Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429010 | XP_003603871.1 | 98.857 | 350 | 4 | 0 | 1 | 350 | 1 | 350 | 0.0 | 719 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429010 | sp|Q9LM66|XCP2_ARATH | 77.744 | 328 | 71 | 2 | 25 | 350 | 29 | 356 | 0.0 | 531 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429010 | G7J6G3 | 98.857 | 350 | 4 | 0 | 1 | 350 | 1 | 350 | 0.0 | 719 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0039640 | Msa1429010 | 0.863286 | 2.774539e-64 | -8.615850e-47 |
| Msa0087280 | Msa1429010 | 0.869941 | 2.122596e-66 | -8.615850e-47 |
| Msa1361070 | Msa1429010 | 0.937114 | 5.856787e-98 | -8.615850e-47 |
| Msa1369030 | Msa1429010 | 0.993617 | 5.401868e-201 | -8.615850e-47 |
| Msa1369410 | Msa1429010 | 0.849849 | 2.483224e-60 | -8.615850e-47 |
| Msa0660890 | Msa1429010 | 0.900882 | 4.693313e-78 | -8.615850e-47 |
| Msa0716710 | Msa1429010 | 0.905827 | 2.844665e-80 | -8.615850e-47 |
| Msa0757410 | Msa1429010 | 0.906286 | 1.744488e-80 | -8.615850e-47 |
| Msa0799170 | Msa1429010 | 0.877422 | 6.366501e-69 | -8.615850e-47 |
| Msa0837610 | Msa1429010 | 0.881743 | 1.862353e-70 | -8.615850e-47 |
| Msa0133920 | Msa1429010 | 0.874907 | 4.678192e-68 | -8.615850e-47 |
| Msa0154760 | Msa1429010 | 0.890377 | 1.041164e-73 | -8.615850e-47 |
| Msa0228680 | Msa1429010 | 0.810821 | 9.527105e-51 | -8.615850e-47 |
| Msa1227760 | Msa1429010 | 0.837218 | 5.918644e-57 | -8.615850e-47 |
| Msa1257740 | Msa1429010 | 0.803945 | 2.735380e-49 | -8.615850e-47 |
| Msa1270840 | Msa1429010 | 0.832248 | 1.053511e-55 | -8.615850e-47 |
| Msa1154150 | Msa1429010 | 0.806302 | 8.787911e-50 | -8.615850e-47 |
| Msa1191550 | Msa1429010 | 0.846656 | 1.893748e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429010 | MtrunA17_Chr3g0144281 | 98.857 | 350 | 4 | 0 | 1 | 350 | 1 | 350 | 0.0 | 719 |
| Msa1429010 | MtrunA17_Chr1g0208261 | 57.100 | 331 | 135 | 5 | 26 | 349 | 67 | 397 | 4.71e-133 | 389 |
| Msa1429010 | MtrunA17_Chr3g0134231 | 52.260 | 354 | 155 | 7 | 9 | 349 | 11 | 363 | 5.84e-123 | 362 |
| Msa1429010 | MtrunA17_Chr4g0058081 | 53.161 | 348 | 151 | 7 | 7 | 349 | 5 | 345 | 1.99e-122 | 357 |
| Msa1429010 | MtrunA17_Chr3g0116551 | 51.862 | 349 | 157 | 5 | 5 | 348 | 3 | 345 | 2.95e-122 | 356 |
| Msa1429010 | MtrunA17_Chr4g0053311 | 49.128 | 344 | 164 | 4 | 11 | 348 | 4 | 342 | 3.80e-120 | 351 |
| Msa1429010 | MtrunA17_Chr4g0041061 | 50.867 | 346 | 155 | 7 | 9 | 347 | 7 | 344 | 8.04e-119 | 347 |
| Msa1429010 | MtrunA17_Chr4g0041081 | 53.205 | 312 | 135 | 5 | 43 | 347 | 37 | 344 | 1.46e-118 | 346 |
| Msa1429010 | MtrunA17_Chr4g0024411 | 54.603 | 315 | 131 | 6 | 41 | 347 | 32 | 342 | 2.60e-118 | 345 |
| Msa1429010 | MtrunA17_Chr4g0040881 | 52.830 | 318 | 139 | 5 | 37 | 347 | 31 | 344 | 3.82e-118 | 345 |
| Msa1429010 | MtrunA17_Chr4g0041481 | 55.340 | 309 | 129 | 6 | 43 | 347 | 36 | 339 | 3.54e-116 | 340 |
| Msa1429010 | MtrunA17_Chr5g0405751 | 54.313 | 313 | 131 | 6 | 43 | 347 | 35 | 343 | 3.67e-116 | 340 |
| Msa1429010 | MtrunA17_Chr1g0153011 | 48.179 | 357 | 154 | 6 | 4 | 348 | 6 | 343 | 1.24e-115 | 343 |
| Msa1429010 | MtrunA17_Chr4g0060251 | 53.165 | 316 | 136 | 6 | 40 | 347 | 33 | 344 | 2.61e-115 | 338 |
| Msa1429010 | MtrunA17_Chr4g0041521 | 54.693 | 309 | 131 | 6 | 43 | 347 | 36 | 339 | 1.34e-113 | 333 |
| Msa1429010 | MtrunA17_Chr3g0142071 | 53.074 | 309 | 140 | 3 | 45 | 348 | 48 | 356 | 3.78e-112 | 334 |
| Msa1429010 | MtrunA17_Chr4g0040851 | 51.438 | 313 | 143 | 4 | 36 | 346 | 53 | 358 | 1.08e-109 | 324 |
| Msa1429010 | MtrunA17_Chr2g0315491 | 53.503 | 314 | 133 | 6 | 41 | 347 | 33 | 340 | 3.22e-109 | 322 |
| Msa1429010 | MtrunA17_Chr2g0283901 | 48.837 | 344 | 166 | 6 | 13 | 349 | 17 | 357 | 1.40e-108 | 326 |
| Msa1429010 | MtrunA17_Chr2g0319991 | 49.201 | 313 | 151 | 5 | 42 | 346 | 30 | 342 | 9.33e-105 | 311 |
| Msa1429010 | MtrunA17_Chr4g0041471 | 50.809 | 309 | 136 | 6 | 48 | 346 | 38 | 340 | 1.05e-102 | 306 |
| Msa1429010 | MtrunA17_Chr2g0325121 | 49.175 | 303 | 149 | 3 | 47 | 348 | 39 | 337 | 8.29e-101 | 301 |
| Msa1429010 | MtrunA17_Chr7g0248391 | 47.249 | 309 | 148 | 8 | 43 | 346 | 38 | 336 | 1.11e-93 | 283 |
| Msa1429010 | MtrunA17_Chr7g0248811 | 46.753 | 308 | 152 | 7 | 43 | 346 | 35 | 334 | 3.97e-89 | 271 |
| Msa1429010 | MtrunA17_Chr2g0283741 | 39.773 | 352 | 195 | 11 | 9 | 348 | 13 | 359 | 4.60e-83 | 256 |
| Msa1429010 | MtrunA17_Chr8g0379151 | 40.833 | 360 | 193 | 12 | 1 | 348 | 22 | 373 | 2.28e-78 | 244 |
| Msa1429010 | MtrunA17_Chr0c27g0493921 | 41.042 | 307 | 166 | 9 | 47 | 347 | 51 | 348 | 1.50e-68 | 218 |
| Msa1429010 | MtrunA17_Chr2g0283671 | 50.000 | 228 | 109 | 5 | 120 | 346 | 3 | 226 | 1.18e-66 | 209 |
| Msa1429010 | MtrunA17_Chr4g0070441 | 41.275 | 298 | 160 | 9 | 47 | 338 | 51 | 339 | 7.72e-66 | 211 |
| Msa1429010 | MtrunA17_Chr1g0155781 | 39.683 | 315 | 165 | 8 | 47 | 344 | 51 | 357 | 6.11e-65 | 209 |
| Msa1429010 | MtrunA17_Chr4g0035551 | 38.413 | 315 | 168 | 9 | 47 | 344 | 48 | 353 | 5.68e-63 | 204 |
| Msa1429010 | MtrunA17_Chr2g0311381 | 38.965 | 367 | 184 | 15 | 7 | 349 | 2 | 352 | 7.47e-62 | 201 |
| Msa1429010 | MtrunA17_Chr2g0311471 | 41.346 | 312 | 164 | 10 | 48 | 345 | 37 | 343 | 2.50e-61 | 200 |
| Msa1429010 | MtrunA17_Chr1g0199131 | 36.286 | 350 | 193 | 8 | 17 | 344 | 22 | 363 | 3.35e-60 | 198 |
| Msa1429010 | MtrunA17_Chr2g0311391 | 36.919 | 344 | 164 | 13 | 48 | 347 | 37 | 371 | 5.64e-57 | 189 |
| Msa1429010 | MtrunA17_Chr2g0283751 | 39.502 | 281 | 152 | 11 | 9 | 278 | 13 | 286 | 9.93e-55 | 181 |
| Msa1429010 | MtrunA17_Chr1g0156161 | 41.494 | 241 | 131 | 8 | 110 | 345 | 26 | 261 | 2.75e-54 | 179 |
| Msa1429010 | MtrunA17_Chr4g0036731 | 37.183 | 355 | 163 | 13 | 7 | 344 | 6 | 317 | 8.92e-54 | 179 |
| Msa1429010 | MtrunA17_Chr4g0037291 | 35.655 | 359 | 167 | 13 | 7 | 344 | 47 | 362 | 1.43e-50 | 172 |
| Msa1429010 | MtrunA17_Chr4g0036281 | 35.294 | 357 | 171 | 13 | 7 | 344 | 6 | 321 | 7.37e-50 | 169 |
| Msa1429010 | MtrunA17_Chr7g0248421 | 43.204 | 206 | 96 | 5 | 98 | 302 | 15 | 200 | 1.52e-44 | 152 |
| Msa1429010 | MtrunA17_Chr7g0248371 | 56.122 | 98 | 41 | 2 | 250 | 346 | 34 | 130 | 5.24e-32 | 117 |
| Msa1429010 | MtrunA17_Chr2g0283661 | 46.552 | 116 | 60 | 2 | 233 | 347 | 157 | 271 | 4.47e-30 | 115 |
| Msa1429010 | MtrunA17_Chr2g0283661 | 42.636 | 129 | 69 | 4 | 43 | 167 | 29 | 156 | 3.45e-24 | 100 |
| Msa1429010 | MtrunA17_Chr2g0311091 | 41.333 | 150 | 73 | 3 | 48 | 182 | 35 | 184 | 2.72e-27 | 106 |
| Msa1429010 | MtrunA17_Chr1g0156771 | 49.505 | 101 | 47 | 3 | 132 | 229 | 55 | 154 | 4.45e-24 | 96.7 |
| Msa1429010 | MtrunA17_Chr7g0248661 | 56.757 | 74 | 31 | 1 | 274 | 346 | 2 | 75 | 2.26e-22 | 89.4 |
| Msa1429010 | MtrunA17_Chr7g0271041 | 27.839 | 273 | 162 | 12 | 94 | 339 | 66 | 330 | 1.39e-19 | 88.6 |
| Msa1429010 | MtrunA17_Chr7g0271031 | 26.571 | 350 | 218 | 16 | 19 | 339 | 35 | 374 | 5.20e-18 | 84.3 |
| Msa1429010 | MtrunA17_Chr8g0379671 | 31.008 | 129 | 80 | 4 | 173 | 300 | 23 | 143 | 5.69e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1429010 | AT1G20850.1 | 77.744 | 328 | 71 | 2 | 25 | 350 | 29 | 356 | 0.0 | 531 |
| Msa1429010 | AT4G35350.1 | 68.732 | 355 | 106 | 2 | 1 | 350 | 1 | 355 | 0.0 | 528 |
| Msa1429010 | AT4G35350.2 | 66.549 | 284 | 90 | 2 | 1 | 279 | 1 | 284 | 8.21e-143 | 406 |
| Msa1429010 | AT1G47128.1 | 51.404 | 356 | 162 | 3 | 1 | 348 | 1 | 353 | 4.81e-129 | 377 |
| Msa1429010 | AT5G50260.1 | 55.072 | 345 | 144 | 5 | 9 | 348 | 5 | 343 | 8.63e-129 | 373 |
| Msa1429010 | AT5G43060.1 | 53.056 | 360 | 153 | 5 | 1 | 349 | 1 | 355 | 9.98e-129 | 377 |
| Msa1429010 | AT3G19390.1 | 54.070 | 344 | 149 | 6 | 8 | 348 | 9 | 346 | 1.02e-125 | 369 |
| Msa1429010 | AT3G48340.1 | 51.471 | 340 | 158 | 3 | 15 | 348 | 6 | 344 | 2.59e-118 | 347 |
| Msa1429010 | AT1G09850.1 | 53.074 | 309 | 144 | 1 | 41 | 348 | 26 | 334 | 7.38e-115 | 340 |
| Msa1429010 | AT4G36880.1 | 50.155 | 323 | 149 | 4 | 38 | 348 | 40 | 362 | 9.51e-112 | 330 |
| Msa1429010 | AT5G45890.1 | 48.680 | 341 | 160 | 7 | 17 | 347 | 10 | 345 | 1.23e-110 | 326 |
| Msa1429010 | AT3G19400.1 | 51.948 | 308 | 142 | 6 | 46 | 348 | 43 | 349 | 1.74e-108 | 322 |
| Msa1429010 | AT4G11310.1 | 46.893 | 354 | 175 | 6 | 5 | 348 | 3 | 353 | 3.07e-107 | 318 |
| Msa1429010 | AT1G06260.1 | 48.538 | 342 | 166 | 5 | 8 | 348 | 11 | 343 | 2.27e-106 | 315 |
| Msa1429010 | AT4G11320.2 | 46.067 | 356 | 181 | 6 | 1 | 348 | 8 | 360 | 3.07e-106 | 316 |
| Msa1429010 | AT4G11320.1 | 46.067 | 356 | 181 | 6 | 1 | 348 | 8 | 360 | 3.07e-106 | 316 |
| Msa1429010 | AT3G48350.1 | 47.688 | 346 | 169 | 6 | 9 | 348 | 5 | 344 | 1.61e-105 | 314 |
| Msa1429010 | AT4G23520.1 | 44.444 | 351 | 191 | 4 | 1 | 348 | 1 | 350 | 2.86e-105 | 313 |
| Msa1429010 | AT3G49340.1 | 47.910 | 311 | 151 | 6 | 44 | 346 | 32 | 339 | 4.66e-99 | 296 |
| Msa1429010 | AT2G27420.1 | 47.319 | 317 | 151 | 6 | 44 | 346 | 32 | 346 | 3.04e-97 | 292 |
| Msa1429010 | AT1G29090.1 | 47.452 | 314 | 154 | 6 | 43 | 347 | 43 | 354 | 3.05e-95 | 287 |
| Msa1429010 | AT2G34080.1 | 46.154 | 312 | 159 | 5 | 43 | 347 | 35 | 344 | 2.12e-94 | 285 |
| Msa1429010 | AT1G29080.1 | 42.274 | 343 | 184 | 9 | 15 | 347 | 7 | 345 | 3.02e-91 | 277 |
| Msa1429010 | AT3G43960.1 | 45.370 | 324 | 166 | 9 | 33 | 348 | 27 | 347 | 5.19e-86 | 265 |
| Msa1429010 | AT1G29110.1 | 37.353 | 340 | 191 | 6 | 17 | 347 | 7 | 333 | 5.05e-80 | 248 |
| Msa1429010 | AT3G19400.2 | 51.899 | 237 | 108 | 6 | 46 | 277 | 43 | 278 | 7.31e-77 | 238 |
| Msa1429010 | AT3G48350.2 | 45.161 | 279 | 142 | 5 | 9 | 282 | 5 | 277 | 1.50e-74 | 233 |
| Msa1429010 | AT5G60360.1 | 42.810 | 306 | 160 | 9 | 47 | 346 | 59 | 355 | 1.81e-74 | 234 |
| Msa1429010 | AT5G60360.2 | 42.484 | 306 | 160 | 10 | 47 | 346 | 59 | 354 | 6.86e-72 | 228 |
| Msa1429010 | AT5G60360.3 | 42.667 | 300 | 157 | 9 | 47 | 340 | 59 | 349 | 1.05e-71 | 227 |
| Msa1429010 | AT4G39090.1 | 39.940 | 333 | 171 | 9 | 29 | 344 | 37 | 357 | 4.46e-70 | 223 |
| Msa1429010 | AT2G21430.1 | 39.634 | 328 | 169 | 9 | 34 | 344 | 39 | 354 | 4.83e-69 | 220 |
| Msa1429010 | AT3G45310.1 | 40.717 | 307 | 167 | 9 | 47 | 347 | 59 | 356 | 2.78e-67 | 216 |
| Msa1429010 | AT3G45310.2 | 39.474 | 304 | 173 | 7 | 47 | 344 | 59 | 357 | 4.89e-65 | 210 |
| Msa1429010 | AT4G16190.1 | 38.720 | 328 | 173 | 9 | 35 | 344 | 46 | 363 | 3.91e-61 | 200 |
| Msa1429010 | AT3G54940.2 | 35.376 | 359 | 200 | 9 | 10 | 344 | 9 | 359 | 1.02e-59 | 196 |
| Msa1429010 | AT3G54940.3 | 33.829 | 269 | 163 | 4 | 10 | 264 | 9 | 276 | 4.36e-45 | 156 |
| Msa1429010 | AT4G01610.1 | 26.562 | 320 | 193 | 15 | 59 | 349 | 36 | 342 | 1.26e-16 | 80.5 |
| Msa1429010 | AT4G01610.2 | 26.250 | 320 | 194 | 15 | 59 | 349 | 36 | 342 | 1.74e-15 | 77.0 |
Find 97 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCAGGTTCGAGGTCTTTA+AGG | 0.183217 | tig0026425:-34497 | Msa1429010:CDS |
| AAGGAAATTATGAAATTTAA+TGG | 0.188919 | tig0026425:+33033 | None:intergenic |
| ACTGATGTTGTGACTATTAA+TGG | 0.222069 | tig0026425:-33501 | Msa1429010:CDS |
| CATTGCTTCAAAGGAAAATA+TGG | 0.243961 | tig0026425:+32968 | None:intergenic |
| TCAAATTCCCTGTCACAATT+TGG | 0.244699 | tig0026425:+33799 | None:intergenic |
| GCAGGTCAGGACAAGTGTTT+TGG | 0.258810 | tig0026425:+34675 | None:intergenic |
| GGAAGATTATCCTTACATTA+TGG | 0.312016 | tig0026425:-33658 | Msa1429010:CDS |
| ATCTCTGCCTGAAGCCTCTA+TGG | 0.319266 | tig0026425:+33407 | None:intergenic |
| ACTTGTTCTTGAACTCTTGA+TGG | 0.328420 | tig0026425:+34395 | None:intergenic |
| ATATGGTACATCAAAGGGTT+TGG | 0.369364 | tig0026425:-33217 | Msa1429010:CDS |
| TTATTTCTATCTTTAGCATT+TGG | 0.374681 | tig0026425:-34643 | Msa1429010:CDS |
| GCAACAATGTGTTATTGAAT+TGG | 0.378685 | tig0026425:+34719 | None:intergenic |
| CATTTGTAGGGTGTGTTTGA+TGG | 0.384261 | tig0026425:-33282 | Msa1429010:intron |
| AAGCACTTGCGAGATGAAAA+AGG | 0.391386 | tig0026425:-33631 | Msa1429010:intron |
| GAGTACTTGCAGGTAGTTGC+TGG | 0.397924 | tig0026425:-33857 | Msa1429010:intron |
| AACATACTCCACTATAGAAC+TGG | 0.404978 | tig0026425:+33382 | None:intergenic |
| CATTGACCTTGATTCTTGAC+CGG | 0.416938 | tig0026425:+34256 | None:intergenic |
| ACATTATAGTGAAGAATTCA+TGG | 0.418831 | tig0026425:-33191 | Msa1429010:CDS |
| TTTCTCCAATCAACTGACTT+AGG | 0.421540 | tig0026425:+34295 | None:intergenic |
| TCAACTGTTGCCGCGGTTGA+AGG | 0.428053 | tig0026425:-33828 | Msa1429010:CDS |
| ATAAGCATAAGGAGCAGGTC+AGG | 0.428907 | tig0026425:+34662 | None:intergenic |
| GGAGCAAAGTGGGGTGAGAA+AGG | 0.429527 | tig0026425:-33168 | Msa1429010:CDS |
| ATTTGCCTAAGTCAGTTGAT+TGG | 0.430861 | tig0026425:-34300 | Msa1429010:CDS |
| CTTACAACAATGGTTGCAAT+GGG | 0.434061 | tig0026425:-33737 | Msa1429010:CDS |
| GGGGTGAGAAAGGGTTTATA+AGG | 0.436382 | tig0026425:-33158 | Msa1429010:CDS |
| TAACACATTGTTGCCAATCA+TGG | 0.437681 | tig0026425:-34710 | Msa1429010:exon |
| TTACAATAACATTGCTTCAA+AGG | 0.446603 | tig0026425:+32959 | None:intergenic |
| GGTGTGTCAGCCGTTGGATA+TGG | 0.454497 | tig0026425:-33234 | Msa1429010:CDS |
| AGTTCAAGAACAAGTATCTT+GGG | 0.458742 | tig0026425:-34387 | Msa1429010:CDS |
| GAACAAGTATCTTGGGCTAA+AGG | 0.462245 | tig0026425:-34380 | Msa1429010:CDS |
| GAGTTCAAGAACAAGTATCT+TGG | 0.466462 | tig0026425:-34388 | Msa1429010:CDS |
| AGAGATTTCCAGTTCTATAG+TGG | 0.466790 | tig0026425:-33390 | Msa1429010:CDS |
| GGAATAAACCAAATTGTGAC+AGG | 0.467218 | tig0026425:-33807 | Msa1429010:CDS |
| GAATTCATGGGGAGCAAAGT+GGG | 0.481502 | tig0026425:-33178 | Msa1429010:CDS |
| TCCATGGACTTCAAGTCCTC+TGG | 0.486674 | tig0026425:+34592 | None:intergenic |
| TAATGAACAAAGCTTATTGA+AGG | 0.491336 | tig0026425:-33457 | Msa1429010:CDS |
| GAAGATTGAATATAAGAGAA+GGG | 0.491695 | tig0026425:+34758 | None:intergenic |
| GAGCAAAGTGGGGTGAGAAA+GGG | 0.494121 | tig0026425:-33167 | Msa1429010:CDS |
| ATCTAAAGCACATTGATGAT+AGG | 0.494574 | tig0026425:-34471 | Msa1429010:CDS |
| GTGCTTTCCTCCATAATGTA+AGG | 0.494914 | tig0026425:+33648 | None:intergenic |
| TCATTGAACTCTTCGAATCA+TGG | 0.495674 | tig0026425:-34564 | Msa1429010:CDS |
| TAGAAATAAGCATAAGGAGC+AGG | 0.496949 | tig0026425:+34657 | None:intergenic |
| ACAAGGTTGTCAGCAACTAC+TGG | 0.500291 | tig0026425:-34447 | Msa1429010:CDS |
| GGAAAGTCCGAAGGGATTTG+TGG | 0.502529 | tig0026425:-33120 | Msa1429010:CDS |
| AGAAGATTGAATATAAGAGA+AGG | 0.502963 | tig0026425:+34757 | None:intergenic |
| GTTGTCAGCAACTACTGGCT+TGG | 0.503373 | tig0026425:-34442 | Msa1429010:CDS |
| ATTGACCTTGATTCTTGACC+GGG | 0.509041 | tig0026425:+34257 | None:intergenic |
| TCAGTTGATTGGAGAAAGAA+AGG | 0.509647 | tig0026425:-34289 | Msa1429010:CDS |
| TAAAGATAGAAATAAGCATA+AGG | 0.512917 | tig0026425:+34651 | None:intergenic |
| GTTGGATATGGTACATCAAA+GGG | 0.516544 | tig0026425:-33222 | Msa1429010:CDS |
| CTATGGCCACACTGAGTGGT+TGG | 0.516563 | tig0026425:+33424 | None:intergenic |
| CGTTGGATATGGTACATCAA+AGG | 0.524173 | tig0026425:-33223 | Msa1429010:CDS |
| ATAAGGATGAAGAGAAACAT+TGG | 0.526478 | tig0026425:-33141 | Msa1429010:CDS |
| CATTATAGTGAAGAATTCAT+GGG | 0.532840 | tig0026425:-33190 | Msa1429010:CDS |
| ACTTACAACAATGGTTGCAA+TGG | 0.533682 | tig0026425:-33738 | Msa1429010:CDS |
| GGACGTGATTTCTCCATCGT+GGG | 0.535021 | tig0026425:-34622 | Msa1429010:CDS |
| GTAGAGTCCACAAATCCCTT+CGG | 0.538827 | tig0026425:+33113 | None:intergenic |
| TACAACAATGGTTGCAATGG+GGG | 0.543003 | tig0026425:-33735 | Msa1429010:CDS |
| ACCACTCAGTGTGGCCATAG+AGG | 0.545434 | tig0026425:-33421 | Msa1429010:CDS |
| AAAGAAAGGTGCTGTAACCC+CGG | 0.549002 | tig0026425:-34275 | Msa1429010:CDS |
| TAAAGGTTGACTTGTCTCAA+AGG | 0.550091 | tig0026425:-34363 | Msa1429010:CDS |
| GATCATGGTGTGTCAGCCGT+TGG | 0.556769 | tig0026425:-33240 | Msa1429010:CDS |
| GTAACCCCGGTCAAGAATCA+AGG | 0.557737 | tig0026425:-34262 | Msa1429010:CDS |
| AAACGGTGGACTACATAAAG+AGG | 0.559559 | tig0026425:-33679 | Msa1429010:CDS |
| AGTGTGGCCATAGAGGCTTC+AGG | 0.567247 | tig0026425:-33414 | Msa1429010:CDS |
| GAGTTCAATGAGCTTATCCA+TGG | 0.571450 | tig0026425:+34576 | None:intergenic |
| ACCAGAGGACTTGAAGTCCA+TGG | 0.576800 | tig0026425:-34593 | Msa1429010:CDS |
| TGGACGTGATTTCTCCATCG+TGG | 0.576917 | tig0026425:-34623 | Msa1429010:CDS |
| AGAAACATTGGAAAGTCCGA+AGG | 0.577636 | tig0026425:-33129 | Msa1429010:CDS |
| TGCGGAAGTGAACTAGATCA+TGG | 0.579661 | tig0026425:-33255 | Msa1429010:CDS |
| CCATTGAAGAAAAGCTACTC+AGG | 0.581738 | tig0026425:-34513 | Msa1429010:CDS |
| AGAAAAGCTACTCAGGTTCG+AGG | 0.582875 | tig0026425:-34506 | Msa1429010:CDS |
| AAGGAGAGAGTCCTCAGAAG+AGG | 0.591057 | tig0026425:-34344 | Msa1429010:CDS |
| CAAAGAAGAAATTAAGACAA+AGG | 0.591687 | tig0026425:+33014 | None:intergenic |
| AGAATTCATGGGGAGCAAAG+TGG | 0.591803 | tig0026425:-33179 | Msa1429010:CDS |
| GGCCACACTGAGTGGTTGGT+TGG | 0.597846 | tig0026425:+33428 | None:intergenic |
| ATAAGTGAATTCCTCTTCTG+AGG | 0.598495 | tig0026425:+34333 | None:intergenic |
| AGTACTTGCAGGTAGTTGCT+GGG | 0.604719 | tig0026425:-33856 | Msa1429010:intron |
| GCCTCTATGGCCACACTGAG+TGG | 0.610194 | tig0026425:+33420 | None:intergenic |
| TTGGTTTATTCCTTCAACCG+CGG | 0.610274 | tig0026425:+33818 | None:intergenic |
| AGATTATCCTTACATTATGG+AGG | 0.615877 | tig0026425:-33655 | Msa1429010:CDS |
| GATTTGTGGACTCTACAAGA+TGG | 0.625513 | tig0026425:-33106 | Msa1429010:CDS |
| CTTTGATGTACCATATCCAA+CGG | 0.626421 | tig0026425:+33224 | None:intergenic |
| TGCGACACAACTTACAACAA+TGG | 0.635197 | tig0026425:-33747 | Msa1429010:CDS |
| CTCTGGTGAATAGCCCACGA+TGG | 0.663678 | tig0026425:+34609 | None:intergenic |
| ATTATAGTGAAGAATTCATG+GGG | 0.665269 | tig0026425:-33189 | Msa1429010:CDS |
| GAAACATTGGAAAGTCCGAA+GGG | 0.667328 | tig0026425:-33128 | Msa1429010:CDS |
| GCACATTGATGATAGGAACA+AGG | 0.668624 | tig0026425:-34464 | Msa1429010:CDS |
| AATTCATGGGGAGCAAAGTG+GGG | 0.670875 | tig0026425:-33177 | Msa1429010:CDS |
| TGCCAACCAACCACTCAGTG+TGG | 0.678227 | tig0026425:-33430 | Msa1429010:CDS |
| CATCGTGGGCTATTCACCAG+AGG | 0.679810 | tig0026425:-34608 | Msa1429010:CDS |
| GTCAAGAATCAAGGTCAATG+TGG | 0.700857 | tig0026425:-34253 | Msa1429010:intron |
| GAATAAACCAAATTGTGACA+GGG | 0.702620 | tig0026425:-33806 | Msa1429010:CDS |
| TTACAACAATGGTTGCAATG+GGG | 0.703567 | tig0026425:-33736 | Msa1429010:CDS |
| TTGACCTTGATTCTTGACCG+GGG | 0.717921 | tig0026425:+34258 | None:intergenic |
| GAATCATGGATATCGAGACA+CGG | 0.750844 | tig0026425:-34550 | Msa1429010:CDS |
| GGTGTGTTTGATGGACATTG+CGG | 0.757484 | tig0026425:-33273 | Msa1429010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTATTATTTTTTTTAA+TGG | - | tig0026425:34275-34294 | Msa1429010:CDS | 0.0% |
| !!! | TAATTATTATTTTTTTTAAT+GGG | - | tig0026425:34276-34295 | Msa1429010:CDS | 0.0% |
| !!! | TTAATTATTATTTTTTTTAA+TGG | - | tig0026425:34275-34294 | Msa1429010:CDS | 0.0% |
| !!! | TAATTATTATTTTTTTTAAT+GGG | - | tig0026425:34276-34295 | Msa1429010:CDS | 0.0% |
| !! | TTATATATACTATTGGATAA+CGG | - | tig0026425:33678-33697 | Msa1429010:CDS | 15.0% |
| !!! | AAATCTTATTTCTTTTTAGT+GGG | + | tig0026425:34555-34574 | None:intergenic | 15.0% |
| !!! | TAAATCTTATTTCTTTTTAG+TGG | + | tig0026425:34556-34575 | None:intergenic | 15.0% |
| !! | AAGGAAATTATGAAATTTAA+TGG | + | tig0026425:34597-34616 | None:intergenic | 15.0% |
| !! | TTATATATACTATTGGATAA+CGG | - | tig0026425:33678-33697 | Msa1429010:CDS | 15.0% |
| !!! | AAATCTTATTTCTTTTTAGT+GGG | + | tig0026425:34555-34574 | None:intergenic | 15.0% |
| !!! | TAAATCTTATTTCTTTTTAG+TGG | + | tig0026425:34556-34575 | None:intergenic | 15.0% |
| !! | AAGGAAATTATGAAATTTAA+TGG | + | tig0026425:34597-34616 | None:intergenic | 15.0% |
| !! | TAAAGATAGAAATAAGCATA+AGG | + | tig0026425:32979-32998 | None:intergenic | 20.0% |
| !!! | TTATTTCTATCTTTAGCATT+TGG | - | tig0026425:32984-33003 | Msa1429010:three_prime_UTR | 20.0% |
| !! | GTTCAGTTTATATATACTAT+TGG | - | tig0026425:33671-33690 | Msa1429010:CDS | 20.0% |
| !! | ATAAGTAACATAACTTTCAT+TGG | - | tig0026425:34084-34103 | Msa1429010:intron | 20.0% |
| !! | ATTATTTAACTACCATTTGT+AGG | - | tig0026425:34332-34351 | Msa1429010:CDS | 20.0% |
| !! | TTATTTAACTACCATTTGTA+GGG | - | tig0026425:34333-34352 | Msa1429010:CDS | 20.0% |
| !! | TAAAGATAGAAATAAGCATA+AGG | + | tig0026425:32979-32998 | None:intergenic | 20.0% |
| !!! | TTATTTCTATCTTTAGCATT+TGG | - | tig0026425:32984-33003 | Msa1429010:three_prime_UTR | 20.0% |
| !! | GTTCAGTTTATATATACTAT+TGG | - | tig0026425:33671-33690 | Msa1429010:CDS | 20.0% |
| !! | ATAAGTAACATAACTTTCAT+TGG | - | tig0026425:34084-34103 | Msa1429010:intron | 20.0% |
| !! | ATTATTTAACTACCATTTGT+AGG | - | tig0026425:34332-34351 | Msa1429010:CDS | 20.0% |
| !! | TTATTTAACTACCATTTGTA+GGG | - | tig0026425:34333-34352 | Msa1429010:CDS | 20.0% |
| ! | GAAGATTGAATATAAGAGAA+GGG | + | tig0026425:32872-32891 | None:intergenic | 25.0% |
| ! | AGAAGATTGAATATAAGAGA+AGG | + | tig0026425:32873-32892 | None:intergenic | 25.0% |
| ! | ATCATTGAATTGATATCAGA+CGG | + | tig0026425:33535-33554 | None:intergenic | 25.0% |
| ! | TTCTCCTTCATTGTAAAAAA+CGG | - | tig0026425:33931-33950 | Msa1429010:intron | 25.0% |
| !!! | AAGCTTTGTTCATTATTTTG+TGG | + | tig0026425:34165-34184 | None:intergenic | 25.0% |
| ! | TAATGAACAAAGCTTATTGA+AGG | - | tig0026425:34170-34189 | Msa1429010:intron | 25.0% |
| ! | ACATTATAGTGAAGAATTCA+TGG | - | tig0026425:34436-34455 | Msa1429010:CDS | 25.0% |
| ! | CATTATAGTGAAGAATTCAT+GGG | - | tig0026425:34437-34456 | Msa1429010:CDS | 25.0% |
| ! | ATTATAGTGAAGAATTCATG+GGG | - | tig0026425:34438-34457 | Msa1429010:CDS | 25.0% |
| ! | CAAAGAAGAAATTAAGACAA+AGG | + | tig0026425:34616-34635 | None:intergenic | 25.0% |
| ! | TTACAATAACATTGCTTCAA+AGG | + | tig0026425:34671-34690 | None:intergenic | 25.0% |
| ! | GAAGATTGAATATAAGAGAA+GGG | + | tig0026425:32872-32891 | None:intergenic | 25.0% |
| ! | AGAAGATTGAATATAAGAGA+AGG | + | tig0026425:32873-32892 | None:intergenic | 25.0% |
| ! | ATCATTGAATTGATATCAGA+CGG | + | tig0026425:33535-33554 | None:intergenic | 25.0% |
| ! | TTCTCCTTCATTGTAAAAAA+CGG | - | tig0026425:33931-33950 | Msa1429010:intron | 25.0% |
| !!! | AAGCTTTGTTCATTATTTTG+TGG | + | tig0026425:34165-34184 | None:intergenic | 25.0% |
| ! | TAATGAACAAAGCTTATTGA+AGG | - | tig0026425:34170-34189 | Msa1429010:intron | 25.0% |
| ! | ACATTATAGTGAAGAATTCA+TGG | - | tig0026425:34436-34455 | Msa1429010:CDS | 25.0% |
| ! | CATTATAGTGAAGAATTCAT+GGG | - | tig0026425:34437-34456 | Msa1429010:CDS | 25.0% |
| ! | ATTATAGTGAAGAATTCATG+GGG | - | tig0026425:34438-34457 | Msa1429010:CDS | 25.0% |
| ! | CAAAGAAGAAATTAAGACAA+AGG | + | tig0026425:34616-34635 | None:intergenic | 25.0% |
| ! | TTACAATAACATTGCTTCAA+AGG | + | tig0026425:34671-34690 | None:intergenic | 25.0% |
| ! | GCAACAATGTGTTATTGAAT+TGG | + | tig0026425:32911-32930 | None:intergenic | 30.0% |
| ! | ATCTAAAGCACATTGATGAT+AGG | - | tig0026425:33156-33175 | Msa1429010:CDS | 30.0% |
| AGTTCAAGAACAAGTATCTT+GGG | - | tig0026425:33240-33259 | Msa1429010:CDS | 30.0% | |
| TAGGCATGTTTACATATAGT+AGG | + | tig0026425:33596-33615 | None:intergenic | 30.0% | |
| AGCGAAAAATTTGCATGATT+AGG | + | tig0026425:33615-33634 | None:intergenic | 30.0% | |
| GAATAAACCAAATTGTGACA+GGG | - | tig0026425:33821-33840 | Msa1429010:CDS | 30.0% | |
| GGAAGATTATCCTTACATTA+TGG | - | tig0026425:33969-33988 | Msa1429010:intron | 30.0% | |
| AGATTATCCTTACATTATGG+AGG | - | tig0026425:33972-33991 | Msa1429010:intron | 30.0% | |
| ACTGATGTTGTGACTATTAA+TGG | - | tig0026425:34126-34145 | Msa1429010:intron | 30.0% | |
| TGGGTGAATCTAATCTTAAA+TGG | - | tig0026425:34295-34314 | Msa1429010:CDS | 30.0% | |
| ATAAGGATGAAGAGAAACAT+TGG | - | tig0026425:34486-34505 | Msa1429010:CDS | 30.0% | |
| CATTGCTTCAAAGGAAAATA+TGG | + | tig0026425:34662-34681 | None:intergenic | 30.0% | |
| ! | GCAACAATGTGTTATTGAAT+TGG | + | tig0026425:32911-32930 | None:intergenic | 30.0% |
| ! | ATCTAAAGCACATTGATGAT+AGG | - | tig0026425:33156-33175 | Msa1429010:CDS | 30.0% |
| AGTTCAAGAACAAGTATCTT+GGG | - | tig0026425:33240-33259 | Msa1429010:CDS | 30.0% | |
| TAGGCATGTTTACATATAGT+AGG | + | tig0026425:33596-33615 | None:intergenic | 30.0% | |
| AGCGAAAAATTTGCATGATT+AGG | + | tig0026425:33615-33634 | None:intergenic | 30.0% | |
| GAATAAACCAAATTGTGACA+GGG | - | tig0026425:33821-33840 | Msa1429010:CDS | 30.0% | |
| GGAAGATTATCCTTACATTA+TGG | - | tig0026425:33969-33988 | Msa1429010:intron | 30.0% | |
| AGATTATCCTTACATTATGG+AGG | - | tig0026425:33972-33991 | Msa1429010:intron | 30.0% | |
| ACTGATGTTGTGACTATTAA+TGG | - | tig0026425:34126-34145 | Msa1429010:intron | 30.0% | |
| TGGGTGAATCTAATCTTAAA+TGG | - | tig0026425:34295-34314 | Msa1429010:CDS | 30.0% | |
| ATAAGGATGAAGAGAAACAT+TGG | - | tig0026425:34486-34505 | Msa1429010:CDS | 30.0% | |
| CATTGCTTCAAAGGAAAATA+TGG | + | tig0026425:34662-34681 | None:intergenic | 30.0% | |
| TAACACATTGTTGCCAATCA+TGG | - | tig0026425:32917-32936 | Msa1429010:three_prime_UTR | 35.0% | |
| TAGAAATAAGCATAAGGAGC+AGG | + | tig0026425:32973-32992 | None:intergenic | 35.0% | |
| TCATTGAACTCTTCGAATCA+TGG | - | tig0026425:33063-33082 | Msa1429010:exon | 35.0% | |
| ACTTGTTCTTGAACTCTTGA+TGG | + | tig0026425:33235-33254 | None:intergenic | 35.0% | |
| GAGTTCAAGAACAAGTATCT+TGG | - | tig0026425:33239-33258 | Msa1429010:CDS | 35.0% | |
| !! | TAAAGGTTGACTTGTCTCAA+AGG | - | tig0026425:33264-33283 | Msa1429010:CDS | 35.0% |
| ATAAGTGAATTCCTCTTCTG+AGG | + | tig0026425:33297-33316 | None:intergenic | 35.0% | |
| ATTTGCCTAAGTCAGTTGAT+TGG | - | tig0026425:33327-33346 | Msa1429010:intron | 35.0% | |
| ! | TTTCTCCAATCAACTGACTT+AGG | + | tig0026425:33335-33354 | None:intergenic | 35.0% |
| TCAGTTGATTGGAGAAAGAA+AGG | - | tig0026425:33338-33357 | Msa1429010:intron | 35.0% | |
| GGAATAAACCAAATTGTGAC+AGG | - | tig0026425:33820-33839 | Msa1429010:CDS | 35.0% | |
| TCAAATTCCCTGTCACAATT+TGG | + | tig0026425:33831-33850 | None:intergenic | 35.0% | |
| ACTTACAACAATGGTTGCAA+TGG | - | tig0026425:33889-33908 | Msa1429010:intron | 35.0% | |
| CTTACAACAATGGTTGCAAT+GGG | - | tig0026425:33890-33909 | Msa1429010:intron | 35.0% | |
| TTACAACAATGGTTGCAATG+GGG | - | tig0026425:33891-33910 | Msa1429010:intron | 35.0% | |
| TCCTTCATTGTAAAAAACGG+TGG | - | tig0026425:33934-33953 | Msa1429010:intron | 35.0% | |
| !!! | TCCACCGTTTTTTACAATGA+AGG | + | tig0026425:33938-33957 | None:intergenic | 35.0% |
| !! | TTTCATTGGTTTGTTTCACC+AGG | - | tig0026425:34098-34117 | Msa1429010:intron | 35.0% |
| AGAGATTTCCAGTTCTATAG+TGG | - | tig0026425:34237-34256 | Msa1429010:intron | 35.0% | |
| AACATACTCCACTATAGAAC+TGG | + | tig0026425:34248-34267 | None:intergenic | 35.0% | |
| CTTTGATGTACCATATCCAA+CGG | + | tig0026425:34406-34425 | None:intergenic | 35.0% | |
| GTTGGATATGGTACATCAAA+GGG | - | tig0026425:34405-34424 | Msa1429010:CDS | 35.0% | |
| ATATGGTACATCAAAGGGTT+TGG | - | tig0026425:34410-34429 | Msa1429010:CDS | 35.0% | |
| TAACACATTGTTGCCAATCA+TGG | - | tig0026425:32917-32936 | Msa1429010:three_prime_UTR | 35.0% | |
| TAGAAATAAGCATAAGGAGC+AGG | + | tig0026425:32973-32992 | None:intergenic | 35.0% | |
| TCATTGAACTCTTCGAATCA+TGG | - | tig0026425:33063-33082 | Msa1429010:exon | 35.0% | |
| ACTTGTTCTTGAACTCTTGA+TGG | + | tig0026425:33235-33254 | None:intergenic | 35.0% | |
| GAGTTCAAGAACAAGTATCT+TGG | - | tig0026425:33239-33258 | Msa1429010:CDS | 35.0% | |
| !! | TAAAGGTTGACTTGTCTCAA+AGG | - | tig0026425:33264-33283 | Msa1429010:CDS | 35.0% |
| ATAAGTGAATTCCTCTTCTG+AGG | + | tig0026425:33297-33316 | None:intergenic | 35.0% | |
| ATTTGCCTAAGTCAGTTGAT+TGG | - | tig0026425:33327-33346 | Msa1429010:intron | 35.0% | |
| ! | TTTCTCCAATCAACTGACTT+AGG | + | tig0026425:33335-33354 | None:intergenic | 35.0% |
| TCAGTTGATTGGAGAAAGAA+AGG | - | tig0026425:33338-33357 | Msa1429010:intron | 35.0% | |
| GGAATAAACCAAATTGTGAC+AGG | - | tig0026425:33820-33839 | Msa1429010:CDS | 35.0% | |
| TCAAATTCCCTGTCACAATT+TGG | + | tig0026425:33831-33850 | None:intergenic | 35.0% | |
| ACTTACAACAATGGTTGCAA+TGG | - | tig0026425:33889-33908 | Msa1429010:intron | 35.0% | |
| CTTACAACAATGGTTGCAAT+GGG | - | tig0026425:33890-33909 | Msa1429010:intron | 35.0% | |
| TTACAACAATGGTTGCAATG+GGG | - | tig0026425:33891-33910 | Msa1429010:intron | 35.0% | |
| TCCTTCATTGTAAAAAACGG+TGG | - | tig0026425:33934-33953 | Msa1429010:intron | 35.0% | |
| !!! | TCCACCGTTTTTTACAATGA+AGG | + | tig0026425:33938-33957 | None:intergenic | 35.0% |
| !! | TTTCATTGGTTTGTTTCACC+AGG | - | tig0026425:34098-34117 | Msa1429010:intron | 35.0% |
| AGAGATTTCCAGTTCTATAG+TGG | - | tig0026425:34237-34256 | Msa1429010:intron | 35.0% | |
| AACATACTCCACTATAGAAC+TGG | + | tig0026425:34248-34267 | None:intergenic | 35.0% | |
| CTTTGATGTACCATATCCAA+CGG | + | tig0026425:34406-34425 | None:intergenic | 35.0% | |
| GTTGGATATGGTACATCAAA+GGG | - | tig0026425:34405-34424 | Msa1429010:CDS | 35.0% | |
| ATATGGTACATCAAAGGGTT+TGG | - | tig0026425:34410-34429 | Msa1429010:CDS | 35.0% | |
| GAGTTCAATGAGCTTATCCA+TGG | + | tig0026425:33054-33073 | None:intergenic | 40.0% | |
| GAATCATGGATATCGAGACA+CGG | - | tig0026425:33077-33096 | Msa1429010:exon | 40.0% | |
| ! | CCTGAGTAGCTTTTCTTCAA+TGG | + | tig0026425:33117-33136 | None:intergenic | 40.0% |
| CCATTGAAGAAAAGCTACTC+AGG | - | tig0026425:33114-33133 | Msa1429010:CDS | 40.0% | |
| ! | GCACATTGATGATAGGAACA+AGG | - | tig0026425:33163-33182 | Msa1429010:CDS | 40.0% |
| GAACAAGTATCTTGGGCTAA+AGG | - | tig0026425:33247-33266 | Msa1429010:CDS | 40.0% | |
| ATTGACCTTGATTCTTGACC+GGG | + | tig0026425:33373-33392 | None:intergenic | 40.0% | |
| CATTGACCTTGATTCTTGAC+CGG | + | tig0026425:33374-33393 | None:intergenic | 40.0% | |
| GTCAAGAATCAAGGTCAATG+TGG | - | tig0026425:33374-33393 | Msa1429010:intron | 40.0% | |
| AGCTTGCAAGCATATTGACA+TGG | - | tig0026425:33735-33754 | Msa1429010:CDS | 40.0% | |
| TTGCAAGCATATTGACATGG+TGG | - | tig0026425:33738-33757 | Msa1429010:CDS | 40.0% | |
| TTGGTTTATTCCTTCAACCG+CGG | + | tig0026425:33812-33831 | None:intergenic | 40.0% | |
| TGCGACACAACTTACAACAA+TGG | - | tig0026425:33880-33899 | Msa1429010:intron | 40.0% | |
| TACAACAATGGTTGCAATGG+GGG | - | tig0026425:33892-33911 | Msa1429010:intron | 40.0% | |
| !! | AAACGGTGGACTACATAAAG+AGG | - | tig0026425:33948-33967 | Msa1429010:intron | 40.0% |
| GTGCTTTCCTCCATAATGTA+AGG | + | tig0026425:33982-34001 | None:intergenic | 40.0% | |
| AAGCACTTGCGAGATGAAAA+AGG | - | tig0026425:33996-34015 | Msa1429010:intron | 40.0% | |
| TCACAACATCAGTTACTTCC+TGG | + | tig0026425:34119-34138 | None:intergenic | 40.0% | |
| CATCAAACACACCCTACAAA+TGG | + | tig0026425:34347-34366 | None:intergenic | 40.0% | |
| CATTTGTAGGGTGTGTTTGA+TGG | - | tig0026425:34345-34364 | Msa1429010:CDS | 40.0% | |
| CGTTGGATATGGTACATCAA+AGG | - | tig0026425:34404-34423 | Msa1429010:CDS | 40.0% | |
| AGAAACATTGGAAAGTCCGA+AGG | - | tig0026425:34498-34517 | Msa1429010:CDS | 40.0% | |
| GAAACATTGGAAAGTCCGAA+GGG | - | tig0026425:34499-34518 | Msa1429010:CDS | 40.0% | |
| GATTTGTGGACTCTACAAGA+TGG | - | tig0026425:34521-34540 | Msa1429010:CDS | 40.0% | |
| GAGTTCAATGAGCTTATCCA+TGG | + | tig0026425:33054-33073 | None:intergenic | 40.0% | |
| GAATCATGGATATCGAGACA+CGG | - | tig0026425:33077-33096 | Msa1429010:exon | 40.0% | |
| ! | CCTGAGTAGCTTTTCTTCAA+TGG | + | tig0026425:33117-33136 | None:intergenic | 40.0% |
| CCATTGAAGAAAAGCTACTC+AGG | - | tig0026425:33114-33133 | Msa1429010:CDS | 40.0% | |
| ! | GCACATTGATGATAGGAACA+AGG | - | tig0026425:33163-33182 | Msa1429010:CDS | 40.0% |
| GAACAAGTATCTTGGGCTAA+AGG | - | tig0026425:33247-33266 | Msa1429010:CDS | 40.0% | |
| ATTGACCTTGATTCTTGACC+GGG | + | tig0026425:33373-33392 | None:intergenic | 40.0% | |
| CATTGACCTTGATTCTTGAC+CGG | + | tig0026425:33374-33393 | None:intergenic | 40.0% | |
| GTCAAGAATCAAGGTCAATG+TGG | - | tig0026425:33374-33393 | Msa1429010:intron | 40.0% | |
| AGCTTGCAAGCATATTGACA+TGG | - | tig0026425:33735-33754 | Msa1429010:CDS | 40.0% | |
| TTGCAAGCATATTGACATGG+TGG | - | tig0026425:33738-33757 | Msa1429010:CDS | 40.0% | |
| TTGGTTTATTCCTTCAACCG+CGG | + | tig0026425:33812-33831 | None:intergenic | 40.0% | |
| TGCGACACAACTTACAACAA+TGG | - | tig0026425:33880-33899 | Msa1429010:intron | 40.0% | |
| TACAACAATGGTTGCAATGG+GGG | - | tig0026425:33892-33911 | Msa1429010:intron | 40.0% | |
| !! | AAACGGTGGACTACATAAAG+AGG | - | tig0026425:33948-33967 | Msa1429010:intron | 40.0% |
| GTGCTTTCCTCCATAATGTA+AGG | + | tig0026425:33982-34001 | None:intergenic | 40.0% | |
| AAGCACTTGCGAGATGAAAA+AGG | - | tig0026425:33996-34015 | Msa1429010:intron | 40.0% | |
| TCACAACATCAGTTACTTCC+TGG | + | tig0026425:34119-34138 | None:intergenic | 40.0% | |
| CATCAAACACACCCTACAAA+TGG | + | tig0026425:34347-34366 | None:intergenic | 40.0% | |
| CATTTGTAGGGTGTGTTTGA+TGG | - | tig0026425:34345-34364 | Msa1429010:CDS | 40.0% | |
| CGTTGGATATGGTACATCAA+AGG | - | tig0026425:34404-34423 | Msa1429010:CDS | 40.0% | |
| AGAAACATTGGAAAGTCCGA+AGG | - | tig0026425:34498-34517 | Msa1429010:CDS | 40.0% | |
| GAAACATTGGAAAGTCCGAA+GGG | - | tig0026425:34499-34518 | Msa1429010:CDS | 40.0% | |
| GATTTGTGGACTCTACAAGA+TGG | - | tig0026425:34521-34540 | Msa1429010:CDS | 40.0% | |
| GGGGAGAAAAAAGCCATGAT+TGG | + | tig0026425:32933-32952 | None:intergenic | 45.0% | |
| ! | AGGTCAGGACAAGTGTTTTG+GGG | + | tig0026425:32953-32972 | None:intergenic | 45.0% |
| ! | CAGGTCAGGACAAGTGTTTT+GGG | + | tig0026425:32954-32973 | None:intergenic | 45.0% |
| ATAAGCATAAGGAGCAGGTC+AGG | + | tig0026425:32968-32987 | None:intergenic | 45.0% | |
| AGAAAAGCTACTCAGGTTCG+AGG | - | tig0026425:33121-33140 | Msa1429010:CDS | 45.0% | |
| ACTCAGGTTCGAGGTCTTTA+AGG | - | tig0026425:33130-33149 | Msa1429010:CDS | 45.0% | |
| ACAAGGTTGTCAGCAACTAC+TGG | - | tig0026425:33180-33199 | Msa1429010:CDS | 45.0% | |
| !! | AAAGAAAGGTGCTGTAACCC+CGG | - | tig0026425:33352-33371 | Msa1429010:intron | 45.0% |
| TTGACCTTGATTCTTGACCG+GGG | + | tig0026425:33372-33391 | None:intergenic | 45.0% | |
| GTATGAACACGAGTACTTGC+AGG | - | tig0026425:33760-33779 | Msa1429010:CDS | 45.0% | |
| AGTACTTGCAGGTAGTTGCT+GGG | - | tig0026425:33771-33790 | Msa1429010:CDS | 45.0% | |
| ! | GGTGTGTTTGATGGACATTG+CGG | - | tig0026425:34354-34373 | Msa1429010:CDS | 45.0% |
| TGCGGAAGTGAACTAGATCA+TGG | - | tig0026425:34372-34391 | Msa1429010:CDS | 45.0% | |
| AGAATTCATGGGGAGCAAAG+TGG | - | tig0026425:34448-34467 | Msa1429010:CDS | 45.0% | |
| GAATTCATGGGGAGCAAAGT+GGG | - | tig0026425:34449-34468 | Msa1429010:CDS | 45.0% | |
| AATTCATGGGGAGCAAAGTG+GGG | - | tig0026425:34450-34469 | Msa1429010:CDS | 45.0% | |
| GGGGTGAGAAAGGGTTTATA+AGG | - | tig0026425:34469-34488 | Msa1429010:CDS | 45.0% | |
| GTAGAGTCCACAAATCCCTT+CGG | + | tig0026425:34517-34536 | None:intergenic | 45.0% | |
| GGGGAGAAAAAAGCCATGAT+TGG | + | tig0026425:32933-32952 | None:intergenic | 45.0% | |
| ! | AGGTCAGGACAAGTGTTTTG+GGG | + | tig0026425:32953-32972 | None:intergenic | 45.0% |
| ! | CAGGTCAGGACAAGTGTTTT+GGG | + | tig0026425:32954-32973 | None:intergenic | 45.0% |
| ATAAGCATAAGGAGCAGGTC+AGG | + | tig0026425:32968-32987 | None:intergenic | 45.0% | |
| AGAAAAGCTACTCAGGTTCG+AGG | - | tig0026425:33121-33140 | Msa1429010:CDS | 45.0% | |
| ACTCAGGTTCGAGGTCTTTA+AGG | - | tig0026425:33130-33149 | Msa1429010:CDS | 45.0% | |
| ACAAGGTTGTCAGCAACTAC+TGG | - | tig0026425:33180-33199 | Msa1429010:CDS | 45.0% | |
| !! | AAAGAAAGGTGCTGTAACCC+CGG | - | tig0026425:33352-33371 | Msa1429010:intron | 45.0% |
| TTGACCTTGATTCTTGACCG+GGG | + | tig0026425:33372-33391 | None:intergenic | 45.0% | |
| GTATGAACACGAGTACTTGC+AGG | - | tig0026425:33760-33779 | Msa1429010:CDS | 45.0% | |
| AGTACTTGCAGGTAGTTGCT+GGG | - | tig0026425:33771-33790 | Msa1429010:CDS | 45.0% | |
| ! | GGTGTGTTTGATGGACATTG+CGG | - | tig0026425:34354-34373 | Msa1429010:CDS | 45.0% |
| TGCGGAAGTGAACTAGATCA+TGG | - | tig0026425:34372-34391 | Msa1429010:CDS | 45.0% | |
| AGAATTCATGGGGAGCAAAG+TGG | - | tig0026425:34448-34467 | Msa1429010:CDS | 45.0% | |
| GAATTCATGGGGAGCAAAGT+GGG | - | tig0026425:34449-34468 | Msa1429010:CDS | 45.0% | |
| AATTCATGGGGAGCAAAGTG+GGG | - | tig0026425:34450-34469 | Msa1429010:CDS | 45.0% | |
| GGGGTGAGAAAGGGTTTATA+AGG | - | tig0026425:34469-34488 | Msa1429010:CDS | 45.0% | |
| GTAGAGTCCACAAATCCCTT+CGG | + | tig0026425:34517-34536 | None:intergenic | 45.0% | |
| !! | GGTCAGGACAAGTGTTTTGG+GGG | + | tig0026425:32952-32971 | None:intergenic | 50.0% |
| ! | GCAGGTCAGGACAAGTGTTT+TGG | + | tig0026425:32955-32974 | None:intergenic | 50.0% |
| TGGACGTGATTTCTCCATCG+TGG | - | tig0026425:33004-33023 | Msa1429010:three_prime_UTR | 50.0% | |
| GGACGTGATTTCTCCATCGT+GGG | - | tig0026425:33005-33024 | Msa1429010:three_prime_UTR | 50.0% | |
| ACCAGAGGACTTGAAGTCCA+TGG | - | tig0026425:33034-33053 | Msa1429010:three_prime_UTR | 50.0% | |
| TCCATGGACTTCAAGTCCTC+TGG | + | tig0026425:33038-33057 | None:intergenic | 50.0% | |
| ! | GTTGTCAGCAACTACTGGCT+TGG | - | tig0026425:33185-33204 | Msa1429010:CDS | 50.0% |
| AAGGAGAGAGTCCTCAGAAG+AGG | - | tig0026425:33283-33302 | Msa1429010:intron | 50.0% | |
| GTAACCCCGGTCAAGAATCA+AGG | - | tig0026425:33365-33384 | Msa1429010:intron | 50.0% | |
| !! | TGCATCGACTATGTGGATGC+GGG | + | tig0026425:33451-33470 | None:intergenic | 50.0% |
| !! | GTGCATCGACTATGTGGATG+CGG | + | tig0026425:33452-33471 | None:intergenic | 50.0% |
| CATCCACATAGTCGATGCAC+TGG | - | tig0026425:33452-33471 | Msa1429010:CDS | 50.0% | |
| !! | GAACCAGTGCATCGACTATG+TGG | + | tig0026425:33458-33477 | None:intergenic | 50.0% |
| GAGTACTTGCAGGTAGTTGC+TGG | - | tig0026425:33770-33789 | Msa1429010:CDS | 50.0% | |
| ! | GGCATTTTCAACTGTTGCCG+CGG | - | tig0026425:33792-33811 | Msa1429010:CDS | 50.0% |
| TGGTTGCAATGGGGGTCTAA+TGG | - | tig0026425:33900-33919 | Msa1429010:intron | 50.0% | |
| ATCTCTGCCTGAAGCCTCTA+TGG | + | tig0026425:34223-34242 | None:intergenic | 50.0% | |
| GAGCAAAGTGGGGTGAGAAA+GGG | - | tig0026425:34460-34479 | Msa1429010:CDS | 50.0% | |
| GGAAAGTCCGAAGGGATTTG+TGG | - | tig0026425:34507-34526 | Msa1429010:CDS | 50.0% | |
| !! | GGTCAGGACAAGTGTTTTGG+GGG | + | tig0026425:32952-32971 | None:intergenic | 50.0% |
| ! | GCAGGTCAGGACAAGTGTTT+TGG | + | tig0026425:32955-32974 | None:intergenic | 50.0% |
| TGGACGTGATTTCTCCATCG+TGG | - | tig0026425:33004-33023 | Msa1429010:three_prime_UTR | 50.0% | |
| GGACGTGATTTCTCCATCGT+GGG | - | tig0026425:33005-33024 | Msa1429010:three_prime_UTR | 50.0% | |
| ACCAGAGGACTTGAAGTCCA+TGG | - | tig0026425:33034-33053 | Msa1429010:three_prime_UTR | 50.0% | |
| TCCATGGACTTCAAGTCCTC+TGG | + | tig0026425:33038-33057 | None:intergenic | 50.0% | |
| ! | GTTGTCAGCAACTACTGGCT+TGG | - | tig0026425:33185-33204 | Msa1429010:CDS | 50.0% |
| AAGGAGAGAGTCCTCAGAAG+AGG | - | tig0026425:33283-33302 | Msa1429010:intron | 50.0% | |
| GTAACCCCGGTCAAGAATCA+AGG | - | tig0026425:33365-33384 | Msa1429010:intron | 50.0% | |
| !! | TGCATCGACTATGTGGATGC+GGG | + | tig0026425:33451-33470 | None:intergenic | 50.0% |
| !! | GTGCATCGACTATGTGGATG+CGG | + | tig0026425:33452-33471 | None:intergenic | 50.0% |
| CATCCACATAGTCGATGCAC+TGG | - | tig0026425:33452-33471 | Msa1429010:CDS | 50.0% | |
| !! | GAACCAGTGCATCGACTATG+TGG | + | tig0026425:33458-33477 | None:intergenic | 50.0% |
| GAGTACTTGCAGGTAGTTGC+TGG | - | tig0026425:33770-33789 | Msa1429010:CDS | 50.0% | |
| ! | GGCATTTTCAACTGTTGCCG+CGG | - | tig0026425:33792-33811 | Msa1429010:CDS | 50.0% |
| TGGTTGCAATGGGGGTCTAA+TGG | - | tig0026425:33900-33919 | Msa1429010:intron | 50.0% | |
| ATCTCTGCCTGAAGCCTCTA+TGG | + | tig0026425:34223-34242 | None:intergenic | 50.0% | |
| GAGCAAAGTGGGGTGAGAAA+GGG | - | tig0026425:34460-34479 | Msa1429010:CDS | 50.0% | |
| GGAAAGTCCGAAGGGATTTG+TGG | - | tig0026425:34507-34526 | Msa1429010:CDS | 50.0% | |
| CTCTGGTGAATAGCCCACGA+TGG | + | tig0026425:33021-33040 | None:intergenic | 55.0% | |
| ! | CATCGTGGGCTATTCACCAG+AGG | - | tig0026425:33019-33038 | Msa1429010:three_prime_UTR | 55.0% |
| !! | GCATCGACTATGTGGATGCG+GGG | + | tig0026425:33450-33469 | None:intergenic | 55.0% |
| TCAACTGTTGCCGCGGTTGA+AGG | - | tig0026425:33799-33818 | Msa1429010:CDS | 55.0% | |
| TGCCAACCAACCACTCAGTG+TGG | - | tig0026425:34197-34216 | Msa1429010:intron | 55.0% | |
| CTATGGCCACACTGAGTGGT+TGG | + | tig0026425:34206-34225 | None:intergenic | 55.0% | |
| ACCACTCAGTGTGGCCATAG+AGG | - | tig0026425:34206-34225 | Msa1429010:intron | 55.0% | |
| AGTGTGGCCATAGAGGCTTC+AGG | - | tig0026425:34213-34232 | Msa1429010:intron | 55.0% | |
| GATCATGGTGTGTCAGCCGT+TGG | - | tig0026425:34387-34406 | Msa1429010:CDS | 55.0% | |
| GGTGTGTCAGCCGTTGGATA+TGG | - | tig0026425:34393-34412 | Msa1429010:CDS | 55.0% | |
| GGAGCAAAGTGGGGTGAGAA+AGG | - | tig0026425:34459-34478 | Msa1429010:CDS | 55.0% | |
| CTCTGGTGAATAGCCCACGA+TGG | + | tig0026425:33021-33040 | None:intergenic | 55.0% | |
| ! | CATCGTGGGCTATTCACCAG+AGG | - | tig0026425:33019-33038 | Msa1429010:three_prime_UTR | 55.0% |
| !! | GCATCGACTATGTGGATGCG+GGG | + | tig0026425:33450-33469 | None:intergenic | 55.0% |
| TCAACTGTTGCCGCGGTTGA+AGG | - | tig0026425:33799-33818 | Msa1429010:CDS | 55.0% | |
| TGCCAACCAACCACTCAGTG+TGG | - | tig0026425:34197-34216 | Msa1429010:intron | 55.0% | |
| CTATGGCCACACTGAGTGGT+TGG | + | tig0026425:34206-34225 | None:intergenic | 55.0% | |
| ACCACTCAGTGTGGCCATAG+AGG | - | tig0026425:34206-34225 | Msa1429010:intron | 55.0% | |
| AGTGTGGCCATAGAGGCTTC+AGG | - | tig0026425:34213-34232 | Msa1429010:intron | 55.0% | |
| GATCATGGTGTGTCAGCCGT+TGG | - | tig0026425:34387-34406 | Msa1429010:CDS | 55.0% | |
| GGTGTGTCAGCCGTTGGATA+TGG | - | tig0026425:34393-34412 | Msa1429010:CDS | 55.0% | |
| GGAGCAAAGTGGGGTGAGAA+AGG | - | tig0026425:34459-34478 | Msa1429010:CDS | 55.0% | |
| GGCCACACTGAGTGGTTGGT+TGG | + | tig0026425:34202-34221 | None:intergenic | 60.0% | |
| GCCTCTATGGCCACACTGAG+TGG | + | tig0026425:34210-34229 | None:intergenic | 60.0% | |
| GGCCACACTGAGTGGTTGGT+TGG | + | tig0026425:34202-34221 | None:intergenic | 60.0% | |
| GCCTCTATGGCCACACTGAG+TGG | + | tig0026425:34210-34229 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026425 | gene | 32867 | 34782 | 32867 | ID=Msa1429010;Name=Msa1429010 |
| tig0026425 | mRNA | 32867 | 34782 | 32867 | ID=Msa1429010-mRNA-1;Parent=Msa1429010;Name=Msa1429010-mRNA-1;_AED=0.08;_eAED=0.08;_QI=69|1|1|1|1|1|4|213|350 |
| tig0026425 | exon | 32867 | 33295 | 32867 | ID=Msa1429010-mRNA-1:exon:6268;Parent=Msa1429010-mRNA-1 |
| tig0026425 | exon | 33389 | 33529 | 33389 | ID=Msa1429010-mRNA-1:exon:6267;Parent=Msa1429010-mRNA-1 |
| tig0026425 | exon | 33632 | 33867 | 33632 | ID=Msa1429010-mRNA-1:exon:6266;Parent=Msa1429010-mRNA-1 |
| tig0026425 | exon | 34254 | 34782 | 34254 | ID=Msa1429010-mRNA-1:exon:6265;Parent=Msa1429010-mRNA-1 |
| tig0026425 | five_prime_UTR | 34714 | 34782 | 34714 | ID=Msa1429010-mRNA-1:five_prime_utr;Parent=Msa1429010-mRNA-1 |
| tig0026425 | CDS | 34254 | 34713 | 34254 | ID=Msa1429010-mRNA-1:cds;Parent=Msa1429010-mRNA-1 |
| tig0026425 | CDS | 33632 | 33867 | 33632 | ID=Msa1429010-mRNA-1:cds;Parent=Msa1429010-mRNA-1 |
| tig0026425 | CDS | 33389 | 33529 | 33389 | ID=Msa1429010-mRNA-1:cds;Parent=Msa1429010-mRNA-1 |
| tig0026425 | CDS | 33080 | 33295 | 33080 | ID=Msa1429010-mRNA-1:cds;Parent=Msa1429010-mRNA-1 |
| tig0026425 | three_prime_UTR | 32867 | 33079 | 32867 | ID=Msa1429010-mRNA-1:three_prime_utr;Parent=Msa1429010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
