Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0660890 | XP_003612035.1 | 98.077 | 572 | 5 | 1 | 1 | 572 | 1 | 566 | 0.0 | 1160 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0660890 | sp|Q8VZA1|LAC11_ARATH | 75.313 | 559 | 129 | 3 | 14 | 572 | 8 | 557 | 0.0 | 889 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0039640 | Msa0660890 | 0.837056 | 6.507909e-57 | -8.615850e-47 |
Msa0087280 | Msa0660890 | 0.837073 | 6.445509e-57 | -8.615850e-47 |
Msa0615920 | Msa0660890 | 0.819906 | 9.080711e-53 | -8.615850e-47 |
Msa0660890 | Msa0716710 | 0.990126 | 3.543845e-181 | -8.615850e-47 |
Msa0660890 | Msa0757410 | 0.995860 | 1.093900e-220 | -8.615850e-47 |
Msa0660890 | Msa0799170 | 0.898890 | 3.402441e-77 | -8.615850e-47 |
Msa0660890 | Msa0837610 | 0.913316 | 7.085021e-84 | -8.615850e-47 |
Msa0660890 | Msa1361070 | 0.875171 | 3.800703e-68 | -8.615850e-47 |
Msa0660890 | Msa1369030 | 0.905683 | 3.312337e-80 | -8.615850e-47 |
Msa0660890 | Msa1429010 | 0.900882 | 4.693313e-78 | -8.615850e-47 |
Msa0133920 | Msa0660890 | 0.838734 | 2.411493e-57 | -8.615850e-47 |
Msa0154760 | Msa0660890 | 0.850616 | 1.513545e-60 | -8.615850e-47 |
Msa0228680 | Msa0660890 | 0.817162 | 3.805162e-52 | -8.615850e-47 |
Msa0519940 | Msa0660890 | 0.803250 | 3.812851e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0660890 | MtrunA17_Chr5g0404341 | 98.077 | 572 | 5 | 1 | 1 | 572 | 1 | 566 | 0.0 | 1160 |
Msa0660890 | MtrunA17_Chr5g0404361 | 82.250 | 569 | 92 | 4 | 5 | 572 | 51 | 611 | 0.0 | 981 |
Msa0660890 | MtrunA17_Chr5g0429511 | 60.215 | 558 | 215 | 2 | 15 | 572 | 8 | 558 | 0.0 | 723 |
Msa0660890 | MtrunA17_Chr3g0104061 | 62.500 | 544 | 196 | 3 | 29 | 572 | 21 | 556 | 0.0 | 722 |
Msa0660890 | MtrunA17_Chr4g0005921 | 60.213 | 563 | 215 | 3 | 12 | 572 | 2 | 557 | 0.0 | 696 |
Msa0660890 | MtrunA17_Chr5g0436461 | 56.014 | 557 | 229 | 4 | 21 | 572 | 9 | 554 | 0.0 | 673 |
Msa0660890 | MtrunA17_Chr7g0238981 | 57.989 | 557 | 212 | 8 | 31 | 572 | 44 | 593 | 0.0 | 663 |
Msa0660890 | MtrunA17_Chr7g0237491 | 54.188 | 585 | 243 | 8 | 6 | 572 | 3 | 580 | 0.0 | 649 |
Msa0660890 | MtrunA17_Chr7g0237441 | 54.592 | 588 | 243 | 9 | 1 | 572 | 1 | 580 | 0.0 | 648 |
Msa0660890 | MtrunA17_Chr7g0238351 | 55.102 | 588 | 236 | 9 | 6 | 572 | 1 | 581 | 0.0 | 648 |
Msa0660890 | MtrunA17_Chr7g0238941 | 53.082 | 584 | 252 | 9 | 4 | 572 | 2 | 578 | 0.0 | 637 |
Msa0660890 | MtrunA17_Chr4g0031901 | 53.235 | 541 | 234 | 6 | 31 | 560 | 41 | 573 | 0.0 | 607 |
Msa0660890 | MtrunA17_Chr5g0437681 | 48.973 | 584 | 265 | 8 | 5 | 572 | 1 | 567 | 0.0 | 587 |
Msa0660890 | MtrunA17_Chr3g0114211 | 49.486 | 584 | 265 | 9 | 5 | 572 | 1 | 570 | 0.0 | 580 |
Msa0660890 | MtrunA17_Chr5g0431581 | 51.399 | 572 | 252 | 9 | 13 | 572 | 3 | 560 | 0.0 | 577 |
Msa0660890 | MtrunA17_Chr2g0278811 | 44.658 | 571 | 285 | 6 | 33 | 572 | 37 | 607 | 6.24e-177 | 513 |
Msa0660890 | MtrunA17_Chr4g0008521 | 44.784 | 556 | 283 | 6 | 33 | 572 | 25 | 572 | 5.25e-174 | 504 |
Msa0660890 | MtrunA17_Chr8g0346581 | 42.295 | 584 | 312 | 8 | 1 | 572 | 1 | 571 | 2.28e-170 | 495 |
Msa0660890 | MtrunA17_Chr7g0240991 | 44.014 | 568 | 292 | 11 | 22 | 572 | 13 | 571 | 1.09e-163 | 478 |
Msa0660890 | MtrunA17_Chr7g0240971 | 44.077 | 574 | 296 | 8 | 14 | 572 | 7 | 570 | 2.46e-156 | 459 |
Msa0660890 | MtrunA17_Chr3g0133861 | 46.769 | 325 | 160 | 9 | 242 | 555 | 1 | 323 | 6.89e-86 | 270 |
Msa0660890 | MtrunA17_Chr8g0382691 | 33.942 | 548 | 318 | 16 | 29 | 555 | 29 | 553 | 9.62e-83 | 269 |
Msa0660890 | MtrunA17_Chr5g0436431 | 52.155 | 232 | 104 | 2 | 302 | 530 | 1 | 228 | 8.22e-80 | 250 |
Msa0660890 | MtrunA17_Chr3g0118321 | 31.818 | 594 | 340 | 22 | 12 | 572 | 1 | 562 | 6.23e-70 | 235 |
Msa0660890 | MtrunA17_Chr3g0118331 | 30.580 | 569 | 340 | 19 | 12 | 550 | 1 | 544 | 5.49e-65 | 222 |
Msa0660890 | MtrunA17_Chr3g0133871 | 47.642 | 212 | 110 | 1 | 6 | 216 | 3 | 214 | 5.82e-63 | 206 |
Msa0660890 | MtrunA17_Chr4g0038671 | 29.268 | 574 | 339 | 18 | 15 | 572 | 10 | 532 | 1.59e-58 | 204 |
Msa0660890 | MtrunA17_Chr4g0056511 | 28.920 | 574 | 369 | 17 | 10 | 572 | 4 | 549 | 4.01e-58 | 204 |
Msa0660890 | MtrunA17_Chr3g0143671 | 29.234 | 561 | 335 | 18 | 27 | 572 | 20 | 533 | 1.42e-57 | 201 |
Msa0660890 | MtrunA17_Chr1g0157341 | 28.147 | 572 | 353 | 16 | 14 | 572 | 6 | 532 | 1.46e-54 | 193 |
Msa0660890 | MtrunA17_Chr3g0079321 | 27.624 | 543 | 356 | 16 | 5 | 537 | 1 | 516 | 6.21e-54 | 192 |
Msa0660890 | MtrunA17_Chr4g0024861 | 29.903 | 515 | 302 | 18 | 30 | 532 | 23 | 490 | 2.64e-53 | 190 |
Msa0660890 | MtrunA17_Chr2g0322441 | 31.055 | 512 | 300 | 17 | 30 | 532 | 26 | 493 | 1.72e-49 | 179 |
Msa0660890 | MtrunA17_Chr7g0234061 | 28.180 | 511 | 331 | 16 | 36 | 537 | 31 | 514 | 5.20e-49 | 179 |
Msa0660890 | MtrunA17_Chr8g0374271 | 28.983 | 521 | 300 | 19 | 29 | 532 | 26 | 493 | 1.18e-48 | 177 |
Msa0660890 | MtrunA17_Chr8g0374261 | 27.869 | 549 | 309 | 21 | 17 | 538 | 9 | 497 | 1.34e-47 | 174 |
Msa0660890 | MtrunA17_Chr5g0402831 | 28.107 | 523 | 311 | 18 | 29 | 538 | 26 | 496 | 5.93e-46 | 169 |
Msa0660890 | MtrunA17_Chr4g0043261 | 27.556 | 577 | 355 | 20 | 15 | 571 | 6 | 539 | 1.14e-44 | 166 |
Msa0660890 | MtrunA17_Chr4g0075071 | 30.427 | 539 | 302 | 20 | 13 | 532 | 10 | 494 | 1.27e-43 | 163 |
Msa0660890 | MtrunA17_Chr3g0121161 | 27.163 | 578 | 363 | 22 | 13 | 571 | 46 | 584 | 2.28e-43 | 163 |
Msa0660890 | MtrunA17_Chr3g0121151 | 27.163 | 578 | 363 | 22 | 13 | 571 | 46 | 584 | 5.18e-43 | 162 |
Msa0660890 | MtrunA17_Chr3g0121171 | 27.194 | 581 | 359 | 23 | 13 | 571 | 1156 | 1694 | 2.62e-42 | 163 |
Msa0660890 | MtrunA17_Chr3g0121171 | 27.163 | 578 | 363 | 22 | 13 | 571 | 581 | 1119 | 5.13e-42 | 162 |
Msa0660890 | MtrunA17_Chr3g0121171 | 27.568 | 555 | 345 | 21 | 36 | 571 | 28 | 544 | 9.76e-42 | 162 |
Msa0660890 | MtrunA17_Chr3g0121171 | 27.652 | 528 | 325 | 21 | 63 | 571 | 1771 | 2260 | 2.64e-36 | 145 |
Msa0660890 | MtrunA17_Chr4g0024641 | 29.630 | 459 | 261 | 20 | 88 | 532 | 3 | 413 | 1.29e-37 | 149 |
Msa0660890 | MtrunA17_Chr4g0043251 | 27.106 | 546 | 327 | 23 | 52 | 571 | 45 | 545 | 3.04e-37 | 145 |
Msa0660890 | MtrunA17_Chr3g0118351 | 32.416 | 327 | 178 | 11 | 253 | 551 | 6 | 317 | 4.36e-31 | 124 |
Msa0660890 | MtrunA17_Chr1g0197301 | 27.978 | 361 | 213 | 14 | 227 | 572 | 1 | 329 | 3.47e-27 | 112 |
Msa0660890 | MtrunA17_Chr3g0118341 | 34.483 | 174 | 106 | 6 | 12 | 181 | 4 | 173 | 3.40e-24 | 100 |
Msa0660890 | MtrunA17_Chr5g0436411 | 46.479 | 71 | 36 | 1 | 21 | 89 | 9 | 79 | 1.33e-16 | 74.7 |
Msa0660890 | MtrunA17_Chr1g0197311 | 28.251 | 223 | 112 | 8 | 44 | 231 | 34 | 243 | 2.21e-16 | 79.0 |
Msa0660890 | MtrunA17_Chr4g0075781 | 29.518 | 166 | 94 | 5 | 142 | 302 | 5 | 152 | 1.14e-13 | 69.3 |
Msa0660890 | MtrunA17_Chr3g0118931 | 38.462 | 91 | 51 | 2 | 482 | 572 | 10 | 95 | 3.50e-11 | 60.5 |
Msa0660890 | MtrunA17_Chr8g0370581 | 82.143 | 28 | 5 | 0 | 189 | 216 | 1 | 28 | 3.95e-11 | 58.5 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0660890 | AT5G03260.1 | 75.313 | 559 | 129 | 3 | 14 | 572 | 8 | 557 | 0.0 | 889 |
Msa0660890 | AT2G38080.1 | 60.708 | 565 | 211 | 4 | 10 | 572 | 3 | 558 | 0.0 | 729 |
Msa0660890 | AT5G58910.2 | 58.699 | 569 | 224 | 4 | 9 | 572 | 5 | 567 | 0.0 | 699 |
Msa0660890 | AT5G58910.3 | 58.699 | 569 | 223 | 5 | 9 | 572 | 5 | 566 | 0.0 | 695 |
Msa0660890 | AT5G58910.1 | 60.075 | 536 | 196 | 5 | 42 | 572 | 1 | 523 | 0.0 | 667 |
Msa0660890 | AT5G01190.1 | 57.904 | 563 | 221 | 7 | 15 | 572 | 7 | 558 | 0.0 | 655 |
Msa0660890 | AT5G60020.1 | 54.124 | 582 | 239 | 8 | 12 | 572 | 3 | 577 | 0.0 | 646 |
Msa0660890 | AT2G29130.1 | 54.007 | 574 | 237 | 10 | 17 | 572 | 9 | 573 | 0.0 | 635 |
Msa0660890 | AT5G60020.3 | 55.797 | 552 | 216 | 8 | 42 | 572 | 1 | 545 | 0.0 | 633 |
Msa0660890 | AT5G01190.2 | 57.016 | 563 | 212 | 8 | 15 | 572 | 7 | 544 | 0.0 | 632 |
Msa0660890 | AT5G05390.1 | 50.704 | 568 | 257 | 9 | 17 | 572 | 9 | 565 | 0.0 | 588 |
Msa0660890 | AT5G60020.2 | 52.963 | 540 | 226 | 8 | 12 | 530 | 3 | 535 | 0.0 | 578 |
Msa0660890 | AT1G18140.1 | 49.644 | 562 | 257 | 8 | 31 | 572 | 26 | 581 | 0.0 | 578 |
Msa0660890 | AT2G30210.1 | 49.228 | 583 | 268 | 8 | 5 | 572 | 1 | 570 | 0.0 | 575 |
Msa0660890 | AT2G40370.1 | 47.692 | 585 | 268 | 9 | 15 | 572 | 7 | 580 | 0.0 | 556 |
Msa0660890 | AT5G07130.1 | 48.205 | 585 | 270 | 10 | 5 | 572 | 1 | 569 | 0.0 | 548 |
Msa0660890 | AT5G09360.1 | 47.100 | 569 | 279 | 10 | 13 | 572 | 14 | 569 | 0.0 | 543 |
Msa0660890 | AT3G09220.1 | 45.714 | 560 | 285 | 7 | 5 | 555 | 1 | 550 | 3.85e-172 | 500 |
Msa0660890 | AT2G46570.1 | 44.704 | 557 | 281 | 10 | 29 | 572 | 27 | 569 | 6.78e-172 | 499 |
Msa0660890 | AT5G07130.2 | 50.101 | 493 | 219 | 9 | 97 | 572 | 2 | 484 | 5.93e-166 | 481 |
Msa0660890 | AT5G07130.3 | 50.101 | 493 | 219 | 9 | 97 | 572 | 2 | 484 | 5.93e-166 | 481 |
Msa0660890 | AT5G01040.1 | 43.772 | 578 | 297 | 9 | 9 | 572 | 3 | 566 | 4.42e-164 | 480 |
Msa0660890 | AT5G01050.1 | 43.523 | 579 | 299 | 9 | 9 | 572 | 3 | 568 | 5.98e-164 | 479 |
Msa0660890 | AT5G48100.1 | 41.993 | 562 | 296 | 12 | 14 | 562 | 9 | 553 | 1.72e-152 | 449 |
Msa0660890 | AT2G46570.2 | 44.242 | 495 | 249 | 10 | 91 | 572 | 4 | 484 | 6.46e-148 | 435 |
Msa0660890 | AT3G09220.2 | 46.507 | 458 | 230 | 6 | 107 | 555 | 2 | 453 | 1.11e-142 | 421 |
Msa0660890 | AT4G39830.1 | 32.215 | 596 | 337 | 20 | 12 | 572 | 14 | 577 | 1.18e-83 | 272 |
Msa0660890 | AT5G21105.1 | 32.874 | 581 | 338 | 19 | 1 | 551 | 1 | 559 | 1.83e-79 | 261 |
Msa0660890 | AT5G21100.1 | 31.743 | 545 | 325 | 14 | 31 | 551 | 21 | 542 | 5.82e-76 | 252 |
Msa0660890 | AT5G21105.3 | 32.321 | 560 | 327 | 19 | 1 | 530 | 1 | 538 | 1.35e-70 | 237 |
Msa0660890 | AT4G39830.2 | 32.742 | 507 | 275 | 19 | 100 | 572 | 8 | 482 | 7.64e-63 | 214 |
Msa0660890 | AT4G39830.3 | 32.742 | 507 | 275 | 19 | 100 | 572 | 6 | 480 | 7.69e-63 | 214 |
Msa0660890 | AT4G39830.4 | 32.283 | 508 | 263 | 18 | 100 | 572 | 8 | 469 | 2.30e-59 | 205 |
Msa0660890 | AT1G41830.1 | 28.055 | 581 | 354 | 18 | 5 | 572 | 2 | 531 | 5.31e-57 | 200 |
Msa0660890 | AT1G76160.1 | 28.219 | 567 | 349 | 15 | 17 | 572 | 11 | 530 | 1.11e-56 | 199 |
Msa0660890 | AT4G12420.1 | 28.008 | 532 | 348 | 15 | 16 | 537 | 6 | 512 | 1.87e-56 | 200 |
Msa0660890 | AT4G12420.2 | 28.008 | 532 | 348 | 15 | 16 | 537 | 6 | 512 | 1.87e-56 | 200 |
Msa0660890 | AT4G25240.2 | 28.328 | 586 | 366 | 20 | 5 | 572 | 1 | 550 | 6.03e-56 | 198 |
Msa0660890 | AT4G25240.1 | 28.328 | 586 | 366 | 20 | 5 | 572 | 1 | 550 | 6.03e-56 | 198 |
Msa0660890 | AT1G21850.1 | 28.571 | 539 | 315 | 17 | 17 | 538 | 11 | 496 | 2.18e-55 | 196 |
Msa0660890 | AT5G51480.1 | 27.336 | 578 | 355 | 20 | 17 | 572 | 16 | 550 | 1.41e-54 | 195 |
Msa0660890 | AT1G75790.1 | 29.508 | 549 | 327 | 16 | 31 | 564 | 24 | 527 | 2.11e-54 | 193 |
Msa0660890 | AT5G66920.1 | 28.699 | 561 | 327 | 19 | 30 | 572 | 33 | 538 | 3.73e-54 | 192 |
Msa0660890 | AT1G21860.1 | 28.364 | 550 | 328 | 17 | 1 | 538 | 1 | 496 | 6.10e-54 | 192 |
Msa0660890 | AT4G28090.1 | 27.820 | 532 | 324 | 15 | 55 | 572 | 49 | 534 | 1.31e-53 | 191 |
Msa0660890 | AT4G22010.1 | 29.361 | 579 | 337 | 20 | 10 | 572 | 8 | 530 | 2.93e-52 | 187 |
Msa0660890 | AT4G38420.1 | 28.327 | 526 | 319 | 16 | 22 | 532 | 17 | 499 | 2.26e-51 | 185 |
Msa0660890 | AT5G48450.2 | 28.684 | 509 | 313 | 17 | 36 | 532 | 31 | 501 | 5.79e-50 | 182 |
Msa0660890 | AT5G48450.1 | 28.684 | 509 | 313 | 17 | 36 | 532 | 31 | 501 | 1.79e-49 | 181 |
Msa0660890 | AT4G38420.3 | 28.150 | 508 | 307 | 16 | 22 | 514 | 17 | 481 | 4.31e-47 | 172 |
Msa0660890 | AT5G21105.2 | 34.234 | 333 | 198 | 9 | 225 | 551 | 51 | 368 | 1.24e-44 | 163 |
Msa0660890 | AT4G38420.2 | 27.708 | 480 | 290 | 15 | 22 | 486 | 17 | 454 | 2.89e-43 | 160 |
Msa0660890 | AT2G23630.1 | 29.341 | 501 | 290 | 19 | 52 | 538 | 48 | 498 | 1.10e-42 | 161 |
Msa0660890 | AT2G23630.2 | 29.341 | 501 | 290 | 19 | 52 | 538 | 53 | 503 | 1.29e-42 | 160 |
Msa0660890 | AT4G37160.1 | 26.617 | 541 | 330 | 19 | 14 | 538 | 11 | 500 | 1.88e-41 | 157 |
Msa0660890 | AT1G55560.1 | 28.283 | 495 | 299 | 21 | 52 | 532 | 44 | 496 | 5.92e-38 | 147 |
Msa0660890 | AT1G55570.1 | 26.829 | 492 | 311 | 16 | 52 | 532 | 47 | 500 | 1.77e-36 | 143 |
Msa0660890 | AT3G13400.2 | 27.202 | 511 | 316 | 20 | 36 | 532 | 29 | 497 | 1.35e-35 | 140 |
Msa0660890 | AT3G13400.1 | 27.202 | 511 | 316 | 20 | 36 | 532 | 29 | 497 | 1.35e-35 | 140 |
Msa0660890 | AT3G13390.1 | 26.190 | 504 | 327 | 16 | 38 | 532 | 32 | 499 | 3.41e-34 | 137 |
Msa0660890 | AT4G37160.2 | 26.176 | 489 | 295 | 18 | 14 | 486 | 11 | 449 | 2.77e-33 | 132 |
Find 143 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
GATTGTTATATTTATCTTTC+TGG | 0.115926 | 4_3:+72023000 | Msa0660890:three_prime_UTR |
AAACCAATTGTAACAGTAAA+TGG | 0.140664 | 4_3:+72020381 | Msa0660890:CDS |
TGGTTAAGGGCTACTGTTTA+TGG | 0.146954 | 4_3:+72020751 | Msa0660890:CDS |
AGACCCTGCTAAATATAATT+TGG | 0.195177 | 4_3:+72022304 | Msa0660890:CDS |
GTTAAACTTGCCTAGCATTT+TGG | 0.196468 | 4_3:-72022781 | None:intergenic |
CAGCTCAACCGTAGAATTAA+AGG | 0.252917 | 4_3:-72022174 | None:intergenic |
TCACATCCATTTCATCTTCA+TGG | 0.290780 | 4_3:+72022230 | Msa0660890:CDS |
ACAACACAATCCATTCTAAT+TGG | 0.290849 | 4_3:+72021621 | Msa0660890:CDS |
ATGCTCATATTCTTTGGTTA+AGG | 0.305616 | 4_3:+72020737 | Msa0660890:CDS |
GCATATAACTCACATCAAAT+TGG | 0.309196 | 4_3:-72019809 | None:intergenic |
TGTTGCTACAAGAACTTTCA+TGG | 0.327046 | 4_3:+72021701 | Msa0660890:CDS |
TTCTTTATTGCTGCTTCAAC+AGG | 0.329252 | 4_3:-72019783 | None:intergenic |
GGAAAAGGGGTTCCTGGTTT+AGG | 0.331002 | 4_3:-72020790 | None:intergenic |
GTATGTGCATCCGACATATT+TGG | 0.355480 | 4_3:-72021180 | None:intergenic |
TGTTTGGAATTCCTTTGTAT+TGG | 0.355508 | 4_3:-72021767 | None:intergenic |
GGTGGCATGCTCATATTCTT+TGG | 0.356615 | 4_3:+72020731 | Msa0660890:CDS |
AAAGGAGCCAAAGGCTTATC+AGG | 0.358204 | 4_3:-72022083 | None:intergenic |
ATTGTTATATTTATCTTTCT+GGG | 0.364752 | 4_3:+72023001 | Msa0660890:three_prime_UTR |
CTCCCATTTACTGTTACAAT+TGG | 0.366040 | 4_3:-72020384 | None:intergenic |
TGCTCATATTCTTTGGTTAA+GGG | 0.367150 | 4_3:+72020738 | Msa0660890:CDS |
TTTGTTGTTGGAACTGGAAT+TGG | 0.368677 | 4_3:+72022263 | Msa0660890:CDS |
TTTAGAGTTGCACACTGGTT+GGG | 0.368974 | 4_3:+72022684 | Msa0660890:CDS |
GTCTCATAGTTCAGATTGTA+TGG | 0.369346 | 4_3:+72022835 | Msa0660890:three_prime_UTR |
GTTATTGTTCTTACGTTTCT+CGG | 0.370163 | 4_3:-72021238 | None:intergenic |
ATGTATAGCTTCCACCAGTT+TGG | 0.371631 | 4_3:-72020672 | None:intergenic |
GGTGCGCCAGTATAGTTAAA+AGG | 0.375538 | 4_3:-72022101 | None:intergenic |
GCAACCCCATTTGGTTCCCT+TGG | 0.381589 | 4_3:-72021155 | None:intergenic |
AAGTTTGTGTCATTTGCATT+AGG | 0.383453 | 4_3:-72021819 | None:intergenic |
ATATAATTTGGTTGATCCTA+TGG | 0.386113 | 4_3:+72022316 | Msa0660890:CDS |
AGCTCATCACTTTGATATCA+AGG | 0.386540 | 4_3:+72022040 | Msa0660890:CDS |
GGAAAAGGAAAAGGGGTTCC+TGG | 0.388932 | 4_3:-72020796 | None:intergenic |
CTATGGAGAGGAACACTGTT+GGG | 0.398198 | 4_3:+72022333 | Msa0660890:CDS |
ACGGCTTTCGTTGTGGAAGA+TGG | 0.405749 | 4_3:+72022715 | Msa0660890:CDS |
TGCTTTGACTAGAACATTTG+TGG | 0.409362 | 4_3:-72021655 | None:intergenic |
TCAACCAAATTATATTTAGC+AGG | 0.412948 | 4_3:-72022308 | None:intergenic |
TCTCTAGCAGGTTGTGGAAA+AGG | 0.413807 | 4_3:-72020811 | None:intergenic |
TTATAACCATGAAGATGAAA+TGG | 0.419238 | 4_3:-72022236 | None:intergenic |
AATGAAGGGATGATAGTGTT+TGG | 0.419479 | 4_3:-72021783 | None:intergenic |
CACTGGTTGGGGATTGAAAA+CGG | 0.424322 | 4_3:+72022696 | Msa0660890:CDS |
CTTTAATTCTACGGTTGAGC+TGG | 0.424324 | 4_3:+72022175 | Msa0660890:CDS |
TATTTGGTGGCAACCCCATT+TGG | 0.424538 | 4_3:-72021164 | None:intergenic |
CCTTCTGTAGCATAAATTGT+TGG | 0.426238 | 4_3:-72020417 | None:intergenic |
TTTGCATTAGGAAGTGTTGT+AGG | 0.428912 | 4_3:-72021807 | None:intergenic |
TATTTAGCAGGGTCTTTAGC+AGG | 0.438959 | 4_3:-72022296 | None:intergenic |
TTTATTGTGTAACAGGAGAA+TGG | 0.442017 | 4_3:+72021103 | Msa0660890:intron |
TCGGATGCACATACAATCAA+TGG | 0.442094 | 4_3:+72021189 | Msa0660890:CDS |
GGAAGTGTTGTAGGAAATGA+AGG | 0.446604 | 4_3:-72021798 | None:intergenic |
ACTTTGAGAGGAACATTAGC+AGG | 0.448431 | 4_3:-72021891 | None:intergenic |
CAAGATCGCCTTTAATTCTA+CGG | 0.451231 | 4_3:+72022166 | Msa0660890:CDS |
GTAGCATAAATTGTTGGCCC+TGG | 0.454242 | 4_3:-72020411 | None:intergenic |
GCCCGTCTTAGTACCGAGAT+TGG | 0.456234 | 4_3:-72022132 | None:intergenic |
CTAAACCAATAGTGTAGAAA+AGG | 0.460863 | 4_3:-72021923 | None:intergenic |
CGGCTTTCGTTGTGGAAGAT+GGG | 0.464431 | 4_3:+72022716 | Msa0660890:CDS |
ACTCAATGTCCAATCCAAAC+TGG | 0.464665 | 4_3:+72020658 | Msa0660890:CDS |
TATCGCAATGGTTGGGCTGA+TGG | 0.465845 | 4_3:+72020622 | Msa0660890:CDS |
AACCAATTGTAACAGTAAAT+GGG | 0.467133 | 4_3:+72020382 | Msa0660890:CDS |
GTAAACCAAGGGAACCAAAT+GGG | 0.470340 | 4_3:+72021150 | Msa0660890:CDS |
TTCGTTGTGGAAGATGGGCC+AGG | 0.471809 | 4_3:+72022721 | Msa0660890:CDS |
TCAAATTCTCTAGCAGGTTG+TGG | 0.473611 | 4_3:-72020817 | None:intergenic |
TAGCTTCCACCAGTTTGGAT+TGG | 0.474223 | 4_3:-72020667 | None:intergenic |
GCAGGTTGTGGAAAAGGAAA+AGG | 0.474816 | 4_3:-72020805 | None:intergenic |
TTGACCAGGACCAATTAGAA+TGG | 0.476488 | 4_3:-72021631 | None:intergenic |
TTAGAGTTGCACACTGGTTG+GGG | 0.479004 | 4_3:+72022685 | Msa0660890:CDS |
CAAAACAAAAGTTGTCTAAG+AGG | 0.485707 | 4_3:+72019673 | Msa0660890:five_prime_UTR |
ACAAGTTCAAATTCTCTAGC+AGG | 0.487160 | 4_3:-72020823 | None:intergenic |
TTGGACCGCAATTCGATTCA+CGG | 0.487234 | 4_3:+72022370 | Msa0660890:CDS |
TCTTGTCCTACATGCATCAA+TGG | 0.490940 | 4_3:+72021954 | Msa0660890:CDS |
GAACAAGGAAAGAGTGGTCC+TGG | 0.497425 | 4_3:-72021216 | None:intergenic |
CGATTCACGGCTAATAATCC+AGG | 0.504440 | 4_3:+72022383 | Msa0660890:CDS |
AATATAACATATCAATTCAC+TGG | 0.504449 | 4_3:+72020475 | Msa0660890:CDS |
TTGGGGTCCCTACCGGTGGT+TGG | 0.507604 | 4_3:+72022351 | Msa0660890:CDS |
CAGGTTGTGGAAAAGGAAAA+GGG | 0.509861 | 4_3:-72020804 | None:intergenic |
AACACTGTTGGGGTCCCTAC+CGG | 0.517718 | 4_3:+72022344 | Msa0660890:CDS |
TTTGGAAGGTCCTTTGGTGG+TGG | 0.517886 | 4_3:-72022763 | None:intergenic |
TTTCATGGATGCACCACTCT+CGG | 0.522361 | 4_3:+72021716 | Msa0660890:CDS |
AGTAAACCAAGGGAACCAAA+TGG | 0.525185 | 4_3:+72021149 | Msa0660890:CDS |
CAGGACAAAGAGGAACTTTG+TGG | 0.526013 | 4_3:+72020710 | Msa0660890:CDS |
TTAAACAGTATCGCAATGGT+TGG | 0.526070 | 4_3:+72020614 | Msa0660890:CDS |
AGAATGGATTGTGTTGTGAA+TGG | 0.527678 | 4_3:-72021615 | None:intergenic |
TCGAATTGCGGTCCAACCAC+CGG | 0.530904 | 4_3:-72022363 | None:intergenic |
ATTTAGAGTTGCACACTGGT+TGG | 0.533023 | 4_3:+72022683 | Msa0660890:CDS |
TTCTTACGTTTCTCGGAACA+AGG | 0.533666 | 4_3:-72021231 | None:intergenic |
TAAACAGTATCGCAATGGTT+GGG | 0.534891 | 4_3:+72020615 | Msa0660890:CDS |
GCCAATCTCGGTACTAAGAC+GGG | 0.536336 | 4_3:+72022131 | Msa0660890:CDS |
AGAACATTTGTGGTTTGACC+AGG | 0.539222 | 4_3:-72021645 | None:intergenic |
CGGATGCACATACAATCAAT+GGG | 0.539224 | 4_3:+72021190 | Msa0660890:CDS |
AGAGAATTTGAACTTGTGCT+AGG | 0.539942 | 4_3:+72020829 | Msa0660890:CDS |
GCACCGTTGACCGCCAATCT+CGG | 0.543409 | 4_3:+72022119 | Msa0660890:CDS |
ACAGTAAATGGGAGGTACCC+AGG | 0.547259 | 4_3:+72020393 | Msa0660890:CDS |
CAATCCATTCTAATTGGTCC+TGG | 0.548604 | 4_3:+72021627 | Msa0660890:CDS |
GGACATTGAGTAATATAAGC+TGG | 0.548729 | 4_3:-72020646 | None:intergenic |
GTAGCAACAAAGTATCTGCT+TGG | 0.549623 | 4_3:-72021687 | None:intergenic |
GTTGTCTAAGAGGAGCATAA+TGG | 0.556107 | 4_3:+72019683 | Msa0660890:exon |
TATGCAATGGAGGTTGAGAA+AGG | 0.556866 | 4_3:+72021483 | Msa0660890:CDS |
CATACAATCAATGGGAAGCC+AGG | 0.558040 | 4_3:+72021198 | Msa0660890:CDS |
TAGCATAAATTGTTGGCCCT+GGG | 0.558784 | 4_3:-72020410 | None:intergenic |
ATCTGTTCTACCACCACCAA+AGG | 0.559203 | 4_3:+72022753 | Msa0660890:CDS |
ACATATGACTTCAATGTCAC+AGG | 0.560816 | 4_3:+72020691 | Msa0660890:CDS |
TGTATGATTATATAGGTGTA+TGG | 0.566550 | 4_3:+72022647 | Msa0660890:intron |
CGCCAATCTCGGTACTAAGA+CGG | 0.571925 | 4_3:+72022130 | Msa0660890:CDS |
TGTCATGTTGTGACCAGCAA+GGG | 0.572003 | 4_3:-72021562 | None:intergenic |
AAAGGACCTTCCAAAATGCT+AGG | 0.572454 | 4_3:+72022771 | Msa0660890:CDS |
TGAAGATACATATGCAATGG+AGG | 0.572819 | 4_3:+72021473 | Msa0660890:intron |
CCTATGGAGAGGAACACTGT+TGG | 0.575145 | 4_3:+72022332 | Msa0660890:CDS |
AGGTTTCTATCAACTTTGAG+AGG | 0.579119 | 4_3:-72021903 | None:intergenic |
CAGTAAATGGGAGGTACCCA+GGG | 0.579786 | 4_3:+72020394 | Msa0660890:CDS |
CAACCAAATTATATTTAGCA+GGG | 0.585738 | 4_3:-72022307 | None:intergenic |
TTCAATGTCACAGGACAAAG+AGG | 0.588439 | 4_3:+72020700 | Msa0660890:CDS |
GTACCGAGATTGGCGGTCAA+CGG | 0.589957 | 4_3:-72022122 | None:intergenic |
GCTCATCACTTTGATATCAA+GGG | 0.590306 | 4_3:+72022041 | Msa0660890:CDS |
ATTGAAAACGGCTTTCGTTG+TGG | 0.592669 | 4_3:+72022708 | Msa0660890:CDS |
CCAACAGTGTTCCTCTCCAT+AGG | 0.596019 | 4_3:-72022332 | None:intergenic |
CAATGTCCAATCCAAACTGG+TGG | 0.606738 | 4_3:+72020661 | Msa0660890:CDS |
TTAACAAAGATATGTGACTT+CGG | 0.608585 | 4_3:-72019725 | None:intergenic |
AGAATGGTGGCACAAAGATG+TGG | 0.608690 | 4_3:+72021119 | Msa0660890:CDS |
ATTGTTATCATGCCTAAACC+AGG | 0.611746 | 4_3:+72020778 | Msa0660890:CDS |
CCAACAATTTATGCTACAGA+AGG | 0.615473 | 4_3:+72020417 | Msa0660890:CDS |
TTCTCGGAACAAGGAAAGAG+TGG | 0.616470 | 4_3:-72021222 | None:intergenic |
TTGCGGTCCAACCACCGGTA+GGG | 0.617520 | 4_3:-72022358 | None:intergenic |
CGTCTTAGTACCGAGATTGG+CGG | 0.619297 | 4_3:-72022129 | None:intergenic |
GGGGTTGCCACCAAATATGT+CGG | 0.620199 | 4_3:+72021170 | Msa0660890:CDS |
TAAACCAAGGGAACCAAATG+GGG | 0.620759 | 4_3:+72021151 | Msa0660890:CDS |
ACAGCTATATTCCAATACAA+AGG | 0.622211 | 4_3:+72021756 | Msa0660890:CDS |
CTGTCATGTTGTGACCAGCA+AGG | 0.622828 | 4_3:-72021563 | None:intergenic |
TATGGAGAGGAACACTGTTG+GGG | 0.624128 | 4_3:+72022334 | Msa0660890:CDS |
TGGAAGAGATAGTAAACCAA+GGG | 0.624447 | 4_3:+72021139 | Msa0660890:CDS |
ACTGTTGGGGTCCCTACCGG+TGG | 0.626035 | 4_3:+72022347 | Msa0660890:CDS |
CGTGTTCCATTGATGCATGT+AGG | 0.626273 | 4_3:-72021960 | None:intergenic |
CTTTGAGAGGAACATTAGCA+GGG | 0.634352 | 4_3:-72021890 | None:intergenic |
TGTCATTTAGAGTTGCACAC+TGG | 0.638629 | 4_3:+72022679 | Msa0660890:CDS |
ATTGCGGTCCAACCACCGGT+AGG | 0.642154 | 4_3:-72022359 | None:intergenic |
GGACTTAAACAGTATCGCAA+TGG | 0.642768 | 4_3:+72020610 | Msa0660890:CDS |
GTATAGTTAAAAGGAGCCAA+AGG | 0.642857 | 4_3:-72022092 | None:intergenic |
ATTAGCCGTGAATCGAATTG+CGG | 0.656457 | 4_3:-72022375 | None:intergenic |
GTGATGAGCTTGAAGAAGCG+CGG | 0.657612 | 4_3:-72022027 | None:intergenic |
ATTTGGTTGATCCTATGGAG+AGG | 0.658256 | 4_3:+72022321 | Msa0660890:CDS |
GTGGAAGAGATAGTAAACCA+AGG | 0.661655 | 4_3:+72021138 | Msa0660890:CDS |
GAAGTGTTGTAGGAAATGAA+GGG | 0.669774 | 4_3:-72021797 | None:intergenic |
ATTGTGTAACAGGAGAATGG+TGG | 0.675069 | 4_3:+72021106 | Msa0660890:intron |
GACAAAGAGGAACTTTGTGG+TGG | 0.676053 | 4_3:+72020713 | Msa0660890:CDS |
AGGTTGTGGAAAAGGAAAAG+GGG | 0.686432 | 4_3:-72020803 | None:intergenic |
TGTGCATCCGACATATTTGG+TGG | 0.699108 | 4_3:-72021177 | None:intergenic |
CAATTGTAACAGTAAATGGG+AGG | 0.721812 | 4_3:+72020385 | Msa0660890:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAGTATAATATATATAAGTA+TGG | + | chr4_3:72019835-72019854 | Msa0660890:intron | 10.0% |
!! | AAATAATGATAAAAAAACAT+GGG | - | chr4_3:72019934-72019953 | None:intergenic | 10.0% |
!! | AAAATAATGATAAAAAAACA+TGG | - | chr4_3:72019935-72019954 | None:intergenic | 10.0% |
!!! | ATTATTTTTTATACGATTTT+GGG | + | chr4_3:72019947-72019966 | Msa0660890:intron | 10.0% |
!!! | GTTTTTGTTATATAAATTAT+AGG | + | chr4_3:72020584-72020603 | Msa0660890:intron | 10.0% |
!!! | TTTTTTATTTTTGTTTCTAA+AGG | + | chr4_3:72022551-72022570 | Msa0660890:intron | 10.0% |
!!! | CATTATTTTTTATACGATTT+TGG | + | chr4_3:72019946-72019965 | Msa0660890:intron | 15.0% |
!! | AAAAAATTGAATTTGTATCA+TGG | - | chr4_3:72020140-72020159 | None:intergenic | 15.0% |
!!! | CTTTAAAATAAATCACTTTT+AGG | - | chr4_3:72020277-72020296 | None:intergenic | 15.0% |
!!! | TTGATATGTTATATTTTACA+TGG | - | chr4_3:72020470-72020489 | None:intergenic | 15.0% |
!!! | TTTTTTACCAAACATAAATT+TGG | + | chr4_3:72020513-72020532 | Msa0660890:intron | 15.0% |
!!! | GTGATTTAAAACTTTTATTT+AGG | + | chr4_3:72021025-72021044 | Msa0660890:intron | 15.0% |
!! | TTCAAATAAACTAAATTAGA+AGG | - | chr4_3:72021051-72021070 | None:intergenic | 15.0% |
!!! | TTAATTAACTTAGTTTTGTT+TGG | - | chr4_3:72021404-72021423 | None:intergenic | 15.0% |
!!! | CAAATTACAAATTTTAATGA+GGG | - | chr4_3:72021449-72021468 | None:intergenic | 15.0% |
!!! | ACAAATTACAAATTTTAATG+AGG | - | chr4_3:72021450-72021469 | None:intergenic | 15.0% |
!! | TTAGAGATGAAAAAAAAAAT+TGG | + | chr4_3:72022454-72022473 | Msa0660890:intron | 15.0% |
!! | AAAATGAAAATCTTCTAAAT+TGG | - | chr4_3:72022483-72022502 | None:intergenic | 15.0% |
!! | ATTGTTATATTTATCTTTCT+GGG | + | chr4_3:72023001-72023020 | Msa0660890:three_prime_UTR | 15.0% |
!!! | TCTTTGTTAATAGTTCTTTT+TGG | + | chr4_3:72019738-72019757 | Msa0660890:CDS | 20.0% |
!!! | TATGTTATATTTTACATGGT+TGG | - | chr4_3:72020466-72020485 | None:intergenic | 20.0% |
!! | AATATAACATATCAATTCAC+TGG | + | chr4_3:72020475-72020494 | Msa0660890:CDS | 20.0% |
!! | TTTGGTAAAAAAGAACAAAT+TGG | - | chr4_3:72020505-72020524 | None:intergenic | 20.0% |
!! | TGTTATATAAATTATAGGCA+TGG | + | chr4_3:72020589-72020608 | Msa0660890:intron | 20.0% |
!!! | TTCAAATTTTATTGTGTAAC+AGG | + | chr4_3:72021096-72021115 | Msa0660890:intron | 20.0% |
!!! | AATTTTAATGAGGGAAATTT+AGG | - | chr4_3:72021440-72021459 | None:intergenic | 20.0% |
!! | AAATTCTTACCATATGATAT+TGG | + | chr4_3:72022605-72022624 | Msa0660890:intron | 20.0% |
!!! | TTTTGCATGTATGATTATAT+AGG | + | chr4_3:72022640-72022659 | Msa0660890:intron | 20.0% |
!! | GATTGTTATATTTATCTTTC+TGG | + | chr4_3:72023000-72023019 | Msa0660890:three_prime_UTR | 20.0% |
! | TTAACAAAGATATGTGACTT+CGG | - | chr4_3:72019728-72019747 | None:intergenic | 25.0% |
!!! | ATAGTTCTTTTTGGTTTTCT+TGG | + | chr4_3:72019747-72019766 | Msa0660890:CDS | 25.0% |
!!! | ATTATGTCACGTTTTAGTAA+AGG | - | chr4_3:72019909-72019928 | None:intergenic | 25.0% |
! | AGATGAGAATCTGAAAAAAT+AGG | - | chr4_3:72020221-72020240 | None:intergenic | 25.0% |
! | AAACCAATTGTAACAGTAAA+TGG | + | chr4_3:72020381-72020400 | Msa0660890:CDS | 25.0% |
! | AACCAATTGTAACAGTAAAT+GGG | + | chr4_3:72020382-72020401 | Msa0660890:CDS | 25.0% |
! | TATTTGCAACTAAAAAAGTG+CGG | + | chr4_3:72020880-72020899 | Msa0660890:intron | 25.0% |
! | ATAATTAGTTGAACGAGATA+AGG | - | chr4_3:72021378-72021397 | None:intergenic | 25.0% |
! | TTATCTCGTTCAACTAATTA+TGG | + | chr4_3:72021377-72021396 | Msa0660890:intron | 25.0% |
!!! | TTTTGAAGATACATATGCAA+TGG | + | chr4_3:72021470-72021489 | Msa0660890:intron | 25.0% |
! | TTATAACCATGAAGATGAAA+TGG | - | chr4_3:72022239-72022258 | None:intergenic | 25.0% |
!!! | GGTTATAACTTTTTTGTTGT+TGG | + | chr4_3:72022251-72022270 | Msa0660890:CDS | 25.0% |
! | CAACCAAATTATATTTAGCA+GGG | - | chr4_3:72022310-72022329 | None:intergenic | 25.0% |
! | TCAACCAAATTATATTTAGC+AGG | - | chr4_3:72022311-72022330 | None:intergenic | 25.0% |
! | ATATAATTTGGTTGATCCTA+TGG | + | chr4_3:72022316-72022335 | Msa0660890:CDS | 25.0% |
!! | TTTACGTCTCTAATTTTCTT+CGG | + | chr4_3:72022502-72022521 | Msa0660890:intron | 25.0% |
! | TGTATGATTATATAGGTGTA+TGG | + | chr4_3:72022647-72022666 | Msa0660890:intron | 25.0% |
! | TTAACCAAAAAGAAATTGCT+AGG | + | chr4_3:72022799-72022818 | Msa0660890:three_prime_UTR | 25.0% |
CAAAACAAAAGTTGTCTAAG+AGG | + | chr4_3:72019673-72019692 | Msa0660890:five_prime_UTR | 30.0% | |
GCATATAACTCACATCAAAT+TGG | - | chr4_3:72019812-72019831 | None:intergenic | 30.0% | |
TAACATATCAATTCACTGGT+AGG | + | chr4_3:72020479-72020498 | Msa0660890:intron | 30.0% | |
CATGTGACCAAATTTATGTT+TGG | - | chr4_3:72020523-72020542 | None:intergenic | 30.0% | |
GAGATTCTAACAAGAAAACA+TGG | + | chr4_3:72020555-72020574 | Msa0660890:intron | 30.0% | |
ATGCTCATATTCTTTGGTTA+AGG | + | chr4_3:72020737-72020756 | Msa0660890:CDS | 30.0% | |
TGCTCATATTCTTTGGTTAA+GGG | + | chr4_3:72020738-72020757 | Msa0660890:CDS | 30.0% | |
ATACAATACAACCTCAATCA+TGG | - | chr4_3:72020948-72020967 | None:intergenic | 30.0% | |
TGATTGAGGTTGTATTGTAT+CGG | + | chr4_3:72020948-72020967 | Msa0660890:intron | 30.0% | |
TTTATTGTGTAACAGGAGAA+TGG | + | chr4_3:72021103-72021122 | Msa0660890:intron | 30.0% | |
GTTATTGTTCTTACGTTTCT+CGG | - | chr4_3:72021241-72021260 | None:intergenic | 30.0% | |
AGGTCGCTTATAAAAAATGA+CGG | - | chr4_3:72021281-72021300 | None:intergenic | 30.0% | |
ACAACACAATCCATTCTAAT+TGG | + | chr4_3:72021621-72021640 | Msa0660890:CDS | 30.0% | |
ACAGCTATATTCCAATACAA+AGG | + | chr4_3:72021756-72021775 | Msa0660890:CDS | 30.0% | |
! | TGTTTGGAATTCCTTTGTAT+TGG | - | chr4_3:72021770-72021789 | None:intergenic | 30.0% |
!! | AAGTTTGTGTCATTTGCATT+AGG | - | chr4_3:72021822-72021841 | None:intergenic | 30.0% |
! | AGAAACCTTTTCTACACTAT+TGG | + | chr4_3:72021918-72021937 | Msa0660890:CDS | 30.0% |
CTAAACCAATAGTGTAGAAA+AGG | - | chr4_3:72021926-72021945 | None:intergenic | 30.0% | |
!!! | CTTTTCTACACTATTGGTTT+AGG | + | chr4_3:72021924-72021943 | Msa0660890:CDS | 30.0% |
!!! | AACTTTTTTGTTGTTGGAAC+TGG | + | chr4_3:72022257-72022276 | Msa0660890:CDS | 30.0% |
AGACCCTGCTAAATATAATT+TGG | + | chr4_3:72022304-72022323 | Msa0660890:CDS | 30.0% | |
! | TTTTAATGCAGTTGTTGACA+AGG | - | chr4_3:72022413-72022432 | None:intergenic | 30.0% |
TGTCAACAACTGCATTAAAA+AGG | + | chr4_3:72022413-72022432 | Msa0660890:intron | 30.0% | |
TCATATGGTAAGAATTTGAC+AGG | - | chr4_3:72022602-72022621 | None:intergenic | 30.0% | |
! | AGAATAACTGCAATTTTTGC+AGG | - | chr4_3:72022911-72022930 | None:intergenic | 30.0% |
! | TTCTTTATTGCTGCTTCAAC+AGG | - | chr4_3:72019786-72019805 | None:intergenic | 35.0% |
!!! | CTGTTACAATTGGTTTTGCA+TGG | - | chr4_3:72020377-72020396 | None:intergenic | 35.0% |
CTCCCATTTACTGTTACAAT+TGG | - | chr4_3:72020387-72020406 | None:intergenic | 35.0% | |
CAATTGTAACAGTAAATGGG+AGG | + | chr4_3:72020385-72020404 | Msa0660890:CDS | 35.0% | |
CCTTCTGTAGCATAAATTGT+TGG | - | chr4_3:72020420-72020439 | None:intergenic | 35.0% | |
CCAACAATTTATGCTACAGA+AGG | + | chr4_3:72020417-72020436 | Msa0660890:CDS | 35.0% | |
TTAAACAGTATCGCAATGGT+TGG | + | chr4_3:72020614-72020633 | Msa0660890:CDS | 35.0% | |
TAAACAGTATCGCAATGGTT+GGG | + | chr4_3:72020615-72020634 | Msa0660890:CDS | 35.0% | |
GGACATTGAGTAATATAAGC+TGG | - | chr4_3:72020649-72020668 | None:intergenic | 35.0% | |
ACATATGACTTCAATGTCAC+AGG | + | chr4_3:72020691-72020710 | Msa0660890:CDS | 35.0% | |
ATTGTTATCATGCCTAAACC+AGG | + | chr4_3:72020778-72020797 | Msa0660890:CDS | 35.0% | |
ACAAGTTCAAATTCTCTAGC+AGG | - | chr4_3:72020826-72020845 | None:intergenic | 35.0% | |
AGAGAATTTGAACTTGTGCT+AGG | + | chr4_3:72020829-72020848 | Msa0660890:CDS | 35.0% | |
TGGAAGAGATAGTAAACCAA+GGG | + | chr4_3:72021139-72021158 | Msa0660890:CDS | 35.0% | |
TCGCTTATAAAAAATGACGG+AGG | - | chr4_3:72021278-72021297 | None:intergenic | 35.0% | |
CAAAAGAACGCTTATAACGA+GGG | + | chr4_3:72021311-72021330 | Msa0660890:intron | 35.0% | |
TGAAGATACATATGCAATGG+AGG | + | chr4_3:72021473-72021492 | Msa0660890:intron | 35.0% | |
!! | AGAATGGATTGTGTTGTGAA+TGG | - | chr4_3:72021618-72021637 | None:intergenic | 35.0% |
TGCTTTGACTAGAACATTTG+TGG | - | chr4_3:72021658-72021677 | None:intergenic | 35.0% | |
TGTTGCTACAAGAACTTTCA+TGG | + | chr4_3:72021701-72021720 | Msa0660890:CDS | 35.0% | |
! | AATGAAGGGATGATAGTGTT+TGG | - | chr4_3:72021786-72021805 | None:intergenic | 35.0% |
!! | GAAGTGTTGTAGGAAATGAA+GGG | - | chr4_3:72021800-72021819 | None:intergenic | 35.0% |
!! | TTTGCATTAGGAAGTGTTGT+AGG | - | chr4_3:72021810-72021829 | None:intergenic | 35.0% |
AGGTTTCTATCAACTTTGAG+AGG | - | chr4_3:72021906-72021925 | None:intergenic | 35.0% | |
AGCTCATCACTTTGATATCA+AGG | + | chr4_3:72022040-72022059 | Msa0660890:CDS | 35.0% | |
GCTCATCACTTTGATATCAA+GGG | + | chr4_3:72022041-72022060 | Msa0660890:CDS | 35.0% | |
! | TGATTTTCCTGATAAGCCTT+TGG | + | chr4_3:72022076-72022095 | Msa0660890:CDS | 35.0% |
GTATAGTTAAAAGGAGCCAA+AGG | - | chr4_3:72022095-72022114 | None:intergenic | 35.0% | |
!! | TTGGCTCCTTTTAACTATAC+TGG | + | chr4_3:72022095-72022114 | Msa0660890:CDS | 35.0% |
CAAGATCGCCTTTAATTCTA+CGG | + | chr4_3:72022166-72022185 | Msa0660890:CDS | 35.0% | |
TCACATCCATTTCATCTTCA+TGG | + | chr4_3:72022230-72022249 | Msa0660890:CDS | 35.0% | |
!! | TTTGTTGTTGGAACTGGAAT+TGG | + | chr4_3:72022263-72022282 | Msa0660890:CDS | 35.0% |
GAATTTGACAGGACAATGTA+AGG | - | chr4_3:72022591-72022610 | None:intergenic | 35.0% | |
ACATGCATGCCAATATCATA+TGG | - | chr4_3:72022617-72022636 | None:intergenic | 35.0% | |
! | AGAACAGATTGATCTTTTCC+TGG | - | chr4_3:72022742-72022761 | None:intergenic | 35.0% |
! | GTTAAACTTGCCTAGCATTT+TGG | - | chr4_3:72022784-72022803 | None:intergenic | 35.0% |
! | CATGCCTAGCAATTTCTTTT+TGG | - | chr4_3:72022806-72022825 | None:intergenic | 35.0% |
CAAAAAGAAATTGCTAGGCA+TGG | + | chr4_3:72022804-72022823 | Msa0660890:three_prime_UTR | 35.0% | |
GTCTCATAGTTCAGATTGTA+TGG | + | chr4_3:72022835-72022854 | Msa0660890:three_prime_UTR | 35.0% | |
! | GTTGTCTAAGAGGAGCATAA+TGG | + | chr4_3:72019683-72019702 | Msa0660890:exon | 40.0% |
TAGCATAAATTGTTGGCCCT+GGG | - | chr4_3:72020413-72020432 | None:intergenic | 40.0% | |
GGACTTAAACAGTATCGCAA+TGG | + | chr4_3:72020610-72020629 | Msa0660890:CDS | 40.0% | |
ACTCAATGTCCAATCCAAAC+TGG | + | chr4_3:72020658-72020677 | Msa0660890:CDS | 40.0% | |
ATGTATAGCTTCCACCAGTT+TGG | - | chr4_3:72020675-72020694 | None:intergenic | 40.0% | |
TTCAATGTCACAGGACAAAG+AGG | + | chr4_3:72020700-72020719 | Msa0660890:CDS | 40.0% | |
TGGTTAAGGGCTACTGTTTA+TGG | + | chr4_3:72020751-72020770 | Msa0660890:CDS | 40.0% | |
AGGTTGTGGAAAAGGAAAAG+GGG | - | chr4_3:72020806-72020825 | None:intergenic | 40.0% | |
CAGGTTGTGGAAAAGGAAAA+GGG | - | chr4_3:72020807-72020826 | None:intergenic | 40.0% | |
TCAAATTCTCTAGCAGGTTG+TGG | - | chr4_3:72020820-72020839 | None:intergenic | 40.0% | |
TACAACCTCAATCATGGTCA+TGG | - | chr4_3:72020942-72020961 | None:intergenic | 40.0% | |
ATTGTGTAACAGGAGAATGG+TGG | + | chr4_3:72021106-72021125 | Msa0660890:intron | 40.0% | |
GTGGAAGAGATAGTAAACCA+AGG | + | chr4_3:72021138-72021157 | Msa0660890:CDS | 40.0% | |
AGTAAACCAAGGGAACCAAA+TGG | + | chr4_3:72021149-72021168 | Msa0660890:CDS | 40.0% | |
GTAAACCAAGGGAACCAAAT+GGG | + | chr4_3:72021150-72021169 | Msa0660890:CDS | 40.0% | |
TAAACCAAGGGAACCAAATG+GGG | + | chr4_3:72021151-72021170 | Msa0660890:CDS | 40.0% | |
GTATGTGCATCCGACATATT+TGG | - | chr4_3:72021183-72021202 | None:intergenic | 40.0% | |
TCGGATGCACATACAATCAA+TGG | + | chr4_3:72021189-72021208 | Msa0660890:CDS | 40.0% | |
CGGATGCACATACAATCAAT+GGG | + | chr4_3:72021190-72021209 | Msa0660890:CDS | 40.0% | |
TTCTTACGTTTCTCGGAACA+AGG | - | chr4_3:72021234-72021253 | None:intergenic | 40.0% | |
! | CGTTCTTTTGCACTCACAAA+AGG | - | chr4_3:72021301-72021320 | None:intergenic | 40.0% |
GCAAAAGAACGCTTATAACG+AGG | + | chr4_3:72021310-72021329 | Msa0660890:intron | 40.0% | |
TATGCAATGGAGGTTGAGAA+AGG | + | chr4_3:72021483-72021502 | Msa0660890:CDS | 40.0% | |
! | GAACTTTTCTTTTCCCTTGC+TGG | + | chr4_3:72021549-72021568 | Msa0660890:CDS | 40.0% |
CAATCCATTCTAATTGGTCC+TGG | + | chr4_3:72021627-72021646 | Msa0660890:CDS | 40.0% | |
TTGACCAGGACCAATTAGAA+TGG | - | chr4_3:72021634-72021653 | None:intergenic | 40.0% | |
AGAACATTTGTGGTTTGACC+AGG | - | chr4_3:72021648-72021667 | None:intergenic | 40.0% | |
! | GTAGCAACAAAGTATCTGCT+TGG | - | chr4_3:72021690-72021709 | None:intergenic | 40.0% |
!! | GTTTTGTTATCAACCGAGAG+TGG | - | chr4_3:72021732-72021751 | None:intergenic | 40.0% |
!! | GGAAGTGTTGTAGGAAATGA+AGG | - | chr4_3:72021801-72021820 | None:intergenic | 40.0% |
! | CTTTGAGAGGAACATTAGCA+GGG | - | chr4_3:72021893-72021912 | None:intergenic | 40.0% |
! | ACTTTGAGAGGAACATTAGC+AGG | - | chr4_3:72021894-72021913 | None:intergenic | 40.0% |
TCTTGTCCTACATGCATCAA+TGG | + | chr4_3:72021954-72021973 | Msa0660890:CDS | 40.0% | |
CAGCTCAACCGTAGAATTAA+AGG | - | chr4_3:72022177-72022196 | None:intergenic | 40.0% | |
CTTTAATTCTACGGTTGAGC+TGG | + | chr4_3:72022175-72022194 | Msa0660890:CDS | 40.0% | |
TATTTAGCAGGGTCTTTAGC+AGG | - | chr4_3:72022299-72022318 | None:intergenic | 40.0% | |
ATTTGGTTGATCCTATGGAG+AGG | + | chr4_3:72022321-72022340 | Msa0660890:CDS | 40.0% | |
ATTAGCCGTGAATCGAATTG+CGG | - | chr4_3:72022378-72022397 | None:intergenic | 40.0% | |
AGTTGTTGACAAGGTATACC+TGG | - | chr4_3:72022404-72022423 | None:intergenic | 40.0% | |
! | TGTCATTTAGAGTTGCACAC+TGG | + | chr4_3:72022679-72022698 | Msa0660890:CDS | 40.0% |
! | ATTTAGAGTTGCACACTGGT+TGG | + | chr4_3:72022683-72022702 | Msa0660890:CDS | 40.0% |
! | TTTAGAGTTGCACACTGGTT+GGG | + | chr4_3:72022684-72022703 | Msa0660890:CDS | 40.0% |
ATTGAAAACGGCTTTCGTTG+TGG | + | chr4_3:72022708-72022727 | Msa0660890:CDS | 40.0% | |
!! | TAGCATTTTGGAAGGTCCTT+TGG | - | chr4_3:72022772-72022791 | None:intergenic | 40.0% |
AAAGGACCTTCCAAAATGCT+AGG | + | chr4_3:72022771-72022790 | Msa0660890:CDS | 40.0% | |
! | AACTTGCCTAGCATTTTGGA+AGG | - | chr4_3:72022780-72022799 | None:intergenic | 40.0% |
GTAGCATAAATTGTTGGCCC+TGG | - | chr4_3:72020414-72020433 | None:intergenic | 45.0% | |
CAATGTCCAATCCAAACTGG+TGG | + | chr4_3:72020661-72020680 | Msa0660890:CDS | 45.0% | |
TAGCTTCCACCAGTTTGGAT+TGG | - | chr4_3:72020670-72020689 | None:intergenic | 45.0% | |
CAGGACAAAGAGGAACTTTG+TGG | + | chr4_3:72020710-72020729 | Msa0660890:CDS | 45.0% | |
GACAAAGAGGAACTTTGTGG+TGG | + | chr4_3:72020713-72020732 | Msa0660890:CDS | 45.0% | |
GGTGGCATGCTCATATTCTT+TGG | + | chr4_3:72020731-72020750 | Msa0660890:CDS | 45.0% | |
GCAGGTTGTGGAAAAGGAAA+AGG | - | chr4_3:72020808-72020827 | None:intergenic | 45.0% | |
TCTCTAGCAGGTTGTGGAAA+AGG | - | chr4_3:72020814-72020833 | None:intergenic | 45.0% | |
GATCTCCATGACCATGATTG+AGG | + | chr4_3:72020934-72020953 | Msa0660890:intron | 45.0% | |
AGAATGGTGGCACAAAGATG+TGG | + | chr4_3:72021119-72021138 | Msa0660890:CDS | 45.0% | |
! | TATTTGGTGGCAACCCCATT+TGG | - | chr4_3:72021167-72021186 | None:intergenic | 45.0% |
TGTGCATCCGACATATTTGG+TGG | - | chr4_3:72021180-72021199 | None:intergenic | 45.0% | |
CATACAATCAATGGGAAGCC+AGG | + | chr4_3:72021198-72021217 | Msa0660890:CDS | 45.0% | |
TTCTCGGAACAAGGAAAGAG+TGG | - | chr4_3:72021225-72021244 | None:intergenic | 45.0% | |
GACGGAGGTAGTACAAACTT+GGG | - | chr4_3:72021263-72021282 | None:intergenic | 45.0% | |
TGACGGAGGTAGTACAAACT+TGG | - | chr4_3:72021264-72021283 | None:intergenic | 45.0% | |
TGTCATGTTGTGACCAGCAA+GGG | - | chr4_3:72021565-72021584 | None:intergenic | 45.0% | |
TTTCATGGATGCACCACTCT+CGG | + | chr4_3:72021716-72021735 | Msa0660890:CDS | 45.0% | |
CGTGTTCCATTGATGCATGT+AGG | - | chr4_3:72021963-72021982 | None:intergenic | 45.0% | |
AAAGGAGCCAAAGGCTTATC+AGG | - | chr4_3:72022086-72022105 | None:intergenic | 45.0% | |
GGTGCGCCAGTATAGTTAAA+AGG | - | chr4_3:72022104-72022123 | None:intergenic | 45.0% | |
CTATGGAGAGGAACACTGTT+GGG | + | chr4_3:72022333-72022352 | Msa0660890:CDS | 45.0% | |
TATGGAGAGGAACACTGTTG+GGG | + | chr4_3:72022334-72022353 | Msa0660890:CDS | 45.0% | |
TTGGACCGCAATTCGATTCA+CGG | + | chr4_3:72022370-72022389 | Msa0660890:CDS | 45.0% | |
CGATTCACGGCTAATAATCC+AGG | + | chr4_3:72022383-72022402 | Msa0660890:CDS | 45.0% | |
! | TTAGAGTTGCACACTGGTTG+GGG | + | chr4_3:72022685-72022704 | Msa0660890:CDS | 45.0% |
! | CACTGGTTGGGGATTGAAAA+CGG | + | chr4_3:72022696-72022715 | Msa0660890:CDS | 45.0% |
ATCTGTTCTACCACCACCAA+AGG | + | chr4_3:72022753-72022772 | Msa0660890:CDS | 45.0% | |
!! | CATTTTGGAAGGTCCTTTGG+TGG | - | chr4_3:72022769-72022788 | None:intergenic | 45.0% |
!! | ACAGTAAATGGGAGGTACCC+AGG | + | chr4_3:72020393-72020412 | Msa0660890:CDS | 50.0% |
!! | CAGTAAATGGGAGGTACCCA+GGG | + | chr4_3:72020394-72020413 | Msa0660890:CDS | 50.0% |
TATCGCAATGGTTGGGCTGA+TGG | + | chr4_3:72020622-72020641 | Msa0660890:CDS | 50.0% | |
GGAAAAGGGGTTCCTGGTTT+AGG | - | chr4_3:72020793-72020812 | None:intergenic | 50.0% | |
GGAAAAGGAAAAGGGGTTCC+TGG | - | chr4_3:72020799-72020818 | None:intergenic | 50.0% | |
GGGGTTGCCACCAAATATGT+CGG | + | chr4_3:72021170-72021189 | Msa0660890:CDS | 50.0% | |
GAACAAGGAAAGAGTGGTCC+TGG | - | chr4_3:72021219-72021238 | None:intergenic | 50.0% | |
CTGTCATGTTGTGACCAGCA+AGG | - | chr4_3:72021566-72021585 | None:intergenic | 50.0% | |
!! | GCTTGAAGAAGCGCGGTTTT+CGG | - | chr4_3:72022023-72022042 | None:intergenic | 50.0% |
GTGATGAGCTTGAAGAAGCG+CGG | - | chr4_3:72022030-72022049 | None:intergenic | 50.0% | |
! | CGTCTTAGTACCGAGATTGG+CGG | - | chr4_3:72022132-72022151 | None:intergenic | 50.0% |
CGCCAATCTCGGTACTAAGA+CGG | + | chr4_3:72022130-72022149 | Msa0660890:CDS | 50.0% | |
GCCAATCTCGGTACTAAGAC+GGG | + | chr4_3:72022131-72022150 | Msa0660890:CDS | 50.0% | |
CCAACAGTGTTCCTCTCCAT+AGG | - | chr4_3:72022335-72022354 | None:intergenic | 50.0% | |
CCTATGGAGAGGAACACTGT+TGG | + | chr4_3:72022332-72022351 | Msa0660890:CDS | 50.0% | |
ACGGCTTTCGTTGTGGAAGA+TGG | + | chr4_3:72022715-72022734 | Msa0660890:CDS | 50.0% | |
CGGCTTTCGTTGTGGAAGAT+GGG | + | chr4_3:72022716-72022735 | Msa0660890:CDS | 50.0% | |
TTTGGAAGGTCCTTTGGTGG+TGG | - | chr4_3:72022766-72022785 | None:intergenic | 50.0% | |
! | GCAACCCCATTTGGTTCCCT+TGG | - | chr4_3:72021158-72021177 | None:intergenic | 55.0% |
GTACCGAGATTGGCGGTCAA+CGG | - | chr4_3:72022125-72022144 | None:intergenic | 55.0% | |
! | GCCCGTCTTAGTACCGAGAT+TGG | - | chr4_3:72022135-72022154 | None:intergenic | 55.0% |
AACACTGTTGGGGTCCCTAC+CGG | + | chr4_3:72022344-72022363 | Msa0660890:CDS | 55.0% | |
TCGAATTGCGGTCCAACCAC+CGG | - | chr4_3:72022366-72022385 | None:intergenic | 55.0% | |
TTCGTTGTGGAAGATGGGCC+AGG | + | chr4_3:72022721-72022740 | Msa0660890:CDS | 55.0% | |
GCACCGTTGACCGCCAATCT+CGG | + | chr4_3:72022119-72022138 | Msa0660890:CDS | 60.0% | |
TTGCGGTCCAACCACCGGTA+GGG | - | chr4_3:72022361-72022380 | None:intergenic | 60.0% | |
ATTGCGGTCCAACCACCGGT+AGG | - | chr4_3:72022362-72022381 | None:intergenic | 60.0% | |
ACTGTTGGGGTCCCTACCGG+TGG | + | chr4_3:72022347-72022366 | Msa0660890:CDS | 65.0% | |
TTGGGGTCCCTACCGGTGGT+TGG | + | chr4_3:72022351-72022370 | Msa0660890:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr4_3 | gene | 72019641 | 72023047 | 72019641 | ID=Msa0660890;Name=Msa0660890 |
chr4_3 | mRNA | 72019641 | 72023047 | 72019641 | ID=Msa0660890-mRNA-1;Parent=Msa0660890;Name=Msa0660890-mRNA-1;_AED=0.06;_eAED=0.06;_QI=61|0.8|0.83|1|1|1|6|255|572 |
chr4_3 | exon | 72019641 | 72019818 | 72019641 | ID=Msa0660890-mRNA-1:exon:21568;Parent=Msa0660890-mRNA-1 |
chr4_3 | exon | 72020345 | 72020496 | 72020345 | ID=Msa0660890-mRNA-1:exon:21569;Parent=Msa0660890-mRNA-1 |
chr4_3 | exon | 72020606 | 72020850 | 72020606 | ID=Msa0660890-mRNA-1:exon:21570;Parent=Msa0660890-mRNA-1 |
chr4_3 | exon | 72021118 | 72021264 | 72021118 | ID=Msa0660890-mRNA-1:exon:21571;Parent=Msa0660890-mRNA-1 |
chr4_3 | exon | 72021478 | 72022404 | 72021478 | ID=Msa0660890-mRNA-1:exon:21572;Parent=Msa0660890-mRNA-1 |
chr4_3 | exon | 72022662 | 72023047 | 72022662 | ID=Msa0660890-mRNA-1:exon:21573;Parent=Msa0660890-mRNA-1 |
chr4_3 | five_prime_UTR | 72019641 | 72019701 | 72019641 | ID=Msa0660890-mRNA-1:five_prime_utr;Parent=Msa0660890-mRNA-1 |
chr4_3 | CDS | 72019702 | 72019818 | 72019702 | ID=Msa0660890-mRNA-1:cds;Parent=Msa0660890-mRNA-1 |
chr4_3 | CDS | 72020345 | 72020496 | 72020345 | ID=Msa0660890-mRNA-1:cds;Parent=Msa0660890-mRNA-1 |
chr4_3 | CDS | 72020606 | 72020850 | 72020606 | ID=Msa0660890-mRNA-1:cds;Parent=Msa0660890-mRNA-1 |
chr4_3 | CDS | 72021118 | 72021264 | 72021118 | ID=Msa0660890-mRNA-1:cds;Parent=Msa0660890-mRNA-1 |
chr4_3 | CDS | 72021478 | 72022404 | 72021478 | ID=Msa0660890-mRNA-1:cds;Parent=Msa0660890-mRNA-1 |
chr4_3 | CDS | 72022662 | 72022792 | 72022662 | ID=Msa0660890-mRNA-1:cds;Parent=Msa0660890-mRNA-1 |
chr4_3 | three_prime_UTR | 72022793 | 72023047 | 72022793 | ID=Msa0660890-mRNA-1:three_prime_utr;Parent=Msa0660890-mRNA-1 |
Gene Sequence |
Protein sequence |