AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1369030

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369030 MtrunA17_Chr3g0144281 99.143 350 3 0 1 350 1 350 0.0 721
Msa1369030 MtrunA17_Chr1g0208261 57.100 331 135 5 26 349 67 397 4.18e-133 389
Msa1369030 MtrunA17_Chr3g0134231 52.260 354 155 7 9 349 11 363 3.25e-123 363
Msa1369030 MtrunA17_Chr4g0058081 53.161 348 151 7 7 349 5 345 1.22e-122 357
Msa1369030 MtrunA17_Chr3g0116551 51.862 349 157 5 5 348 3 345 1.43e-122 357
Msa1369030 MtrunA17_Chr4g0053311 49.128 344 164 4 11 348 4 342 3.22e-120 351
Msa1369030 MtrunA17_Chr4g0041061 51.156 346 154 7 9 347 7 344 1.53e-119 348
Msa1369030 MtrunA17_Chr4g0041081 53.526 312 134 5 43 347 37 344 2.22e-119 348
Msa1369030 MtrunA17_Chr4g0024411 54.921 315 130 6 41 347 32 342 5.66e-119 347
Msa1369030 MtrunA17_Chr4g0040881 53.145 318 138 5 37 347 31 344 9.16e-119 347
Msa1369030 MtrunA17_Chr4g0041481 55.663 309 128 6 43 347 36 339 7.14e-117 342
Msa1369030 MtrunA17_Chr5g0405751 54.984 311 128 6 45 347 37 343 8.34e-117 342
Msa1369030 MtrunA17_Chr4g0060251 53.481 316 135 6 40 347 33 344 5.68e-116 340
Msa1369030 MtrunA17_Chr1g0153011 48.179 357 154 6 4 348 6 343 8.42e-116 343
Msa1369030 MtrunA17_Chr4g0041521 55.016 309 130 6 43 347 36 339 2.33e-114 335
Msa1369030 MtrunA17_Chr3g0142071 53.074 309 140 3 45 348 48 356 2.64e-112 334
Msa1369030 MtrunA17_Chr2g0315491 53.822 314 132 6 41 347 33 340 6.30e-110 324
Msa1369030 MtrunA17_Chr4g0040851 51.438 313 143 4 36 346 53 358 2.51e-109 323
Msa1369030 MtrunA17_Chr2g0283901 48.837 344 166 6 13 349 17 357 7.81e-109 327
Msa1369030 MtrunA17_Chr2g0319991 49.521 313 150 5 42 346 30 342 1.62e-105 313
Msa1369030 MtrunA17_Chr4g0041471 51.133 309 135 6 48 346 38 340 1.94e-103 308
Msa1369030 MtrunA17_Chr2g0325121 49.175 303 149 3 47 348 39 337 8.29e-101 301
Msa1369030 MtrunA17_Chr7g0248391 47.249 309 148 8 43 346 38 336 6.98e-94 283
Msa1369030 MtrunA17_Chr7g0248811 46.753 308 152 7 43 346 35 334 1.92e-89 272
Msa1369030 MtrunA17_Chr2g0283741 40.057 352 194 11 9 348 13 359 9.60e-84 258
Msa1369030 MtrunA17_Chr8g0379151 40.833 360 193 12 1 348 22 373 1.26e-78 245
Msa1369030 MtrunA17_Chr0c27g0493921 41.042 307 166 9 47 347 51 348 1.23e-68 219
Msa1369030 MtrunA17_Chr2g0283671 50.000 228 109 5 120 346 3 226 9.89e-67 210
Msa1369030 MtrunA17_Chr4g0070441 41.275 298 160 9 47 338 51 339 8.41e-66 211
Msa1369030 MtrunA17_Chr1g0155781 39.683 315 165 8 47 344 51 357 4.57e-65 210
Msa1369030 MtrunA17_Chr4g0035551 38.413 315 168 9 47 344 48 353 3.51e-63 205
Msa1369030 MtrunA17_Chr2g0311381 39.237 367 183 15 7 349 2 352 1.76e-62 203
Msa1369030 MtrunA17_Chr2g0311471 41.667 312 163 10 48 345 37 343 4.86e-62 202
Msa1369030 MtrunA17_Chr1g0199131 36.571 350 192 8 17 344 22 363 1.01e-60 199
Msa1369030 MtrunA17_Chr2g0311391 37.209 344 163 13 48 347 37 371 1.11e-57 191
Msa1369030 MtrunA17_Chr2g0283751 39.858 281 151 11 9 278 13 286 1.89e-55 183
Msa1369030 MtrunA17_Chr1g0156161 41.494 241 131 8 110 345 26 261 2.75e-54 179
Msa1369030 MtrunA17_Chr4g0036731 37.183 355 163 13 7 344 6 317 5.23e-54 180
Msa1369030 MtrunA17_Chr4g0037291 35.655 359 167 13 7 344 47 362 9.64e-51 173
Msa1369030 MtrunA17_Chr4g0036281 35.294 357 171 13 7 344 6 321 4.67e-50 170
Msa1369030 MtrunA17_Chr7g0248421 43.204 206 96 5 98 302 15 200 1.42e-44 152
Msa1369030 MtrunA17_Chr7g0248371 56.122 98 41 2 250 346 34 130 5.19e-32 117
Msa1369030 MtrunA17_Chr2g0283661 27.778 306 157 8 43 347 29 271 1.54e-30 117
Msa1369030 MtrunA17_Chr2g0311091 42.000 150 72 3 48 182 35 184 6.23e-28 107
Msa1369030 MtrunA17_Chr1g0156771 49.505 101 47 3 132 229 55 154 4.50e-24 96.7
Msa1369030 MtrunA17_Chr7g0248661 56.757 74 31 1 274 346 2 75 2.21e-22 89.4
Msa1369030 MtrunA17_Chr7g0271041 27.839 273 162 12 94 339 66 330 1.45e-19 88.6
Msa1369030 MtrunA17_Chr7g0271031 26.571 350 218 16 19 339 35 374 4.35e-18 84.7
Msa1369030 MtrunA17_Chr8g0379671 31.008 129 80 4 173 300 23 143 5.69e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1369030 AT1G20850.1 77.439 328 72 2 25 350 29 356 0.0 530
Msa1369030 AT4G35350.1 69.014 355 105 2 1 350 1 355 0.0 529
Msa1369030 AT4G35350.2 66.901 284 89 2 1 279 1 284 1.85e-143 407
Msa1369030 AT5G43060.1 53.333 360 152 5 1 349 1 355 2.30e-129 378
Msa1369030 AT1G47128.1 52.101 357 158 5 1 348 1 353 3.51e-129 378
Msa1369030 AT5G50260.1 55.072 345 144 5 9 348 5 343 4.20e-129 374
Msa1369030 AT3G19390.1 54.070 344 149 6 8 348 9 346 8.73e-126 369
Msa1369030 AT3G48340.1 51.471 340 158 3 15 348 6 344 1.29e-118 347
Msa1369030 AT1G09850.1 53.074 309 144 1 41 348 26 334 6.54e-115 340
Msa1369030 AT4G36880.1 50.155 323 149 4 38 348 40 362 4.79e-112 331
Msa1369030 AT5G45890.1 48.974 341 159 7 17 347 10 345 2.47e-111 328
Msa1369030 AT3G19400.1 51.948 308 142 6 46 348 43 349 1.44e-108 322
Msa1369030 AT4G11310.1 47.175 354 174 6 5 348 3 353 7.14e-108 320
Msa1369030 AT4G11320.2 46.348 356 180 6 1 348 8 360 7.06e-107 318
Msa1369030 AT4G11320.1 46.348 356 180 6 1 348 8 360 7.06e-107 318
Msa1369030 AT1G06260.1 48.538 342 166 5 8 348 11 343 1.54e-106 316
Msa1369030 AT4G23520.1 44.729 351 190 4 1 348 1 350 6.97e-106 315
Msa1369030 AT3G48350.1 47.688 346 169 6 9 348 5 344 8.00e-106 315
Msa1369030 AT3G49340.1 48.232 311 150 6 44 346 32 339 9.95e-100 298
Msa1369030 AT2G27420.1 47.634 317 150 6 44 346 32 346 6.57e-98 294
Msa1369030 AT1G29090.1 47.771 314 153 6 43 347 43 354 5.43e-96 289
Msa1369030 AT2G34080.1 46.474 312 158 5 43 347 35 344 5.24e-95 286
Msa1369030 AT1G29080.1 42.566 343 183 9 15 347 7 345 6.26e-92 279
Msa1369030 AT3G43960.1 45.370 324 166 9 33 348 27 347 4.71e-86 265
Msa1369030 AT1G29110.1 37.647 340 190 6 17 347 7 333 1.24e-80 249
Msa1369030 AT3G19400.2 51.899 237 108 6 46 277 43 278 6.15e-77 238
Msa1369030 AT3G48350.2 45.161 279 142 5 9 282 5 277 8.12e-75 233
Msa1369030 AT5G60360.1 42.671 307 161 9 47 347 59 356 1.64e-74 234
Msa1369030 AT5G60360.2 42.345 307 161 10 47 347 59 355 6.64e-72 228
Msa1369030 AT5G60360.3 42.667 300 157 9 47 340 59 349 9.33e-72 228
Msa1369030 AT4G39090.1 39.940 333 171 9 29 344 37 357 2.84e-70 224
Msa1369030 AT2G21430.1 39.634 328 169 9 34 344 39 354 2.92e-69 221
Msa1369030 AT3G45310.1 40.717 307 167 9 47 347 59 356 2.91e-67 216
Msa1369030 AT3G45310.2 39.474 304 173 7 47 344 59 357 5.21e-65 210
Msa1369030 AT4G16190.1 39.241 316 167 8 47 344 55 363 3.63e-61 201
Msa1369030 AT3G54940.2 35.655 359 199 9 10 344 9 359 2.46e-60 198
Msa1369030 AT3G54940.3 34.201 269 162 4 10 264 9 276 9.76e-46 157
Msa1369030 AT4G01610.1 26.562 320 193 15 59 349 36 342 1.22e-16 80.5
Msa1369030 AT4G01610.2 26.250 320 194 15 59 349 36 342 1.79e-15 77.0

Find 97 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTCAGGTTCGAGGTCTTTA+AGG 0.183217 tig0018693:-6159 Msa1369030:CDS
AAGGAAATTATGAAATTTAA+TGG 0.188919 tig0018693:+4659 None:intergenic
ACTGATGTTGTGACTATTAA+TGG 0.222069 tig0018693:-5127 Msa1369030:CDS
CATTGCTTCAAAGGAAAATA+TGG 0.243961 tig0018693:+4594 None:intergenic
TCAAATTCCCTGTCACAATT+TGG 0.244699 tig0018693:+5425 None:intergenic
GCAGGTCAGGACAAGTGTTT+TGG 0.258810 tig0018693:+6337 None:intergenic
GGAAGATTATCCTTACATTA+TGG 0.312016 tig0018693:-5284 Msa1369030:CDS
ATCTCTGCCTGAAGCCTCTA+TGG 0.319266 tig0018693:+5033 None:intergenic
ACTTGTTCTTGAACTCTTGA+TGG 0.328420 tig0018693:+6057 None:intergenic
ATATGGTACATCAAAGGGTT+TGG 0.369364 tig0018693:-4843 Msa1369030:CDS
TTATTTCTATCTTTAGCATT+TGG 0.374681 tig0018693:-6305 Msa1369030:CDS
GCAACAATGTGTTATTGAAT+TGG 0.378685 tig0018693:+6381 None:intergenic
CATTTGTAGGGTGTGTTTGA+TGG 0.384261 tig0018693:-4908 Msa1369030:intron
AAGCACTTGCGAGATGAAAA+AGG 0.391386 tig0018693:-5257 Msa1369030:intron
GAGTACTTGCAGGTAGTTGC+TGG 0.397924 tig0018693:-5483 Msa1369030:intron
AACATACTCCACTATAGAAC+TGG 0.404978 tig0018693:+5008 None:intergenic
CATTGACCTTGATTCTTGAC+CGG 0.416938 tig0018693:+5918 None:intergenic
ACATTATAGTGAAGAATTCA+TGG 0.418831 tig0018693:-4817 Msa1369030:CDS
TTTCTCCAATCAACTGACTT+AGG 0.421540 tig0018693:+5957 None:intergenic
TCAACTGTTGCCGCGGTTGA+AGG 0.428053 tig0018693:-5454 Msa1369030:CDS
ATAAGCATAAGGAGCAGGTC+AGG 0.428907 tig0018693:+6324 None:intergenic
GGAGCAAAGTGGGGTGAGAA+AGG 0.429527 tig0018693:-4794 Msa1369030:CDS
ATTTGCCTAAGTCAGTTGAT+TGG 0.430861 tig0018693:-5962 Msa1369030:CDS
CTTACAACAATGGTTGCAAT+GGG 0.434061 tig0018693:-5363 Msa1369030:CDS
GGGGTGAGAAAGGGTTTATA+AGG 0.436382 tig0018693:-4784 Msa1369030:CDS
TAACACATTGTTGCCAATCA+TGG 0.437681 tig0018693:-6372 Msa1369030:exon
TTACAATAACATTGCTTCAA+AGG 0.446603 tig0018693:+4585 None:intergenic
GGTGTGTCAGCCGTTGGATA+TGG 0.454497 tig0018693:-4860 Msa1369030:CDS
AGTTCAAGAACAAGTATCTT+GGG 0.458742 tig0018693:-6049 Msa1369030:CDS
GAACAAGTATCTTGGGCTAA+AGG 0.462245 tig0018693:-6042 Msa1369030:CDS
GAGTTCAAGAACAAGTATCT+TGG 0.466462 tig0018693:-6050 Msa1369030:CDS
AGAGATTTCCAGTTCTATAG+TGG 0.466790 tig0018693:-5016 Msa1369030:CDS
GGAATAAACCAAATTGTGAC+AGG 0.467218 tig0018693:-5433 Msa1369030:CDS
TCATTGAACTCTTCGAATCA+TGG 0.479297 tig0018693:-6226 Msa1369030:CDS
GAATTCATGGGGAGCAAAGT+GGG 0.481502 tig0018693:-4804 Msa1369030:CDS
TCCATGGACTTCAAGTCCTC+TGG 0.486674 tig0018693:+6254 None:intergenic
TAATGAACAAAGCTTATTGA+AGG 0.491336 tig0018693:-5083 Msa1369030:CDS
GAGCAAAGTGGGGTGAGAAA+GGG 0.494121 tig0018693:-4793 Msa1369030:CDS
ATCTAAAGCACATTGATGAT+AGG 0.494574 tig0018693:-6133 Msa1369030:CDS
GTGCTTTCCTCCATAATGTA+AGG 0.494914 tig0018693:+5274 None:intergenic
TAGAAATAAGCATAAGGAGC+AGG 0.496949 tig0018693:+6319 None:intergenic
ACAAGGTTGTCAGCAACTAC+TGG 0.500291 tig0018693:-6109 Msa1369030:CDS
GGAAAGTCCGAAGGGATTTG+TGG 0.502529 tig0018693:-4746 Msa1369030:CDS
GAAGAGAAGAATATAAGAGA+AGG 0.502963 tig0018693:+6415 None:intergenic
GTTGTCAGCAACTACTGGCT+TGG 0.503373 tig0018693:-6104 Msa1369030:CDS
ATTGACCTTGATTCTTGACC+GGG 0.509041 tig0018693:+5919 None:intergenic
TCAGTTGATTGGAGAAAGAA+AGG 0.509647 tig0018693:-5951 Msa1369030:CDS
TAAAGATAGAAATAAGCATA+AGG 0.512917 tig0018693:+6313 None:intergenic
GTTGGATATGGTACATCAAA+GGG 0.516544 tig0018693:-4848 Msa1369030:CDS
CTATGGCCACACTGAGTGGT+TGG 0.516563 tig0018693:+5050 None:intergenic
AAGAGAAGAATATAAGAGAA+GGG 0.517194 tig0018693:+6416 None:intergenic
CGTTGGATATGGTACATCAA+AGG 0.524173 tig0018693:-4849 Msa1369030:CDS
ATAAGGATGAAGAGAAACAT+TGG 0.526478 tig0018693:-4767 Msa1369030:CDS
CATTATAGTGAAGAATTCAT+GGG 0.532840 tig0018693:-4816 Msa1369030:CDS
ACTTACAACAATGGTTGCAA+TGG 0.533682 tig0018693:-5364 Msa1369030:CDS
GGACGTGATTTCTCCATCGT+GGG 0.535021 tig0018693:-6284 Msa1369030:CDS
GTAGAGTCCACAAATCCCTT+CGG 0.538827 tig0018693:+4739 None:intergenic
TACAACAATGGTTGCAATGG+GGG 0.543003 tig0018693:-5361 Msa1369030:CDS
ACCACTCAGTGTGGCCATAG+AGG 0.545434 tig0018693:-5047 Msa1369030:CDS
AAAGAAAGGTGCTGTAACCC+CGG 0.549002 tig0018693:-5937 Msa1369030:CDS
TAAAGGTTGACTTGTCTCAA+AGG 0.550091 tig0018693:-6025 Msa1369030:CDS
GATCATGGTGTGTCAGCCGT+TGG 0.556769 tig0018693:-4866 Msa1369030:CDS
GTAACCCCGGTCAAGAATCA+AGG 0.557737 tig0018693:-5924 Msa1369030:CDS
AAACGGTGGACTACATAAAG+AGG 0.559559 tig0018693:-5305 Msa1369030:CDS
AGTGTGGCCATAGAGGCTTC+AGG 0.567247 tig0018693:-5040 Msa1369030:CDS
GAGTTCAATGAGCTTATCCA+TGG 0.571450 tig0018693:+6238 None:intergenic
ACCAGAGGACTTGAAGTCCA+TGG 0.576800 tig0018693:-6255 Msa1369030:CDS
TGGACGTGATTTCTCCATCG+TGG 0.576917 tig0018693:-6285 Msa1369030:CDS
AGAAACATTGGAAAGTCCGA+AGG 0.577636 tig0018693:-4755 Msa1369030:CDS
TGCGGAAGTGAACTAGATCA+TGG 0.579661 tig0018693:-4881 Msa1369030:CDS
CCATTGAAGAAAAGCTACTC+AGG 0.581738 tig0018693:-6175 Msa1369030:CDS
AGAAAAGCTACTCAGGTTCG+AGG 0.582875 tig0018693:-6168 Msa1369030:CDS
AAGGAGAGAGTCCTCAGAAG+AGG 0.591057 tig0018693:-6006 Msa1369030:CDS
CAAAGAAGAAATTAAGACAA+AGG 0.591687 tig0018693:+4640 None:intergenic
AGAATTCATGGGGAGCAAAG+TGG 0.591803 tig0018693:-4805 Msa1369030:CDS
GGCCACACTGAGTGGTTGGT+TGG 0.597846 tig0018693:+5054 None:intergenic
ATAAGTGAATTCCTCTTCTG+AGG 0.598495 tig0018693:+5995 None:intergenic
AGTACTTGCAGGTAGTTGCT+GGG 0.604719 tig0018693:-5482 Msa1369030:intron
GCCTCTATGGCCACACTGAG+TGG 0.610194 tig0018693:+5046 None:intergenic
TTGGTTTATTCCTTCAACCG+CGG 0.610274 tig0018693:+5444 None:intergenic
AGATTATCCTTACATTATGG+AGG 0.615877 tig0018693:-5281 Msa1369030:CDS
GATTTGTGGACTCTACAAGA+TGG 0.625513 tig0018693:-4732 Msa1369030:CDS
CTTTGATGTACCATATCCAA+CGG 0.626421 tig0018693:+4850 None:intergenic
TGCGACACAACTTACAACAA+TGG 0.635197 tig0018693:-5373 Msa1369030:CDS
GAATCATGGATGTCGAGACA+CGG 0.654814 tig0018693:-6212 Msa1369030:CDS
CTCTGGTGAATAGCCCACGA+TGG 0.663678 tig0018693:+6271 None:intergenic
ATTATAGTGAAGAATTCATG+GGG 0.665269 tig0018693:-4815 Msa1369030:CDS
GAAACATTGGAAAGTCCGAA+GGG 0.667328 tig0018693:-4754 Msa1369030:CDS
GCACATTGATGATAGGAACA+AGG 0.668624 tig0018693:-6126 Msa1369030:CDS
AATTCATGGGGAGCAAAGTG+GGG 0.670875 tig0018693:-4803 Msa1369030:CDS
TGCCAACCAACCACTCAGTG+TGG 0.678227 tig0018693:-5056 Msa1369030:CDS
CATCGTGGGCTATTCACCAG+AGG 0.679810 tig0018693:-6270 Msa1369030:CDS
GTCAAGAATCAAGGTCAATG+TGG 0.700857 tig0018693:-5915 Msa1369030:intron
GAATAAACCAAATTGTGACA+GGG 0.702620 tig0018693:-5432 Msa1369030:CDS
TTACAACAATGGTTGCAATG+GGG 0.703567 tig0018693:-5362 Msa1369030:CDS
TTGACCTTGATTCTTGACCG+GGG 0.717921 tig0018693:+5920 None:intergenic
GGTGTGTTTGATGGACATTG+CGG 0.757484 tig0018693:-4899 Msa1369030:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATATATACTATTGGATAA+CGG - tig0018693:5336-5355 Msa1369030:CDS 15.0%
!!! AAATCTTATTTCTTTTTAGT+GGG + tig0018693:6213-6232 None:intergenic 15.0%
!!! TAAATCTTATTTCTTTTTAG+TGG + tig0018693:6214-6233 None:intergenic 15.0%
!! AAGGAAATTATGAAATTTAA+TGG + tig0018693:6255-6274 None:intergenic 15.0%
!! TTATATATACTATTGGATAA+CGG - tig0018693:5336-5355 Msa1369030:CDS 15.0%
!!! AAATCTTATTTCTTTTTAGT+GGG + tig0018693:6213-6232 None:intergenic 15.0%
!!! TAAATCTTATTTCTTTTTAG+TGG + tig0018693:6214-6233 None:intergenic 15.0%
!! AAGGAAATTATGAAATTTAA+TGG + tig0018693:6255-6274 None:intergenic 15.0%
!! TAAAGATAGAAATAAGCATA+AGG + tig0018693:4601-4620 None:intergenic 20.0%
!!! TTATTTCTATCTTTAGCATT+TGG - tig0018693:4606-4625 Msa1369030:three_prime_UTR 20.0%
!! GTTCAGTTTATATATACTAT+TGG - tig0018693:5329-5348 Msa1369030:CDS 20.0%
!! ATAAGTAACATAACTTTCAT+TGG - tig0018693:5742-5761 Msa1369030:intron 20.0%
!! ATTATTTAACTACCATTTGT+AGG - tig0018693:5990-6009 Msa1369030:CDS 20.0%
!! TTATTTAACTACCATTTGTA+GGG - tig0018693:5991-6010 Msa1369030:CDS 20.0%
!! TAAAGATAGAAATAAGCATA+AGG + tig0018693:4601-4620 None:intergenic 20.0%
!!! TTATTTCTATCTTTAGCATT+TGG - tig0018693:4606-4625 Msa1369030:three_prime_UTR 20.0%
!! GTTCAGTTTATATATACTAT+TGG - tig0018693:5329-5348 Msa1369030:CDS 20.0%
!! ATAAGTAACATAACTTTCAT+TGG - tig0018693:5742-5761 Msa1369030:intron 20.0%
!! ATTATTTAACTACCATTTGT+AGG - tig0018693:5990-6009 Msa1369030:CDS 20.0%
!! TTATTTAACTACCATTTGTA+GGG - tig0018693:5991-6010 Msa1369030:CDS 20.0%
! AAGAGAAGAATATAAGAGAA+GGG + tig0018693:4498-4517 None:intergenic 25.0%
! ATCATTGAATTGATATCAGA+CGG + tig0018693:5193-5212 None:intergenic 25.0%
! TTCTCCTTCATTGTAAAAAA+CGG - tig0018693:5589-5608 Msa1369030:intron 25.0%
!!! AAGCTTTGTTCATTATTTTG+TGG + tig0018693:5823-5842 None:intergenic 25.0%
! TAATGAACAAAGCTTATTGA+AGG - tig0018693:5828-5847 Msa1369030:intron 25.0%
! ACATTATAGTGAAGAATTCA+TGG - tig0018693:6094-6113 Msa1369030:CDS 25.0%
! CATTATAGTGAAGAATTCAT+GGG - tig0018693:6095-6114 Msa1369030:CDS 25.0%
! ATTATAGTGAAGAATTCATG+GGG - tig0018693:6096-6115 Msa1369030:CDS 25.0%
! CAAAGAAGAAATTAAGACAA+AGG + tig0018693:6274-6293 None:intergenic 25.0%
! TTACAATAACATTGCTTCAA+AGG + tig0018693:6329-6348 None:intergenic 25.0%
! AAGAGAAGAATATAAGAGAA+GGG + tig0018693:4498-4517 None:intergenic 25.0%
! ATCATTGAATTGATATCAGA+CGG + tig0018693:5193-5212 None:intergenic 25.0%
! TTCTCCTTCATTGTAAAAAA+CGG - tig0018693:5589-5608 Msa1369030:intron 25.0%
!!! AAGCTTTGTTCATTATTTTG+TGG + tig0018693:5823-5842 None:intergenic 25.0%
! TAATGAACAAAGCTTATTGA+AGG - tig0018693:5828-5847 Msa1369030:intron 25.0%
! ACATTATAGTGAAGAATTCA+TGG - tig0018693:6094-6113 Msa1369030:CDS 25.0%
! CATTATAGTGAAGAATTCAT+GGG - tig0018693:6095-6114 Msa1369030:CDS 25.0%
! ATTATAGTGAAGAATTCATG+GGG - tig0018693:6096-6115 Msa1369030:CDS 25.0%
! CAAAGAAGAAATTAAGACAA+AGG + tig0018693:6274-6293 None:intergenic 25.0%
! TTACAATAACATTGCTTCAA+AGG + tig0018693:6329-6348 None:intergenic 25.0%
GAAGAGAAGAATATAAGAGA+AGG + tig0018693:4499-4518 None:intergenic 30.0%
! GCAACAATGTGTTATTGAAT+TGG + tig0018693:4533-4552 None:intergenic 30.0%
! ATCTAAAGCACATTGATGAT+AGG - tig0018693:4778-4797 Msa1369030:CDS 30.0%
AGTTCAAGAACAAGTATCTT+GGG - tig0018693:4862-4881 Msa1369030:CDS 30.0%
TAGGCATGTTTACATATAGT+AGG + tig0018693:5254-5273 None:intergenic 30.0%
AGCGAAAAATTTGCATGATT+AGG + tig0018693:5273-5292 None:intergenic 30.0%
GAATAAACCAAATTGTGACA+GGG - tig0018693:5479-5498 Msa1369030:intron 30.0%
GGAAGATTATCCTTACATTA+TGG - tig0018693:5627-5646 Msa1369030:intron 30.0%
AGATTATCCTTACATTATGG+AGG - tig0018693:5630-5649 Msa1369030:intron 30.0%
ACTGATGTTGTGACTATTAA+TGG - tig0018693:5784-5803 Msa1369030:intron 30.0%
TGGGTGAATCTAATCTTAAA+TGG - tig0018693:5953-5972 Msa1369030:CDS 30.0%
ATAAGGATGAAGAGAAACAT+TGG - tig0018693:6144-6163 Msa1369030:CDS 30.0%
CATTGCTTCAAAGGAAAATA+TGG + tig0018693:6320-6339 None:intergenic 30.0%
GAAGAGAAGAATATAAGAGA+AGG + tig0018693:4499-4518 None:intergenic 30.0%
! GCAACAATGTGTTATTGAAT+TGG + tig0018693:4533-4552 None:intergenic 30.0%
! ATCTAAAGCACATTGATGAT+AGG - tig0018693:4778-4797 Msa1369030:CDS 30.0%
AGTTCAAGAACAAGTATCTT+GGG - tig0018693:4862-4881 Msa1369030:CDS 30.0%
TAGGCATGTTTACATATAGT+AGG + tig0018693:5254-5273 None:intergenic 30.0%
AGCGAAAAATTTGCATGATT+AGG + tig0018693:5273-5292 None:intergenic 30.0%
GAATAAACCAAATTGTGACA+GGG - tig0018693:5479-5498 Msa1369030:intron 30.0%
GGAAGATTATCCTTACATTA+TGG - tig0018693:5627-5646 Msa1369030:intron 30.0%
AGATTATCCTTACATTATGG+AGG - tig0018693:5630-5649 Msa1369030:intron 30.0%
ACTGATGTTGTGACTATTAA+TGG - tig0018693:5784-5803 Msa1369030:intron 30.0%
TGGGTGAATCTAATCTTAAA+TGG - tig0018693:5953-5972 Msa1369030:CDS 30.0%
ATAAGGATGAAGAGAAACAT+TGG - tig0018693:6144-6163 Msa1369030:CDS 30.0%
CATTGCTTCAAAGGAAAATA+TGG + tig0018693:6320-6339 None:intergenic 30.0%
TAACACATTGTTGCCAATCA+TGG - tig0018693:4539-4558 Msa1369030:three_prime_UTR 35.0%
TAGAAATAAGCATAAGGAGC+AGG + tig0018693:4595-4614 None:intergenic 35.0%
TCATTGAACTCTTCGAATCA+TGG - tig0018693:4685-4704 Msa1369030:three_prime_UTR 35.0%
ACTTGTTCTTGAACTCTTGA+TGG + tig0018693:4857-4876 None:intergenic 35.0%
GAGTTCAAGAACAAGTATCT+TGG - tig0018693:4861-4880 Msa1369030:CDS 35.0%
!! TAAAGGTTGACTTGTCTCAA+AGG - tig0018693:4886-4905 Msa1369030:CDS 35.0%
ATAAGTGAATTCCTCTTCTG+AGG + tig0018693:4919-4938 None:intergenic 35.0%
ATTTGCCTAAGTCAGTTGAT+TGG - tig0018693:4949-4968 Msa1369030:intron 35.0%
! TTTCTCCAATCAACTGACTT+AGG + tig0018693:4957-4976 None:intergenic 35.0%
TCAGTTGATTGGAGAAAGAA+AGG - tig0018693:4960-4979 Msa1369030:intron 35.0%
GGAATAAACCAAATTGTGAC+AGG - tig0018693:5478-5497 Msa1369030:intron 35.0%
TCAAATTCCCTGTCACAATT+TGG + tig0018693:5489-5508 None:intergenic 35.0%
ACTTACAACAATGGTTGCAA+TGG - tig0018693:5547-5566 Msa1369030:intron 35.0%
CTTACAACAATGGTTGCAAT+GGG - tig0018693:5548-5567 Msa1369030:intron 35.0%
TTACAACAATGGTTGCAATG+GGG - tig0018693:5549-5568 Msa1369030:intron 35.0%
TCCTTCATTGTAAAAAACGG+TGG - tig0018693:5592-5611 Msa1369030:intron 35.0%
!!! TCCACCGTTTTTTACAATGA+AGG + tig0018693:5596-5615 None:intergenic 35.0%
!! TTTCATTGGTTTGTTTCACC+AGG - tig0018693:5756-5775 Msa1369030:intron 35.0%
AGAGATTTCCAGTTCTATAG+TGG - tig0018693:5895-5914 Msa1369030:intron 35.0%
AACATACTCCACTATAGAAC+TGG + tig0018693:5906-5925 None:intergenic 35.0%
CTTTGATGTACCATATCCAA+CGG + tig0018693:6064-6083 None:intergenic 35.0%
GTTGGATATGGTACATCAAA+GGG - tig0018693:6063-6082 Msa1369030:CDS 35.0%
ATATGGTACATCAAAGGGTT+TGG - tig0018693:6068-6087 Msa1369030:CDS 35.0%
TAACACATTGTTGCCAATCA+TGG - tig0018693:4539-4558 Msa1369030:three_prime_UTR 35.0%
TAGAAATAAGCATAAGGAGC+AGG + tig0018693:4595-4614 None:intergenic 35.0%
TCATTGAACTCTTCGAATCA+TGG - tig0018693:4685-4704 Msa1369030:three_prime_UTR 35.0%
ACTTGTTCTTGAACTCTTGA+TGG + tig0018693:4857-4876 None:intergenic 35.0%
GAGTTCAAGAACAAGTATCT+TGG - tig0018693:4861-4880 Msa1369030:CDS 35.0%
!! TAAAGGTTGACTTGTCTCAA+AGG - tig0018693:4886-4905 Msa1369030:CDS 35.0%
ATAAGTGAATTCCTCTTCTG+AGG + tig0018693:4919-4938 None:intergenic 35.0%
ATTTGCCTAAGTCAGTTGAT+TGG - tig0018693:4949-4968 Msa1369030:intron 35.0%
! TTTCTCCAATCAACTGACTT+AGG + tig0018693:4957-4976 None:intergenic 35.0%
TCAGTTGATTGGAGAAAGAA+AGG - tig0018693:4960-4979 Msa1369030:intron 35.0%
GGAATAAACCAAATTGTGAC+AGG - tig0018693:5478-5497 Msa1369030:intron 35.0%
TCAAATTCCCTGTCACAATT+TGG + tig0018693:5489-5508 None:intergenic 35.0%
ACTTACAACAATGGTTGCAA+TGG - tig0018693:5547-5566 Msa1369030:intron 35.0%
CTTACAACAATGGTTGCAAT+GGG - tig0018693:5548-5567 Msa1369030:intron 35.0%
TTACAACAATGGTTGCAATG+GGG - tig0018693:5549-5568 Msa1369030:intron 35.0%
TCCTTCATTGTAAAAAACGG+TGG - tig0018693:5592-5611 Msa1369030:intron 35.0%
!!! TCCACCGTTTTTTACAATGA+AGG + tig0018693:5596-5615 None:intergenic 35.0%
!! TTTCATTGGTTTGTTTCACC+AGG - tig0018693:5756-5775 Msa1369030:intron 35.0%
AGAGATTTCCAGTTCTATAG+TGG - tig0018693:5895-5914 Msa1369030:intron 35.0%
AACATACTCCACTATAGAAC+TGG + tig0018693:5906-5925 None:intergenic 35.0%
CTTTGATGTACCATATCCAA+CGG + tig0018693:6064-6083 None:intergenic 35.0%
GTTGGATATGGTACATCAAA+GGG - tig0018693:6063-6082 Msa1369030:CDS 35.0%
ATATGGTACATCAAAGGGTT+TGG - tig0018693:6068-6087 Msa1369030:CDS 35.0%
GAGTTCAATGAGCTTATCCA+TGG + tig0018693:4676-4695 None:intergenic 40.0%
! CCTGAGTAGCTTTTCTTCAA+TGG + tig0018693:4739-4758 None:intergenic 40.0%
CCATTGAAGAAAAGCTACTC+AGG - tig0018693:4736-4755 Msa1369030:CDS 40.0%
! GCACATTGATGATAGGAACA+AGG - tig0018693:4785-4804 Msa1369030:CDS 40.0%
GAACAAGTATCTTGGGCTAA+AGG - tig0018693:4869-4888 Msa1369030:CDS 40.0%
ATTGACCTTGATTCTTGACC+GGG + tig0018693:4995-5014 None:intergenic 40.0%
CATTGACCTTGATTCTTGAC+CGG + tig0018693:4996-5015 None:intergenic 40.0%
GTCAAGAATCAAGGTCAATG+TGG - tig0018693:4996-5015 Msa1369030:intron 40.0%
AGCTTGCAAGCATATTGACA+TGG - tig0018693:5393-5412 Msa1369030:CDS 40.0%
TTGCAAGCATATTGACATGG+TGG - tig0018693:5396-5415 Msa1369030:CDS 40.0%
TTGGTTTATTCCTTCAACCG+CGG + tig0018693:5470-5489 None:intergenic 40.0%
TGCGACACAACTTACAACAA+TGG - tig0018693:5538-5557 Msa1369030:intron 40.0%
TACAACAATGGTTGCAATGG+GGG - tig0018693:5550-5569 Msa1369030:intron 40.0%
!! AAACGGTGGACTACATAAAG+AGG - tig0018693:5606-5625 Msa1369030:intron 40.0%
GTGCTTTCCTCCATAATGTA+AGG + tig0018693:5640-5659 None:intergenic 40.0%
AAGCACTTGCGAGATGAAAA+AGG - tig0018693:5654-5673 Msa1369030:intron 40.0%
TCACAACATCAGTTACTTCC+TGG + tig0018693:5777-5796 None:intergenic 40.0%
CATCAAACACACCCTACAAA+TGG + tig0018693:6005-6024 None:intergenic 40.0%
CATTTGTAGGGTGTGTTTGA+TGG - tig0018693:6003-6022 Msa1369030:CDS 40.0%
CGTTGGATATGGTACATCAA+AGG - tig0018693:6062-6081 Msa1369030:CDS 40.0%
AGAAACATTGGAAAGTCCGA+AGG - tig0018693:6156-6175 Msa1369030:CDS 40.0%
GAAACATTGGAAAGTCCGAA+GGG - tig0018693:6157-6176 Msa1369030:CDS 40.0%
GATTTGTGGACTCTACAAGA+TGG - tig0018693:6179-6198 Msa1369030:CDS 40.0%
GAGTTCAATGAGCTTATCCA+TGG + tig0018693:4676-4695 None:intergenic 40.0%
! CCTGAGTAGCTTTTCTTCAA+TGG + tig0018693:4739-4758 None:intergenic 40.0%
CCATTGAAGAAAAGCTACTC+AGG - tig0018693:4736-4755 Msa1369030:CDS 40.0%
! GCACATTGATGATAGGAACA+AGG - tig0018693:4785-4804 Msa1369030:CDS 40.0%
GAACAAGTATCTTGGGCTAA+AGG - tig0018693:4869-4888 Msa1369030:CDS 40.0%
ATTGACCTTGATTCTTGACC+GGG + tig0018693:4995-5014 None:intergenic 40.0%
CATTGACCTTGATTCTTGAC+CGG + tig0018693:4996-5015 None:intergenic 40.0%
GTCAAGAATCAAGGTCAATG+TGG - tig0018693:4996-5015 Msa1369030:intron 40.0%
AGCTTGCAAGCATATTGACA+TGG - tig0018693:5393-5412 Msa1369030:CDS 40.0%
TTGCAAGCATATTGACATGG+TGG - tig0018693:5396-5415 Msa1369030:CDS 40.0%
TTGGTTTATTCCTTCAACCG+CGG + tig0018693:5470-5489 None:intergenic 40.0%
TGCGACACAACTTACAACAA+TGG - tig0018693:5538-5557 Msa1369030:intron 40.0%
TACAACAATGGTTGCAATGG+GGG - tig0018693:5550-5569 Msa1369030:intron 40.0%
!! AAACGGTGGACTACATAAAG+AGG - tig0018693:5606-5625 Msa1369030:intron 40.0%
GTGCTTTCCTCCATAATGTA+AGG + tig0018693:5640-5659 None:intergenic 40.0%
AAGCACTTGCGAGATGAAAA+AGG - tig0018693:5654-5673 Msa1369030:intron 40.0%
TCACAACATCAGTTACTTCC+TGG + tig0018693:5777-5796 None:intergenic 40.0%
CATCAAACACACCCTACAAA+TGG + tig0018693:6005-6024 None:intergenic 40.0%
CATTTGTAGGGTGTGTTTGA+TGG - tig0018693:6003-6022 Msa1369030:CDS 40.0%
CGTTGGATATGGTACATCAA+AGG - tig0018693:6062-6081 Msa1369030:CDS 40.0%
AGAAACATTGGAAAGTCCGA+AGG - tig0018693:6156-6175 Msa1369030:CDS 40.0%
GAAACATTGGAAAGTCCGAA+GGG - tig0018693:6157-6176 Msa1369030:CDS 40.0%
GATTTGTGGACTCTACAAGA+TGG - tig0018693:6179-6198 Msa1369030:CDS 40.0%
GGGGAGAAAAAAGCCATGAT+TGG + tig0018693:4555-4574 None:intergenic 45.0%
! AGGTCAGGACAAGTGTTTTG+GGG + tig0018693:4575-4594 None:intergenic 45.0%
! CAGGTCAGGACAAGTGTTTT+GGG + tig0018693:4576-4595 None:intergenic 45.0%
ATAAGCATAAGGAGCAGGTC+AGG + tig0018693:4590-4609 None:intergenic 45.0%
GAATCATGGATGTCGAGACA+CGG - tig0018693:4699-4718 Msa1369030:exon 45.0%
AGAAAAGCTACTCAGGTTCG+AGG - tig0018693:4743-4762 Msa1369030:CDS 45.0%
ACTCAGGTTCGAGGTCTTTA+AGG - tig0018693:4752-4771 Msa1369030:CDS 45.0%
ACAAGGTTGTCAGCAACTAC+TGG - tig0018693:4802-4821 Msa1369030:CDS 45.0%
!! AAAGAAAGGTGCTGTAACCC+CGG - tig0018693:4974-4993 Msa1369030:intron 45.0%
TTGACCTTGATTCTTGACCG+GGG + tig0018693:4994-5013 None:intergenic 45.0%
GTATGAACACGAGTACTTGC+AGG - tig0018693:5418-5437 Msa1369030:CDS 45.0%
AGTACTTGCAGGTAGTTGCT+GGG - tig0018693:5429-5448 Msa1369030:CDS 45.0%
! GGTGTGTTTGATGGACATTG+CGG - tig0018693:6012-6031 Msa1369030:CDS 45.0%
TGCGGAAGTGAACTAGATCA+TGG - tig0018693:6030-6049 Msa1369030:CDS 45.0%
AGAATTCATGGGGAGCAAAG+TGG - tig0018693:6106-6125 Msa1369030:CDS 45.0%
GAATTCATGGGGAGCAAAGT+GGG - tig0018693:6107-6126 Msa1369030:CDS 45.0%
AATTCATGGGGAGCAAAGTG+GGG - tig0018693:6108-6127 Msa1369030:CDS 45.0%
GGGGTGAGAAAGGGTTTATA+AGG - tig0018693:6127-6146 Msa1369030:CDS 45.0%
GTAGAGTCCACAAATCCCTT+CGG + tig0018693:6175-6194 None:intergenic 45.0%
GGGGAGAAAAAAGCCATGAT+TGG + tig0018693:4555-4574 None:intergenic 45.0%
! AGGTCAGGACAAGTGTTTTG+GGG + tig0018693:4575-4594 None:intergenic 45.0%
! CAGGTCAGGACAAGTGTTTT+GGG + tig0018693:4576-4595 None:intergenic 45.0%
ATAAGCATAAGGAGCAGGTC+AGG + tig0018693:4590-4609 None:intergenic 45.0%
GAATCATGGATGTCGAGACA+CGG - tig0018693:4699-4718 Msa1369030:exon 45.0%
AGAAAAGCTACTCAGGTTCG+AGG - tig0018693:4743-4762 Msa1369030:CDS 45.0%
ACTCAGGTTCGAGGTCTTTA+AGG - tig0018693:4752-4771 Msa1369030:CDS 45.0%
ACAAGGTTGTCAGCAACTAC+TGG - tig0018693:4802-4821 Msa1369030:CDS 45.0%
!! AAAGAAAGGTGCTGTAACCC+CGG - tig0018693:4974-4993 Msa1369030:intron 45.0%
TTGACCTTGATTCTTGACCG+GGG + tig0018693:4994-5013 None:intergenic 45.0%
GTATGAACACGAGTACTTGC+AGG - tig0018693:5418-5437 Msa1369030:CDS 45.0%
AGTACTTGCAGGTAGTTGCT+GGG - tig0018693:5429-5448 Msa1369030:CDS 45.0%
! GGTGTGTTTGATGGACATTG+CGG - tig0018693:6012-6031 Msa1369030:CDS 45.0%
TGCGGAAGTGAACTAGATCA+TGG - tig0018693:6030-6049 Msa1369030:CDS 45.0%
AGAATTCATGGGGAGCAAAG+TGG - tig0018693:6106-6125 Msa1369030:CDS 45.0%
GAATTCATGGGGAGCAAAGT+GGG - tig0018693:6107-6126 Msa1369030:CDS 45.0%
AATTCATGGGGAGCAAAGTG+GGG - tig0018693:6108-6127 Msa1369030:CDS 45.0%
GGGGTGAGAAAGGGTTTATA+AGG - tig0018693:6127-6146 Msa1369030:CDS 45.0%
GTAGAGTCCACAAATCCCTT+CGG + tig0018693:6175-6194 None:intergenic 45.0%
!!! TTAATTATTGTTTTTTTTAA+TGG - tig0018693:5933-5952 Msa1369030:CDS 5.0%
!!! TAATTATTGTTTTTTTTAAT+GGG - tig0018693:5934-5953 Msa1369030:CDS 5.0%
!!! TTAATTATTGTTTTTTTTAA+TGG - tig0018693:5933-5952 Msa1369030:CDS 5.0%
!!! TAATTATTGTTTTTTTTAAT+GGG - tig0018693:5934-5953 Msa1369030:CDS 5.0%
!! GGTCAGGACAAGTGTTTTGG+GGG + tig0018693:4574-4593 None:intergenic 50.0%
! GCAGGTCAGGACAAGTGTTT+TGG + tig0018693:4577-4596 None:intergenic 50.0%
TGGACGTGATTTCTCCATCG+TGG - tig0018693:4626-4645 Msa1369030:three_prime_UTR 50.0%
GGACGTGATTTCTCCATCGT+GGG - tig0018693:4627-4646 Msa1369030:three_prime_UTR 50.0%
ACCAGAGGACTTGAAGTCCA+TGG - tig0018693:4656-4675 Msa1369030:three_prime_UTR 50.0%
TCCATGGACTTCAAGTCCTC+TGG + tig0018693:4660-4679 None:intergenic 50.0%
! GTTGTCAGCAACTACTGGCT+TGG - tig0018693:4807-4826 Msa1369030:CDS 50.0%
AAGGAGAGAGTCCTCAGAAG+AGG - tig0018693:4905-4924 Msa1369030:intron 50.0%
GTAACCCCGGTCAAGAATCA+AGG - tig0018693:4987-5006 Msa1369030:intron 50.0%
!! TGCATCGACTATGTGGATGC+GGG + tig0018693:5073-5092 None:intergenic 50.0%
!! GTGCATCGACTATGTGGATG+CGG + tig0018693:5074-5093 None:intergenic 50.0%
CATCCACATAGTCGATGCAC+TGG - tig0018693:5074-5093 Msa1369030:CDS 50.0%
!! GAACCAGTGCATCGACTATG+TGG + tig0018693:5080-5099 None:intergenic 50.0%
GAGTACTTGCAGGTAGTTGC+TGG - tig0018693:5428-5447 Msa1369030:CDS 50.0%
! GGCATTTTCAACTGTTGCCG+CGG - tig0018693:5450-5469 Msa1369030:CDS 50.0%
TGGTTGCAATGGGGGTCTAA+TGG - tig0018693:5558-5577 Msa1369030:intron 50.0%
ATCTCTGCCTGAAGCCTCTA+TGG + tig0018693:5881-5900 None:intergenic 50.0%
GAGCAAAGTGGGGTGAGAAA+GGG - tig0018693:6118-6137 Msa1369030:CDS 50.0%
GGAAAGTCCGAAGGGATTTG+TGG - tig0018693:6165-6184 Msa1369030:CDS 50.0%
!! GGTCAGGACAAGTGTTTTGG+GGG + tig0018693:4574-4593 None:intergenic 50.0%
! GCAGGTCAGGACAAGTGTTT+TGG + tig0018693:4577-4596 None:intergenic 50.0%
TGGACGTGATTTCTCCATCG+TGG - tig0018693:4626-4645 Msa1369030:three_prime_UTR 50.0%
GGACGTGATTTCTCCATCGT+GGG - tig0018693:4627-4646 Msa1369030:three_prime_UTR 50.0%
ACCAGAGGACTTGAAGTCCA+TGG - tig0018693:4656-4675 Msa1369030:three_prime_UTR 50.0%
TCCATGGACTTCAAGTCCTC+TGG + tig0018693:4660-4679 None:intergenic 50.0%
! GTTGTCAGCAACTACTGGCT+TGG - tig0018693:4807-4826 Msa1369030:CDS 50.0%
AAGGAGAGAGTCCTCAGAAG+AGG - tig0018693:4905-4924 Msa1369030:intron 50.0%
GTAACCCCGGTCAAGAATCA+AGG - tig0018693:4987-5006 Msa1369030:intron 50.0%
!! TGCATCGACTATGTGGATGC+GGG + tig0018693:5073-5092 None:intergenic 50.0%
!! GTGCATCGACTATGTGGATG+CGG + tig0018693:5074-5093 None:intergenic 50.0%
CATCCACATAGTCGATGCAC+TGG - tig0018693:5074-5093 Msa1369030:CDS 50.0%
!! GAACCAGTGCATCGACTATG+TGG + tig0018693:5080-5099 None:intergenic 50.0%
GAGTACTTGCAGGTAGTTGC+TGG - tig0018693:5428-5447 Msa1369030:CDS 50.0%
! GGCATTTTCAACTGTTGCCG+CGG - tig0018693:5450-5469 Msa1369030:CDS 50.0%
TGGTTGCAATGGGGGTCTAA+TGG - tig0018693:5558-5577 Msa1369030:intron 50.0%
ATCTCTGCCTGAAGCCTCTA+TGG + tig0018693:5881-5900 None:intergenic 50.0%
GAGCAAAGTGGGGTGAGAAA+GGG - tig0018693:6118-6137 Msa1369030:CDS 50.0%
GGAAAGTCCGAAGGGATTTG+TGG - tig0018693:6165-6184 Msa1369030:CDS 50.0%
CTCTGGTGAATAGCCCACGA+TGG + tig0018693:4643-4662 None:intergenic 55.0%
! CATCGTGGGCTATTCACCAG+AGG - tig0018693:4641-4660 Msa1369030:three_prime_UTR 55.0%
!! GCATCGACTATGTGGATGCG+GGG + tig0018693:5072-5091 None:intergenic 55.0%
TCAACTGTTGCCGCGGTTGA+AGG - tig0018693:5457-5476 Msa1369030:CDS 55.0%
TGCCAACCAACCACTCAGTG+TGG - tig0018693:5855-5874 Msa1369030:intron 55.0%
CTATGGCCACACTGAGTGGT+TGG + tig0018693:5864-5883 None:intergenic 55.0%
ACCACTCAGTGTGGCCATAG+AGG - tig0018693:5864-5883 Msa1369030:intron 55.0%
AGTGTGGCCATAGAGGCTTC+AGG - tig0018693:5871-5890 Msa1369030:intron 55.0%
GATCATGGTGTGTCAGCCGT+TGG - tig0018693:6045-6064 Msa1369030:CDS 55.0%
GGTGTGTCAGCCGTTGGATA+TGG - tig0018693:6051-6070 Msa1369030:CDS 55.0%
GGAGCAAAGTGGGGTGAGAA+AGG - tig0018693:6117-6136 Msa1369030:CDS 55.0%
CTCTGGTGAATAGCCCACGA+TGG + tig0018693:4643-4662 None:intergenic 55.0%
! CATCGTGGGCTATTCACCAG+AGG - tig0018693:4641-4660 Msa1369030:three_prime_UTR 55.0%
!! GCATCGACTATGTGGATGCG+GGG + tig0018693:5072-5091 None:intergenic 55.0%
TCAACTGTTGCCGCGGTTGA+AGG - tig0018693:5457-5476 Msa1369030:CDS 55.0%
TGCCAACCAACCACTCAGTG+TGG - tig0018693:5855-5874 Msa1369030:intron 55.0%
CTATGGCCACACTGAGTGGT+TGG + tig0018693:5864-5883 None:intergenic 55.0%
ACCACTCAGTGTGGCCATAG+AGG - tig0018693:5864-5883 Msa1369030:intron 55.0%
AGTGTGGCCATAGAGGCTTC+AGG - tig0018693:5871-5890 Msa1369030:intron 55.0%
GATCATGGTGTGTCAGCCGT+TGG - tig0018693:6045-6064 Msa1369030:CDS 55.0%
GGTGTGTCAGCCGTTGGATA+TGG - tig0018693:6051-6070 Msa1369030:CDS 55.0%
GGAGCAAAGTGGGGTGAGAA+AGG - tig0018693:6117-6136 Msa1369030:CDS 55.0%
GGCCACACTGAGTGGTTGGT+TGG + tig0018693:5860-5879 None:intergenic 60.0%
GCCTCTATGGCCACACTGAG+TGG + tig0018693:5868-5887 None:intergenic 60.0%
GGCCACACTGAGTGGTTGGT+TGG + tig0018693:5860-5879 None:intergenic 60.0%
GCCTCTATGGCCACACTGAG+TGG + tig0018693:5868-5887 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0018693 gene 4493 6440 4493 ID=Msa1369030;Name=Msa1369030
tig0018693 mRNA 4493 6440 4493 ID=Msa1369030-mRNA-1;Parent=Msa1369030;Name=Msa1369030-mRNA-1;_AED=0.08;_eAED=0.08;_QI=65|1|1|1|1|1|4|213|350
tig0018693 exon 4493 4921 4493 ID=Msa1369030-mRNA-1:exon:875;Parent=Msa1369030-mRNA-1
tig0018693 exon 5015 5155 5015 ID=Msa1369030-mRNA-1:exon:874;Parent=Msa1369030-mRNA-1
tig0018693 exon 5258 5493 5258 ID=Msa1369030-mRNA-1:exon:873;Parent=Msa1369030-mRNA-1
tig0018693 exon 5916 6440 5916 ID=Msa1369030-mRNA-1:exon:872;Parent=Msa1369030-mRNA-1
tig0018693 five_prime_UTR 6376 6440 6376 ID=Msa1369030-mRNA-1:five_prime_utr;Parent=Msa1369030-mRNA-1
tig0018693 CDS 5916 6375 5916 ID=Msa1369030-mRNA-1:cds;Parent=Msa1369030-mRNA-1
tig0018693 CDS 5258 5493 5258 ID=Msa1369030-mRNA-1:cds;Parent=Msa1369030-mRNA-1
tig0018693 CDS 5015 5155 5015 ID=Msa1369030-mRNA-1:cds;Parent=Msa1369030-mRNA-1
tig0018693 CDS 4706 4921 4706 ID=Msa1369030-mRNA-1:cds;Parent=Msa1369030-mRNA-1
tig0018693 three_prime_UTR 4493 4705 4493 ID=Msa1369030-mRNA-1:three_prime_utr;Parent=Msa1369030-mRNA-1
Gene Sequence

>Msa1369030

ATGGCTTTTTTCTCCCCCAAAACACTTGTCCTGACCTGCTCCTTATGCTTATTTCTATCTTTAGCATTTGGACGTGATTTCTCCATCGTGGGCTATTCACCAGAGGACTTGAAGTCCATGGATAAGCTCATTGAACTCTTCGAATCATGGATGTCGAGACACGGAAAGATTTATGAGACCATTGAAGAAAAGCTACTCAGGTTCGAGGTCTTTAAGGATAATCTAAAGCACATTGATGATAGGAACAAGGTTGTCAGCAACTACTGGCTTGGTTTGAATGAGTTTGCTGATTTGAGCCATCAAGAGTTCAAGAACAAGTATCTTGGGCTAAAGGTTGACTTGTCTCAAAGGAGAGAGTCCTCAGAAGAGGAATTCACTTATAGAGATGTTGATTTGCCTAAGTCAGTTGATTGGAGAAAGAAAGGTGCTGTAACCCCGGTCAAGAATCAAGGTCAATGTGGTAGTTGCTGGGCATTTTCAACTGTTGCCGCGGTTGAAGGAATAAACCAAATTGTGACAGGGAATTTGACATCGTTGTCTGAGCAAGAATTAATCGACTGCGACACAACTTACAACAATGGTTGCAATGGGGGTCTAATGGACTATGCATTCTCCTTCATTGTAAAAAACGGTGGACTACATAAAGAGGAAGATTATCCTTACATTATGGAGGAAAGCACTTGCGAGATGAAAAAGGAAGTAACTGATGTTGTGACTATTAATGGATATCATGACGTGCCACAAAATAATGAACAAAGCTTATTGAAGGCACTTGCCAACCAACCACTCAGTGTGGCCATAGAGGCTTCAGGCAGAGATTTCCAGTTCTATAGTGGAGGTGTGTTTGATGGACATTGCGGAAGTGAACTAGATCATGGTGTGTCAGCCGTTGGATATGGTACATCAAAGGGTTTGGATTACATTATAGTGAAGAATTCATGGGGAGCAAAGTGGGGTGAGAAAGGGTTTATAAGGATGAAGAGAAACATTGGAAAGTCCGAAGGGATTTGTGGACTCTACAAGATGGCTTCTTATCCCACTAAAAAGAAATAA
Protein sequence

>Msa1369030

MAFFSPKTLVLTCSLCLFLSLAFGRDFSIVGYSPEDLKSMDKLIELFESWMSRHGKIYETIEEKLLRFEVFKDNLKHIDDRNKVVSNYWLGLNEFADLSHQEFKNKYLGLKVDLSQRRESSEEEFTYRDVDLPKSVDWRKKGAVTPVKNQGQCGSCWAFSTVAAVEGINQIVTGNLTSLSEQELIDCDTTYNNGCNGGLMDYAFSFIVKNGGLHKEEDYPYIMEESTCEMKKEVTDVVTINGYHDVPQNNEQSLLKALANQPLSVAIEASGRDFQFYSGGVFDGHCGSELDHGVSAVGYGTSKGLDYIIVKNSWGAKWGEKGFIRMKRNIGKSEGICGLYKMASYPTKKK*