR
TTGATATTTGCTGGAGCTGG+AGG 0.577096 1_3:+12501918 Msa0104550:CDS
AAAGGGTTATAAGAATGTTG+AGG 0.580239 1_3:-12506160 Msa0104560:CDS
GATCTGCCAGGCAACAGGGA+AGG 0.581341 1_3:+12503816 Msa0104550:intron
TGCAATGGTGGTGACTGGCG+CGG 0.584998 1_3:-12504973 Msa0104560:CDS
GTTAAGATATGGTCTATGAA+GGG 0.585488 1_3:+12502140 Msa0104550:CDS
TAGTTCTAACTAACCTCCCC+CGG 0.588824 1_3:-12503419 None:intergenic
GACAACAACAATTCTTCAGT+CGG 0.592058 1_3:+12500820 Msa0104550:five_prime_UTR
GATGTAATTTATAACTCAGA+GGG 0.593031 1_3:+12504597 Msa0104550:three_prime_UTR
AACCCGATTGCCACCAACTG+TGG 0.596131 1_3:-12501061 None:intergenic
ACAAAATAAGCTACTTTGGA+GGG 0.598728 1_3:+12506329 Msa0104550:three_prime_UTR
AAAGGTTTCACCTCTTGAAG+GGG 0.598919 1_3:-12504886 Msa0104560:CDS
CTTGGAGAGAAATCCATCAC+TGG 0.601315 1_3:+12505672 Msa0104550:three_prime_UTR
GTCACCAATCGCCTCCAAGA+GGG 0.603232 1_3:+12500976 Msa0104550:CDS
TTTCATTTATGGAGTCCCCA+TGG 0.605251 1_3:-12501723 None:intergenic
TTGCACTGCTTGTTAACAGG+GGG 0.607200 1_3:+12500791 Msa0104550:five_prime_UTR
CTGCTCTGTCCCATGATGGA+AGG 0.609716 1_3:+12504003 Msa0104550:CDS
TGGCGAAAACGTTGAAGTAG+CGG 0.611387 1_3:-12501041 None:intergenic
CTTGGAGAAGAGCATGACCT+GGG 0.611662 1_3:+12505093 Msa0104550:three_prime_UTR
AGTTTAGTCGATCTATTGTG+TGG 0.611877 1_3:+12504288 Msa0104550:three_prime_UTR
TAAGGTTGACCAGGATGAGT+CGG 0.612307 1_3:+12501860 Msa0104550:intron
AAAGTAATTCTCTCTGATGG+TGG 0.620404 1_3:+12505029 Msa0104550:three_prime_UTR
CAGTGATGGATTTCTCTCCA+AGG 0.622114 1_3:-12505671 Msa0104560:intron
TCTTGGAGAAGAGCATGACC+TGG 0.622800 1_3:+12505092 Msa0104550:three_prime_UTR
TTGACCATGAAATTGTCTTG+TGG 0.623303 1_3:+12503372 Msa0104550:CDS
ATTAGTCAAGAAATAAACAA+AGG 0.623757 1_3:-12504627 None:intergenic
TCAATGGCATAAACGTTGAG+AGG 0.637656 1_3:+12505272 Msa0104550:three_prime_UTR
TTTGGATCTGCCAGGCAACA+GGG 0.637676 1_3:+12503812 Msa0104550:intron
ATGGCATAAACGTTGAGAGG+AGG 0.640971 1_3:+12505275 Msa0104550:three_prime_UTR
ACATCAGCTGCTCCATCAGG+TGG 0.642046 1_3:+12505239 Msa0104550:three_prime_UTR
CTTGTGGGAACCAAAAGTGA+AGG 0.642680 1_3:+12503388 Msa0104550:CDS
ATGTAGAACAATCATTCACA+TGG 0.644945 1_3:+12502561 Msa0104550:CDS
TAGTTTGGGAACTGAACCAG+TGG 0.645204 1_3:+12500915 Msa0104550:CDS
AGATGTAATTTATAACTCAG+AGG 0.645516 1_3:+12504596 Msa0104550:three_prime_UTR
ATAAACCAGAAAGCTCATGT+TGG 0.646011 1_3:-12504226 None:intergenic
CGGTTATGGAATGTTCACAC+TGG 0.649169 1_3:+12501885 Msa0104550:CDS
AGCAAACACTCACCTTTGAG+AGG 0.649424 1_3:-12502768 None:intergenic
AGGTCATGCTCTTCTCCAAG+AGG 0.654284 1_3:-12505090 Msa0104560:CDS
GAAGGCCATTTGTGGTATCG+TGG 0.660190 1_3:+12506377 Msa0104550:three_prime_UTR
TCGACTAAACTCGATAAACC+AGG 0.661196 1_3:-12504276 None:intergenic
GTCCATCTGGACCCATACCT+AGG 0.668407 1_3:+12505132 Msa0104550:three_prime_UTR
TTGGGAACTGAACCAGTGGT+CGG 0.669095 1_3:+12500919 Msa0104550:CDS
ATTGCACTGCTTGTTAACAG+GGG 0.676361 1_3:+12500790 Msa0104550:five_prime_UTR
AAATCAGGACTCAAGCGATG+AGG 0.677691 1_3:+12501743 Msa0104550:CDS
ATATATCACATTCAGGAACA+GGG 0.685190 1_3:-12503541 None:intergenic
TGATTGTACTAGATGGTTGG+GGG 0.686806 1_3:+12502738 Msa0104550:CDS
CTCAAGTGCAGTGTAAACTG+CGG 0.695035 1_3:+12504941 Msa0104550:three_prime_UTR
ATTTATCAATGCCTTCAAGG+AGG 0.700895 1_3:+12501191 Msa0104550:CDS
AGTCACCAATCGCCTCCAAG+AGG 0.702657 1_3:+12500975 Msa0104550:CDS
AAGTGAAGGAACAATCTCCG+GGG 0.721249 1_3:+12503402 Msa0104550:CDS
AGTGAAGGAACAATCTCCGG+GGG 0.721831 1_3:+12503403 Msa0104550:CDS
TAGCGATGAGAAGTTACACA+AGG 0.725107 1_3:+12501534 Msa0104550:CDS
CTGGGCATGCAATACCAATG+GGG 0.727775 1_3:+12501459 Msa0104550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTATTATTATTAAAAAAA+AGG + chr1_3:12501368-12501387 Msa0104550:intron 0.0%
!! AATCAAATCAAATTAATTTA+AGG - chr1_3:12501623-12501642 None:intergenic 10.0%
!! TTTGATTCAATAATATTTAA+AGG + chr1_3:12501636-12501655 Msa0104550:intron 10.0%
!!! ATTTTACAAATTTATACTTT+TGG - chr1_3:12502383-12502402 None:intergenic 10.0%
!!! CTTTTAATTATTTTATTGAA+GGG - chr1_3:12503226-12503245 None:intergenic 10.0%
!!! ACTTTTAATTATTTTATTGA+AGG - chr1_3:12503227-12503246 None:intergenic 10.0%
!! ATAGTAACATTTATATTAAA+AGG + chr1_3:12505567-12505586 Msa0104550:intron 10.0%
!!! ATTTTGCATTTTTGTTTATT+TGG + chr1_3:12501285-12501304 Msa0104550:intron 15.0%
!!! TTTTCATACAATAACTTATA+AGG + chr1_3:12501842-12501861 Msa0104550:intron 15.0%
!!! TAAGCAATCATAATATTTTT+GGG - chr1_3:12502332-12502351 None:intergenic 15.0%
!!! ATAAGCAATCATAATATTTT+TGG - chr1_3:12502333-12502352 None:intergenic 15.0%
!!! AAAATTTGTTTTAACTATGA+AGG + chr1_3:12502437-12502456 Msa0104550:intron 15.0%
!!! AAATTTGTTTTAACTATGAA+GGG + chr1_3:12502438-12502457 Msa0104550:intron 15.0%
!!! TATATATTTTCCTTTTCATT+TGG + chr1_3:12503172-12503191 Msa0104550:intron 15.0%
!! TTTCTAAATATTTGTGTTAT+TGG + chr1_3:12503896-12503915 Msa0104550:intron 15.0%
!!! CATTAGTTTTTTTTTTTTCA+AGG + chr1_3:12504673-12504692 Msa0104550:three_prime_UTR 15.0%
!!! CAATTTTATGTTTTTATTTC+AGG - chr1_3:12505810-12505829 Msa0104560:intron 15.0%
!!! ATATGATTTTAATGTTACAT+AGG - chr1_3:12505930-12505949 Msa0104560:intron 15.0%
!! TTTGTTAACCTAATTTAAAT+AGG - chr1_3:12505963-12505982 Msa0104560:intron 15.0%
!! GAATGGAAAAAAATAGAAAA+AGG - chr1_3:12501092-12501111 None:intergenic 20.0%
!! ATTAAAAAAAAGGAACAAAG+TGG + chr1_3:12501378-12501397 Msa0104550:intron 20.0%
!! TTAAAAAAAAGGAACAAAGT+GGG + chr1_3:12501379-12501398 Msa0104550:intron 20.0%
!!! GTAACAATAATTTGTTAGTT+TGG + chr1_3:12501567-12501586 Msa0104550:intron 20.0%
!! CTTTGATTATTACCATAATT+TGG - chr1_3:12502018-12502037 None:intergenic 20.0%
!!! ATAATCAAAGTTTTGACATT+TGG + chr1_3:12502028-12502047 Msa0104550:intron 20.0%
!!! AAGCAATCATAATATTTTTG+GGG - chr1_3:12502331-12502350 None:intergenic 20.0%
!!! TAAAATAAACTGTTACTTAC+AGG - chr1_3:12502629-12502648 None:intergenic 20.0%
!! TAAAAGGAATAATGAAAACA+AGG + chr1_3:12502917-12502936 Msa0104550:intron 20.0%
!! ATAATGAAAACAAGGAATAT+TGG + chr1_3:12502925-12502944 Msa0104550:intron 20.0%
!!! AACAAATTTTGACCATTTTT+TGG + chr1_3:12503061-12503080 Msa0104550:intron 20.0%
!! TCCAAAAGAAAAAGAAAAAA+CGG - chr1_3:12503798-12503817 None:intergenic 20.0%
!!! ATGTTTATTGAGAACTTTTT+CGG + chr1_3:12504347-12504366 Msa0104550:three_prime_UTR 20.0%
!!! TGTCTCTTTTATTTTCAAAA+TGG - chr1_3:12504380-12504399 None:intergenic 20.0%
!!! TTGGTAACATTTTTGAATAT+TGG + chr1_3:12504534-12504553 Msa0104550:three_prime_UTR 20.0%
!! ATTAGTCAAGAAATAAACAA+AGG - chr1_3:12504630-12504649 None:intergenic 20.0%
!!! ATCAAATTTTGGTAATTCAT+TGG + chr1_3:12505163-12505182 Msa0104550:three_prime_UTR 20.0%
!! TTATCTAATTACGATATCAT+AGG - chr1_3:12505431-12505450 Msa0104560:intron 20.0%
!! TATGATATCGTAATTAGATA+AGG + chr1_3:12505430-12505449 Msa0104550:intron 20.0%
!! ATGATATCGTAATTAGATAA+GGG + chr1_3:12505431-12505450 Msa0104550:intron 20.0%
!!! GAAATTAATCATTTTGATGT+TGG - chr1_3:12505594-12505613 Msa0104560:intron 20.0%
!!! TTACTTTCTAAGTTATCTTT+TGG + chr1_3:12505706-12505725 Msa0104550:three_prime_UTR 20.0%
!!! TACTTTCTAAGTTATCTTTT+GGG + chr1_3:12505707-12505726 Msa0104550:three_prime_UTR 20.0%
!!! ATGTTTTTATTTCAGGAAAT+TGG - chr1_3:12505803-12505822 Msa0104560:intron 20.0%
!! AGCCTAGAAATAAATAATTA+AGG + chr1_3:12505851-12505870 Msa0104550:intron 20.0%
!!! CACCTTAATTATTTATTTCT+AGG - chr1_3:12505856-12505875 Msa0104560:intron 20.0%
!! ATTTAAATGGAATTGTGATT+AGG - chr1_3:12505899-12505918 Msa0104560:intron 20.0%
!!! ATAGGTTGGTATAATTTAAA+TGG - chr1_3:12505912-12505931 Msa0104560:intron 20.0%
!!! ATTGATTTCTTTAGTAATAG+TGG + chr1_3:12506291-12506310 Msa0104550:three_prime_UTR 20.0%
! AGAAATGAAGTTGTTTAGTT+TGG + chr1_3:12500900-12500919 Msa0104550:exon 25.0%
!! GAAATGAAGTTGTTTAGTTT+GGG + chr1_3:12500901-12500920 Msa0104550:exon 25.0%
! AAGGTTATGTTAGAATTGAA+TGG - chr1_3:12501109-12501128 None:intergenic 25.0%
!! CTTTTTCTTCTTCGTTTATT+AGG + chr1_3:12501163-12501182 Msa0104550:intron 25.0%
! AAAATGCAAAATGTTAGACA+CGG - chr1_3:12501277-12501296 None:intergenic 25.0%
!!! TATTTTTTATGTTGACCAGA+AGG + chr1_3:12501414-12501433 Msa0104550:intron 25.0%
! TATAAAAAGATTCATCCTTC+TGG - chr1_3:12501432-12501451 None:intergenic 25.0%
!! AATCTTTTTATACAGTAAGC+TGG + chr1_3:12501440-12501459 Msa0104550:CDS 25.0%
!! ATCTTTTTATACAGTAAGCT+GGG + chr1_3:12501441-12501460 Msa0104550:CDS 25.0%
! CAATACTTAAGACTTCATTA+CGG - chr1_3:12501947-12501966 None:intergenic 25.0%
!! TAAGTATTGTGAGTGTATTA+TGG + chr1_3:12501958-12501977 Msa0104550:intron 25.0%
! CTTGATCAATTACCAAATTA+TGG + chr1_3:12502003-12502022 Msa0104550:intron 25.0%
! AGTAAGAAATAGAAGTTACT+CGG - chr1_3:12502062-12502081 None:intergenic 25.0%
!! TAACTTCTATTTCTTACTGT+AGG + chr1_3:12502064-12502083 Msa0104550:intron 25.0%
! GCAATCTTAAATATATCTGA+TGG - chr1_3:12502098-12502117 None:intergenic 25.0%
! TGGATAATACTGTTAAGATA+TGG + chr1_3:12502129-12502148 Msa0104550:CDS 25.0%
! ACTCAACTATAAGATATATC+AGG - chr1_3:12502221-12502240 None:intergenic 25.0%
! GATACCATCAATTACATTAT+GGG - chr1_3:12502256-12502275 None:intergenic 25.0%
!! TTCATCTTTTCTATATGGTA+CGG - chr1_3:12502278-12502297 None:intergenic 25.0%
!! TAGCTTTCATCTTTTCTATA+TGG - chr1_3:12502283-12502302 None:intergenic 25.0%
!!! AGCAATCATAATATTTTTGG+GGG - chr1_3:12502330-12502349 None:intergenic 25.0%
!! AGATTTTAAATTGACAACAG+TGG + chr1_3:12502465-12502484 Msa0104550:intron 25.0%
! AATGAAAAAGACAACACATT+AGG - chr1_3:12502498-12502517 None:intergenic 25.0%
! CAATAAAATGAAGGTAACAA+TGG - chr1_3:12502526-12502545 None:intergenic 25.0%
! AGAAATCTGCAATAAAATGA+AGG - chr1_3:12502535-12502554 None:intergenic 25.0%
!! TTCATTTTATTGCAGATTTC+TGG + chr1_3:12502534-12502553 Msa0104550:intron 25.0%
!! TCATTTTATTGCAGATTTCT+GGG + chr1_3:12502535-12502554 Msa0104550:intron 25.0%
! AAGACTGTGTAAATAGTAAT+GGG - chr1_3:12502876-12502895 None:intergenic 25.0%
! AAAGACTGTGTAAATAGTAA+TGG - chr1_3:12502877-12502896 None:intergenic 25.0%
!!! TTCCTTTTACTGTTTCTATT+TGG - chr1_3:12502906-12502925 None:intergenic 25.0%
! ATTGGATTTCAATTAGAAGT+TGG + chr1_3:12502943-12502962 Msa0104550:intron 25.0%
!! TGATTTATAACTGATTCATG+AGG - chr1_3:12503012-12503031 None:intergenic 25.0%
! TTTCTGTCTAATAATAGCAT+TGG - chr1_3:12503042-12503061 None:intergenic 25.0%
! AATGCTTAAACCAAATGAAA+AGG - chr1_3:12503185-12503204 None:intergenic 25.0%
!!! TCCGTTTTTTCTTTTTCTTT+TGG + chr1_3:12503794-12503813 Msa0104550:intron 25.0%
! ACTAACTTTGCAATAAGAAT+AGG - chr1_3:12503876-12503895 None:intergenic 25.0%
! CATCAAAATAAGTTAAGCTT+CGG - chr1_3:12504172-12504191 None:intergenic 25.0%
! TGCACTATTATTTCATAAGT+TGG + chr1_3:12504515-12504534 Msa0104550:three_prime_UTR 25.0%
! AGATGTAATTTATAACTCAG+AGG + chr1_3:12504596-12504615 Msa0104550:three_prime_UTR 25.0%
! GATGTAATTTATAACTCAGA+GGG + chr1_3:12504597-12504616 Msa0104550:three_prime_UTR 25.0%
!!! TTGTTTTTTGTTTTGTGAAC+TGG - chr1_3:12504715-12504734 None:intergenic 25.0%
!! AATACTTTTCCAAACATAGT+TGG + chr1_3:12504734-12504753 Msa0104550:three_prime_UTR 25.0%
! AAACTGTTTAAGGAGTAAAA+TGG - chr1_3:12504831-12504850 None:intergenic 25.0%
! TCGACAATAAGATTTATTGA+CGG + chr1_3:12505369-12505388 Msa0104550:intron 25.0%
! GAATTAACAATCATCAAACT+TGG + chr1_3:12505392-12505411 Msa0104550:intron 25.0%
! AAATCGAACAACTAATCAAA+TGG + chr1_3:12505473-12505492 Msa0104550:intron 25.0%
!!! GATTTTAATGTTACATAGGT+TGG - chr1_3:12505926-12505945 Msa0104560:intron 25.0%
! TTAACCTAATTTAAATAGGC+TGG - chr1_3:12505959-12505978 Msa0104560:intron 25.0%
! AACAAATTCATCAAAGAAAG+AGG - chr1_3:12506084-12506103 Msa0104560:CDS 25.0%
!! AAACAATGTTTTTCCCAATT+TGG + chr1_3:12506259-12506278 Msa0104550:three_prime_UTR 25.0%
!! AACAATGTTTTTCCCAATTT+GGG + chr1_3:12506260-12506279 Msa0104550:three_prime_UTR 25.0%
! TTAAGATTTGAGTATGCATT+TGG + chr1_3:12506408-12506427 Msa0104550:three_prime_UTR 25.0%
! TAGAAGTAAAGCAAATAGTA+CGG + chr1_3:12506480-12506499 Msa0104550:three_prime_UTR 25.0%
CTGCATATTTCAAAACAAGT+TGG + chr1_3:12500872-12500891 Msa0104550:five_prime_UTR 30.0%
TTGAAAACAACAGCATATAG+AGG - chr1_3:12501009-12501028 None:intergenic 30.0%
!! CTTTTGAGTGCAAAGAAAAA+AGG - chr1_3:12501128-12501147 None:intergenic 30.0%
ACTATTTATCAATGCCTTCA+AGG + chr1_3:12501188-12501207 Msa0104550:CDS 30.0%
!! CTTTTGTAGATGATGATGTA+AGG + chr1_3:12501234-12501253 Msa0104550:intron 30.0%
AATAAACACCACAATCAAAG+TGG - chr1_3:12501320-12501339 None:intergenic 30.0%
GGTATAATTCGAGTCATTAA+TGG + chr1_3:12501511-12501530 Msa0104550:CDS 30.0%
!! TTTGTTAGTTTGGAGTTTTG+TGG + chr1_3:12501577-12501596 Msa0104550:intron 30.0%
TTGAGTCCTGATTTCATTTA+TGG - chr1_3:12501737-12501756 None:intergenic 30.0%
AATAACTTATAAGGTTGACC+AGG + chr1_3:12501851-12501870 Msa0104550:intron 30.0%
!!! GTATGTGTTTTGATATTTGC+TGG + chr1_3:12501909-12501928 Msa0104550:CDS 30.0%
TGGTAATTGATCAAGTCAAA+GGG - chr1_3:12501998-12502017 None:intergenic 30.0%
! TTGGTAATTGATCAAGTCAA+AGG - chr1_3:12501999-12502018 None:intergenic 30.0%
GTAAGAAATAGAAGTTACTC+GGG - chr1_3:12502061-12502080 None:intergenic 30.0%
! ATATTTAAGATTGCCAGTTG+TGG + chr1_3:12502104-12502123 Msa0104550:CDS 30.0%
TGTTAAGATATGGTCTATGA+AGG + chr1_3:12502139-12502158 Msa0104550:CDS 30.0%
GTTAAGATATGGTCTATGAA+GGG + chr1_3:12502140-12502159 Msa0104550:CDS 30.0%
!!! TGAGGCATTTAGTTTTATGT+CGG + chr1_3:12502163-12502182 Msa0104550:intron 30.0%
CAATTACATTATGGGAGATA+CGG - chr1_3:12502248-12502267 None:intergenic 30.0%
ATCTCCCATAATGTAATTGA+TGG + chr1_3:12502249-12502268 Msa0104550:intron 30.0%
GGATACCATCAATTACATTA+TGG - chr1_3:12502257-12502276 None:intergenic 30.0%
! ATACTTTTGGATGTGATAAC+TGG - chr1_3:12502370-12502389 None:intergenic 30.0%
! CATTTTATTGCAGATTTCTG+GGG + chr1_3:12502536-12502555 Msa0104550:intron 30.0%
ATGTAGAACAATCATTCACA+TGG + chr1_3:12502561-12502580 Msa0104550:CDS 30.0%
! TATTTTGTGGGAAACTTAGA+CGG - chr1_3:12502596-12502615 None:intergenic 30.0%
! ATTACGTTGATTGTACTAGA+TGG + chr1_3:12502731-12502750 Msa0104550:CDS 30.0%
GAAAATCAAACTCTTTCCAA+CGG - chr1_3:12502816-12502835 None:intergenic 30.0%
!! GAAAGAGTTTGATTTTCTGT+AGG + chr1_3:12502819-12502838 Msa0104550:intron 30.0%
GAATCATGTAAATTTCAGCT+AGG - chr1_3:12502854-12502873 None:intergenic 30.0%
TGCCAAATAGAAACAGTAAA+AGG + chr1_3:12502901-12502920 Msa0104550:intron 30.0%
!!! ACCATTTTTTGGTATCACTT+TGG + chr1_3:12503072-12503091 Msa0104550:intron 30.0%
ACCAAAGTGATACCAAAAAA+TGG - chr1_3:12503076-12503095 None:intergenic 30.0%
GGGAATTATTGGAACTTTAT+TGG + chr1_3:12503107-12503126 Msa0104550:intron 30.0%
TATTGGAACTTTATTGGACT+TGG + chr1_3:12503113-12503132 Msa0104550:intron 30.0%
!! ATATTCAAATCACTGACTCA+TGG - chr1_3:12503312-12503331 None:intergenic 30.0%
ATATATCACATTCAGGAACA+GGG - chr1_3:12503544-12503563 None:intergenic 30.0%
ATGAACCATATATCACATTC+AGG - chr1_3:12503551-12503570 None:intergenic 30.0%
TTCTTGTGATTTCCATTTCA+AGG + chr1_3:12503577-12503596 Msa0104550:CDS 30.0%
AACTTTGCAATAAGAATAGG+AGG - chr1_3:12503873-12503892 None:intergenic 30.0%
! TTTATGGATTTGACTAGTCA+TGG + chr1_3:12504244-12504263 Msa0104550:three_prime_UTR 30.0%
TTGTAACAGTTGTAGTATGA+GGG - chr1_3:12504483-12504502 None:intergenic 30.0%
ATTGTAACAGTTGTAGTATG+AGG - chr1_3:12504484-12504503 None:intergenic 30.0%
! ACATCTTAGTTGTCTTTTAC+AGG - chr1_3:12504582-12504601 None:intergenic 30.0%
! CATTTTGAACCAACTATGTT+TGG - chr1_3:12504746-12504765 None:intergenic 30.0%
TTGAAATGGTACTTAGACAA+AGG - chr1_3:12504864-12504883 Msa0104560:CDS 30.0%
ATTTCCATTATTCCTTTGTC+AGG - chr1_3:12505309-12505328 Msa0104560:intron 30.0%
CGACAATAAGATTTATTGAC+GGG + chr1_3:12505370-12505389 Msa0104550:intron 30.0%
! AAACCATAGATTGGTCAAAA+TGG - chr1_3:12505762-12505781 Msa0104560:CDS 30.0%
TTGTTAAGATTACACACCTT+AGG + chr1_3:12506016-12506035 Msa0104550:intron 30.0%
AAAGGGTTATAAGAATGTTG+AGG - chr1_3:12506163-12506182 Msa0104560:CDS 30.0%
! ATTTTTCCGACACATCTATT+TGG + chr1_3:12506204-12506223 Msa0104550:three_prime_UTR 30.0%
! TTTTCACCAAATAGATGTGT+CGG - chr1_3:12506213-12506232 Msa0104560:CDS 30.0%
AACACTTTATTATGCCTTAG+AGG + chr1_3:12506231-12506250 Msa0104550:three_prime_UTR 30.0%
!! ACATTGTTTTTCAACCTCTA+AGG - chr1_3:12506248-12506267 Msa0104560:CDS 30.0%
! CAATTTTACCAACCCAAATT+GGG - chr1_3:12506275-12506294 Msa0104560:CDS 30.0%
! TCAATTTTACCAACCCAAAT+TGG - chr1_3:12506276-12506295 Msa0104560:CDS 30.0%
GTGAACAAAATAAGCTACTT+TGG + chr1_3:12506325-12506344 Msa0104550:three_prime_UTR 30.0%
! AACAAAATAAGCTACTTTGG+AGG + chr1_3:12506328-12506347 Msa0104550:three_prime_UTR 30.0%
! ACAAAATAAGCTACTTTGGA+GGG + chr1_3:12506329-12506348 Msa0104550:three_prime_UTR 30.0%
ATTAGTCAAAGTTGTTGAGA+AGG + chr1_3:12506359-12506378 Msa0104550:three_prime_UTR 30.0%
! AATTGCACTGCTTGTTAACA+GGG + chr1_3:12500789-12500808 Msa0104550:five_prime_UTR 35.0%
GACAACAACAATTCTTCAGT+CGG + chr1_3:12500820-12500839 Msa0104550:five_prime_UTR 35.0%
TCGGTAACTTGAATTCTTCA+AGG + chr1_3:12500938-12500957 Msa0104550:CDS 35.0%
ATTTATCAATGCCTTCAAGG+AGG + chr1_3:12501191-12501210 Msa0104550:CDS 35.0%
GTAAGTGAAATAACAGAGAG+AGG - chr1_3:12501806-12501825 None:intergenic 35.0%
GGTAATTGATCAAGTCAAAG+GGG - chr1_3:12501997-12502016 None:intergenic 35.0%
GGATAAACAAAAGCAACCAA+TGG - chr1_3:12502200-12502219 None:intergenic 35.0%
GAAAAGATGAAAGCTATACC+AGG + chr1_3:12502287-12502306 Msa0104550:intron 35.0%
! GAAAATCATGTGACTTTTCC+TGG - chr1_3:12502308-12502327 None:intergenic 35.0%
!!! ATTTTGAGATTGACTCTGTG+TGG - chr1_3:12502422-12502441 None:intergenic 35.0%
! ATTTTGTGGGAAACTTAGAC+GGG - chr1_3:12502595-12502614 None:intergenic 35.0%
! GGAAACTGCACATATTTTGT+GGG - chr1_3:12502608-12502627 None:intergenic 35.0%
! AGGAAACTGCACATATTTTG+TGG - chr1_3:12502609-12502628 None:intergenic 35.0%
GTTGATTGTACTAGATGGTT+GGG + chr1_3:12502736-12502755 Msa0104550:CDS 35.0%
TTGATTGTACTAGATGGTTG+GGG + chr1_3:12502737-12502756 Msa0104550:CDS 35.0%
TTCAATTAGAAGTTGGAACG+TGG + chr1_3:12502950-12502969 Msa0104550:intron 35.0%
! ACGTGGTTTAAGTTTGGAAA+TGG + chr1_3:12502967-12502986 Msa0104550:intron 35.0%
TTGGAAATGGTATGCTTCAA+TGG + chr1_3:12502980-12502999 Msa0104550:intron 35.0%
! ATTTTATTGAAGGGTTGCAG+AGG - chr1_3:12503217-12503236 None:intergenic 35.0%
!! GGTCCATTTTAGTGATAACT+TGG + chr1_3:12503286-12503305 Msa0104550:intron 35.0%
TGGCCAAGTTATCACTAAAA+TGG - chr1_3:12503292-12503311 None:intergenic 35.0%
TTGACCATGAAATTGTCTTG+TGG + chr1_3:12503372-12503391 Msa0104550:CDS 35.0%
TGACCATGAAATTGTCTTGT+GGG + chr1_3:12503373-12503392 Msa0104550:CDS 35.0%
AAAAGTGAAGGAACAATCTC+CGG + chr1_3:12503400-12503419 Msa0104550:CDS 35.0%
! CTTCAGCCTTTTCATTGTTT+GGG + chr1_3:12503485-12503504 Msa0104550:intron 35.0%
TGAACACCCAAACAATGAAA+AGG - chr1_3:12503494-12503513 None:intergenic 35.0%
! TTTTCATTGTTTGGGTGTTC+AGG + chr1_3:12503493-12503512 Msa0104550:intron 35.0%
TTTCATTGTTTGGGTGTTCA+GGG + chr1_3:12503494-12503513 Msa0104550:intron 35.0%
CATATATCACATTCAGGAAC+AGG - chr1_3:12503545-12503564 None:intergenic 35.0%
CTGTTCCTGAATGTGATATA+TGG + chr1_3:12503543-12503562 Msa0104550:CDS 35.0%
! GGAAGGGAAGATTTTTCTTT+GGG + chr1_3:12503833-12503852 Msa0104550:CDS 35.0%
CTCAATCAAAATCTCCAATC+AGG + chr1_3:12503976-12503995 Msa0104550:CDS 35.0%
AAGAAATCACCTTCCATCAT+GGG - chr1_3:12504015-12504034 None:intergenic 35.0%
ATAAACCAGAAAGCTCATGT+TGG - chr1_3:12504229-12504248 None:intergenic 35.0%
!! AACATGAGCTTTCTGGTTTA+TGG + chr1_3:12504228-12504247 Msa0104550:three_prime_UTR 35.0%
AGTTTAGTCGATCTATTGTG+TGG + chr1_3:12504288-12504307 Msa0104550:three_prime_UTR 35.0%
! TGCTGCTTCAAAACTGTTTA+AGG - chr1_3:12504841-12504860 Msa0104560:CDS 35.0%
AAAAGGTTTCACCTCTTGAA+GGG - chr1_3:12504890-12504909 Msa0104560:CDS 35.0%
GTGAAAGTAATTCTCTCTGA+TGG + chr1_3:12505026-12505045 Msa0104550:three_prime_UTR 35.0%
AAAGTAATTCTCTCTGATGG+TGG + chr1_3:12505029-12505048 Msa0104550:three_prime_UTR 35.0%
AAATTTGATCTCATGCTCCT+AGG - chr1_3:12505152-12505171 Msa0104560:CDS 35.0%
!! AGGAGCATGAGATCAAATTT+TGG + chr1_3:12505152-12505171 Msa0104550:three_prime_UTR 35.0%
! TGCTTTTAACCAAACGTCTT+AGG + chr1_3:12505204-12505223 Msa0104550:three_prime_UTR 35.0%
! GCTTTTAACCAAACGTCTTA+GGG + chr1_3:12505205-12505224 Msa0104550:three_prime_UTR 35.0%
CTTATTGTCGATCTTTAGTG+AGG - chr1_3:12505360-12505379 Msa0104560:intron 35.0%
TGCTTGAAGAAGAATGATGA+TGG - chr1_3:12505621-12505640 Msa0104560:intron 35.0%
TTCAAGCAAAACAATCAACC+TGG + chr1_3:12505633-12505652 Msa0104550:intron 35.0%
AATTATAAGCTTGCCAGTGA+TGG - chr1_3:12505688-12505707 Msa0104560:CDS 35.0%
! GTCAAAATGGCATGTTTTCT+GGG - chr1_3:12505749-12505768 Msa0104560:CDS 35.0%
!!! ATGCCATTTTGACCAATCTA+TGG + chr1_3:12505756-12505775 Msa0104550:three_prime_UTR 35.0%
TCCACCAGCCTATTTAAATT+AGG + chr1_3:12505952-12505971 Msa0104550:intron 35.0%
ACCTAATTTAAATAGGCTGG+TGG - chr1_3:12505956-12505975 Msa0104560:intron 35.0%
GATCATTGATCAAGTACCTA+AGG - chr1_3:12506035-12506054 Msa0104560:CDS 35.0%
!! TATTTCACTGTTGCTTTGTC+TGG - chr1_3:12506060-12506079 Msa0104560:CDS 35.0%
! GAATGTTGAGGTTTTCAGTA+AGG - chr1_3:12506151-12506170 Msa0104560:CDS 35.0%
!! AATAGAGGCATCACTTAAGT+GGG - chr1_3:12506187-12506206 Msa0104560:CDS 35.0%
!! AAATAGAGGCATCACTTAAG+TGG - chr1_3:12506188-12506207 Msa0104560:CDS 35.0%
TAGATGTGTCGGAAAAATAG+AGG - chr1_3:12506202-12506221 Msa0104560:CDS 35.0%
! ATGTTTTTCCCAATTTGGGT+TGG + chr1_3:12506264-12506283 Msa0104550:three_prime_UTR 35.0%
! ATTGCACTGCTTGTTAACAG+GGG + chr1_3:12500790-12500809 Msa0104550:five_prime_UTR 40.0%
AACAATTCTTCAGTCGGAAG+TGG + chr1_3:12500826-12500845 Msa0104550:five_prime_UTR 40.0%
AAACACCACAATCAAAGTGG+TGG - chr1_3:12501317-12501336 None:intergenic 40.0%
TAGCGATGAGAAGTTACACA+AGG + chr1_3:12501534-12501553 Msa0104550:CDS 40.0%
ACAAAACTCTGTAGGGAGAA+GGG - chr1_3:12501700-12501719 None:intergenic 40.0%
AACAAAACTCTGTAGGGAGA+AGG - chr1_3:12501701-12501720 None:intergenic 40.0%
!! TTCTCCCTACAGAGTTTTGT+TGG + chr1_3:12501700-12501719 Msa0104550:intron 40.0%
ATGGCCAACAAAACTCTGTA+GGG - chr1_3:12501707-12501726 None:intergenic 40.0%
!!! TACAGAGTTTTGTTGGCCAT+GGG + chr1_3:12501707-12501726 Msa0104550:intron 40.0%
TTTCATTTATGGAGTCCCCA+TGG - chr1_3:12501726-12501745 None:intergenic 40.0%
GGGACTCCATAAATGAAATC+AGG + chr1_3:12501728-12501747 Msa0104550:CDS 40.0%
!! GTTTTGATATTTGCTGGAGC+TGG + chr1_3:12501915-12501934 Msa0104550:CDS 40.0%
AGTATTATCCATGCCACAAC+TGG - chr1_3:12502120-12502139 None:intergenic 40.0%
! CGTTGATTGTACTAGATGGT+TGG + chr1_3:12502735-12502754 Msa0104550:CDS 40.0%
TGATTGTACTAGATGGTTGG+GGG + chr1_3:12502738-12502757 Msa0104550:CDS 40.0%
! GTTGGAACGTGGTTTAAGTT+TGG + chr1_3:12502961-12502980 Msa0104550:intron 40.0%
GCTGAGTACATGGGAATTAT+TGG + chr1_3:12503096-12503115 Msa0104550:intron 40.0%
AGTTGCAAGAGAGAAAGTTG+AGG + chr1_3:12503255-12503274 Msa0104550:intron 40.0%
! AGAGAGAAAGTTGAGGCATT+AGG + chr1_3:12503262-12503281 Msa0104550:intron 40.0%
CAATTTCATGGTCAACACTC+TGG - chr1_3:12503367-12503386 None:intergenic 40.0%
GTTCCCACAAGACAATTTCA+TGG - chr1_3:12503379-12503398 None:intergenic 40.0%
! GGAGATTGTTCCTTCACTTT+TGG - chr1_3:12503401-12503420 None:intergenic 40.0%
AAAGTGAAGGAACAATCTCC+GGG + chr1_3:12503401-12503420 Msa0104550:CDS 40.0%
! GCTTCAGCCTTTTCATTGTT+TGG + chr1_3:12503484-12503503 Msa0104550:intron 40.0%
CTATTGCACATGCCTTGAAA+TGG - chr1_3:12503592-12503611 None:intergenic 40.0%
CATTTCAAGGCATGTGCAAT+AGG + chr1_3:12503590-12503609 Msa0104550:CDS 40.0%
AAGGCATGTGCAATAGGTAA+GGG + chr1_3:12503596-12503615 Msa0104550:intron 40.0%
TCTAACGTACAGCATTAGTC+CGG + chr1_3:12503660-12503679 Msa0104550:intron 40.0%
CATATACCTCTTGTCACTAC+CGG - chr1_3:12503682-12503701 None:intergenic 40.0%
! CTTTTTCTTTTGGATCTGCC+AGG + chr1_3:12503804-12503823 Msa0104550:intron 40.0%
! GGGAAGGGAAGATTTTTCTT+TGG + chr1_3:12503832-12503851 Msa0104550:CDS 40.0%
GAAGAAATCACCTTCCATCA+TGG - chr1_3:12504016-12504035 None:intergenic 40.0%
! ATTTTATGTTGCTGCGACGA+TGG + chr1_3:12504117-12504136 Msa0104550:CDS 40.0%
GTAATCCAACATGAGCTTTC+TGG + chr1_3:12504221-12504240 Msa0104550:three_prime_UTR 40.0%
TCGACTAAACTCGATAAACC+AGG - chr1_3:12504279-12504298 None:intergenic 40.0%
CTCTTGAAGGGGAATTGAAA+TGG - chr1_3:12504878-12504897 Msa0104560:CDS 40.0%
CATTTCAATTCCCCTTCAAG+AGG + chr1_3:12504876-12504895 Msa0104550:three_prime_UTR 40.0%
AAAGGTTTCACCTCTTGAAG+GGG - chr1_3:12504889-12504908 Msa0104560:CDS 40.0%
GAAAAGGTTTCACCTCTTGA+AGG - chr1_3:12504891-12504910 Msa0104560:CDS 40.0%
! AGAGGTGAAACCTTTTCAAC+AGG + chr1_3:12504894-12504913 Msa0104550:three_prime_UTR 40.0%
TGTCATGTTGCCTGTTGAAA+AGG - chr1_3:12504907-12504926 Msa0104560:CDS 40.0%
TTCTTCCAATGTTGCAATGG+TGG - chr1_3:12504988-12505007 Msa0104560:CDS 40.0%
TGCTTCTTCCAATGTTGCAA+TGG - chr1_3:12504991-12505010 Msa0104560:CDS 40.0%
!! TTGGAAGAAGCATTGATCAC+TGG + chr1_3:12504999-12505018 Msa0104550:three_prime_UTR 40.0%
!!! ATTCTCTCTGATGGTGGTTT+TGG + chr1_3:12505035-12505054 Msa0104550:three_prime_UTR 40.0%
TAACCCATTTCTGATCCTCT+TGG + chr1_3:12505075-12505094 Msa0104550:three_prime_UTR 40.0%
TCTCCAAGAGGATCAGAAAT+GGG - chr1_3:12505081-12505100 Msa0104560:CDS 40.0%
TTCTCCAAGAGGATCAGAAA+TGG - chr1_3:12505082-12505101 Msa0104560:CDS 40.0%
CATGTTGCATCTTTATTCCC+AGG - chr1_3:12505113-12505132 Msa0104560:CDS 40.0%
AAAGATGCAACATGTCCATC+TGG + chr1_3:12505119-12505138 Msa0104550:three_prime_UTR 40.0%
TGAAACAACCCTAAGACGTT+TGG - chr1_3:12505216-12505235 Msa0104560:CDS 40.0%
TCAATGGCATAAACGTTGAG+AGG + chr1_3:12505272-12505291 Msa0104550:three_prime_UTR 40.0%
TAAACGTTGAGAGGAGGAAT+TGG + chr1_3:12505281-12505300 Msa0104550:three_prime_UTR 40.0%
ATTACGATATCATAGGTGCG+AGG - chr1_3:12505424-12505443 Msa0104560:intron 40.0%
TACTAGCATATCGTGACATG+TGG - chr1_3:12505519-12505538 Msa0104560:intron 40.0%
AGGTAATTAACTCATGTGCC+AGG - chr1_3:12505654-12505673 Msa0104560:intron 40.0%
GGCACATGAGTTAATTACCT+TGG + chr1_3:12505654-12505673 Msa0104550:intron 40.0%
! GGTCAAAATGGCATGTTTTC+TGG - chr1_3:12505750-12505769 Msa0104560:CDS 40.0%
GCATCACTTAAGTGGGAAAA+GGG - chr1_3:12506180-12506199 Msa0104560:CDS 40.0%
AGATACCACGATACCACAAA+TGG - chr1_3:12506385-12506404 None:intergenic 40.0%
! TTGCACTGCTTGTTAACAGG+GGG + chr1_3:12500791-12500810 Msa0104550:five_prime_UTR 45.0%
TAGTTTGGGAACTGAACCAG+TGG + chr1_3:12500915-12500934 Msa0104550:CDS 45.0%
! GAATTCAAGTTACCGACCAC+TGG - chr1_3:12500934-12500953 None:intergenic 45.0%
TGGCGAAAACGTTGAAGTAG+CGG - chr1_3:12501044-12501063 None:intergenic 45.0%
! TTCAACGTTTTCGCCACAGT+TGG + chr1_3:12501048-12501067 Msa0104550:CDS 45.0%
CAGCAATAACTCCTCCTTGA+AGG - chr1_3:12501205-12501224 None:intergenic 45.0%
GTTAGACACGGAAGAGAGTA+GGG - chr1_3:12501265-12501284 None:intergenic 45.0%
TGTTAGACACGGAAGAGAGT+AGG - chr1_3:12501266-12501285 None:intergenic 45.0%
CTCTACCACCACTTTGATTG+TGG + chr1_3:12501309-12501328 Msa0104550:intron 45.0%
CATGGCCAACAAAACTCTGT+AGG - chr1_3:12501708-12501727 None:intergenic 45.0%
!!! CTACAGAGTTTTGTTGGCCA+TGG + chr1_3:12501706-12501725 Msa0104550:intron 45.0%
!!! ACAGAGTTTTGTTGGCCATG+GGG + chr1_3:12501708-12501727 Msa0104550:intron 45.0%
AAATCAGGACTCAAGCGATG+AGG + chr1_3:12501743-12501762 Msa0104550:CDS 45.0%
CTAGCAGATATCACAAGTGC+TGG - chr1_3:12501769-12501788 None:intergenic 45.0%
TAAGGTTGACCAGGATGAGT+CGG + chr1_3:12501860-12501879 Msa0104550:intron 45.0%
CGGTTATGGAATGTTCACAC+TGG + chr1_3:12501885-12501904 Msa0104550:CDS 45.0%
! TTGATATTTGCTGGAGCTGG+AGG + chr1_3:12501918-12501937 Msa0104550:CDS 45.0%
TAAGATTGCCAGTTGTGGCA+TGG + chr1_3:12502109-12502128 Msa0104550:CDS 45.0%
GATATGGTCTATGAAGGGTG+AGG + chr1_3:12502145-12502164 Msa0104550:intron 45.0%
GTCGGCTGCTATTATTCCAT+TGG + chr1_3:12502181-12502200 Msa0104550:intron 45.0%
GGGGGAATTTATCCTCTCAA+AGG + chr1_3:12502756-12502775 Msa0104550:CDS 45.0%
AGCAAACACTCACCTTTGAG+AGG - chr1_3:12502771-12502790 None:intergenic 45.0%
!! TCACTTTGGTGCTGAGTACA+TGG + chr1_3:12503086-12503105 Msa0104550:intron 45.0%
!! CACTTTGGTGCTGAGTACAT+GGG + chr1_3:12503087-12503106 Msa0104550:intron 45.0%
! GAGAAAGTTGAGGCATTAGG+TGG + chr1_3:12503265-12503284 Msa0104550:intron 45.0%
CTTGTGGGAACCAAAAGTGA+AGG + chr1_3:12503388-12503407 Msa0104550:CDS 45.0%
AAGTGAAGGAACAATCTCCG+GGG + chr1_3:12503402-12503421 Msa0104550:CDS 45.0%
!! TAGTTCTAACTAACCTCCCC+CGG - chr1_3:12503422-12503441 None:intergenic 45.0%
CAAGGCATGTGCAATAGGTA+AGG + chr1_3:12503595-12503614 Msa0104550:intron 45.0%
ATTAGTCCGGTAGTGACAAG+AGG + chr1_3:12503673-12503692 Msa0104550:intron 45.0%
TTGAGTATGCACCAACCTGA+AGG - chr1_3:12503961-12503980 None:intergenic 45.0%
CTCAAGTGCAGTGTAAACTG+CGG + chr1_3:12504941-12504960 Msa0104550:three_prime_UTR 45.0%
! AATGTTGCAATGGTGGTGAC+TGG - chr1_3:12504981-12505000 Msa0104560:CDS 45.0%
AGTCACCACCATTGCAACAT+TGG + chr1_3:12504980-12504999 Msa0104550:three_prime_UTR 45.0%
GATCTCATGCTCCTAGGTAT+GGG - chr1_3:12505146-12505165 Msa0104560:CDS 45.0%
TGATCTCATGCTCCTAGGTA+TGG - chr1_3:12505147-12505166 Msa0104560:CDS 45.0%
TAAACATCAGCTGCTCCATC+AGG + chr1_3:12505236-12505255 Msa0104550:three_prime_UTR 45.0%
AGGTGGTAGGGAATCATCAA+TGG + chr1_3:12505256-12505275 Msa0104550:three_prime_UTR 45.0%
ATGGCATAAACGTTGAGAGG+AGG + chr1_3:12505275-12505294 Msa0104550:three_prime_UTR 45.0%
GGCACCTGACAAAGGAATAA+TGG + chr1_3:12505302-12505321 Msa0104550:intron 45.0%
!! CAGTGATGGATTTCTCTCCA+AGG - chr1_3:12505674-12505693 Msa0104560:CDS 45.0%
CTTGGAGAGAAATCCATCAC+TGG + chr1_3:12505672-12505691 Msa0104550:three_prime_UTR 45.0%
!! TTCACTGTTGCTTTGTCTGG+TGG - chr1_3:12506057-12506076 Msa0104560:CDS 45.0%
! GGAACATCTTGCTGTGTCAT+TGG - chr1_3:12506130-12506149 Msa0104560:CDS 45.0%
GGCATCACTTAAGTGGGAAA+AGG - chr1_3:12506181-12506200 Msa0104560:CDS 45.0%
GTTGTTGAGAAGGCCATTTG+TGG + chr1_3:12506369-12506388 Msa0104550:three_prime_UTR 45.0%
! ACTGCTTGTTAACAGGGGGT+GGG + chr1_3:12500795-12500814 Msa0104550:five_prime_UTR 50.0%
TTGGGAACTGAACCAGTGGT+CGG + chr1_3:12500919-12500938 Msa0104550:CDS 50.0%
GGCGAAAACGTTGAAGTAGC+GGG - chr1_3:12501043-12501062 None:intergenic 50.0%
! AACGTTTTCGCCACAGTTGG+TGG + chr1_3:12501051-12501070 Msa0104550:CDS 50.0%
AGCTGGGCATGCAATACCAA+TGG + chr1_3:12501457-12501476 Msa0104550:CDS 50.0%
GCTGGGCATGCAATACCAAT+GGG + chr1_3:12501458-12501477 Msa0104550:CDS 50.0%
CTGGGCATGCAATACCAATG+GGG + chr1_3:12501459-12501478 Msa0104550:CDS 50.0%
!! GGGAGAAGGGTGTCATTTCA+AGG - chr1_3:12501687-12501706 None:intergenic 50.0%
TTGACCAGGATGAGTCGGTT+CGG + chr1_3:12501865-12501884 Msa0104550:intron 50.0%
! ATAACCGAACCGACTCATCC+TGG - chr1_3:12501872-12501891 None:intergenic 50.0%
!! AGGATGAGTCGGTTCGGTTA+TGG + chr1_3:12501871-12501890 Msa0104550:intron 50.0%
AACGGCAAGTAGACTGACAC+TGG - chr1_3:12502798-12502817 None:intergenic 50.0%
AGTGTCAGTCTACTTGCCGT+TGG + chr1_3:12502797-12502816 Msa0104550:intron 50.0%
AGTGAAGGAACAATCTCCGG+GGG + chr1_3:12503403-12503422 Msa0104550:CDS 50.0%
! TTTTGGATCTGCCAGGCAAC+AGG + chr1_3:12503811-12503830 Msa0104550:intron 50.0%
TTTGGATCTGCCAGGCAACA+GGG + chr1_3:12503812-12503831 Msa0104550:intron 50.0%
GCTAAGTGTGAGCTACCTTC+AGG + chr1_3:12503943-12503962 Msa0104550:intron 50.0%
AGTGTGAGCTACCTTCAGGT+TGG + chr1_3:12503947-12503966 Msa0104550:intron 50.0%
GACAGAGCAGTTTGCCTGAT+TGG - chr1_3:12503993-12504012 None:intergenic 50.0%
CAAACTGCTCTGTCCCATGA+TGG + chr1_3:12503999-12504018 Msa0104550:CDS 50.0%
GCTGCGACGATGGAACAATA+TGG + chr1_3:12504127-12504146 Msa0104550:CDS 50.0%
ACGATGGAACAATATGGCGC+TGG + chr1_3:12504133-12504152 Msa0104550:CDS 50.0%
CGATGGAACAATATGGCGCT+GGG + chr1_3:12504134-12504153 Msa0104550:CDS 50.0%
TAGTCATGGACACGAGAACC+TGG + chr1_3:12504258-12504277 Msa0104550:three_prime_UTR 50.0%
CGCAGTTTACACTGCACTTG+AGG - chr1_3:12504943-12504962 Msa0104560:CDS 50.0%
!!! GTGGTTTTGGTGAGTCAGTG+AGG + chr1_3:12505048-12505067 Msa0104550:three_prime_UTR 50.0%
AGGTCATGCTCTTCTCCAAG+AGG - chr1_3:12505093-12505112 Msa0104560:CDS 50.0%
! TCTTGGAGAAGAGCATGACC+TGG + chr1_3:12505092-12505111 Msa0104550:three_prime_UTR 50.0%
! CTTGGAGAAGAGCATGACCT+GGG + chr1_3:12505093-12505112 Msa0104550:three_prime_UTR 50.0%
GATGATTCCCTACCACCTGA+TGG - chr1_3:12505254-12505273 Msa0104560:CDS 50.0%
GAGGAATTGGCACCTGACAA+AGG + chr1_3:12505294-12505313 Msa0104550:intron 50.0%
GAAGGCCATTTGTGGTATCG+TGG + chr1_3:12506377-12506396 Msa0104550:three_prime_UTR 50.0%
! CACTGCTTGTTAACAGGGGG+TGG + chr1_3:12500794-12500813 Msa0104550:five_prime_UTR 55.0%
! CTGCTTGTTAACAGGGGGTG+GGG + chr1_3:12500796-12500815 Msa0104550:five_prime_UTR 55.0%
AGTCACCAATCGCCTCCAAG+AGG + chr1_3:12500975-12500994 Msa0104550:CDS 55.0%
GTCACCAATCGCCTCCAAGA+GGG + chr1_3:12500976-12500995 Msa0104550:CDS 55.0%
ATAGAGGACGCTTGCCCTCT+TGG - chr1_3:12500993-12501012 None:intergenic 55.0%
!! TCGCCACAGTTGGTGGCAAT+CGG + chr1_3:12501058-12501077 Msa0104550:CDS 55.0%
AACCCGATTGCCACCAACTG+TGG - chr1_3:12501064-12501083 None:intergenic 55.0%
ATCTGCCAGGCAACAGGGAA+GGG + chr1_3:12503817-12503836 Msa0104550:intron 55.0%
ATCTTCCCTTCCCTGTTGCC+TGG - chr1_3:12503825-12503844 None:intergenic 55.0%
! CTGCTCTGTCCCATGATGGA+AGG + chr1_3:12504003-12504022 Msa0104550:CDS 55.0%
GTCCATCTGGACCCATACCT+AGG + chr1_3:12505132-12505151 Msa0104550:three_prime_UTR 55.0%
CTCCTAGGTATGGGTCCAGA+TGG - chr1_3:12505137-12505156 Msa0104560:CDS 55.0%
ACATCAGCTGCTCCATCAGG+TGG + chr1_3:12505239-12505258 Msa0104550:three_prime_UTR 55.0%
AGCTGCTCCATCAGGTGGTA+GGG + chr1_3:12505244-12505263 Msa0104550:three_prime_UTR 55.0%
CTTGCCCTCTTGGAGGCGAT+TGG - chr1_3:12500983-12501002 None:intergenic 60.0%
!! CGCCACAGTTGGTGGCAATC+GGG + chr1_3:12501059-12501078 Msa0104550:CDS 60.0%
ACTCCTCCAGCCACAGCAAG+CGG - chr1_3:12501487-12501506 None:intergenic 60.0%
GCTGTGGCTGGAGGAGTCAA+TGG + chr1_3:12501490-12501509 Msa0104550:CDS 60.0%
GAAGGAACAATCTCCGGGGG+AGG + chr1_3:12503406-12503425 Msa0104550:CDS 60.0%
GATCTGCCAGGCAACAGGGA+AGG + chr1_3:12503816-12503835 Msa0104550:intron 60.0%
! TGCAATGGTGGTGACTGGCG+CGG - chr1_3:12504976-12504995 Msa0104560:CDS 60.0%
CAGCTGCTCCATCAGGTGGT+AGG + chr1_3:12505243-12505262 Msa0104550:three_prime_UTR 60.0%
GAGGACGCTTGCCCTCTTGG+AGG - chr1_3:12500990-12501009 None:intergenic 65.0%
CACAGCAAGCGGAGCCCCAT+TGG - chr1_3:12501476-12501495 None:intergenic 65.0%
! CAATGGGGCTCCGCTTGCTG+TGG + chr1_3:12501474-12501493 Msa0104550:CDS 65.0%
! GCAATGGTGGTGACTGGCGC+GGG - chr1_3:12504975-12504994 Msa0104560:CDS 65.0%
!! GCTCCGCTTGCTGTGGCTGG+AGG + chr1_3:12501481-12501500 Msa0104550:CDS 70.0%
!! GGGGCTCCGCTTGCTGTGGC+TGG + chr1_3:12501478-12501497 Msa0104550:CDS 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 12500789 12506508 12500789 ID=Msa0104550;Name=Msa0104550
chr1_3 mRNA 12500789 12506508 12500789 ID=Msa0104550-mRNA-1;Parent=Msa0104550;Name=Msa0104550-mRNA-1;_AED=0.08;_eAED=0.08;_QI=115|1|1|1|0.85|0.8|15|1739|371
chr1_3 exon 12500789 12501080 12500789 ID=Msa0104550-mRNA-1:exon:4976;Parent=Msa0104550-mRNA-1
chr1_3 exon 12501185 12501250 12501185 ID=Msa0104550-mRNA-1:exon:4977;Parent=Msa0104550-mRNA-1
chr1_3 exon 12501433 12501555 12501433 ID=Msa0104550-mRNA-1:exon:4978;Parent=Msa0104550-mRNA-1
chr1_3 exon 12501712 12501792 12501712 ID=Msa0104550-mRNA-1:exon:4979;Parent=Msa0104550-mRNA-1
chr1_3 exon 12501873 12501965 12501873 ID=Msa0104550-mRNA-1:exon:4980;Parent=Msa0104550-mRNA-1
chr1_3 exon 12502086 12502161 12502086 ID=Msa0104550-mRNA-1:exon:4981;Parent=Msa0104550-mRNA-1
chr1_3 exon 12502549 12502628 12502549 ID=Msa0104550-mRNA-1:exon:4982;Parent=Msa0104550-mRNA-1
chr1_3 exon 12502706 12502777 12502706 ID=Msa0104550-mRNA-1:exon:4983;Parent=Msa0104550-mRNA-1
chr1_3 exon 12503368 12503427 12503368 ID=Msa0104550-mRNA-1:exon:4984;Parent=Msa0104550-mRNA-1
chr1_3 exon 12503515 12503611 12503515 ID=Msa0104550-mRNA-1:exon:4985;Parent=Msa0104550-mRNA-1
chr1_3 exon 12503826 12503889 12503826 ID=Msa0104550-mRNA-1:exon:4986;Parent=Msa0104550-mRNA-1
chr1_3 exon 12503965 12504024 12503965 ID=Msa0104550-mRNA-1:exon:4987;Parent=Msa0104550-mRNA-1
chr1_3 exon 12504113 12505306 12504113 ID=Msa0104550-mRNA-1:exon:4988;Parent=Msa0104550-mRNA-1
chr1_3 exon 12505672 12505807 12505672 ID=Msa0104550-mRNA-1:exon:4989;Parent=Msa0104550-mRNA-1
chr1_3 exon 12506033 12506508 12506033 ID=Msa0104550-mRNA-1:exon:4990;Parent=Msa0104550-mRNA-1
chr1_3 five_prime_UTR 12500789 12500903 12500789 ID=Msa0104550-mRNA-1:five_prime_utr;Parent=Msa0104550-mRNA-1
chr1_3 CDS 12500904 12501080 12500904 ID=Msa0104550-mRNA-1:cds;Parent=Msa0104550-mRNA-1
chr1_3 CDS 12501185 12501250 12501185 ID=Msa0104550-mRNA-1:cds;Parent=Msa0104550-mRNA-1
chr1_3 CDS 12501433 12501555 12501433 ID=Msa0104550-mRNA-1:cds;Parent=Msa0104550-mRNA-1
chr1_3 CDS 12501712 12501792 12501712 ID=Msa0104550-mRNA-1:cds;Parent=Msa0104550-mRNA-1
chr1_3 CDS 12501873 12501965 12501873 ID=Msa0104550-mRNA-1:cds;Parent=Msa0104550-mRNA-1
chr1_3 CDS 12502086 12502161 12502086 ID=Msa0104550-mRNA-1:cds;Parent=Msa0104550-mRNA-1
chr1_3 CDS 12502549 12502628 12502549 ID=Msa0104550-mRNA-1:cds;Parent=Msa0104550-mRNA-1
chr1_3 CDS 12502706 12502777 12502706 ID=Msa0104550-mRNA-1:cds;Parent=Msa0104550-mRNA-1
chr1_3 CDS 12503368 12503427 12503368 ID=Msa0104550-mRNA-1:cds;Parent=Msa0104550-mRNA-1
chr1_3 CDS 12503515 12503611 12503515 ID=Msa0104550-mRNA-1:cds;Parent=Msa0104550-mRNA-1
chr1_3 CDS 12503826 12503889 12503826 ID=Msa0104550-mRNA-1:cds;Parent=Msa0104550-mRNA-1
chr1_3 CDS 12503965 12504024 12503965 ID=Msa0104550-mRNA-1:cds;Parent=Msa0104550-mRNA-1
chr1_3 CDS 12504113 12504179 12504113 ID=Msa0104550-mRNA-1:cds;Parent=Msa0104550-mRNA-1
chr1_3 three_prime_UTR 12504180 12505306 12504180 ID=Msa0104550-mRNA-1:three_prime_utr;Parent=Msa0104550-mRNA-1
chr1_3 three_prime_UTR 12505672 12505807 12505672 ID=Msa0104550-mRNA-1:three_prime_utr;Parent=Msa0104550-mRNA-1
chr1_3 three_prime_UTR 12506033 12506508 12506033 ID=Msa0104550-mRNA-1:three_prime_utr;Parent=Msa0104550-mRNA-1
Gene Sequence

>Msa0104550

ATGAAGTTGTTTAGTTTGGGAACTGAACCAGTGGTCGGTAACTTGAATTCTTCAAGGAAGAAAGAGTATAGAGTCACCAATCGCCTCCAAGAGGGCAAGCGTCCTCTATATGCTGTTGTTTTCAACTTCATCGACTCCCGCTACTTCAACGTTTTCGCCACAGTTGGTGGCAATCGGGTTACTATTTATCAATGCCTTCAAGGAGGAGTTATTGCTGTATTGCAGTCTTTTGTAGATGATGATAAGGATGAATCTTTTTATACAGTAAGCTGGGCATGCAATACCAATGGGGCTCCGCTTGCTGTGGCTGGAGGAGTCAATGGTATAATTCGAGTCATTAATGGTAGCGATGAGAAGTTACACAAGAGTTTTGTTGGCCATGGGGACTCCATAAATGAAATCAGGACTCAAGCGATGAGGCCAGCACTTGTGATATCTGCTAGCAAAGATGAGTCGGTTCGGTTATGGAATGTTCACACTGGAGTATGTGTTTTGATATTTGCTGGAGCTGGAGGACACCGTAATGAAGTCTTAAGTATTGATTTTCATCCATCAGATATATTTAAGATTGCCAGTTGTGGCATGGATAATACTGTTAAGATATGGTCTATGAAGGATTTCTGGGGCTATGTAGAACAATCATTCACATGGACAGATATCCCGTCTAAGTTTCCCACAAAATATGTGCAGTTTCCTATATTCAATGCTTCAGTTCATACAAATTACGTTGATTGTACTAGATGGTTGGGGGAATTTATCCTCTCAAAGAGTGTTGACCATGAAATTGTCTTGTGGGAACCAAAAGTGAAGGAACAATCTCCGGGGGAGGGCGCAGTCGACATACTTCAGAAATACCCTGTTCCTGAATGTGATATATGGTTCATCAAATTTTCTTGTGATTTCCATTTCAAGGCATGTGCAATAGGCAACAGGGAAGGGAAGATTTTTCTTTGGGATTTGCAGTCAAGTCCTCCTATTCTTATTGCAAAGTTGGTGCATACTCAATCAAAATCTCCAATCAGGCAAACTGCTCTGTCCCATGATGGAAGTACTATTTTATGTTGCTGCGACGATGGAACAATATGGCGCTGGGATGATGCAAACTCCGAAGCTTAA
Protein sequence

>Msa0104550

MKLFSLGTEPVVGNLNSSRKKEYRVTNRLQEGKRPLYAVVFNFIDSRYFNVFATVGGNRVTIYQCLQGGVIAVLQSFVDDDKDESFYTVSWACNTNGAPLAVAGGVNGIIRVINGSDEKLHKSFVGHGDSINEIRTQAMRPALVISASKDESVRLWNVHTGVCVLIFAGAGGHRNEVLSIDFHPSDIFKIASCGMDNTVKIWSMKDFWGYVEQSFTWTDIPSKFPTKYVQFPIFNASVHTNYVDCTRWLGEFILSKSVDHEIVLWEPKVKEQSPGEGAVDILQKYPVPECDIWFIKFSCDFHFKACAIGNREGKIFLWDLQSSPPILIAKLVHTQSKSPIRQTALSHDGSTILCCCDDGTIWRWDDANSEA*