Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361070 | XP_003603871.1 | 99.143 | 350 | 3 | 0 | 1 | 350 | 1 | 350 | 0.0 | 721 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361070 | sp|Q9LM66|XCP2_ARATH | 77.439 | 328 | 72 | 2 | 25 | 350 | 29 | 356 | 0.0 | 530 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361070 | G7J6G3 | 99.143 | 350 | 3 | 0 | 1 | 350 | 1 | 350 | 0.0 | 721 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1361070 | Msa1363010 | 0.806399 | 8.383894e-50 | -8.615850e-47 |
| Msa1361070 | Msa1369030 | 0.942234 | 1.031202e-101 | -8.615850e-47 |
| Msa1361070 | Msa1429010 | 0.937114 | 5.856787e-98 | -8.615850e-47 |
| Msa0660890 | Msa1361070 | 0.875171 | 3.800703e-68 | -8.615850e-47 |
| Msa0716710 | Msa1361070 | 0.888866 | 4.038039e-73 | -8.615850e-47 |
| Msa0757410 | Msa1361070 | 0.880066 | 7.454724e-70 | -8.615850e-47 |
| Msa0799170 | Msa1361070 | 0.805337 | 1.401335e-49 | -8.615850e-47 |
| Msa0837610 | Msa1361070 | 0.823028 | 1.726973e-53 | -8.615850e-47 |
| Msa0154760 | Msa1361070 | 0.805144 | 1.537970e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361070 | MtrunA17_Chr3g0144281 | 99.143 | 350 | 3 | 0 | 1 | 350 | 1 | 350 | 0.0 | 721 |
| Msa1361070 | MtrunA17_Chr1g0208261 | 57.100 | 331 | 135 | 5 | 26 | 349 | 67 | 397 | 4.18e-133 | 389 |
| Msa1361070 | MtrunA17_Chr3g0134231 | 52.260 | 354 | 155 | 7 | 9 | 349 | 11 | 363 | 3.25e-123 | 363 |
| Msa1361070 | MtrunA17_Chr4g0058081 | 53.161 | 348 | 151 | 7 | 7 | 349 | 5 | 345 | 1.22e-122 | 357 |
| Msa1361070 | MtrunA17_Chr3g0116551 | 51.862 | 349 | 157 | 5 | 5 | 348 | 3 | 345 | 1.43e-122 | 357 |
| Msa1361070 | MtrunA17_Chr4g0053311 | 49.128 | 344 | 164 | 4 | 11 | 348 | 4 | 342 | 3.22e-120 | 351 |
| Msa1361070 | MtrunA17_Chr4g0041061 | 51.156 | 346 | 154 | 7 | 9 | 347 | 7 | 344 | 1.53e-119 | 348 |
| Msa1361070 | MtrunA17_Chr4g0041081 | 53.526 | 312 | 134 | 5 | 43 | 347 | 37 | 344 | 2.22e-119 | 348 |
| Msa1361070 | MtrunA17_Chr4g0024411 | 54.921 | 315 | 130 | 6 | 41 | 347 | 32 | 342 | 5.66e-119 | 347 |
| Msa1361070 | MtrunA17_Chr4g0040881 | 53.145 | 318 | 138 | 5 | 37 | 347 | 31 | 344 | 9.16e-119 | 347 |
| Msa1361070 | MtrunA17_Chr4g0041481 | 55.663 | 309 | 128 | 6 | 43 | 347 | 36 | 339 | 7.14e-117 | 342 |
| Msa1361070 | MtrunA17_Chr5g0405751 | 54.984 | 311 | 128 | 6 | 45 | 347 | 37 | 343 | 8.34e-117 | 342 |
| Msa1361070 | MtrunA17_Chr4g0060251 | 53.481 | 316 | 135 | 6 | 40 | 347 | 33 | 344 | 5.68e-116 | 340 |
| Msa1361070 | MtrunA17_Chr1g0153011 | 48.179 | 357 | 154 | 6 | 4 | 348 | 6 | 343 | 8.42e-116 | 343 |
| Msa1361070 | MtrunA17_Chr4g0041521 | 55.016 | 309 | 130 | 6 | 43 | 347 | 36 | 339 | 2.33e-114 | 335 |
| Msa1361070 | MtrunA17_Chr3g0142071 | 53.074 | 309 | 140 | 3 | 45 | 348 | 48 | 356 | 2.64e-112 | 334 |
| Msa1361070 | MtrunA17_Chr2g0315491 | 53.822 | 314 | 132 | 6 | 41 | 347 | 33 | 340 | 6.30e-110 | 324 |
| Msa1361070 | MtrunA17_Chr4g0040851 | 51.438 | 313 | 143 | 4 | 36 | 346 | 53 | 358 | 2.51e-109 | 323 |
| Msa1361070 | MtrunA17_Chr2g0283901 | 48.837 | 344 | 166 | 6 | 13 | 349 | 17 | 357 | 7.81e-109 | 327 |
| Msa1361070 | MtrunA17_Chr2g0319991 | 49.521 | 313 | 150 | 5 | 42 | 346 | 30 | 342 | 1.62e-105 | 313 |
| Msa1361070 | MtrunA17_Chr4g0041471 | 51.133 | 309 | 135 | 6 | 48 | 346 | 38 | 340 | 1.94e-103 | 308 |
| Msa1361070 | MtrunA17_Chr2g0325121 | 49.175 | 303 | 149 | 3 | 47 | 348 | 39 | 337 | 8.29e-101 | 301 |
| Msa1361070 | MtrunA17_Chr7g0248391 | 47.249 | 309 | 148 | 8 | 43 | 346 | 38 | 336 | 6.98e-94 | 283 |
| Msa1361070 | MtrunA17_Chr7g0248811 | 46.753 | 308 | 152 | 7 | 43 | 346 | 35 | 334 | 1.92e-89 | 272 |
| Msa1361070 | MtrunA17_Chr2g0283741 | 40.057 | 352 | 194 | 11 | 9 | 348 | 13 | 359 | 9.60e-84 | 258 |
| Msa1361070 | MtrunA17_Chr8g0379151 | 40.833 | 360 | 193 | 12 | 1 | 348 | 22 | 373 | 1.26e-78 | 245 |
| Msa1361070 | MtrunA17_Chr0c27g0493921 | 41.042 | 307 | 166 | 9 | 47 | 347 | 51 | 348 | 1.23e-68 | 219 |
| Msa1361070 | MtrunA17_Chr2g0283671 | 50.000 | 228 | 109 | 5 | 120 | 346 | 3 | 226 | 9.89e-67 | 210 |
| Msa1361070 | MtrunA17_Chr4g0070441 | 41.275 | 298 | 160 | 9 | 47 | 338 | 51 | 339 | 8.41e-66 | 211 |
| Msa1361070 | MtrunA17_Chr1g0155781 | 39.683 | 315 | 165 | 8 | 47 | 344 | 51 | 357 | 4.57e-65 | 210 |
| Msa1361070 | MtrunA17_Chr4g0035551 | 38.413 | 315 | 168 | 9 | 47 | 344 | 48 | 353 | 3.51e-63 | 205 |
| Msa1361070 | MtrunA17_Chr2g0311381 | 39.237 | 367 | 183 | 15 | 7 | 349 | 2 | 352 | 1.76e-62 | 203 |
| Msa1361070 | MtrunA17_Chr2g0311471 | 41.667 | 312 | 163 | 10 | 48 | 345 | 37 | 343 | 4.86e-62 | 202 |
| Msa1361070 | MtrunA17_Chr1g0199131 | 36.571 | 350 | 192 | 8 | 17 | 344 | 22 | 363 | 1.01e-60 | 199 |
| Msa1361070 | MtrunA17_Chr2g0311391 | 37.209 | 344 | 163 | 13 | 48 | 347 | 37 | 371 | 1.11e-57 | 191 |
| Msa1361070 | MtrunA17_Chr2g0283751 | 39.858 | 281 | 151 | 11 | 9 | 278 | 13 | 286 | 1.89e-55 | 183 |
| Msa1361070 | MtrunA17_Chr1g0156161 | 41.494 | 241 | 131 | 8 | 110 | 345 | 26 | 261 | 2.75e-54 | 179 |
| Msa1361070 | MtrunA17_Chr4g0036731 | 37.183 | 355 | 163 | 13 | 7 | 344 | 6 | 317 | 5.23e-54 | 180 |
| Msa1361070 | MtrunA17_Chr4g0037291 | 35.655 | 359 | 167 | 13 | 7 | 344 | 47 | 362 | 9.64e-51 | 173 |
| Msa1361070 | MtrunA17_Chr4g0036281 | 35.294 | 357 | 171 | 13 | 7 | 344 | 6 | 321 | 4.67e-50 | 170 |
| Msa1361070 | MtrunA17_Chr7g0248421 | 43.204 | 206 | 96 | 5 | 98 | 302 | 15 | 200 | 1.42e-44 | 152 |
| Msa1361070 | MtrunA17_Chr7g0248371 | 56.122 | 98 | 41 | 2 | 250 | 346 | 34 | 130 | 5.19e-32 | 117 |
| Msa1361070 | MtrunA17_Chr2g0283661 | 27.778 | 306 | 157 | 8 | 43 | 347 | 29 | 271 | 1.54e-30 | 117 |
| Msa1361070 | MtrunA17_Chr2g0311091 | 42.000 | 150 | 72 | 3 | 48 | 182 | 35 | 184 | 6.23e-28 | 107 |
| Msa1361070 | MtrunA17_Chr1g0156771 | 49.505 | 101 | 47 | 3 | 132 | 229 | 55 | 154 | 4.50e-24 | 96.7 |
| Msa1361070 | MtrunA17_Chr7g0248661 | 56.757 | 74 | 31 | 1 | 274 | 346 | 2 | 75 | 2.21e-22 | 89.4 |
| Msa1361070 | MtrunA17_Chr7g0271041 | 27.839 | 273 | 162 | 12 | 94 | 339 | 66 | 330 | 1.45e-19 | 88.6 |
| Msa1361070 | MtrunA17_Chr7g0271031 | 26.571 | 350 | 218 | 16 | 19 | 339 | 35 | 374 | 4.35e-18 | 84.7 |
| Msa1361070 | MtrunA17_Chr8g0379671 | 31.008 | 129 | 80 | 4 | 173 | 300 | 23 | 143 | 5.69e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361070 | AT1G20850.1 | 77.439 | 328 | 72 | 2 | 25 | 350 | 29 | 356 | 0.0 | 530 |
| Msa1361070 | AT4G35350.1 | 69.014 | 355 | 105 | 2 | 1 | 350 | 1 | 355 | 0.0 | 529 |
| Msa1361070 | AT4G35350.2 | 66.901 | 284 | 89 | 2 | 1 | 279 | 1 | 284 | 1.85e-143 | 407 |
| Msa1361070 | AT5G43060.1 | 53.333 | 360 | 152 | 5 | 1 | 349 | 1 | 355 | 2.30e-129 | 378 |
| Msa1361070 | AT1G47128.1 | 52.101 | 357 | 158 | 5 | 1 | 348 | 1 | 353 | 3.51e-129 | 378 |
| Msa1361070 | AT5G50260.1 | 55.072 | 345 | 144 | 5 | 9 | 348 | 5 | 343 | 4.20e-129 | 374 |
| Msa1361070 | AT3G19390.1 | 54.070 | 344 | 149 | 6 | 8 | 348 | 9 | 346 | 8.73e-126 | 369 |
| Msa1361070 | AT3G48340.1 | 51.471 | 340 | 158 | 3 | 15 | 348 | 6 | 344 | 1.29e-118 | 347 |
| Msa1361070 | AT1G09850.1 | 53.074 | 309 | 144 | 1 | 41 | 348 | 26 | 334 | 6.54e-115 | 340 |
| Msa1361070 | AT4G36880.1 | 50.155 | 323 | 149 | 4 | 38 | 348 | 40 | 362 | 4.79e-112 | 331 |
| Msa1361070 | AT5G45890.1 | 48.974 | 341 | 159 | 7 | 17 | 347 | 10 | 345 | 2.47e-111 | 328 |
| Msa1361070 | AT3G19400.1 | 51.948 | 308 | 142 | 6 | 46 | 348 | 43 | 349 | 1.44e-108 | 322 |
| Msa1361070 | AT4G11310.1 | 47.175 | 354 | 174 | 6 | 5 | 348 | 3 | 353 | 7.14e-108 | 320 |
| Msa1361070 | AT4G11320.2 | 46.348 | 356 | 180 | 6 | 1 | 348 | 8 | 360 | 7.06e-107 | 318 |
| Msa1361070 | AT4G11320.1 | 46.348 | 356 | 180 | 6 | 1 | 348 | 8 | 360 | 7.06e-107 | 318 |
| Msa1361070 | AT1G06260.1 | 48.538 | 342 | 166 | 5 | 8 | 348 | 11 | 343 | 1.54e-106 | 316 |
| Msa1361070 | AT4G23520.1 | 44.729 | 351 | 190 | 4 | 1 | 348 | 1 | 350 | 6.97e-106 | 315 |
| Msa1361070 | AT3G48350.1 | 47.688 | 346 | 169 | 6 | 9 | 348 | 5 | 344 | 8.00e-106 | 315 |
| Msa1361070 | AT3G49340.1 | 48.232 | 311 | 150 | 6 | 44 | 346 | 32 | 339 | 9.95e-100 | 298 |
| Msa1361070 | AT2G27420.1 | 47.634 | 317 | 150 | 6 | 44 | 346 | 32 | 346 | 6.57e-98 | 294 |
| Msa1361070 | AT1G29090.1 | 47.771 | 314 | 153 | 6 | 43 | 347 | 43 | 354 | 5.43e-96 | 289 |
| Msa1361070 | AT2G34080.1 | 46.474 | 312 | 158 | 5 | 43 | 347 | 35 | 344 | 5.24e-95 | 286 |
| Msa1361070 | AT1G29080.1 | 42.566 | 343 | 183 | 9 | 15 | 347 | 7 | 345 | 6.26e-92 | 279 |
| Msa1361070 | AT3G43960.1 | 45.370 | 324 | 166 | 9 | 33 | 348 | 27 | 347 | 4.71e-86 | 265 |
| Msa1361070 | AT1G29110.1 | 37.647 | 340 | 190 | 6 | 17 | 347 | 7 | 333 | 1.24e-80 | 249 |
| Msa1361070 | AT3G19400.2 | 51.899 | 237 | 108 | 6 | 46 | 277 | 43 | 278 | 6.15e-77 | 238 |
| Msa1361070 | AT3G48350.2 | 45.161 | 279 | 142 | 5 | 9 | 282 | 5 | 277 | 8.12e-75 | 233 |
| Msa1361070 | AT5G60360.1 | 42.671 | 307 | 161 | 9 | 47 | 347 | 59 | 356 | 1.64e-74 | 234 |
| Msa1361070 | AT5G60360.2 | 42.345 | 307 | 161 | 10 | 47 | 347 | 59 | 355 | 6.64e-72 | 228 |
| Msa1361070 | AT5G60360.3 | 42.667 | 300 | 157 | 9 | 47 | 340 | 59 | 349 | 9.33e-72 | 228 |
| Msa1361070 | AT4G39090.1 | 39.940 | 333 | 171 | 9 | 29 | 344 | 37 | 357 | 2.84e-70 | 224 |
| Msa1361070 | AT2G21430.1 | 39.634 | 328 | 169 | 9 | 34 | 344 | 39 | 354 | 2.92e-69 | 221 |
| Msa1361070 | AT3G45310.1 | 40.717 | 307 | 167 | 9 | 47 | 347 | 59 | 356 | 2.91e-67 | 216 |
| Msa1361070 | AT3G45310.2 | 39.474 | 304 | 173 | 7 | 47 | 344 | 59 | 357 | 5.21e-65 | 210 |
| Msa1361070 | AT4G16190.1 | 39.241 | 316 | 167 | 8 | 47 | 344 | 55 | 363 | 3.63e-61 | 201 |
| Msa1361070 | AT3G54940.2 | 35.655 | 359 | 199 | 9 | 10 | 344 | 9 | 359 | 2.46e-60 | 198 |
| Msa1361070 | AT3G54940.3 | 34.201 | 269 | 162 | 4 | 10 | 264 | 9 | 276 | 9.76e-46 | 157 |
| Msa1361070 | AT4G01610.1 | 26.562 | 320 | 193 | 15 | 59 | 349 | 36 | 342 | 1.22e-16 | 80.5 |
| Msa1361070 | AT4G01610.2 | 26.250 | 320 | 194 | 15 | 59 | 349 | 36 | 342 | 1.79e-15 | 77.0 |
Find 97 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCAGGTTCGAGGTCTTTA+AGG | 0.183217 | tig0017334:+20550 | Msa1361070:CDS |
| AAGGAAATTATGAAATTTAA+TGG | 0.188919 | tig0017334:-22050 | None:intergenic |
| ACTGATGTTGTGACTATTAA+TGG | 0.222069 | tig0017334:+21582 | Msa1361070:CDS |
| CATTGCTTCAAAGGAAAATA+TGG | 0.243961 | tig0017334:-22115 | None:intergenic |
| TCAAATTCCCTGTCACAATT+TGG | 0.244699 | tig0017334:-21284 | None:intergenic |
| GCAGGTCAGGACAAGTGTTT+TGG | 0.258810 | tig0017334:-20372 | None:intergenic |
| GGAAGATTATCCTTACATTA+TGG | 0.312016 | tig0017334:+21425 | Msa1361070:CDS |
| ATCTCTGCCTGAAGCCTCTA+TGG | 0.319266 | tig0017334:-21676 | None:intergenic |
| ACTTGTTCTTGAACTCTTGA+TGG | 0.328420 | tig0017334:-20652 | None:intergenic |
| ATATGGTACATCAAAGGGTT+TGG | 0.369364 | tig0017334:+21866 | Msa1361070:CDS |
| TTATTTCTATCTTTAGCATT+TGG | 0.374681 | tig0017334:+20404 | Msa1361070:CDS |
| GCAACAATGTGTTATTGAAT+TGG | 0.378685 | tig0017334:-20328 | None:intergenic |
| CATTTGTAGGGTGTGTTTGA+TGG | 0.384261 | tig0017334:+21801 | Msa1361070:intron |
| AAGCACTTGCGAGATGAAAA+AGG | 0.391386 | tig0017334:+21452 | Msa1361070:CDS |
| GAGTACTTGCAGGTAGTTGC+TGG | 0.397924 | tig0017334:+21226 | Msa1361070:intron |
| AACATACTCCACTATAGAAC+TGG | 0.404978 | tig0017334:-21701 | None:intergenic |
| CATTGACCTTGATTCTTGAC+CGG | 0.416938 | tig0017334:-20791 | None:intergenic |
| ACATTATAGTGAAGAATTCA+TGG | 0.418831 | tig0017334:+21892 | Msa1361070:CDS |
| TTTCTCCAATCAACTGACTT+AGG | 0.421540 | tig0017334:-20752 | None:intergenic |
| TCAACTGTTGCCGCGGTTGA+AGG | 0.428053 | tig0017334:+21255 | Msa1361070:CDS |
| ATAAGCATAAGGAGCAGGTC+AGG | 0.428907 | tig0017334:-20385 | None:intergenic |
| GGAGCAAAGTGGGGTGAGAA+AGG | 0.429527 | tig0017334:+21915 | Msa1361070:CDS |
| ATTTGCCTAAGTCAGTTGAT+TGG | 0.430861 | tig0017334:+20747 | Msa1361070:CDS |
| CTTACAACAATGGTTGCAAT+GGG | 0.434061 | tig0017334:+21346 | Msa1361070:CDS |
| GGGGTGAGAAAGGGTTTATA+AGG | 0.436382 | tig0017334:+21925 | Msa1361070:CDS |
| TAACACATTGTTGCCAATCA+TGG | 0.437681 | tig0017334:+20337 | Msa1361070:exon |
| TTACAATAACATTGCTTCAA+AGG | 0.446603 | tig0017334:-22124 | None:intergenic |
| GGTGTGTCAGCCGTTGGATA+TGG | 0.454497 | tig0017334:+21849 | Msa1361070:CDS |
| AGTTCAAGAACAAGTATCTT+GGG | 0.458742 | tig0017334:+20660 | Msa1361070:CDS |
| GAACAAGTATCTTGGGCTAA+AGG | 0.462245 | tig0017334:+20667 | Msa1361070:CDS |
| GAGTTCAAGAACAAGTATCT+TGG | 0.466462 | tig0017334:+20659 | Msa1361070:CDS |
| AGAGATTTCCAGTTCTATAG+TGG | 0.466790 | tig0017334:+21693 | Msa1361070:CDS |
| GGAATAAACCAAATTGTGAC+AGG | 0.467218 | tig0017334:+21276 | Msa1361070:CDS |
| GGAAAGTCTGAAGGGATTTG+TGG | 0.476760 | tig0017334:+21963 | Msa1361070:CDS |
| TCATTGAACTCTTCGAATCA+TGG | 0.479297 | tig0017334:+20483 | Msa1361070:CDS |
| GAATTCATGGGGAGCAAAGT+GGG | 0.481502 | tig0017334:+21905 | Msa1361070:CDS |
| TCCATGGACTTCAAGTCCTC+TGG | 0.486674 | tig0017334:-20455 | None:intergenic |
| TAATGAACAAAGCTTATTGA+AGG | 0.491336 | tig0017334:+21626 | Msa1361070:CDS |
| GAAGATTGAATATAAGAGAA+GGG | 0.491695 | tig0017334:-20289 | None:intergenic |
| GAGCAAAGTGGGGTGAGAAA+GGG | 0.494121 | tig0017334:+21916 | Msa1361070:CDS |
| ATCTAAAGCACATTGATGAT+AGG | 0.494574 | tig0017334:+20576 | Msa1361070:CDS |
| GTGCTTTCCTCCATAATGTA+AGG | 0.494914 | tig0017334:-21435 | None:intergenic |
| TAGAAATAAGCATAAGGAGC+AGG | 0.496949 | tig0017334:-20390 | None:intergenic |
| ACAAGGTTGTCAGCAACTAC+TGG | 0.500291 | tig0017334:+20600 | Msa1361070:CDS |
| AGAAGATTGAATATAAGAGA+AGG | 0.502963 | tig0017334:-20290 | None:intergenic |
| GTTGTCAGCAACTACTGGCT+TGG | 0.503373 | tig0017334:+20605 | Msa1361070:CDS |
| ATTGACCTTGATTCTTGACC+GGG | 0.509041 | tig0017334:-20790 | None:intergenic |
| TCAGTTGATTGGAGAAAGAA+AGG | 0.509647 | tig0017334:+20758 | Msa1361070:CDS |
| TAAAGATAGAAATAAGCATA+AGG | 0.512917 | tig0017334:-20396 | None:intergenic |
| GTTGGATATGGTACATCAAA+GGG | 0.516544 | tig0017334:+21861 | Msa1361070:CDS |
| CTATGGCCACACTGAGTGGT+TGG | 0.516563 | tig0017334:-21659 | None:intergenic |
| CGTTGGATATGGTACATCAA+AGG | 0.524173 | tig0017334:+21860 | Msa1361070:CDS |
| ATAAGGATGAAGAGAAACAT+TGG | 0.526478 | tig0017334:+21942 | Msa1361070:CDS |
| AGAAACATTGGAAAGTCTGA+AGG | 0.526996 | tig0017334:+21954 | Msa1361070:CDS |
| CATTATAGTGAAGAATTCAT+GGG | 0.532840 | tig0017334:+21893 | Msa1361070:CDS |
| ACTTACAACAATGGTTGCAA+TGG | 0.533682 | tig0017334:+21345 | Msa1361070:CDS |
| GGACGTGATTTCTCCATCGT+GGG | 0.535021 | tig0017334:+20425 | Msa1361070:CDS |
| TACAACAATGGTTGCAATGG+GGG | 0.543003 | tig0017334:+21348 | Msa1361070:CDS |
| ACCACTCAGTGTGGCCATAG+AGG | 0.545434 | tig0017334:+21662 | Msa1361070:CDS |
| AAAGAAAGGTGCTGTAACCC+CGG | 0.549002 | tig0017334:+20772 | Msa1361070:CDS |
| TAAAGGTTGACTTGTCTCAA+AGG | 0.550091 | tig0017334:+20684 | Msa1361070:CDS |
| GATCATGGTGTGTCAGCCGT+TGG | 0.556769 | tig0017334:+21843 | Msa1361070:CDS |
| GTAACCCCGGTCAAGAATCA+AGG | 0.557737 | tig0017334:+20785 | Msa1361070:CDS |
| AAACGGTGGACTACATAAAG+AGG | 0.559559 | tig0017334:+21404 | Msa1361070:CDS |
| AGTGTGGCCATAGAGGCTTC+AGG | 0.567247 | tig0017334:+21669 | Msa1361070:CDS |
| GAGTTCAATGAGCTTATCCA+TGG | 0.571450 | tig0017334:-20471 | None:intergenic |
| ACCAGAGGACTTGAAGTCCA+TGG | 0.576800 | tig0017334:+20454 | Msa1361070:CDS |
| TGGACGTGATTTCTCCATCG+TGG | 0.576917 | tig0017334:+20424 | Msa1361070:CDS |
| TGCGGAAGTGAACTAGATCA+TGG | 0.579661 | tig0017334:+21828 | Msa1361070:CDS |
| CCATTGAAGAAAAGCTACTC+AGG | 0.581738 | tig0017334:+20534 | Msa1361070:CDS |
| AGAAAAGCTACTCAGGTTCG+AGG | 0.582875 | tig0017334:+20541 | Msa1361070:CDS |
| AAGGAGAGAGTCCTCAGAAG+AGG | 0.591057 | tig0017334:+20703 | Msa1361070:CDS |
| CAAAGAAGAAATTAAGACAA+AGG | 0.591687 | tig0017334:-22069 | None:intergenic |
| AGAATTCATGGGGAGCAAAG+TGG | 0.591803 | tig0017334:+21904 | Msa1361070:CDS |
| GGCCACACTGAGTGGTTGGT+TGG | 0.597846 | tig0017334:-21655 | None:intergenic |
| ATAAGTGAATTCCTCTTCTG+AGG | 0.598495 | tig0017334:-20714 | None:intergenic |
| GCAGTCGATTAATTCTTGCT+CGG | 0.604512 | tig0017334:-21316 | None:intergenic |
| AGTACTTGCAGGTAGTTGCT+GGG | 0.604719 | tig0017334:+21227 | Msa1361070:intron |
| GCCTCTATGGCCACACTGAG+TGG | 0.610194 | tig0017334:-21663 | None:intergenic |
| TTGGTTTATTCCTTCAACCG+CGG | 0.610274 | tig0017334:-21265 | None:intergenic |
| AGATTATCCTTACATTATGG+AGG | 0.615877 | tig0017334:+21428 | Msa1361070:CDS |
| GAAACATTGGAAAGTCTGAA+GGG | 0.619388 | tig0017334:+21955 | Msa1361070:CDS |
| GATTTGTGGACTCTACAAGA+TGG | 0.625513 | tig0017334:+21977 | Msa1361070:CDS |
| CTTTGATGTACCATATCCAA+CGG | 0.626421 | tig0017334:-21859 | None:intergenic |
| TGCGACACAACTTACAACAA+TGG | 0.635197 | tig0017334:+21336 | Msa1361070:CDS |
| GAATCATGGATGTCGAGACA+CGG | 0.654814 | tig0017334:+20497 | Msa1361070:CDS |
| CTCTGGTGAATAGCCCACGA+TGG | 0.663678 | tig0017334:-20438 | None:intergenic |
| ATTATAGTGAAGAATTCATG+GGG | 0.665269 | tig0017334:+21894 | Msa1361070:CDS |
| GCACATTGATGATAGGAACA+AGG | 0.668624 | tig0017334:+20583 | Msa1361070:CDS |
| AATTCATGGGGAGCAAAGTG+GGG | 0.670875 | tig0017334:+21906 | Msa1361070:CDS |
| TGCCAACCAACCACTCAGTG+TGG | 0.678227 | tig0017334:+21653 | Msa1361070:CDS |
| CATCGTGGGCTATTCACCAG+AGG | 0.679810 | tig0017334:+20439 | Msa1361070:CDS |
| GTCAAGAATCAAGGTCAATG+TGG | 0.700857 | tig0017334:+20794 | Msa1361070:CDS |
| GAATAAACCAAATTGTGACA+GGG | 0.702620 | tig0017334:+21277 | Msa1361070:CDS |
| TTACAACAATGGTTGCAATG+GGG | 0.703567 | tig0017334:+21347 | Msa1361070:CDS |
| TTGACCTTGATTCTTGACCG+GGG | 0.717921 | tig0017334:-20789 | None:intergenic |
| GGTGTGTTTGATGGACATTG+CGG | 0.757484 | tig0017334:+21810 | Msa1361070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATATATACTATTGGATAA+CGG | + | tig0017334:21134-21153 | Msa1361070:intron | 15.0% |
| !!! | AAATCTTATTTCTTTTTAGT+GGG | - | tig0017334:22011-22030 | None:intergenic | 15.0% |
| !!! | TAAATCTTATTTCTTTTTAG+TGG | - | tig0017334:22012-22031 | None:intergenic | 15.0% |
| !! | AAGGAAATTATGAAATTTAA+TGG | - | tig0017334:22053-22072 | None:intergenic | 15.0% |
| !! | TTATATATACTATTGGATAA+CGG | + | tig0017334:21134-21153 | Msa1361070:intron | 15.0% |
| !!! | AAATCTTATTTCTTTTTAGT+GGG | - | tig0017334:22011-22030 | None:intergenic | 15.0% |
| !!! | TAAATCTTATTTCTTTTTAG+TGG | - | tig0017334:22012-22031 | None:intergenic | 15.0% |
| !! | AAGGAAATTATGAAATTTAA+TGG | - | tig0017334:22053-22072 | None:intergenic | 15.0% |
| !! | TAAAGATAGAAATAAGCATA+AGG | - | tig0017334:20399-20418 | None:intergenic | 20.0% |
| !!! | TTATTTCTATCTTTAGCATT+TGG | + | tig0017334:20404-20423 | Msa1361070:CDS | 20.0% |
| !! | GTTCAGTTTATATATACTAT+TGG | + | tig0017334:21127-21146 | Msa1361070:intron | 20.0% |
| !! | ATAAGTAACATAACTTTCAT+TGG | + | tig0017334:21540-21559 | Msa1361070:intron | 20.0% |
| !! | ATTATTTAACTACCATTTGT+AGG | + | tig0017334:21788-21807 | Msa1361070:intron | 20.0% |
| !! | TTATTTAACTACCATTTGTA+GGG | + | tig0017334:21789-21808 | Msa1361070:intron | 20.0% |
| !! | TAAAGATAGAAATAAGCATA+AGG | - | tig0017334:20399-20418 | None:intergenic | 20.0% |
| !!! | TTATTTCTATCTTTAGCATT+TGG | + | tig0017334:20404-20423 | Msa1361070:CDS | 20.0% |
| !! | GTTCAGTTTATATATACTAT+TGG | + | tig0017334:21127-21146 | Msa1361070:intron | 20.0% |
| !! | ATAAGTAACATAACTTTCAT+TGG | + | tig0017334:21540-21559 | Msa1361070:intron | 20.0% |
| !! | ATTATTTAACTACCATTTGT+AGG | + | tig0017334:21788-21807 | Msa1361070:intron | 20.0% |
| !! | TTATTTAACTACCATTTGTA+GGG | + | tig0017334:21789-21808 | Msa1361070:intron | 20.0% |
| ! | GAAGATTGAATATAAGAGAA+GGG | - | tig0017334:20292-20311 | None:intergenic | 25.0% |
| ! | AGAAGATTGAATATAAGAGA+AGG | - | tig0017334:20293-20312 | None:intergenic | 25.0% |
| ! | ATCATTGAATTGATATCAGA+CGG | - | tig0017334:20991-21010 | None:intergenic | 25.0% |
| ! | TTCTCCTTCATTGTAAAAAA+CGG | + | tig0017334:21387-21406 | Msa1361070:CDS | 25.0% |
| !!! | AAGCTTTGTTCATTATTTTG+TGG | - | tig0017334:21621-21640 | None:intergenic | 25.0% |
| ! | TAATGAACAAAGCTTATTGA+AGG | + | tig0017334:21626-21645 | Msa1361070:CDS | 25.0% |
| ! | ACATTATAGTGAAGAATTCA+TGG | + | tig0017334:21892-21911 | Msa1361070:CDS | 25.0% |
| ! | CATTATAGTGAAGAATTCAT+GGG | + | tig0017334:21893-21912 | Msa1361070:CDS | 25.0% |
| ! | ATTATAGTGAAGAATTCATG+GGG | + | tig0017334:21894-21913 | Msa1361070:CDS | 25.0% |
| ! | CAAAGAAGAAATTAAGACAA+AGG | - | tig0017334:22072-22091 | None:intergenic | 25.0% |
| ! | TTACAATAACATTGCTTCAA+AGG | - | tig0017334:22127-22146 | None:intergenic | 25.0% |
| ! | GAAGATTGAATATAAGAGAA+GGG | - | tig0017334:20292-20311 | None:intergenic | 25.0% |
| ! | AGAAGATTGAATATAAGAGA+AGG | - | tig0017334:20293-20312 | None:intergenic | 25.0% |
| ! | ATCATTGAATTGATATCAGA+CGG | - | tig0017334:20991-21010 | None:intergenic | 25.0% |
| ! | TTCTCCTTCATTGTAAAAAA+CGG | + | tig0017334:21387-21406 | Msa1361070:CDS | 25.0% |
| !!! | AAGCTTTGTTCATTATTTTG+TGG | - | tig0017334:21621-21640 | None:intergenic | 25.0% |
| ! | TAATGAACAAAGCTTATTGA+AGG | + | tig0017334:21626-21645 | Msa1361070:CDS | 25.0% |
| ! | ACATTATAGTGAAGAATTCA+TGG | + | tig0017334:21892-21911 | Msa1361070:CDS | 25.0% |
| ! | CATTATAGTGAAGAATTCAT+GGG | + | tig0017334:21893-21912 | Msa1361070:CDS | 25.0% |
| ! | ATTATAGTGAAGAATTCATG+GGG | + | tig0017334:21894-21913 | Msa1361070:CDS | 25.0% |
| ! | CAAAGAAGAAATTAAGACAA+AGG | - | tig0017334:22072-22091 | None:intergenic | 25.0% |
| ! | TTACAATAACATTGCTTCAA+AGG | - | tig0017334:22127-22146 | None:intergenic | 25.0% |
| ! | GCAACAATGTGTTATTGAAT+TGG | - | tig0017334:20331-20350 | None:intergenic | 30.0% |
| ! | ATCTAAAGCACATTGATGAT+AGG | + | tig0017334:20576-20595 | Msa1361070:CDS | 30.0% |
| AGTTCAAGAACAAGTATCTT+GGG | + | tig0017334:20660-20679 | Msa1361070:CDS | 30.0% | |
| TAGGCATGTTTACATATAGT+AGG | - | tig0017334:21052-21071 | None:intergenic | 30.0% | |
| AGCGAAAAATTTGCATGATT+AGG | - | tig0017334:21071-21090 | None:intergenic | 30.0% | |
| GAATAAACCAAATTGTGACA+GGG | + | tig0017334:21277-21296 | Msa1361070:CDS | 30.0% | |
| GGAAGATTATCCTTACATTA+TGG | + | tig0017334:21425-21444 | Msa1361070:CDS | 30.0% | |
| AGATTATCCTTACATTATGG+AGG | + | tig0017334:21428-21447 | Msa1361070:CDS | 30.0% | |
| ACTGATGTTGTGACTATTAA+TGG | + | tig0017334:21582-21601 | Msa1361070:CDS | 30.0% | |
| TGGGTGAATCTAATCTTAAA+TGG | + | tig0017334:21751-21770 | Msa1361070:intron | 30.0% | |
| ATAAGGATGAAGAGAAACAT+TGG | + | tig0017334:21942-21961 | Msa1361070:CDS | 30.0% | |
| CATTGCTTCAAAGGAAAATA+TGG | - | tig0017334:22118-22137 | None:intergenic | 30.0% | |
| ! | GCAACAATGTGTTATTGAAT+TGG | - | tig0017334:20331-20350 | None:intergenic | 30.0% |
| ! | ATCTAAAGCACATTGATGAT+AGG | + | tig0017334:20576-20595 | Msa1361070:CDS | 30.0% |
| AGTTCAAGAACAAGTATCTT+GGG | + | tig0017334:20660-20679 | Msa1361070:CDS | 30.0% | |
| TAGGCATGTTTACATATAGT+AGG | - | tig0017334:21052-21071 | None:intergenic | 30.0% | |
| AGCGAAAAATTTGCATGATT+AGG | - | tig0017334:21071-21090 | None:intergenic | 30.0% | |
| GAATAAACCAAATTGTGACA+GGG | + | tig0017334:21277-21296 | Msa1361070:CDS | 30.0% | |
| GGAAGATTATCCTTACATTA+TGG | + | tig0017334:21425-21444 | Msa1361070:CDS | 30.0% | |
| AGATTATCCTTACATTATGG+AGG | + | tig0017334:21428-21447 | Msa1361070:CDS | 30.0% | |
| ACTGATGTTGTGACTATTAA+TGG | + | tig0017334:21582-21601 | Msa1361070:CDS | 30.0% | |
| TGGGTGAATCTAATCTTAAA+TGG | + | tig0017334:21751-21770 | Msa1361070:intron | 30.0% | |
| ATAAGGATGAAGAGAAACAT+TGG | + | tig0017334:21942-21961 | Msa1361070:CDS | 30.0% | |
| CATTGCTTCAAAGGAAAATA+TGG | - | tig0017334:22118-22137 | None:intergenic | 30.0% | |
| TAACACATTGTTGCCAATCA+TGG | + | tig0017334:20337-20356 | Msa1361070:exon | 35.0% | |
| TAGAAATAAGCATAAGGAGC+AGG | - | tig0017334:20393-20412 | None:intergenic | 35.0% | |
| TCATTGAACTCTTCGAATCA+TGG | + | tig0017334:20483-20502 | Msa1361070:CDS | 35.0% | |
| ACTTGTTCTTGAACTCTTGA+TGG | - | tig0017334:20655-20674 | None:intergenic | 35.0% | |
| GAGTTCAAGAACAAGTATCT+TGG | + | tig0017334:20659-20678 | Msa1361070:CDS | 35.0% | |
| !! | TAAAGGTTGACTTGTCTCAA+AGG | + | tig0017334:20684-20703 | Msa1361070:CDS | 35.0% |
| ATAAGTGAATTCCTCTTCTG+AGG | - | tig0017334:20717-20736 | None:intergenic | 35.0% | |
| ATTTGCCTAAGTCAGTTGAT+TGG | + | tig0017334:20747-20766 | Msa1361070:CDS | 35.0% | |
| ! | TTTCTCCAATCAACTGACTT+AGG | - | tig0017334:20755-20774 | None:intergenic | 35.0% |
| TCAGTTGATTGGAGAAAGAA+AGG | + | tig0017334:20758-20777 | Msa1361070:CDS | 35.0% | |
| GGAATAAACCAAATTGTGAC+AGG | + | tig0017334:21276-21295 | Msa1361070:CDS | 35.0% | |
| TCAAATTCCCTGTCACAATT+TGG | - | tig0017334:21287-21306 | None:intergenic | 35.0% | |
| ACTTACAACAATGGTTGCAA+TGG | + | tig0017334:21345-21364 | Msa1361070:CDS | 35.0% | |
| CTTACAACAATGGTTGCAAT+GGG | + | tig0017334:21346-21365 | Msa1361070:CDS | 35.0% | |
| TTACAACAATGGTTGCAATG+GGG | + | tig0017334:21347-21366 | Msa1361070:CDS | 35.0% | |
| TCCTTCATTGTAAAAAACGG+TGG | + | tig0017334:21390-21409 | Msa1361070:CDS | 35.0% | |
| !!! | TCCACCGTTTTTTACAATGA+AGG | - | tig0017334:21394-21413 | None:intergenic | 35.0% |
| !! | TTTCATTGGTTTGTTTCACC+AGG | + | tig0017334:21554-21573 | Msa1361070:intron | 35.0% |
| AGAGATTTCCAGTTCTATAG+TGG | + | tig0017334:21693-21712 | Msa1361070:CDS | 35.0% | |
| AACATACTCCACTATAGAAC+TGG | - | tig0017334:21704-21723 | None:intergenic | 35.0% | |
| CTTTGATGTACCATATCCAA+CGG | - | tig0017334:21862-21881 | None:intergenic | 35.0% | |
| GTTGGATATGGTACATCAAA+GGG | + | tig0017334:21861-21880 | Msa1361070:CDS | 35.0% | |
| ATATGGTACATCAAAGGGTT+TGG | + | tig0017334:21866-21885 | Msa1361070:CDS | 35.0% | |
| AGAAACATTGGAAAGTCTGA+AGG | + | tig0017334:21954-21973 | Msa1361070:CDS | 35.0% | |
| GAAACATTGGAAAGTCTGAA+GGG | + | tig0017334:21955-21974 | Msa1361070:CDS | 35.0% | |
| TAACACATTGTTGCCAATCA+TGG | + | tig0017334:20337-20356 | Msa1361070:exon | 35.0% | |
| TAGAAATAAGCATAAGGAGC+AGG | - | tig0017334:20393-20412 | None:intergenic | 35.0% | |
| TCATTGAACTCTTCGAATCA+TGG | + | tig0017334:20483-20502 | Msa1361070:CDS | 35.0% | |
| ACTTGTTCTTGAACTCTTGA+TGG | - | tig0017334:20655-20674 | None:intergenic | 35.0% | |
| GAGTTCAAGAACAAGTATCT+TGG | + | tig0017334:20659-20678 | Msa1361070:CDS | 35.0% | |
| !! | TAAAGGTTGACTTGTCTCAA+AGG | + | tig0017334:20684-20703 | Msa1361070:CDS | 35.0% |
| ATAAGTGAATTCCTCTTCTG+AGG | - | tig0017334:20717-20736 | None:intergenic | 35.0% | |
| ATTTGCCTAAGTCAGTTGAT+TGG | + | tig0017334:20747-20766 | Msa1361070:CDS | 35.0% | |
| ! | TTTCTCCAATCAACTGACTT+AGG | - | tig0017334:20755-20774 | None:intergenic | 35.0% |
| TCAGTTGATTGGAGAAAGAA+AGG | + | tig0017334:20758-20777 | Msa1361070:CDS | 35.0% | |
| GGAATAAACCAAATTGTGAC+AGG | + | tig0017334:21276-21295 | Msa1361070:CDS | 35.0% | |
| TCAAATTCCCTGTCACAATT+TGG | - | tig0017334:21287-21306 | None:intergenic | 35.0% | |
| ACTTACAACAATGGTTGCAA+TGG | + | tig0017334:21345-21364 | Msa1361070:CDS | 35.0% | |
| CTTACAACAATGGTTGCAAT+GGG | + | tig0017334:21346-21365 | Msa1361070:CDS | 35.0% | |
| TTACAACAATGGTTGCAATG+GGG | + | tig0017334:21347-21366 | Msa1361070:CDS | 35.0% | |
| TCCTTCATTGTAAAAAACGG+TGG | + | tig0017334:21390-21409 | Msa1361070:CDS | 35.0% | |
| !!! | TCCACCGTTTTTTACAATGA+AGG | - | tig0017334:21394-21413 | None:intergenic | 35.0% |
| !! | TTTCATTGGTTTGTTTCACC+AGG | + | tig0017334:21554-21573 | Msa1361070:intron | 35.0% |
| AGAGATTTCCAGTTCTATAG+TGG | + | tig0017334:21693-21712 | Msa1361070:CDS | 35.0% | |
| AACATACTCCACTATAGAAC+TGG | - | tig0017334:21704-21723 | None:intergenic | 35.0% | |
| CTTTGATGTACCATATCCAA+CGG | - | tig0017334:21862-21881 | None:intergenic | 35.0% | |
| GTTGGATATGGTACATCAAA+GGG | + | tig0017334:21861-21880 | Msa1361070:CDS | 35.0% | |
| ATATGGTACATCAAAGGGTT+TGG | + | tig0017334:21866-21885 | Msa1361070:CDS | 35.0% | |
| AGAAACATTGGAAAGTCTGA+AGG | + | tig0017334:21954-21973 | Msa1361070:CDS | 35.0% | |
| GAAACATTGGAAAGTCTGAA+GGG | + | tig0017334:21955-21974 | Msa1361070:CDS | 35.0% | |
| GAGTTCAATGAGCTTATCCA+TGG | - | tig0017334:20474-20493 | None:intergenic | 40.0% | |
| ! | CCTGAGTAGCTTTTCTTCAA+TGG | - | tig0017334:20537-20556 | None:intergenic | 40.0% |
| CCATTGAAGAAAAGCTACTC+AGG | + | tig0017334:20534-20553 | Msa1361070:CDS | 40.0% | |
| ! | GCACATTGATGATAGGAACA+AGG | + | tig0017334:20583-20602 | Msa1361070:CDS | 40.0% |
| GAACAAGTATCTTGGGCTAA+AGG | + | tig0017334:20667-20686 | Msa1361070:CDS | 40.0% | |
| ATTGACCTTGATTCTTGACC+GGG | - | tig0017334:20793-20812 | None:intergenic | 40.0% | |
| CATTGACCTTGATTCTTGAC+CGG | - | tig0017334:20794-20813 | None:intergenic | 40.0% | |
| GTCAAGAATCAAGGTCAATG+TGG | + | tig0017334:20794-20813 | Msa1361070:CDS | 40.0% | |
| AGCTTGCAAGCATATTGACA+TGG | + | tig0017334:21191-21210 | Msa1361070:intron | 40.0% | |
| TTGCAAGCATATTGACATGG+TGG | + | tig0017334:21194-21213 | Msa1361070:intron | 40.0% | |
| TTGGTTTATTCCTTCAACCG+CGG | - | tig0017334:21268-21287 | None:intergenic | 40.0% | |
| GCAGTCGATTAATTCTTGCT+CGG | - | tig0017334:21319-21338 | None:intergenic | 40.0% | |
| TGCGACACAACTTACAACAA+TGG | + | tig0017334:21336-21355 | Msa1361070:CDS | 40.0% | |
| TACAACAATGGTTGCAATGG+GGG | + | tig0017334:21348-21367 | Msa1361070:CDS | 40.0% | |
| !! | AAACGGTGGACTACATAAAG+AGG | + | tig0017334:21404-21423 | Msa1361070:CDS | 40.0% |
| GTGCTTTCCTCCATAATGTA+AGG | - | tig0017334:21438-21457 | None:intergenic | 40.0% | |
| AAGCACTTGCGAGATGAAAA+AGG | + | tig0017334:21452-21471 | Msa1361070:CDS | 40.0% | |
| TCACAACATCAGTTACTTCC+TGG | - | tig0017334:21575-21594 | None:intergenic | 40.0% | |
| CATCAAACACACCCTACAAA+TGG | - | tig0017334:21803-21822 | None:intergenic | 40.0% | |
| CATTTGTAGGGTGTGTTTGA+TGG | + | tig0017334:21801-21820 | Msa1361070:intron | 40.0% | |
| CGTTGGATATGGTACATCAA+AGG | + | tig0017334:21860-21879 | Msa1361070:CDS | 40.0% | |
| GATTTGTGGACTCTACAAGA+TGG | + | tig0017334:21977-21996 | Msa1361070:CDS | 40.0% | |
| GAGTTCAATGAGCTTATCCA+TGG | - | tig0017334:20474-20493 | None:intergenic | 40.0% | |
| ! | CCTGAGTAGCTTTTCTTCAA+TGG | - | tig0017334:20537-20556 | None:intergenic | 40.0% |
| CCATTGAAGAAAAGCTACTC+AGG | + | tig0017334:20534-20553 | Msa1361070:CDS | 40.0% | |
| ! | GCACATTGATGATAGGAACA+AGG | + | tig0017334:20583-20602 | Msa1361070:CDS | 40.0% |
| GAACAAGTATCTTGGGCTAA+AGG | + | tig0017334:20667-20686 | Msa1361070:CDS | 40.0% | |
| ATTGACCTTGATTCTTGACC+GGG | - | tig0017334:20793-20812 | None:intergenic | 40.0% | |
| CATTGACCTTGATTCTTGAC+CGG | - | tig0017334:20794-20813 | None:intergenic | 40.0% | |
| GTCAAGAATCAAGGTCAATG+TGG | + | tig0017334:20794-20813 | Msa1361070:CDS | 40.0% | |
| AGCTTGCAAGCATATTGACA+TGG | + | tig0017334:21191-21210 | Msa1361070:intron | 40.0% | |
| TTGCAAGCATATTGACATGG+TGG | + | tig0017334:21194-21213 | Msa1361070:intron | 40.0% | |
| TTGGTTTATTCCTTCAACCG+CGG | - | tig0017334:21268-21287 | None:intergenic | 40.0% | |
| GCAGTCGATTAATTCTTGCT+CGG | - | tig0017334:21319-21338 | None:intergenic | 40.0% | |
| TGCGACACAACTTACAACAA+TGG | + | tig0017334:21336-21355 | Msa1361070:CDS | 40.0% | |
| TACAACAATGGTTGCAATGG+GGG | + | tig0017334:21348-21367 | Msa1361070:CDS | 40.0% | |
| !! | AAACGGTGGACTACATAAAG+AGG | + | tig0017334:21404-21423 | Msa1361070:CDS | 40.0% |
| GTGCTTTCCTCCATAATGTA+AGG | - | tig0017334:21438-21457 | None:intergenic | 40.0% | |
| AAGCACTTGCGAGATGAAAA+AGG | + | tig0017334:21452-21471 | Msa1361070:CDS | 40.0% | |
| TCACAACATCAGTTACTTCC+TGG | - | tig0017334:21575-21594 | None:intergenic | 40.0% | |
| CATCAAACACACCCTACAAA+TGG | - | tig0017334:21803-21822 | None:intergenic | 40.0% | |
| CATTTGTAGGGTGTGTTTGA+TGG | + | tig0017334:21801-21820 | Msa1361070:intron | 40.0% | |
| CGTTGGATATGGTACATCAA+AGG | + | tig0017334:21860-21879 | Msa1361070:CDS | 40.0% | |
| GATTTGTGGACTCTACAAGA+TGG | + | tig0017334:21977-21996 | Msa1361070:CDS | 40.0% | |
| GGGGAGAAAAAAGCCATGAT+TGG | - | tig0017334:20353-20372 | None:intergenic | 45.0% | |
| ! | AGGTCAGGACAAGTGTTTTG+GGG | - | tig0017334:20373-20392 | None:intergenic | 45.0% |
| ! | CAGGTCAGGACAAGTGTTTT+GGG | - | tig0017334:20374-20393 | None:intergenic | 45.0% |
| ATAAGCATAAGGAGCAGGTC+AGG | - | tig0017334:20388-20407 | None:intergenic | 45.0% | |
| GAATCATGGATGTCGAGACA+CGG | + | tig0017334:20497-20516 | Msa1361070:CDS | 45.0% | |
| AGAAAAGCTACTCAGGTTCG+AGG | + | tig0017334:20541-20560 | Msa1361070:CDS | 45.0% | |
| ACTCAGGTTCGAGGTCTTTA+AGG | + | tig0017334:20550-20569 | Msa1361070:CDS | 45.0% | |
| ACAAGGTTGTCAGCAACTAC+TGG | + | tig0017334:20600-20619 | Msa1361070:CDS | 45.0% | |
| !! | AAAGAAAGGTGCTGTAACCC+CGG | + | tig0017334:20772-20791 | Msa1361070:CDS | 45.0% |
| TTGACCTTGATTCTTGACCG+GGG | - | tig0017334:20792-20811 | None:intergenic | 45.0% | |
| GTATGAACACGAGTACTTGC+AGG | + | tig0017334:21216-21235 | Msa1361070:intron | 45.0% | |
| AGTACTTGCAGGTAGTTGCT+GGG | + | tig0017334:21227-21246 | Msa1361070:intron | 45.0% | |
| ! | GGTGTGTTTGATGGACATTG+CGG | + | tig0017334:21810-21829 | Msa1361070:CDS | 45.0% |
| TGCGGAAGTGAACTAGATCA+TGG | + | tig0017334:21828-21847 | Msa1361070:CDS | 45.0% | |
| AGAATTCATGGGGAGCAAAG+TGG | + | tig0017334:21904-21923 | Msa1361070:CDS | 45.0% | |
| GAATTCATGGGGAGCAAAGT+GGG | + | tig0017334:21905-21924 | Msa1361070:CDS | 45.0% | |
| AATTCATGGGGAGCAAAGTG+GGG | + | tig0017334:21906-21925 | Msa1361070:CDS | 45.0% | |
| GGGGTGAGAAAGGGTTTATA+AGG | + | tig0017334:21925-21944 | Msa1361070:CDS | 45.0% | |
| GGAAAGTCTGAAGGGATTTG+TGG | + | tig0017334:21963-21982 | Msa1361070:CDS | 45.0% | |
| GGGGAGAAAAAAGCCATGAT+TGG | - | tig0017334:20353-20372 | None:intergenic | 45.0% | |
| ! | AGGTCAGGACAAGTGTTTTG+GGG | - | tig0017334:20373-20392 | None:intergenic | 45.0% |
| ! | CAGGTCAGGACAAGTGTTTT+GGG | - | tig0017334:20374-20393 | None:intergenic | 45.0% |
| ATAAGCATAAGGAGCAGGTC+AGG | - | tig0017334:20388-20407 | None:intergenic | 45.0% | |
| GAATCATGGATGTCGAGACA+CGG | + | tig0017334:20497-20516 | Msa1361070:CDS | 45.0% | |
| AGAAAAGCTACTCAGGTTCG+AGG | + | tig0017334:20541-20560 | Msa1361070:CDS | 45.0% | |
| ACTCAGGTTCGAGGTCTTTA+AGG | + | tig0017334:20550-20569 | Msa1361070:CDS | 45.0% | |
| ACAAGGTTGTCAGCAACTAC+TGG | + | tig0017334:20600-20619 | Msa1361070:CDS | 45.0% | |
| !! | AAAGAAAGGTGCTGTAACCC+CGG | + | tig0017334:20772-20791 | Msa1361070:CDS | 45.0% |
| TTGACCTTGATTCTTGACCG+GGG | - | tig0017334:20792-20811 | None:intergenic | 45.0% | |
| GTATGAACACGAGTACTTGC+AGG | + | tig0017334:21216-21235 | Msa1361070:intron | 45.0% | |
| AGTACTTGCAGGTAGTTGCT+GGG | + | tig0017334:21227-21246 | Msa1361070:intron | 45.0% | |
| ! | GGTGTGTTTGATGGACATTG+CGG | + | tig0017334:21810-21829 | Msa1361070:CDS | 45.0% |
| TGCGGAAGTGAACTAGATCA+TGG | + | tig0017334:21828-21847 | Msa1361070:CDS | 45.0% | |
| AGAATTCATGGGGAGCAAAG+TGG | + | tig0017334:21904-21923 | Msa1361070:CDS | 45.0% | |
| GAATTCATGGGGAGCAAAGT+GGG | + | tig0017334:21905-21924 | Msa1361070:CDS | 45.0% | |
| AATTCATGGGGAGCAAAGTG+GGG | + | tig0017334:21906-21925 | Msa1361070:CDS | 45.0% | |
| GGGGTGAGAAAGGGTTTATA+AGG | + | tig0017334:21925-21944 | Msa1361070:CDS | 45.0% | |
| GGAAAGTCTGAAGGGATTTG+TGG | + | tig0017334:21963-21982 | Msa1361070:CDS | 45.0% | |
| !!! | TTAATTATTGTTTTTTTTAA+TGG | + | tig0017334:21731-21750 | Msa1361070:intron | 5.0% |
| !!! | TAATTATTGTTTTTTTTAAT+GGG | + | tig0017334:21732-21751 | Msa1361070:intron | 5.0% |
| !!! | TTAATTATTGTTTTTTTTAA+TGG | + | tig0017334:21731-21750 | Msa1361070:intron | 5.0% |
| !!! | TAATTATTGTTTTTTTTAAT+GGG | + | tig0017334:21732-21751 | Msa1361070:intron | 5.0% |
| !! | GGTCAGGACAAGTGTTTTGG+GGG | - | tig0017334:20372-20391 | None:intergenic | 50.0% |
| ! | GCAGGTCAGGACAAGTGTTT+TGG | - | tig0017334:20375-20394 | None:intergenic | 50.0% |
| TGGACGTGATTTCTCCATCG+TGG | + | tig0017334:20424-20443 | Msa1361070:CDS | 50.0% | |
| GGACGTGATTTCTCCATCGT+GGG | + | tig0017334:20425-20444 | Msa1361070:CDS | 50.0% | |
| ACCAGAGGACTTGAAGTCCA+TGG | + | tig0017334:20454-20473 | Msa1361070:CDS | 50.0% | |
| TCCATGGACTTCAAGTCCTC+TGG | - | tig0017334:20458-20477 | None:intergenic | 50.0% | |
| ! | GTTGTCAGCAACTACTGGCT+TGG | + | tig0017334:20605-20624 | Msa1361070:CDS | 50.0% |
| AAGGAGAGAGTCCTCAGAAG+AGG | + | tig0017334:20703-20722 | Msa1361070:CDS | 50.0% | |
| GTAACCCCGGTCAAGAATCA+AGG | + | tig0017334:20785-20804 | Msa1361070:CDS | 50.0% | |
| !! | TGCATCGACTATGTGGATGC+GGG | - | tig0017334:20871-20890 | None:intergenic | 50.0% |
| !! | GTGCATCGACTATGTGGATG+CGG | - | tig0017334:20872-20891 | None:intergenic | 50.0% |
| CATCCACATAGTCGATGCAC+TGG | + | tig0017334:20872-20891 | Msa1361070:intron | 50.0% | |
| !! | GAACCAGTGCATCGACTATG+TGG | - | tig0017334:20878-20897 | None:intergenic | 50.0% |
| GAGTACTTGCAGGTAGTTGC+TGG | + | tig0017334:21226-21245 | Msa1361070:intron | 50.0% | |
| ! | GGCATTTTCAACTGTTGCCG+CGG | + | tig0017334:21248-21267 | Msa1361070:CDS | 50.0% |
| TGGTTGCAATGGGGGTCTAA+TGG | + | tig0017334:21356-21375 | Msa1361070:CDS | 50.0% | |
| ATCTCTGCCTGAAGCCTCTA+TGG | - | tig0017334:21679-21698 | None:intergenic | 50.0% | |
| GAGCAAAGTGGGGTGAGAAA+GGG | + | tig0017334:21916-21935 | Msa1361070:CDS | 50.0% | |
| !! | GGTCAGGACAAGTGTTTTGG+GGG | - | tig0017334:20372-20391 | None:intergenic | 50.0% |
| ! | GCAGGTCAGGACAAGTGTTT+TGG | - | tig0017334:20375-20394 | None:intergenic | 50.0% |
| TGGACGTGATTTCTCCATCG+TGG | + | tig0017334:20424-20443 | Msa1361070:CDS | 50.0% | |
| GGACGTGATTTCTCCATCGT+GGG | + | tig0017334:20425-20444 | Msa1361070:CDS | 50.0% | |
| ACCAGAGGACTTGAAGTCCA+TGG | + | tig0017334:20454-20473 | Msa1361070:CDS | 50.0% | |
| TCCATGGACTTCAAGTCCTC+TGG | - | tig0017334:20458-20477 | None:intergenic | 50.0% | |
| ! | GTTGTCAGCAACTACTGGCT+TGG | + | tig0017334:20605-20624 | Msa1361070:CDS | 50.0% |
| AAGGAGAGAGTCCTCAGAAG+AGG | + | tig0017334:20703-20722 | Msa1361070:CDS | 50.0% | |
| GTAACCCCGGTCAAGAATCA+AGG | + | tig0017334:20785-20804 | Msa1361070:CDS | 50.0% | |
| !! | TGCATCGACTATGTGGATGC+GGG | - | tig0017334:20871-20890 | None:intergenic | 50.0% |
| !! | GTGCATCGACTATGTGGATG+CGG | - | tig0017334:20872-20891 | None:intergenic | 50.0% |
| CATCCACATAGTCGATGCAC+TGG | + | tig0017334:20872-20891 | Msa1361070:intron | 50.0% | |
| !! | GAACCAGTGCATCGACTATG+TGG | - | tig0017334:20878-20897 | None:intergenic | 50.0% |
| GAGTACTTGCAGGTAGTTGC+TGG | + | tig0017334:21226-21245 | Msa1361070:intron | 50.0% | |
| ! | GGCATTTTCAACTGTTGCCG+CGG | + | tig0017334:21248-21267 | Msa1361070:CDS | 50.0% |
| TGGTTGCAATGGGGGTCTAA+TGG | + | tig0017334:21356-21375 | Msa1361070:CDS | 50.0% | |
| ATCTCTGCCTGAAGCCTCTA+TGG | - | tig0017334:21679-21698 | None:intergenic | 50.0% | |
| GAGCAAAGTGGGGTGAGAAA+GGG | + | tig0017334:21916-21935 | Msa1361070:CDS | 50.0% | |
| CTCTGGTGAATAGCCCACGA+TGG | - | tig0017334:20441-20460 | None:intergenic | 55.0% | |
| ! | CATCGTGGGCTATTCACCAG+AGG | + | tig0017334:20439-20458 | Msa1361070:CDS | 55.0% |
| !! | GCATCGACTATGTGGATGCG+GGG | - | tig0017334:20870-20889 | None:intergenic | 55.0% |
| TCAACTGTTGCCGCGGTTGA+AGG | + | tig0017334:21255-21274 | Msa1361070:CDS | 55.0% | |
| TGCCAACCAACCACTCAGTG+TGG | + | tig0017334:21653-21672 | Msa1361070:CDS | 55.0% | |
| CTATGGCCACACTGAGTGGT+TGG | - | tig0017334:21662-21681 | None:intergenic | 55.0% | |
| ACCACTCAGTGTGGCCATAG+AGG | + | tig0017334:21662-21681 | Msa1361070:CDS | 55.0% | |
| AGTGTGGCCATAGAGGCTTC+AGG | + | tig0017334:21669-21688 | Msa1361070:CDS | 55.0% | |
| GATCATGGTGTGTCAGCCGT+TGG | + | tig0017334:21843-21862 | Msa1361070:CDS | 55.0% | |
| GGTGTGTCAGCCGTTGGATA+TGG | + | tig0017334:21849-21868 | Msa1361070:CDS | 55.0% | |
| GGAGCAAAGTGGGGTGAGAA+AGG | + | tig0017334:21915-21934 | Msa1361070:CDS | 55.0% | |
| CTCTGGTGAATAGCCCACGA+TGG | - | tig0017334:20441-20460 | None:intergenic | 55.0% | |
| ! | CATCGTGGGCTATTCACCAG+AGG | + | tig0017334:20439-20458 | Msa1361070:CDS | 55.0% |
| !! | GCATCGACTATGTGGATGCG+GGG | - | tig0017334:20870-20889 | None:intergenic | 55.0% |
| TCAACTGTTGCCGCGGTTGA+AGG | + | tig0017334:21255-21274 | Msa1361070:CDS | 55.0% | |
| TGCCAACCAACCACTCAGTG+TGG | + | tig0017334:21653-21672 | Msa1361070:CDS | 55.0% | |
| CTATGGCCACACTGAGTGGT+TGG | - | tig0017334:21662-21681 | None:intergenic | 55.0% | |
| ACCACTCAGTGTGGCCATAG+AGG | + | tig0017334:21662-21681 | Msa1361070:CDS | 55.0% | |
| AGTGTGGCCATAGAGGCTTC+AGG | + | tig0017334:21669-21688 | Msa1361070:CDS | 55.0% | |
| GATCATGGTGTGTCAGCCGT+TGG | + | tig0017334:21843-21862 | Msa1361070:CDS | 55.0% | |
| GGTGTGTCAGCCGTTGGATA+TGG | + | tig0017334:21849-21868 | Msa1361070:CDS | 55.0% | |
| GGAGCAAAGTGGGGTGAGAA+AGG | + | tig0017334:21915-21934 | Msa1361070:CDS | 55.0% | |
| GGCCACACTGAGTGGTTGGT+TGG | - | tig0017334:21658-21677 | None:intergenic | 60.0% | |
| GCCTCTATGGCCACACTGAG+TGG | - | tig0017334:21666-21685 | None:intergenic | 60.0% | |
| GGCCACACTGAGTGGTTGGT+TGG | - | tig0017334:21658-21677 | None:intergenic | 60.0% | |
| GCCTCTATGGCCACACTGAG+TGG | - | tig0017334:21666-21685 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017334 | gene | 20287 | 22238 | 20287 | ID=Msa1361070;Name=Msa1361070 |
| tig0017334 | mRNA | 20287 | 22238 | 20287 | ID=Msa1361070-mRNA-1;Parent=Msa1361070;Name=Msa1361070-mRNA-1;_AED=0.08;_eAED=0.08;_QI=69|1|1|1|1|1|4|213|350 |
| tig0017334 | exon | 20287 | 20815 | 20287 | ID=Msa1361070-mRNA-1:exon:12241;Parent=Msa1361070-mRNA-1 |
| tig0017334 | exon | 21238 | 21473 | 21238 | ID=Msa1361070-mRNA-1:exon:12242;Parent=Msa1361070-mRNA-1 |
| tig0017334 | exon | 21576 | 21716 | 21576 | ID=Msa1361070-mRNA-1:exon:12243;Parent=Msa1361070-mRNA-1 |
| tig0017334 | exon | 21810 | 22238 | 21810 | ID=Msa1361070-mRNA-1:exon:12244;Parent=Msa1361070-mRNA-1 |
| tig0017334 | five_prime_UTR | 20287 | 20355 | 20287 | ID=Msa1361070-mRNA-1:five_prime_utr;Parent=Msa1361070-mRNA-1 |
| tig0017334 | CDS | 20356 | 20815 | 20356 | ID=Msa1361070-mRNA-1:cds;Parent=Msa1361070-mRNA-1 |
| tig0017334 | CDS | 21238 | 21473 | 21238 | ID=Msa1361070-mRNA-1:cds;Parent=Msa1361070-mRNA-1 |
| tig0017334 | CDS | 21576 | 21716 | 21576 | ID=Msa1361070-mRNA-1:cds;Parent=Msa1361070-mRNA-1 |
| tig0017334 | CDS | 21810 | 22025 | 21810 | ID=Msa1361070-mRNA-1:cds;Parent=Msa1361070-mRNA-1 |
| tig0017334 | three_prime_UTR | 22026 | 22238 | 22026 | ID=Msa1361070-mRNA-1:three_prime_utr;Parent=Msa1361070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
