AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0757410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0757410 MtrunA17_Chr5g0404341 98.077 572 5 1 1 572 1 566 0.0 1160
Msa0757410 MtrunA17_Chr5g0404361 82.250 569 92 4 5 572 51 611 0.0 981
Msa0757410 MtrunA17_Chr5g0429511 60.215 558 215 2 15 572 8 558 0.0 723
Msa0757410 MtrunA17_Chr3g0104061 62.500 544 196 3 29 572 21 556 0.0 722
Msa0757410 MtrunA17_Chr4g0005921 60.213 563 215 3 12 572 2 557 0.0 696
Msa0757410 MtrunA17_Chr5g0436461 56.014 557 229 4 21 572 9 554 0.0 673
Msa0757410 MtrunA17_Chr7g0238981 57.989 557 212 8 31 572 44 593 0.0 663
Msa0757410 MtrunA17_Chr7g0237491 54.188 585 243 8 6 572 3 580 0.0 649
Msa0757410 MtrunA17_Chr7g0237441 54.592 588 243 9 1 572 1 580 0.0 648
Msa0757410 MtrunA17_Chr7g0238351 55.102 588 236 9 6 572 1 581 0.0 648
Msa0757410 MtrunA17_Chr7g0238941 53.082 584 252 9 4 572 2 578 0.0 637
Msa0757410 MtrunA17_Chr4g0031901 53.235 541 234 6 31 560 41 573 0.0 607
Msa0757410 MtrunA17_Chr5g0437681 48.973 584 265 8 5 572 1 567 0.0 587
Msa0757410 MtrunA17_Chr3g0114211 49.486 584 265 9 5 572 1 570 0.0 580
Msa0757410 MtrunA17_Chr5g0431581 51.399 572 252 9 13 572 3 560 0.0 577
Msa0757410 MtrunA17_Chr2g0278811 44.658 571 285 6 33 572 37 607 6.24e-177 513
Msa0757410 MtrunA17_Chr4g0008521 44.784 556 283 6 33 572 25 572 5.25e-174 504
Msa0757410 MtrunA17_Chr8g0346581 42.295 584 312 8 1 572 1 571 2.28e-170 495
Msa0757410 MtrunA17_Chr7g0240991 44.014 568 292 11 22 572 13 571 1.09e-163 478
Msa0757410 MtrunA17_Chr7g0240971 44.077 574 296 8 14 572 7 570 2.46e-156 459
Msa0757410 MtrunA17_Chr3g0133861 46.769 325 160 9 242 555 1 323 6.89e-86 270
Msa0757410 MtrunA17_Chr8g0382691 33.942 548 318 16 29 555 29 553 9.62e-83 269
Msa0757410 MtrunA17_Chr5g0436431 52.155 232 104 2 302 530 1 228 8.22e-80 250
Msa0757410 MtrunA17_Chr3g0118321 31.818 594 340 22 12 572 1 562 6.23e-70 235
Msa0757410 MtrunA17_Chr3g0118331 30.580 569 340 19 12 550 1 544 5.49e-65 222
Msa0757410 MtrunA17_Chr3g0133871 47.642 212 110 1 6 216 3 214 5.82e-63 206
Msa0757410 MtrunA17_Chr4g0038671 29.268 574 339 18 15 572 10 532 1.59e-58 204
Msa0757410 MtrunA17_Chr4g0056511 28.920 574 369 17 10 572 4 549 4.01e-58 204
Msa0757410 MtrunA17_Chr3g0143671 29.234 561 335 18 27 572 20 533 1.42e-57 201
Msa0757410 MtrunA17_Chr1g0157341 28.147 572 353 16 14 572 6 532 1.46e-54 193
Msa0757410 MtrunA17_Chr3g0079321 27.624 543 356 16 5 537 1 516 6.21e-54 192
Msa0757410 MtrunA17_Chr4g0024861 29.903 515 302 18 30 532 23 490 2.64e-53 190
Msa0757410 MtrunA17_Chr2g0322441 31.055 512 300 17 30 532 26 493 1.72e-49 179
Msa0757410 MtrunA17_Chr7g0234061 28.180 511 331 16 36 537 31 514 5.20e-49 179
Msa0757410 MtrunA17_Chr8g0374271 28.983 521 300 19 29 532 26 493 1.18e-48 177
Msa0757410 MtrunA17_Chr8g0374261 27.869 549 309 21 17 538 9 497 1.34e-47 174
Msa0757410 MtrunA17_Chr5g0402831 28.107 523 311 18 29 538 26 496 5.93e-46 169
Msa0757410 MtrunA17_Chr4g0043261 27.556 577 355 20 15 571 6 539 1.14e-44 166
Msa0757410 MtrunA17_Chr4g0075071 30.427 539 302 20 13 532 10 494 1.27e-43 163
Msa0757410 MtrunA17_Chr3g0121161 27.163 578 363 22 13 571 46 584 2.28e-43 163
Msa0757410 MtrunA17_Chr3g0121151 27.163 578 363 22 13 571 46 584 5.18e-43 162
Msa0757410 MtrunA17_Chr3g0121171 27.194 581 359 23 13 571 1156 1694 2.62e-42 163
Msa0757410 MtrunA17_Chr3g0121171 27.163 578 363 22 13 571 581 1119 5.13e-42 162
Msa0757410 MtrunA17_Chr3g0121171 27.568 555 345 21 36 571 28 544 9.76e-42 162
Msa0757410 MtrunA17_Chr3g0121171 27.652 528 325 21 63 571 1771 2260 2.64e-36 145
Msa0757410 MtrunA17_Chr4g0024641 29.630 459 261 20 88 532 3 413 1.29e-37 149
Msa0757410 MtrunA17_Chr4g0043251 27.106 546 327 23 52 571 45 545 3.04e-37 145
Msa0757410 MtrunA17_Chr3g0118351 32.416 327 178 11 253 551 6 317 4.36e-31 124
Msa0757410 MtrunA17_Chr1g0197301 27.978 361 213 14 227 572 1 329 3.47e-27 112
Msa0757410 MtrunA17_Chr3g0118341 34.483 174 106 6 12 181 4 173 3.40e-24 100
Msa0757410 MtrunA17_Chr5g0436411 46.479 71 36 1 21 89 9 79 1.33e-16 74.7
Msa0757410 MtrunA17_Chr1g0197311 28.251 223 112 8 44 231 34 243 2.21e-16 79.0
Msa0757410 MtrunA17_Chr4g0075781 29.518 166 94 5 142 302 5 152 1.14e-13 69.3
Msa0757410 MtrunA17_Chr3g0118931 38.462 91 51 2 482 572 10 95 3.50e-11 60.5
Msa0757410 MtrunA17_Chr8g0370581 82.143 28 5 0 189 216 1 28 3.95e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0757410 AT5G03260.1 75.313 559 129 3 14 572 8 557 0.0 889
Msa0757410 AT2G38080.1 60.708 565 211 4 10 572 3 558 0.0 729
Msa0757410 AT5G58910.2 58.699 569 224 4 9 572 5 567 0.0 699
Msa0757410 AT5G58910.3 58.699 569 223 5 9 572 5 566 0.0 695
Msa0757410 AT5G58910.1 60.075 536 196 5 42 572 1 523 0.0 667
Msa0757410 AT5G01190.1 57.904 563 221 7 15 572 7 558 0.0 655
Msa0757410 AT5G60020.1 54.124 582 239 8 12 572 3 577 0.0 646
Msa0757410 AT2G29130.1 54.007 574 237 10 17 572 9 573 0.0 635
Msa0757410 AT5G60020.3 55.797 552 216 8 42 572 1 545 0.0 633
Msa0757410 AT5G01190.2 57.016 563 212 8 15 572 7 544 0.0 632
Msa0757410 AT5G05390.1 50.704 568 257 9 17 572 9 565 0.0 588
Msa0757410 AT5G60020.2 52.963 540 226 8 12 530 3 535 0.0 578
Msa0757410 AT1G18140.1 49.644 562 257 8 31 572 26 581 0.0 578
Msa0757410 AT2G30210.1 49.228 583 268 8 5 572 1 570 0.0 575
Msa0757410 AT2G40370.1 47.692 585 268 9 15 572 7 580 0.0 556
Msa0757410 AT5G07130.1 48.205 585 270 10 5 572 1 569 0.0 548
Msa0757410 AT5G09360.1 47.100 569 279 10 13 572 14 569 0.0 543
Msa0757410 AT3G09220.1 45.714 560 285 7 5 555 1 550 3.85e-172 500
Msa0757410 AT2G46570.1 44.704 557 281 10 29 572 27 569 6.78e-172 499
Msa0757410 AT5G07130.2 50.101 493 219 9 97 572 2 484 5.93e-166 481
Msa0757410 AT5G07130.3 50.101 493 219 9 97 572 2 484 5.93e-166 481
Msa0757410 AT5G01040.1 43.772 578 297 9 9 572 3 566 4.42e-164 480
Msa0757410 AT5G01050.1 43.523 579 299 9 9 572 3 568 5.98e-164 479
Msa0757410 AT5G48100.1 41.993 562 296 12 14 562 9 553 1.72e-152 449
Msa0757410 AT2G46570.2 44.242 495 249 10 91 572 4 484 6.46e-148 435
Msa0757410 AT3G09220.2 46.507 458 230 6 107 555 2 453 1.11e-142 421
Msa0757410 AT4G39830.1 32.215 596 337 20 12 572 14 577 1.18e-83 272
Msa0757410 AT5G21105.1 32.874 581 338 19 1 551 1 559 1.83e-79 261
Msa0757410 AT5G21100.1 31.743 545 325 14 31 551 21 542 5.82e-76 252
Msa0757410 AT5G21105.3 32.321 560 327 19 1 530 1 538 1.35e-70 237
Msa0757410 AT4G39830.2 32.742 507 275 19 100 572 8 482 7.64e-63 214
Msa0757410 AT4G39830.3 32.742 507 275 19 100 572 6 480 7.69e-63 214
Msa0757410 AT4G39830.4 32.283 508 263 18 100 572 8 469 2.30e-59 205
Msa0757410 AT1G41830.1 28.055 581 354 18 5 572 2 531 5.31e-57 200
Msa0757410 AT1G76160.1 28.219 567 349 15 17 572 11 530 1.11e-56 199
Msa0757410 AT4G12420.1 28.008 532 348 15 16 537 6 512 1.87e-56 200
Msa0757410 AT4G12420.2 28.008 532 348 15 16 537 6 512 1.87e-56 200
Msa0757410 AT4G25240.2 28.328 586 366 20 5 572 1 550 6.03e-56 198
Msa0757410 AT4G25240.1 28.328 586 366 20 5 572 1 550 6.03e-56 198
Msa0757410 AT1G21850.1 28.571 539 315 17 17 538 11 496 2.18e-55 196
Msa0757410 AT5G51480.1 27.336 578 355 20 17 572 16 550 1.41e-54 195
Msa0757410 AT1G75790.1 29.508 549 327 16 31 564 24 527 2.11e-54 193
Msa0757410 AT5G66920.1 28.699 561 327 19 30 572 33 538 3.73e-54 192
Msa0757410 AT1G21860.1 28.364 550 328 17 1 538 1 496 6.10e-54 192
Msa0757410 AT4G28090.1 27.820 532 324 15 55 572 49 534 1.31e-53 191
Msa0757410 AT4G22010.1 29.361 579 337 20 10 572 8 530 2.93e-52 187
Msa0757410 AT4G38420.1 28.327 526 319 16 22 532 17 499 2.26e-51 185
Msa0757410 AT5G48450.2 28.684 509 313 17 36 532 31 501 5.79e-50 182
Msa0757410 AT5G48450.1 28.684 509 313 17 36 532 31 501 1.79e-49 181
Msa0757410 AT4G38420.3 28.150 508 307 16 22 514 17 481 4.31e-47 172
Msa0757410 AT5G21105.2 34.234 333 198 9 225 551 51 368 1.24e-44 163
Msa0757410 AT4G38420.2 27.708 480 290 15 22 486 17 454 2.89e-43 160
Msa0757410 AT2G23630.1 29.341 501 290 19 52 538 48 498 1.10e-42 161
Msa0757410 AT2G23630.2 29.341 501 290 19 52 538 53 503 1.29e-42 160
Msa0757410 AT4G37160.1 26.617 541 330 19 14 538 11 500 1.88e-41 157
Msa0757410 AT1G55560.1 28.283 495 299 21 52 532 44 496 5.92e-38 147
Msa0757410 AT1G55570.1 26.829 492 311 16 52 532 47 500 1.77e-36 143
Msa0757410 AT3G13400.2 27.202 511 316 20 36 532 29 497 1.35e-35 140
Msa0757410 AT3G13400.1 27.202 511 316 20 36 532 29 497 1.35e-35 140
Msa0757410 AT3G13390.1 26.190 504 327 16 38 532 32 499 3.41e-34 137
Msa0757410 AT4G37160.2 26.176 489 295 18 14 486 11 449 2.77e-33 132

Find 143 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTGTTATATTTATCTTTC+TGG 0.115926 5_2:+12295714 Msa0757410:three_prime_UTR
AAACCAATTGTAACAGTAAA+TGG 0.140664 5_2:+12293095 Msa0757410:CDS
TGGTTAAGGGCTACTGTTTA+TGG 0.146954 5_2:+12293465 Msa0757410:CDS
AGACCCTGCTAAATATAATT+TGG 0.195177 5_2:+12295018 Msa0757410:CDS
GTTAAACTTGCCTAGCATTT+TGG 0.196468 5_2:-12295495 None:intergenic
CAGCTCAACCGTAGAATTAA+AGG 0.252917 5_2:-12294888 None:intergenic
TCACATCCATTTCATCTTCA+TGG 0.290780 5_2:+12294944 Msa0757410:CDS
ACAACACAATCCATTCTAAT+TGG 0.290849 5_2:+12294335 Msa0757410:CDS
ATGCTCATATTCTTTGGTTA+AGG 0.305616 5_2:+12293451 Msa0757410:CDS
GCATATAACTCACATCAAAT+TGG 0.309196 5_2:-12292523 None:intergenic
TGTTGCTACAAGAACTTTCA+TGG 0.327046 5_2:+12294415 Msa0757410:CDS
TTCTTTATTGCTGCTTCAAC+AGG 0.329252 5_2:-12292497 None:intergenic
GGAAAAGGGGTTCCTGGTTT+AGG 0.331002 5_2:-12293504 None:intergenic
GTATGTGCATCCGACATATT+TGG 0.355480 5_2:-12293894 None:intergenic
TGTTTGGAATTCCTTTGTAT+TGG 0.355508 5_2:-12294481 None:intergenic
GGTGGCATGCTCATATTCTT+TGG 0.356615 5_2:+12293445 Msa0757410:CDS
AAAGGAGCCAAAGGCTTATC+AGG 0.358204 5_2:-12294797 None:intergenic
ATTGTTATATTTATCTTTCT+GGG 0.364752 5_2:+12295715 Msa0757410:three_prime_UTR
CTCCCATTTACTGTTACAAT+TGG 0.366040 5_2:-12293098 None:intergenic
TGCTCATATTCTTTGGTTAA+GGG 0.367150 5_2:+12293452 Msa0757410:CDS
TTTGTTGTTGGAACTGGAAT+TGG 0.368677 5_2:+12294977 Msa0757410:CDS
TTTAGAGTTGCACACTGGTT+GGG 0.368974 5_2:+12295398 Msa0757410:CDS
GTCTCATAGTTCAGATTGTA+TGG 0.369346 5_2:+12295549 Msa0757410:three_prime_UTR
GTTATTGTTCTTACGTTTCT+CGG 0.370163 5_2:-12293952 None:intergenic
ATGTATAGCTTCCACCAGTT+TGG 0.371631 5_2:-12293386 None:intergenic
GGTGCGCCAGTATAGTTAAA+AGG 0.375538 5_2:-12294815 None:intergenic
GCAACCCCATTTGGTTCCCT+TGG 0.381589 5_2:-12293869 None:intergenic
AAGTTTGTGTCATTTGCATT+AGG 0.383453 5_2:-12294533 None:intergenic
ATATAATTTGGTTGATCCTA+TGG 0.386113 5_2:+12295030 Msa0757410:CDS
AGCTCATCACTTTGATATCA+AGG 0.386540 5_2:+12294754 Msa0757410:CDS
GGAAAAGGAAAAGGGGTTCC+TGG 0.388932 5_2:-12293510 None:intergenic
CTATGGAGAGGAACACTGTT+GGG 0.398198 5_2:+12295047 Msa0757410:CDS
ACGGCTTTCGTTGTGGAAGA+TGG 0.405749 5_2:+12295429 Msa0757410:CDS
TGCTTTGACTAGAACATTTG+TGG 0.409362 5_2:-12294369 None:intergenic
TCAACCAAATTATATTTAGC+AGG 0.412948 5_2:-12295022 None:intergenic
TCTCTAGCAGGTTGTGGAAA+AGG 0.413807 5_2:-12293525 None:intergenic
TTATAACCATGAAGATGAAA+TGG 0.419238 5_2:-12294950 None:intergenic
AATGAAGGGATGATAGTGTT+TGG 0.419479 5_2:-12294497 None:intergenic
CACTGGTTGGGGATTGAAAA+CGG 0.424322 5_2:+12295410 Msa0757410:CDS
CTTTAATTCTACGGTTGAGC+TGG 0.424324 5_2:+12294889 Msa0757410:CDS
TATTTGGTGGCAACCCCATT+TGG 0.424538 5_2:-12293878 None:intergenic
CCTTCTGTAGCATAAATTGT+TGG 0.426238 5_2:-12293131 None:intergenic
TTTGCATTAGGAAGTGTTGT+AGG 0.428912 5_2:-12294521 None:intergenic
TATTTAGCAGGGTCTTTAGC+AGG 0.438959 5_2:-12295010 None:intergenic
TTTATTGTGTAACAGGAGAA+TGG 0.442017 5_2:+12293817 Msa0757410:intron
TCGGATGCACATACAATCAA+TGG 0.442094 5_2:+12293903 Msa0757410:CDS
GGAAGTGTTGTAGGAAATGA+AGG 0.446604 5_2:-12294512 None:intergenic
ACTTTGAGAGGAACATTAGC+AGG 0.448431 5_2:-12294605 None:intergenic
CAAGATCGCCTTTAATTCTA+CGG 0.451231 5_2:+12294880 Msa0757410:CDS
GTAGCATAAATTGTTGGCCC+TGG 0.454242 5_2:-12293125 None:intergenic
GCCCGTCTTAGTACCGAGAT+TGG 0.456234 5_2:-12294846 None:intergenic
CTAAACCAATAGTGTAGAAA+AGG 0.460863 5_2:-12294637 None:intergenic
CGGCTTTCGTTGTGGAAGAT+GGG 0.464431 5_2:+12295430 Msa0757410:CDS
ACTCAATGTCCAATCCAAAC+TGG 0.464665 5_2:+12293372 Msa0757410:CDS
TATCGCAATGGTTGGGCTGA+TGG 0.465845 5_2:+12293336 Msa0757410:CDS
AACCAATTGTAACAGTAAAT+GGG 0.467133 5_2:+12293096 Msa0757410:CDS
GTAAACCAAGGGAACCAAAT+GGG 0.470340 5_2:+12293864 Msa0757410:CDS
TTCGTTGTGGAAGATGGGCC+AGG 0.471809 5_2:+12295435 Msa0757410:CDS
TCAAATTCTCTAGCAGGTTG+TGG 0.473611 5_2:-12293531 None:intergenic
TAGCTTCCACCAGTTTGGAT+TGG 0.474223 5_2:-12293381 None:intergenic
GCAGGTTGTGGAAAAGGAAA+AGG 0.474816 5_2:-12293519 None:intergenic
TTGACCAGGACCAATTAGAA+TGG 0.476488 5_2:-12294345 None:intergenic
TTAGAGTTGCACACTGGTTG+GGG 0.479004 5_2:+12295399 Msa0757410:CDS
CAAAACAAAAGTTGTCTAAG+AGG 0.485707 5_2:+12292387 Msa0757410:five_prime_UTR
ACAAGTTCAAATTCTCTAGC+AGG 0.487160 5_2:-12293537 None:intergenic
TTGGACCGCAATTCGATTCA+CGG 0.487234 5_2:+12295084 Msa0757410:CDS
TCTTGTCCTACATGCATCAA+TGG 0.490940 5_2:+12294668 Msa0757410:CDS
GAACAAGGAAAGAGTGGTCC+TGG 0.497425 5_2:-12293930 None:intergenic
CGATTCACGGCTAATAATCC+AGG 0.504440 5_2:+12295097 Msa0757410:CDS
AATATAACATATCAATTCAC+TGG 0.504449 5_2:+12293189 Msa0757410:CDS
TTGGGGTCCCTACCGGTGGT+TGG 0.507604 5_2:+12295065 Msa0757410:CDS
CAGGTTGTGGAAAAGGAAAA+GGG 0.509861 5_2:-12293518 None:intergenic
AACACTGTTGGGGTCCCTAC+CGG 0.517718 5_2:+12295058 Msa0757410:CDS
TTTGGAAGGTCCTTTGGTGG+TGG 0.517886 5_2:-12295477 None:intergenic
TTTCATGGATGCACCACTCT+CGG 0.522361 5_2:+12294430 Msa0757410:CDS
AGTAAACCAAGGGAACCAAA+TGG 0.525185 5_2:+12293863 Msa0757410:CDS
CAGGACAAAGAGGAACTTTG+TGG 0.526013 5_2:+12293424 Msa0757410:CDS
TTAAACAGTATCGCAATGGT+TGG 0.526070 5_2:+12293328 Msa0757410:CDS
AGAATGGATTGTGTTGTGAA+TGG 0.527678 5_2:-12294329 None:intergenic
TCGAATTGCGGTCCAACCAC+CGG 0.530904 5_2:-12295077 None:intergenic
ATTTAGAGTTGCACACTGGT+TGG 0.533023 5_2:+12295397 Msa0757410:CDS
TTCTTACGTTTCTCGGAACA+AGG 0.533666 5_2:-12293945 None:intergenic
TAAACAGTATCGCAATGGTT+GGG 0.534891 5_2:+12293329 Msa0757410:CDS
GCCAATCTCGGTACTAAGAC+GGG 0.536336 5_2:+12294845 Msa0757410:CDS
AGAACATTTGTGGTTTGACC+AGG 0.539222 5_2:-12294359 None:intergenic
CGGATGCACATACAATCAAT+GGG 0.539224 5_2:+12293904 Msa0757410:CDS
AGAGAATTTGAACTTGTGCT+AGG 0.539942 5_2:+12293543 Msa0757410:CDS
GCACCGTTGACCGCCAATCT+CGG 0.543409 5_2:+12294833 Msa0757410:CDS
ACAGTAAATGGGAGGTACCC+AGG 0.547259 5_2:+12293107 Msa0757410:CDS
CAATCCATTCTAATTGGTCC+TGG 0.548604 5_2:+12294341 Msa0757410:CDS
GGACATTGAGTAATATAAGC+TGG 0.548729 5_2:-12293360 None:intergenic
GTAGCAACAAAGTATCTGCT+TGG 0.549623 5_2:-12294401 None:intergenic
GTTGTCTAAGAGGAGCATAA+TGG 0.556107 5_2:+12292397 Msa0757410:exon
TATGCAATGGAGGTTGAGAA+AGG 0.556866 5_2:+12294197 Msa0757410:CDS
CATACAATCAATGGGAAGCC+AGG 0.558040 5_2:+12293912 Msa0757410:CDS
TAGCATAAATTGTTGGCCCT+GGG 0.558784 5_2:-12293124 None:intergenic
ATCTGTTCTACCACCACCAA+AGG 0.559203 5_2:+12295467 Msa0757410:CDS
ACATATGACTTCAATGTCAC+AGG 0.560816 5_2:+12293405 Msa0757410:CDS
TGTATGATTATATAGGTGTA+TGG 0.566550 5_2:+12295361 Msa0757410:intron
CGCCAATCTCGGTACTAAGA+CGG 0.571925 5_2:+12294844 Msa0757410:CDS
TGTCATGTTGTGACCAGCAA+GGG 0.572003 5_2:-12294276 None:intergenic
AAAGGACCTTCCAAAATGCT+AGG 0.572454 5_2:+12295485 Msa0757410:CDS
TGAAGATACATATGCAATGG+AGG 0.572819 5_2:+12294187 Msa0757410:intron
CCTATGGAGAGGAACACTGT+TGG 0.575145 5_2:+12295046 Msa0757410:CDS
AGGTTTCTATCAACTTTGAG+AGG 0.579119 5_2:-12294617 None:intergenic
CAGTAAATGGGAGGTACCCA+GGG 0.579786 5_2:+12293108 Msa0757410:CDS
CAACCAAATTATATTTAGCA+GGG 0.585738 5_2:-12295021 None:intergenic
TTCAATGTCACAGGACAAAG+AGG 0.588439 5_2:+12293414 Msa0757410:CDS
GTACCGAGATTGGCGGTCAA+CGG 0.589957 5_2:-12294836 None:intergenic
GCTCATCACTTTGATATCAA+GGG 0.590306 5_2:+12294755 Msa0757410:CDS
ATTGAAAACGGCTTTCGTTG+TGG 0.592669 5_2:+12295422 Msa0757410:CDS
CCAACAGTGTTCCTCTCCAT+AGG 0.596019 5_2:-12295046 None:intergenic
CAATGTCCAATCCAAACTGG+TGG 0.606738 5_2:+12293375 Msa0757410:CDS
TTAACAAAGATATGTGACTT+CGG 0.608585 5_2:-12292439 None:intergenic
AGAATGGTGGCACAAAGATG+TGG 0.608690 5_2:+12293833 Msa0757410:CDS
ATTGTTATCATGCCTAAACC+AGG 0.611746 5_2:+12293492 Msa0757410:CDS
CCAACAATTTATGCTACAGA+AGG 0.615473 5_2:+12293131 Msa0757410:CDS
TTCTCGGAACAAGGAAAGAG+TGG 0.616470 5_2:-12293936 None:intergenic
TTGCGGTCCAACCACCGGTA+GGG 0.617520 5_2:-12295072 None:intergenic
CGTCTTAGTACCGAGATTGG+CGG 0.619297 5_2:-12294843 None:intergenic
GGGGTTGCCACCAAATATGT+CGG 0.620199 5_2:+12293884 Msa0757410:CDS
TAAACCAAGGGAACCAAATG+GGG 0.620759 5_2:+12293865 Msa0757410:CDS
ACAGCTATATTCCAATACAA+AGG 0.622211 5_2:+12294470 Msa0757410:CDS
CTGTCATGTTGTGACCAGCA+AGG 0.622828 5_2:-12294277 None:intergenic
TATGGAGAGGAACACTGTTG+GGG 0.624128 5_2:+12295048 Msa0757410:CDS
TGGAAGAGATAGTAAACCAA+GGG 0.624447 5_2:+12293853 Msa0757410:CDS
ACTGTTGGGGTCCCTACCGG+TGG 0.626035 5_2:+12295061 Msa0757410:CDS
CGTGTTCCATTGATGCATGT+AGG 0.626273 5_2:-12294674 None:intergenic
CTTTGAGAGGAACATTAGCA+GGG 0.634352 5_2:-12294604 None:intergenic
TGTCATTTAGAGTTGCACAC+TGG 0.638629 5_2:+12295393 Msa0757410:CDS
ATTGCGGTCCAACCACCGGT+AGG 0.642154 5_2:-12295073 None:intergenic
GGACTTAAACAGTATCGCAA+TGG 0.642768 5_2:+12293324 Msa0757410:CDS
GTATAGTTAAAAGGAGCCAA+AGG 0.642857 5_2:-12294806 None:intergenic
ATTAGCCGTGAATCGAATTG+CGG 0.656457 5_2:-12295089 None:intergenic
GTGATGAGCTTGAAGAAGCG+CGG 0.657612 5_2:-12294741 None:intergenic
ATTTGGTTGATCCTATGGAG+AGG 0.658256 5_2:+12295035 Msa0757410:CDS
GTGGAAGAGATAGTAAACCA+AGG 0.661655 5_2:+12293852 Msa0757410:CDS
GAAGTGTTGTAGGAAATGAA+GGG 0.669774 5_2:-12294511 None:intergenic
ATTGTGTAACAGGAGAATGG+TGG 0.675069 5_2:+12293820 Msa0757410:intron
GACAAAGAGGAACTTTGTGG+TGG 0.676053 5_2:+12293427 Msa0757410:CDS
AGGTTGTGGAAAAGGAAAAG+GGG 0.686432 5_2:-12293517 None:intergenic
TGTGCATCCGACATATTTGG+TGG 0.699108 5_2:-12293891 None:intergenic
CAATTGTAACAGTAAATGGG+AGG 0.721812 5_2:+12293099 Msa0757410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGTATAATATATATAAGTA+TGG + chr5_2:12292549-12292568 Msa0757410:intron 10.0%
!! AAATAATGATAAAAAAACAT+GGG - chr5_2:12292648-12292667 None:intergenic 10.0%
!! AAAATAATGATAAAAAAACA+TGG - chr5_2:12292649-12292668 None:intergenic 10.0%
!!! ATTATTTTTTATACGATTTT+GGG + chr5_2:12292661-12292680 Msa0757410:intron 10.0%
!!! GTTTTTGTTATATAAATTAT+AGG + chr5_2:12293298-12293317 Msa0757410:intron 10.0%
!!! TTTTTTATTTTTGTTTCTAA+AGG + chr5_2:12295265-12295284 Msa0757410:intron 10.0%
!!! CATTATTTTTTATACGATTT+TGG + chr5_2:12292660-12292679 Msa0757410:intron 15.0%
!! AAAAAATTGAATTTGTATCA+TGG - chr5_2:12292854-12292873 None:intergenic 15.0%
!!! CTTTAAAATAAATCACTTTT+AGG - chr5_2:12292991-12293010 None:intergenic 15.0%
!!! TTGATATGTTATATTTTACA+TGG - chr5_2:12293184-12293203 None:intergenic 15.0%
!!! TTTTTTACCAAACATAAATT+TGG + chr5_2:12293227-12293246 Msa0757410:intron 15.0%
!!! GTGATTTAAAACTTTTATTT+AGG + chr5_2:12293739-12293758 Msa0757410:intron 15.0%
!! TTCAAATAAACTAAATTAGA+AGG - chr5_2:12293765-12293784 None:intergenic 15.0%
!!! TTAATTAACTTAGTTTTGTT+TGG - chr5_2:12294118-12294137 None:intergenic 15.0%
!!! CAAATTACAAATTTTAATGA+GGG - chr5_2:12294163-12294182 None:intergenic 15.0%
!!! ACAAATTACAAATTTTAATG+AGG - chr5_2:12294164-12294183 None:intergenic 15.0%
!! TTAGAGATGAAAAAAAAAAT+TGG + chr5_2:12295168-12295187 Msa0757410:intron 15.0%
!! AAAATGAAAATCTTCTAAAT+TGG - chr5_2:12295197-12295216 None:intergenic 15.0%
!! ATTGTTATATTTATCTTTCT+GGG + chr5_2:12295715-12295734 Msa0757410:three_prime_UTR 15.0%
!!! TCTTTGTTAATAGTTCTTTT+TGG + chr5_2:12292452-12292471 Msa0757410:CDS 20.0%
!!! TATGTTATATTTTACATGGT+TGG - chr5_2:12293180-12293199 None:intergenic 20.0%
!! AATATAACATATCAATTCAC+TGG + chr5_2:12293189-12293208 Msa0757410:CDS 20.0%
!! TTTGGTAAAAAAGAACAAAT+TGG - chr5_2:12293219-12293238 None:intergenic 20.0%
!! TGTTATATAAATTATAGGCA+TGG + chr5_2:12293303-12293322 Msa0757410:intron 20.0%
!!! TTCAAATTTTATTGTGTAAC+AGG + chr5_2:12293810-12293829 Msa0757410:intron 20.0%
!!! AATTTTAATGAGGGAAATTT+AGG - chr5_2:12294154-12294173 None:intergenic 20.0%
!! AAATTCTTACCATATGATAT+TGG + chr5_2:12295319-12295338 Msa0757410:intron 20.0%
!!! TTTTGCATGTATGATTATAT+AGG + chr5_2:12295354-12295373 Msa0757410:intron 20.0%
!! GATTGTTATATTTATCTTTC+TGG + chr5_2:12295714-12295733 Msa0757410:three_prime_UTR 20.0%
! TTAACAAAGATATGTGACTT+CGG - chr5_2:12292442-12292461 None:intergenic 25.0%
!!! ATAGTTCTTTTTGGTTTTCT+TGG + chr5_2:12292461-12292480 Msa0757410:CDS 25.0%
!!! ATTATGTCACGTTTTAGTAA+AGG - chr5_2:12292623-12292642 None:intergenic 25.0%
! AGATGAGAATCTGAAAAAAT+AGG - chr5_2:12292935-12292954 None:intergenic 25.0%
! AAACCAATTGTAACAGTAAA+TGG + chr5_2:12293095-12293114 Msa0757410:CDS 25.0%
! AACCAATTGTAACAGTAAAT+GGG + chr5_2:12293096-12293115 Msa0757410:CDS 25.0%
! TATTTGCAACTAAAAAAGTG+CGG + chr5_2:12293594-12293613 Msa0757410:intron 25.0%
! ATAATTAGTTGAACGAGATA+AGG - chr5_2:12294092-12294111 None:intergenic 25.0%
! TTATCTCGTTCAACTAATTA+TGG + chr5_2:12294091-12294110 Msa0757410:intron 25.0%
!!! TTTTGAAGATACATATGCAA+TGG + chr5_2:12294184-12294203 Msa0757410:intron 25.0%
! TTATAACCATGAAGATGAAA+TGG - chr5_2:12294953-12294972 None:intergenic 25.0%
!!! GGTTATAACTTTTTTGTTGT+TGG + chr5_2:12294965-12294984 Msa0757410:CDS 25.0%
! CAACCAAATTATATTTAGCA+GGG - chr5_2:12295024-12295043 None:intergenic 25.0%
! TCAACCAAATTATATTTAGC+AGG - chr5_2:12295025-12295044 None:intergenic 25.0%
! ATATAATTTGGTTGATCCTA+TGG + chr5_2:12295030-12295049 Msa0757410:CDS 25.0%
!! TTTACGTCTCTAATTTTCTT+CGG + chr5_2:12295216-12295235 Msa0757410:intron 25.0%
! TGTATGATTATATAGGTGTA+TGG + chr5_2:12295361-12295380 Msa0757410:intron 25.0%
! TTAACCAAAAAGAAATTGCT+AGG + chr5_2:12295513-12295532 Msa0757410:three_prime_UTR 25.0%
CAAAACAAAAGTTGTCTAAG+AGG + chr5_2:12292387-12292406 Msa0757410:five_prime_UTR 30.0%
GCATATAACTCACATCAAAT+TGG - chr5_2:12292526-12292545 None:intergenic 30.0%
TAACATATCAATTCACTGGT+AGG + chr5_2:12293193-12293212 Msa0757410:intron 30.0%
CATGTGACCAAATTTATGTT+TGG - chr5_2:12293237-12293256 None:intergenic 30.0%
GAGATTCTAACAAGAAAACA+TGG + chr5_2:12293269-12293288 Msa0757410:intron 30.0%
ATGCTCATATTCTTTGGTTA+AGG + chr5_2:12293451-12293470 Msa0757410:CDS 30.0%
TGCTCATATTCTTTGGTTAA+GGG + chr5_2:12293452-12293471 Msa0757410:CDS 30.0%
ATACAATACAACCTCAATCA+TGG - chr5_2:12293662-12293681 None:intergenic 30.0%
TGATTGAGGTTGTATTGTAT+CGG + chr5_2:12293662-12293681 Msa0757410:intron 30.0%
TTTATTGTGTAACAGGAGAA+TGG + chr5_2:12293817-12293836 Msa0757410:intron 30.0%
GTTATTGTTCTTACGTTTCT+CGG - chr5_2:12293955-12293974 None:intergenic 30.0%
AGGTCGCTTATAAAAAATGA+CGG - chr5_2:12293995-12294014 None:intergenic 30.0%
ACAACACAATCCATTCTAAT+TGG + chr5_2:12294335-12294354 Msa0757410:CDS 30.0%
ACAGCTATATTCCAATACAA+AGG + chr5_2:12294470-12294489 Msa0757410:CDS 30.0%
! TGTTTGGAATTCCTTTGTAT+TGG - chr5_2:12294484-12294503 None:intergenic 30.0%
!! AAGTTTGTGTCATTTGCATT+AGG - chr5_2:12294536-12294555 None:intergenic 30.0%
! AGAAACCTTTTCTACACTAT+TGG + chr5_2:12294632-12294651 Msa0757410:CDS 30.0%
CTAAACCAATAGTGTAGAAA+AGG - chr5_2:12294640-12294659 None:intergenic 30.0%
!!! CTTTTCTACACTATTGGTTT+AGG + chr5_2:12294638-12294657 Msa0757410:CDS 30.0%
!!! AACTTTTTTGTTGTTGGAAC+TGG + chr5_2:12294971-12294990 Msa0757410:CDS 30.0%
AGACCCTGCTAAATATAATT+TGG + chr5_2:12295018-12295037 Msa0757410:CDS 30.0%
! TTTTAATGCAGTTGTTGACA+AGG - chr5_2:12295127-12295146 None:intergenic 30.0%
TGTCAACAACTGCATTAAAA+AGG + chr5_2:12295127-12295146 Msa0757410:intron 30.0%
TCATATGGTAAGAATTTGAC+AGG - chr5_2:12295316-12295335 None:intergenic 30.0%
! AGAATAACTGCAATTTTTGC+AGG - chr5_2:12295625-12295644 None:intergenic 30.0%
! TTCTTTATTGCTGCTTCAAC+AGG - chr5_2:12292500-12292519 None:intergenic 35.0%
!!! CTGTTACAATTGGTTTTGCA+TGG - chr5_2:12293091-12293110 None:intergenic 35.0%
CTCCCATTTACTGTTACAAT+TGG - chr5_2:12293101-12293120 None:intergenic 35.0%
CAATTGTAACAGTAAATGGG+AGG + chr5_2:12293099-12293118 Msa0757410:CDS 35.0%
CCTTCTGTAGCATAAATTGT+TGG - chr5_2:12293134-12293153 None:intergenic 35.0%
CCAACAATTTATGCTACAGA+AGG + chr5_2:12293131-12293150 Msa0757410:CDS 35.0%
TTAAACAGTATCGCAATGGT+TGG + chr5_2:12293328-12293347 Msa0757410:CDS 35.0%
TAAACAGTATCGCAATGGTT+GGG + chr5_2:12293329-12293348 Msa0757410:CDS 35.0%
GGACATTGAGTAATATAAGC+TGG - chr5_2:12293363-12293382 None:intergenic 35.0%
ACATATGACTTCAATGTCAC+AGG + chr5_2:12293405-12293424 Msa0757410:CDS 35.0%
ATTGTTATCATGCCTAAACC+AGG + chr5_2:12293492-12293511 Msa0757410:CDS 35.0%
ACAAGTTCAAATTCTCTAGC+AGG - chr5_2:12293540-12293559 None:intergenic 35.0%
AGAGAATTTGAACTTGTGCT+AGG + chr5_2:12293543-12293562 Msa0757410:CDS 35.0%
TGGAAGAGATAGTAAACCAA+GGG + chr5_2:12293853-12293872 Msa0757410:CDS 35.0%
TCGCTTATAAAAAATGACGG+AGG - chr5_2:12293992-12294011 None:intergenic 35.0%
CAAAAGAACGCTTATAACGA+GGG + chr5_2:12294025-12294044 Msa0757410:intron 35.0%
TGAAGATACATATGCAATGG+AGG + chr5_2:12294187-12294206 Msa0757410:intron 35.0%
!! AGAATGGATTGTGTTGTGAA+TGG - chr5_2:12294332-12294351 None:intergenic 35.0%
TGCTTTGACTAGAACATTTG+TGG - chr5_2:12294372-12294391 None:intergenic 35.0%
TGTTGCTACAAGAACTTTCA+TGG + chr5_2:12294415-12294434 Msa0757410:CDS 35.0%
! AATGAAGGGATGATAGTGTT+TGG - chr5_2:12294500-12294519 None:intergenic 35.0%
!! GAAGTGTTGTAGGAAATGAA+GGG - chr5_2:12294514-12294533 None:intergenic 35.0%
!! TTTGCATTAGGAAGTGTTGT+AGG - chr5_2:12294524-12294543 None:intergenic 35.0%
AGGTTTCTATCAACTTTGAG+AGG - chr5_2:12294620-12294639 None:intergenic 35.0%
AGCTCATCACTTTGATATCA+AGG + chr5_2:12294754-12294773 Msa0757410:CDS 35.0%
GCTCATCACTTTGATATCAA+GGG + chr5_2:12294755-12294774 Msa0757410:CDS 35.0%
! TGATTTTCCTGATAAGCCTT+TGG + chr5_2:12294790-12294809 Msa0757410:CDS 35.0%
GTATAGTTAAAAGGAGCCAA+AGG - chr5_2:12294809-12294828 None:intergenic 35.0%
!! TTGGCTCCTTTTAACTATAC+TGG + chr5_2:12294809-12294828 Msa0757410:CDS 35.0%
CAAGATCGCCTTTAATTCTA+CGG + chr5_2:12294880-12294899 Msa0757410:CDS 35.0%
TCACATCCATTTCATCTTCA+TGG + chr5_2:12294944-12294963 Msa0757410:CDS 35.0%
!! TTTGTTGTTGGAACTGGAAT+TGG + chr5_2:12294977-12294996 Msa0757410:CDS 35.0%
GAATTTGACAGGACAATGTA+AGG - chr5_2:12295305-12295324 None:intergenic 35.0%
ACATGCATGCCAATATCATA+TGG - chr5_2:12295331-12295350 None:intergenic 35.0%
! AGAACAGATTGATCTTTTCC+TGG - chr5_2:12295456-12295475 None:intergenic 35.0%
! GTTAAACTTGCCTAGCATTT+TGG - chr5_2:12295498-12295517 None:intergenic 35.0%
! CATGCCTAGCAATTTCTTTT+TGG - chr5_2:12295520-12295539 None:intergenic 35.0%
CAAAAAGAAATTGCTAGGCA+TGG + chr5_2:12295518-12295537 Msa0757410:three_prime_UTR 35.0%
GTCTCATAGTTCAGATTGTA+TGG + chr5_2:12295549-12295568 Msa0757410:three_prime_UTR 35.0%
! GTTGTCTAAGAGGAGCATAA+TGG + chr5_2:12292397-12292416 Msa0757410:exon 40.0%
TAGCATAAATTGTTGGCCCT+GGG - chr5_2:12293127-12293146 None:intergenic 40.0%
GGACTTAAACAGTATCGCAA+TGG + chr5_2:12293324-12293343 Msa0757410:CDS 40.0%
ACTCAATGTCCAATCCAAAC+TGG + chr5_2:12293372-12293391 Msa0757410:CDS 40.0%
ATGTATAGCTTCCACCAGTT+TGG - chr5_2:12293389-12293408 None:intergenic 40.0%
TTCAATGTCACAGGACAAAG+AGG + chr5_2:12293414-12293433 Msa0757410:CDS 40.0%
TGGTTAAGGGCTACTGTTTA+TGG + chr5_2:12293465-12293484 Msa0757410:CDS 40.0%
AGGTTGTGGAAAAGGAAAAG+GGG - chr5_2:12293520-12293539 None:intergenic 40.0%
CAGGTTGTGGAAAAGGAAAA+GGG - chr5_2:12293521-12293540 None:intergenic 40.0%
TCAAATTCTCTAGCAGGTTG+TGG - chr5_2:12293534-12293553 None:intergenic 40.0%
TACAACCTCAATCATGGTCA+TGG - chr5_2:12293656-12293675 None:intergenic 40.0%
ATTGTGTAACAGGAGAATGG+TGG + chr5_2:12293820-12293839 Msa0757410:intron 40.0%
GTGGAAGAGATAGTAAACCA+AGG + chr5_2:12293852-12293871 Msa0757410:CDS 40.0%
AGTAAACCAAGGGAACCAAA+TGG + chr5_2:12293863-12293882 Msa0757410:CDS 40.0%
GTAAACCAAGGGAACCAAAT+GGG + chr5_2:12293864-12293883 Msa0757410:CDS 40.0%
TAAACCAAGGGAACCAAATG+GGG + chr5_2:12293865-12293884 Msa0757410:CDS 40.0%
GTATGTGCATCCGACATATT+TGG - chr5_2:12293897-12293916 None:intergenic 40.0%
TCGGATGCACATACAATCAA+TGG + chr5_2:12293903-12293922 Msa0757410:CDS 40.0%
CGGATGCACATACAATCAAT+GGG + chr5_2:12293904-12293923 Msa0757410:CDS 40.0%
TTCTTACGTTTCTCGGAACA+AGG - chr5_2:12293948-12293967 None:intergenic 40.0%
! CGTTCTTTTGCACTCACAAA+AGG - chr5_2:12294015-12294034 None:intergenic 40.0%
GCAAAAGAACGCTTATAACG+AGG + chr5_2:12294024-12294043 Msa0757410:intron 40.0%
TATGCAATGGAGGTTGAGAA+AGG + chr5_2:12294197-12294216 Msa0757410:CDS 40.0%
! GAACTTTTCTTTTCCCTTGC+TGG + chr5_2:12294263-12294282 Msa0757410:CDS 40.0%
CAATCCATTCTAATTGGTCC+TGG + chr5_2:12294341-12294360 Msa0757410:CDS 40.0%
TTGACCAGGACCAATTAGAA+TGG - chr5_2:12294348-12294367 None:intergenic 40.0%
AGAACATTTGTGGTTTGACC+AGG - chr5_2:12294362-12294381 None:intergenic 40.0%
! GTAGCAACAAAGTATCTGCT+TGG - chr5_2:12294404-12294423 None:intergenic 40.0%
!! GTTTTGTTATCAACCGAGAG+TGG - chr5_2:12294446-12294465 None:intergenic 40.0%
!! GGAAGTGTTGTAGGAAATGA+AGG - chr5_2:12294515-12294534 None:intergenic 40.0%
! CTTTGAGAGGAACATTAGCA+GGG - chr5_2:12294607-12294626 None:intergenic 40.0%
! ACTTTGAGAGGAACATTAGC+AGG - chr5_2:12294608-12294627 None:intergenic 40.0%
TCTTGTCCTACATGCATCAA+TGG + chr5_2:12294668-12294687 Msa0757410:CDS 40.0%
CAGCTCAACCGTAGAATTAA+AGG - chr5_2:12294891-12294910 None:intergenic 40.0%
CTTTAATTCTACGGTTGAGC+TGG + chr5_2:12294889-12294908 Msa0757410:CDS 40.0%
TATTTAGCAGGGTCTTTAGC+AGG - chr5_2:12295013-12295032 None:intergenic 40.0%
ATTTGGTTGATCCTATGGAG+AGG + chr5_2:12295035-12295054 Msa0757410:CDS 40.0%
ATTAGCCGTGAATCGAATTG+CGG - chr5_2:12295092-12295111 None:intergenic 40.0%
AGTTGTTGACAAGGTATACC+TGG - chr5_2:12295118-12295137 None:intergenic 40.0%
! TGTCATTTAGAGTTGCACAC+TGG + chr5_2:12295393-12295412 Msa0757410:CDS 40.0%
! ATTTAGAGTTGCACACTGGT+TGG + chr5_2:12295397-12295416 Msa0757410:CDS 40.0%
! TTTAGAGTTGCACACTGGTT+GGG + chr5_2:12295398-12295417 Msa0757410:CDS 40.0%
ATTGAAAACGGCTTTCGTTG+TGG + chr5_2:12295422-12295441 Msa0757410:CDS 40.0%
!! TAGCATTTTGGAAGGTCCTT+TGG - chr5_2:12295486-12295505 None:intergenic 40.0%
AAAGGACCTTCCAAAATGCT+AGG + chr5_2:12295485-12295504 Msa0757410:CDS 40.0%
! AACTTGCCTAGCATTTTGGA+AGG - chr5_2:12295494-12295513 None:intergenic 40.0%
GTAGCATAAATTGTTGGCCC+TGG - chr5_2:12293128-12293147 None:intergenic 45.0%
CAATGTCCAATCCAAACTGG+TGG + chr5_2:12293375-12293394 Msa0757410:CDS 45.0%
TAGCTTCCACCAGTTTGGAT+TGG - chr5_2:12293384-12293403 None:intergenic 45.0%
CAGGACAAAGAGGAACTTTG+TGG + chr5_2:12293424-12293443 Msa0757410:CDS 45.0%
GACAAAGAGGAACTTTGTGG+TGG + chr5_2:12293427-12293446 Msa0757410:CDS 45.0%
GGTGGCATGCTCATATTCTT+TGG + chr5_2:12293445-12293464 Msa0757410:CDS 45.0%
GCAGGTTGTGGAAAAGGAAA+AGG - chr5_2:12293522-12293541 None:intergenic 45.0%
TCTCTAGCAGGTTGTGGAAA+AGG - chr5_2:12293528-12293547 None:intergenic 45.0%
GATCTCCATGACCATGATTG+AGG + chr5_2:12293648-12293667 Msa0757410:intron 45.0%
AGAATGGTGGCACAAAGATG+TGG + chr5_2:12293833-12293852 Msa0757410:CDS 45.0%
! TATTTGGTGGCAACCCCATT+TGG - chr5_2:12293881-12293900 None:intergenic 45.0%
TGTGCATCCGACATATTTGG+TGG - chr5_2:12293894-12293913 None:intergenic 45.0%
CATACAATCAATGGGAAGCC+AGG + chr5_2:12293912-12293931 Msa0757410:CDS 45.0%
TTCTCGGAACAAGGAAAGAG+TGG - chr5_2:12293939-12293958 None:intergenic 45.0%
GACGGAGGTAGTACAAACTT+GGG - chr5_2:12293977-12293996 None:intergenic 45.0%
TGACGGAGGTAGTACAAACT+TGG - chr5_2:12293978-12293997 None:intergenic 45.0%
TGTCATGTTGTGACCAGCAA+GGG - chr5_2:12294279-12294298 None:intergenic 45.0%
TTTCATGGATGCACCACTCT+CGG + chr5_2:12294430-12294449 Msa0757410:CDS 45.0%
CGTGTTCCATTGATGCATGT+AGG - chr5_2:12294677-12294696 None:intergenic 45.0%
AAAGGAGCCAAAGGCTTATC+AGG - chr5_2:12294800-12294819 None:intergenic 45.0%
GGTGCGCCAGTATAGTTAAA+AGG - chr5_2:12294818-12294837 None:intergenic 45.0%
CTATGGAGAGGAACACTGTT+GGG + chr5_2:12295047-12295066 Msa0757410:CDS 45.0%
TATGGAGAGGAACACTGTTG+GGG + chr5_2:12295048-12295067 Msa0757410:CDS 45.0%
TTGGACCGCAATTCGATTCA+CGG + chr5_2:12295084-12295103 Msa0757410:CDS 45.0%
CGATTCACGGCTAATAATCC+AGG + chr5_2:12295097-12295116 Msa0757410:CDS 45.0%
! TTAGAGTTGCACACTGGTTG+GGG + chr5_2:12295399-12295418 Msa0757410:CDS 45.0%
! CACTGGTTGGGGATTGAAAA+CGG + chr5_2:12295410-12295429 Msa0757410:CDS 45.0%
ATCTGTTCTACCACCACCAA+AGG + chr5_2:12295467-12295486 Msa0757410:CDS 45.0%
!! CATTTTGGAAGGTCCTTTGG+TGG - chr5_2:12295483-12295502 None:intergenic 45.0%
!! ACAGTAAATGGGAGGTACCC+AGG + chr5_2:12293107-12293126 Msa0757410:CDS 50.0%
!! CAGTAAATGGGAGGTACCCA+GGG + chr5_2:12293108-12293127 Msa0757410:CDS 50.0%
TATCGCAATGGTTGGGCTGA+TGG + chr5_2:12293336-12293355 Msa0757410:CDS 50.0%
GGAAAAGGGGTTCCTGGTTT+AGG - chr5_2:12293507-12293526 None:intergenic 50.0%
GGAAAAGGAAAAGGGGTTCC+TGG - chr5_2:12293513-12293532 None:intergenic 50.0%
GGGGTTGCCACCAAATATGT+CGG + chr5_2:12293884-12293903 Msa0757410:CDS 50.0%
GAACAAGGAAAGAGTGGTCC+TGG - chr5_2:12293933-12293952 None:intergenic 50.0%
CTGTCATGTTGTGACCAGCA+AGG - chr5_2:12294280-12294299 None:intergenic 50.0%
!! GCTTGAAGAAGCGCGGTTTT+CGG - chr5_2:12294737-12294756 None:intergenic 50.0%
GTGATGAGCTTGAAGAAGCG+CGG - chr5_2:12294744-12294763 None:intergenic 50.0%
! CGTCTTAGTACCGAGATTGG+CGG - chr5_2:12294846-12294865 None:intergenic 50.0%
CGCCAATCTCGGTACTAAGA+CGG + chr5_2:12294844-12294863 Msa0757410:CDS 50.0%
GCCAATCTCGGTACTAAGAC+GGG + chr5_2:12294845-12294864 Msa0757410:CDS 50.0%
CCAACAGTGTTCCTCTCCAT+AGG - chr5_2:12295049-12295068 None:intergenic 50.0%
CCTATGGAGAGGAACACTGT+TGG + chr5_2:12295046-12295065 Msa0757410:CDS 50.0%
ACGGCTTTCGTTGTGGAAGA+TGG + chr5_2:12295429-12295448 Msa0757410:CDS 50.0%
CGGCTTTCGTTGTGGAAGAT+GGG + chr5_2:12295430-12295449 Msa0757410:CDS 50.0%
TTTGGAAGGTCCTTTGGTGG+TGG - chr5_2:12295480-12295499 None:intergenic 50.0%
! GCAACCCCATTTGGTTCCCT+TGG - chr5_2:12293872-12293891 None:intergenic 55.0%
GTACCGAGATTGGCGGTCAA+CGG - chr5_2:12294839-12294858 None:intergenic 55.0%
! GCCCGTCTTAGTACCGAGAT+TGG - chr5_2:12294849-12294868 None:intergenic 55.0%
AACACTGTTGGGGTCCCTAC+CGG + chr5_2:12295058-12295077 Msa0757410:CDS 55.0%
TCGAATTGCGGTCCAACCAC+CGG - chr5_2:12295080-12295099 None:intergenic 55.0%
TTCGTTGTGGAAGATGGGCC+AGG + chr5_2:12295435-12295454 Msa0757410:CDS 55.0%
GCACCGTTGACCGCCAATCT+CGG + chr5_2:12294833-12294852 Msa0757410:CDS 60.0%
TTGCGGTCCAACCACCGGTA+GGG - chr5_2:12295075-12295094 None:intergenic 60.0%
ATTGCGGTCCAACCACCGGT+AGG - chr5_2:12295076-12295095 None:intergenic 60.0%
ACTGTTGGGGTCCCTACCGG+TGG + chr5_2:12295061-12295080 Msa0757410:CDS 65.0%
TTGGGGTCCCTACCGGTGGT+TGG + chr5_2:12295065-12295084 Msa0757410:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 12292355 12295761 12292355 ID=Msa0757410;Name=Msa0757410
chr5_2 mRNA 12292355 12295761 12292355 ID=Msa0757410-mRNA-1;Parent=Msa0757410;Name=Msa0757410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=61|0.8|0.83|1|1|1|6|255|572
chr5_2 exon 12292355 12292532 12292355 ID=Msa0757410-mRNA-1:exon:5508;Parent=Msa0757410-mRNA-1
chr5_2 exon 12293059 12293210 12293059 ID=Msa0757410-mRNA-1:exon:5509;Parent=Msa0757410-mRNA-1
chr5_2 exon 12293320 12293564 12293320 ID=Msa0757410-mRNA-1:exon:5510;Parent=Msa0757410-mRNA-1
chr5_2 exon 12293832 12293978 12293832 ID=Msa0757410-mRNA-1:exon:5511;Parent=Msa0757410-mRNA-1
chr5_2 exon 12294192 12295118 12294192 ID=Msa0757410-mRNA-1:exon:5512;Parent=Msa0757410-mRNA-1
chr5_2 exon 12295376 12295761 12295376 ID=Msa0757410-mRNA-1:exon:5513;Parent=Msa0757410-mRNA-1
chr5_2 five_prime_UTR 12292355 12292415 12292355 ID=Msa0757410-mRNA-1:five_prime_utr;Parent=Msa0757410-mRNA-1
chr5_2 CDS 12292416 12292532 12292416 ID=Msa0757410-mRNA-1:cds;Parent=Msa0757410-mRNA-1
chr5_2 CDS 12293059 12293210 12293059 ID=Msa0757410-mRNA-1:cds;Parent=Msa0757410-mRNA-1
chr5_2 CDS 12293320 12293564 12293320 ID=Msa0757410-mRNA-1:cds;Parent=Msa0757410-mRNA-1
chr5_2 CDS 12293832 12293978 12293832 ID=Msa0757410-mRNA-1:cds;Parent=Msa0757410-mRNA-1
chr5_2 CDS 12294192 12295118 12294192 ID=Msa0757410-mRNA-1:cds;Parent=Msa0757410-mRNA-1
chr5_2 CDS 12295376 12295506 12295376 ID=Msa0757410-mRNA-1:cds;Parent=Msa0757410-mRNA-1
chr5_2 three_prime_UTR 12295507 12295761 12295507 ID=Msa0757410-mRNA-1:three_prime_utr;Parent=Msa0757410-mRNA-1
Gene Sequence

>Msa0757410

ATGGCTTATCATATGATGAGCTTCCGAAGTCACATATCTTTGTTAATAGTTCTTTTTGGTTTTCTTGGCTTAATCTCTTTTCCTGTTGAAGCAGCAATAAAGAAATACCAATTTGATATTCAAATGAAGAATGTGAGTAGACTATGCCATGCAAAACCAATTGTAACAGTAAATGGGAGGTACCCAGGGCCAACAATTTATGCTACAGAAGGAGATAGAGTACAAATCAATGTCACCAACCATGTAAAATATAACATATCAATTCACTGGCATGGACTTAAACAGTATCGCAATGGTTGGGCTGATGGACCAGCTTATATTACTCAATGTCCAATCCAAACTGGTGGAAGCTATACATATGACTTCAATGTCACAGGACAAAGAGGAACTTTGTGGTGGCATGCTCATATTCTTTGGTTAAGGGCTACTGTTTATGGTGCAATTGTTATCATGCCTAAACCAGGAACCCCTTTTCCTTTTCCACAACCTGCTAGAGAATTTGAACTTGTGCTAGGAGAATGGTGGCACAAAGATGTGGAAGAGATAGTAAACCAAGGGAACCAAATGGGGTTGCCACCAAATATGTCGGATGCACATACAATCAATGGGAAGCCAGGACCACTCTTTCCTTGTTCCGAGAAACGTAAGAACAATAACCCAAATACATATGCAATGGAGGTTGAGAAAGGCAAGACATATCTGCTAAGAATCATCAATGCTGCTCTTAATGATGAACTTTTCTTTTCCCTTGCTGGTCACAACATGACAGTAGTTGAAGTTGATGCAGTTTACACAAAACCATTCACAACACAATCCATTCTAATTGGTCCTGGTCAAACCACAAATGTTCTAGTCAAAGCAAACAAAATTCCAAGCAGATACTTTGTTGCTACAAGAACTTTCATGGATGCACCACTCTCGGTTGATAACAAAACTGCTACAGCTATATTCCAATACAAAGGAATTCCAAACACTATCATCCCTTCATTTCCTACAACACTTCCTAATGCAAATGACACAAACTTTGCTTTGAATTATAGCAAAAAAATAAGAAGCTTAAACTCTGCTAAATACCCTGCTAATGTTCCTCTCAAAGTTGATAGAAACCTTTTCTACACTATTGGTTTAGGCATGAATTCTTGTCCTACATGCATCAATGGAACACGTTTAGTTGCATCACTTAACAATGTAACTTTTGTGATGCCGAAAACCGCGCTTCTTCAAGCTCATCACTTTGATATCAAGGGTGTTTTTAGAACTGATTTTCCTGATAAGCCTTTGGCTCCTTTTAACTATACTGGCGCACCGTTGACCGCCAATCTCGGTACTAAGACGGGCACAAGAGTTAGCAAGATCGCCTTTAATTCTACGGTTGAGCTGGTTTTGCAAGATACTAATCTTCTCACAGTTGAATCACATCCATTTCATCTTCATGGTTATAACTTTTTTGTTGTTGGAACTGGAATTGGCAATTTTGATCCTGCTAAAGACCCTGCTAAATATAATTTGGTTGATCCTATGGAGAGGAACACTGTTGGGGTCCCTACCGGTGGTTGGACCGCAATTCGATTCACGGCTAATAATCCAGGTGTATGGTTCATGCATTGTCATTTAGAGTTGCACACTGGTTGGGGATTGAAAACGGCTTTCGTTGTGGAAGATGGGCCAGGAAAAGATCAATCTGTTCTACCACCACCAAAGGACCTTCCAAAATGCTAG
Protein sequence

>Msa0757410

MAYHMMSFRSHISLLIVLFGFLGLISFPVEAAIKKYQFDIQMKNVSRLCHAKPIVTVNGRYPGPTIYATEGDRVQINVTNHVKYNISIHWHGLKQYRNGWADGPAYITQCPIQTGGSYTYDFNVTGQRGTLWWHAHILWLRATVYGAIVIMPKPGTPFPFPQPAREFELVLGEWWHKDVEEIVNQGNQMGLPPNMSDAHTINGKPGPLFPCSEKRKNNNPNTYAMEVEKGKTYLLRIINAALNDELFFSLAGHNMTVVEVDAVYTKPFTTQSILIGPGQTTNVLVKANKIPSRYFVATRTFMDAPLSVDNKTATAIFQYKGIPNTIIPSFPTTLPNANDTNFALNYSKKIRSLNSAKYPANVPLKVDRNLFYTIGLGMNSCPTCINGTRLVASLNNVTFVMPKTALLQAHHFDIKGVFRTDFPDKPLAPFNYTGAPLTANLGTKTGTRVSKIAFNSTVELVLQDTNLLTVESHPFHLHGYNFFVVGTGIGNFDPAKDPAKYNLVDPMERNTVGVPTGGWTAIRFTANNPGVWFMHCHLELHTGWGLKTAFVVEDGPGKDQSVLPPPKDLPKC*