AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0154760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154760 MtrunA17_Chr1g0204011 98.758 322 4 0 17 338 1 322 0.0 660
Msa0154760 MtrunA17_Chr5g0405991 56.051 314 135 2 25 338 6 316 8.19e-128 368
Msa0154760 MtrunA17_Chr8g0371381 56.419 296 127 1 43 338 26 319 1.09e-124 360
Msa0154760 MtrunA17_Chr1g0157051 52.258 310 147 1 28 337 9 317 9.53e-120 348
Msa0154760 MtrunA17_Chr1g0188431 47.651 298 145 3 43 338 39 327 3.63e-94 283
Msa0154760 MtrunA17_Chr3g0128061 47.785 316 160 4 28 338 11 326 7.05e-93 280
Msa0154760 MtrunA17_Chr6g0477071 42.515 334 176 4 12 338 18 342 6.44e-91 275
Msa0154760 MtrunA17_Chr7g0268501 45.079 315 163 6 28 338 12 320 2.84e-88 268
Msa0154760 MtrunA17_Chr7g0268521 45.079 315 163 6 28 338 12 320 2.84e-88 268
Msa0154760 MtrunA17_Chr4g0013721 45.724 304 162 3 37 338 94 396 2.01e-87 269
Msa0154760 MtrunA17_Chr4g0024121 42.368 321 180 4 23 338 6 326 2.06e-87 266
Msa0154760 MtrunA17_Chr5g0402571 41.433 321 182 4 24 338 6 326 2.90e-86 263
Msa0154760 MtrunA17_Chr4g0013821 44.554 303 165 3 38 338 23 324 1.29e-85 261
Msa0154760 MtrunA17_Chr1g0197411 42.857 322 175 6 26 338 9 330 3.55e-85 260
Msa0154760 MtrunA17_Chr2g0322861 42.812 320 176 6 24 338 69 386 4.93e-84 259
Msa0154760 MtrunA17_Chr5g0402581 39.875 321 187 4 24 338 6 326 5.99e-83 254
Msa0154760 MtrunA17_Chr1g0194151 44.012 334 177 8 14 338 1 333 2.73e-82 253
Msa0154760 MtrunA17_Chr3g0106921 39.752 322 180 5 24 338 6 320 3.31e-82 252
Msa0154760 MtrunA17_Chr5g0432331 45.253 316 156 10 32 338 45 352 7.54e-82 252
Msa0154760 MtrunA17_Chr4g0070951 41.796 323 173 8 26 338 12 329 1.01e-81 251
Msa0154760 MtrunA17_Chr2g0292271 42.453 318 175 5 28 338 14 330 1.85e-81 251
Msa0154760 MtrunA17_Chr5g0401431 42.424 330 175 9 21 337 1 328 2.11e-81 250
Msa0154760 MtrunA17_Chr5g0432351 45.031 322 158 11 28 338 8 321 3.98e-81 249
Msa0154760 MtrunA17_Chr3g0129051 41.033 329 180 6 17 338 1 322 8.70e-81 248
Msa0154760 MtrunA17_Chr4g0068621 44.300 307 164 6 37 338 32 336 8.85e-81 249
Msa0154760 MtrunA17_Chr8g0364291 40.635 315 181 4 30 338 10 324 1.13e-80 248
Msa0154760 MtrunA17_Chr2g0279041 40.741 324 177 5 26 338 6 325 1.25e-80 248
Msa0154760 MtrunA17_Chr1g0175561 38.838 327 191 6 20 338 1 326 1.27e-80 248
Msa0154760 MtrunA17_Chr6g0451571 44.062 320 167 7 29 338 17 334 2.68e-80 248
Msa0154760 MtrunA17_Chr5g0404721 42.715 302 166 5 43 338 30 330 4.30e-80 247
Msa0154760 MtrunA17_Chr2g0299691 42.769 325 166 9 30 338 38 358 6.48e-80 248
Msa0154760 MtrunA17_Chr5g0432341 44.410 322 160 11 28 338 8 321 1.33e-79 246
Msa0154760 MtrunA17_Chr2g0291751 41.640 317 179 4 28 338 14 330 1.59e-79 246
Msa0154760 MtrunA17_Chr2g0292211 42.587 317 176 4 28 338 25 341 1.89e-79 246
Msa0154760 MtrunA17_Chr8g0372601 43.234 303 163 7 43 338 30 330 3.04e-79 245
Msa0154760 MtrunA17_Chr3g0114451 41.250 320 170 5 30 338 6 318 5.42e-79 244
Msa0154760 MtrunA17_Chr2g0320071 40.062 322 178 5 25 338 3 317 9.75e-79 243
Msa0154760 MtrunA17_Chr1g0194271 42.815 341 178 7 14 338 1 340 1.91e-78 243
Msa0154760 MtrunA17_Chr7g0225221 42.006 319 173 7 26 338 8 320 3.79e-78 242
Msa0154760 MtrunA17_Chr4g0013181 43.478 299 156 6 46 338 62 353 5.65e-78 242
Msa0154760 MtrunA17_Chr2g0320091 40.867 323 175 6 25 338 3 318 8.21e-78 241
Msa0154760 MtrunA17_Chr2g0292091 38.941 321 190 4 24 338 5 325 8.54e-78 241
Msa0154760 MtrunA17_Chr7g0258811 38.592 355 192 9 9 338 18 371 2.52e-77 241
Msa0154760 MtrunA17_Chr4g0013171 42.904 303 158 8 43 338 27 321 5.36e-77 239
Msa0154760 MtrunA17_Chr1g0164891 45.183 301 155 8 47 338 93 392 6.82e-77 241
Msa0154760 MtrunA17_Chr2g0320101 39.752 322 179 5 25 338 3 317 1.56e-76 238
Msa0154760 MtrunA17_Chr1g0148021 41.956 317 176 5 29 338 13 328 1.66e-76 238
Msa0154760 MtrunA17_Chr2g0292241 42.157 306 171 4 39 338 25 330 2.36e-76 238
Msa0154760 MtrunA17_Chr2g0292251 42.020 307 170 5 39 338 24 329 3.02e-76 238
Msa0154760 MtrunA17_Chr5g0400331 43.260 319 164 9 34 338 16 331 3.78e-76 237
Msa0154760 MtrunA17_Chr5g0432441 40.625 320 172 8 28 338 16 326 3.80e-76 237
Msa0154760 MtrunA17_Chr1g0155611 44.371 302 162 5 43 338 46 347 4.28e-76 237
Msa0154760 MtrunA17_Chr7g0254201 41.694 307 164 6 38 338 15 312 5.62e-76 236
Msa0154760 MtrunA17_Chr6g0460711 39.490 314 182 5 28 338 6 314 9.88e-76 235
Msa0154760 MtrunA17_Chr3g0106901 40.061 327 185 4 16 338 4 323 1.85e-75 235
Msa0154760 MtrunA17_Chr2g0292181 42.157 306 171 4 39 338 34 339 2.11e-75 236
Msa0154760 MtrunA17_Chr2g0292111 40.523 306 176 4 39 338 25 330 2.73e-75 236
Msa0154760 MtrunA17_Chr3g0129041 42.121 330 175 7 17 338 1 322 2.92e-75 234
Msa0154760 MtrunA17_Chr2g0320061 39.506 324 178 8 25 338 3 318 4.85e-75 234
Msa0154760 MtrunA17_Chr1g0213061 41.875 320 171 7 26 338 10 321 6.25e-75 234
Msa0154760 MtrunA17_Chr5g0438021 40.683 322 171 7 29 338 12 325 7.60e-75 233
Msa0154760 MtrunA17_Chr7g0244461 39.938 323 178 6 21 338 1 312 1.08e-74 233
Msa0154760 MtrunA17_Chr4g0013201 40.584 308 172 4 35 338 38 338 1.62e-74 233
Msa0154760 MtrunA17_Chr3g0129061 41.824 318 168 7 29 338 14 322 5.84e-74 231
Msa0154760 MtrunA17_Chr3g0107881 41.231 325 175 9 23 338 7 324 6.07e-74 231
Msa0154760 MtrunA17_Chr4g0053871 42.951 305 160 7 41 337 25 323 6.56e-74 231
Msa0154760 MtrunA17_Chr7g0254231 40.333 300 169 3 41 338 20 311 7.83e-74 230
Msa0154760 MtrunA17_Chr4g0043391 40.000 325 177 7 26 338 6 324 1.26e-73 230
Msa0154760 MtrunA17_Chr4g0063671 39.748 317 180 5 30 338 7 320 1.28e-73 230
Msa0154760 MtrunA17_Chr2g0292151 41.176 306 174 4 39 338 25 330 2.19e-73 231
Msa0154760 MtrunA17_Chr2g0320031 38.272 324 183 6 25 338 3 319 5.33e-73 228
Msa0154760 MtrunA17_Chr4g0046131 39.735 302 173 5 42 334 41 342 5.38e-73 229
Msa0154760 MtrunA17_Chr2g0292101 40.789 304 174 4 41 338 23 326 1.81e-72 228
Msa0154760 MtrunA17_Chr4g0038171 40.000 310 172 6 37 338 18 321 1.96e-72 227
Msa0154760 MtrunA17_Chr2g0320051 39.198 324 179 8 25 338 3 318 2.59e-72 227
Msa0154760 MtrunA17_Chr2g0292261 39.542 306 179 4 39 338 25 330 9.49e-72 226
Msa0154760 MtrunA17_Chr4g0038161 39.623 318 177 6 29 338 10 320 1.20e-71 225
Msa0154760 MtrunA17_Chr5g0421411 42.553 282 149 8 68 338 6 285 3.66e-70 220
Msa0154760 MtrunA17_Chr7g0244451 39.683 315 176 6 29 338 11 316 3.73e-70 221
Msa0154760 MtrunA17_Chr2g0292291 40.584 308 174 6 39 338 26 332 4.01e-70 222
Msa0154760 MtrunA17_Chr4g0013191 40.924 303 169 6 41 338 43 340 6.59e-70 221
Msa0154760 MtrunA17_Chr4g0076211 40.678 295 166 3 47 338 45 333 9.19e-70 221
Msa0154760 MtrunA17_Chr4g0038151 39.869 306 169 7 41 338 23 321 1.00e-69 220
Msa0154760 MtrunA17_Chr7g0224371 40.741 297 162 7 47 338 35 322 1.77e-69 219
Msa0154760 MtrunA17_Chr4g0072091 40.667 300 168 5 42 334 23 319 3.92e-69 219
Msa0154760 MtrunA17_Chr3g0136751 39.185 319 182 5 29 338 7 322 1.55e-68 217
Msa0154760 MtrunA17_Chr4g0075241 36.280 328 195 8 19 338 6 327 5.73e-68 216
Msa0154760 MtrunA17_Chr2g0279061 43.798 258 136 3 87 338 12 266 4.13e-67 211
Msa0154760 MtrunA17_Chr2g0296621 38.926 298 166 5 47 338 54 341 2.63e-66 212
Msa0154760 MtrunA17_Chr6g0467161 34.604 341 197 7 16 338 4 336 7.30e-66 211
Msa0154760 MtrunA17_Chr2g0329641 36.795 337 197 7 13 338 4 335 1.03e-65 210
Msa0154760 MtrunA17_Chr6g0467121 38.820 322 172 7 31 338 53 363 4.42e-65 210
Msa0154760 MtrunA17_Chr2g0278671 36.688 308 183 6 39 338 20 323 4.13e-63 203
Msa0154760 MtrunA17_Chr2g0316481 36.000 350 186 7 20 334 56 402 2.95e-62 204
Msa0154760 MtrunA17_Chr2g0316831 35.429 350 188 7 20 334 92 438 5.09e-61 201
Msa0154760 MtrunA17_Chr5g0413051 36.364 308 187 6 40 338 70 377 7.64e-61 199
Msa0154760 MtrunA17_Chr2g0316791 35.143 350 189 7 20 334 56 402 9.55e-61 199
Msa0154760 MtrunA17_Chr2g0316191 34.473 351 191 7 20 334 56 403 6.10e-59 195
Msa0154760 MtrunA17_Chr5g0432401 37.037 324 142 9 29 337 9 285 1.08e-57 188
Msa0154760 MtrunA17_Chr1g0181511 34.754 305 188 4 40 338 24 323 2.22e-57 188
Msa0154760 MtrunA17_Chr4g0074851 34.921 315 193 5 31 338 19 328 2.95e-57 188
Msa0154760 MtrunA17_Chr2g0311251 35.015 337 174 10 41 337 9 340 1.61e-55 184
Msa0154760 MtrunA17_Chr6g0467251 34.139 331 198 5 17 334 1 324 3.28e-55 184
Msa0154760 MtrunA17_Chr1g0181431 34.211 304 189 4 41 338 25 323 2.22e-54 181
Msa0154760 MtrunA17_Chr1g0181481 34.098 305 190 4 40 338 24 323 3.31e-53 177
Msa0154760 MtrunA17_Chr2g0311241 30.933 375 181 7 41 338 58 431 1.98e-52 179
Msa0154760 MtrunA17_Chr4g0004591 32.075 318 154 5 43 337 77 355 1.31e-47 164
Msa0154760 MtrunA17_Chr2g0316811 33.730 252 146 5 20 253 30 278 3.34e-42 149
Msa0154760 MtrunA17_Chr2g0292281 40.183 219 114 6 126 338 9 216 1.72e-41 144
Msa0154760 MtrunA17_Chr2g0316141 33.101 287 137 8 89 338 11 279 3.01e-36 132
Msa0154760 MtrunA17_Chr2g0316181 33.101 287 137 8 89 338 11 279 3.01e-36 132
Msa0154760 MtrunA17_Chr3g0114461 38.000 200 112 6 143 338 1 192 8.48e-36 128
Msa0154760 MtrunA17_Chr3g0114491 49.541 109 54 1 42 149 17 125 4.83e-29 108
Msa0154760 MtrunA17_Chr5g0432321 40.323 124 65 3 163 285 17 132 3.43e-23 93.2
Msa0154760 MtrunA17_Chr6g0468731 58.571 70 26 1 82 151 22 88 2.37e-22 89.7
Msa0154760 MtrunA17_Chr1g0181501 30.729 192 121 5 153 338 4 189 1.11e-21 90.9
Msa0154760 MtrunA17_Chr3g0104101 38.194 144 76 6 205 338 9 149 3.55e-21 88.6
Msa0154760 MtrunA17_Chr7g0254181 45.631 103 54 1 105 207 22 122 1.76e-20 86.7
Msa0154760 MtrunA17_Chr1g0181491 37.607 117 72 1 35 151 4 119 2.07e-19 83.6
Msa0154760 MtrunA17_Chr7g0254171 47.222 72 38 0 88 159 3 74 3.60e-16 74.3
Msa0154760 MtrunA17_Chr2g0316771 30.114 176 91 3 191 334 7 182 6.21e-16 75.1
Msa0154760 MtrunA17_Chr1g0196191 53.030 66 31 0 85 150 27 92 9.85e-15 70.9
Msa0154760 MtrunA17_Chr4g0013811 43.243 74 41 1 152 224 5 78 1.48e-13 65.5
Msa0154760 MtrunA17_Chr7g0268491 43.750 80 40 3 262 338 20 97 9.86e-13 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154760 AT5G51890.1 69.108 314 96 1 26 338 9 322 3.62e-166 466
Msa0154760 AT5G42180.1 55.380 316 138 2 24 337 2 316 8.86e-124 358
Msa0154760 AT4G33420.1 45.566 327 165 5 16 338 8 325 5.36e-91 275
Msa0154760 AT4G33420.2 45.566 327 165 5 16 338 55 372 2.35e-90 275
Msa0154760 AT3G01190.1 43.450 313 171 5 29 338 12 321 4.66e-88 267
Msa0154760 AT4G16270.1 47.279 294 152 3 48 338 55 348 2.50e-87 266
Msa0154760 AT1G05260.1 43.987 316 171 5 28 338 11 325 4.06e-87 265
Msa0154760 AT5G19890.1 43.260 319 167 4 31 338 12 327 4.42e-87 265
Msa0154760 AT4G11290.1 43.711 318 171 6 28 338 10 326 5.65e-85 259
Msa0154760 AT5G15180.1 42.667 300 166 5 43 338 32 329 5.81e-85 260
Msa0154760 AT3G21770.1 43.234 303 166 5 39 336 25 326 4.66e-84 258
Msa0154760 AT2G22420.1 42.902 317 176 4 26 338 4 319 6.17e-84 257
Msa0154760 AT4G36430.1 43.092 304 166 5 41 338 28 330 6.86e-84 257
Msa0154760 AT5G06720.1 40.881 318 180 5 28 338 17 333 1.00e-82 254
Msa0154760 AT5G06730.1 40.881 318 180 5 28 338 18 334 4.25e-82 253
Msa0154760 AT5G66390.1 43.791 306 165 6 39 338 29 333 1.69e-81 251
Msa0154760 AT5G14130.1 43.492 315 169 6 30 338 19 330 4.19e-81 250
Msa0154760 AT1G05240.1 42.715 302 165 5 43 338 26 325 5.08e-81 249
Msa0154760 AT1G05250.1 42.715 302 165 5 43 338 26 325 5.08e-81 249
Msa0154760 AT4G17690.1 44.625 307 159 6 34 334 17 318 6.43e-81 249
Msa0154760 AT5G14130.2 43.492 315 169 6 30 338 60 371 1.50e-80 250
Msa0154760 AT5G40150.1 43.322 307 161 6 39 338 28 328 1.01e-79 246
Msa0154760 AT3G50990.1 42.500 320 176 6 26 338 23 341 1.33e-79 246
Msa0154760 AT2G18150.1 40.656 305 174 5 40 338 33 336 2.12e-79 246
Msa0154760 AT1G44970.1 42.763 304 168 5 41 338 43 346 1.06e-78 244
Msa0154760 AT5G05340.1 41.830 306 163 6 40 338 27 324 1.25e-78 243
Msa0154760 AT5G17820.1 40.506 316 176 5 26 338 7 313 2.09e-78 243
Msa0154760 AT5G17820.2 39.450 327 186 5 15 338 49 366 5.43e-78 243
Msa0154760 AT3G28200.1 41.503 306 167 5 39 338 17 316 6.20e-78 241
Msa0154760 AT4G08770.1 43.269 312 165 6 37 338 18 327 1.52e-77 241
Msa0154760 AT2G38380.1 42.857 308 167 6 39 338 27 333 2.43e-77 241
Msa0154760 AT1G71695.1 42.715 302 161 5 43 338 44 339 2.97e-77 241
Msa0154760 AT4G31760.1 39.308 318 179 5 29 338 15 326 1.18e-76 238
Msa0154760 AT3G49960.1 42.633 319 173 7 29 338 12 329 1.42e-76 238
Msa0154760 AT4G08780.1 42.308 312 168 6 37 338 18 327 1.91e-76 239
Msa0154760 AT2G18140.1 40.129 309 178 5 36 338 28 335 2.08e-76 238
Msa0154760 AT5G47000.1 41.562 320 174 6 24 334 11 326 2.58e-76 238
Msa0154760 AT3G03670.1 38.994 318 189 3 25 338 5 321 2.77e-76 237
Msa0154760 AT4G26010.1 41.270 315 169 7 28 338 7 309 4.41e-76 236
Msa0154760 AT4G26010.2 40.549 328 174 8 15 338 27 337 4.52e-76 237
Msa0154760 AT3G32980.1 42.258 310 171 5 37 338 25 334 6.62e-76 237
Msa0154760 AT2G38390.1 41.883 308 170 6 39 338 27 333 8.57e-76 237
Msa0154760 AT4G37530.1 40.968 310 176 4 36 338 20 329 1.44e-75 236
Msa0154760 AT5G64120.1 41.837 294 165 3 47 338 39 328 1.61e-75 236
Msa0154760 AT3G49120.1 42.903 310 169 5 37 338 26 335 3.19e-75 236
Msa0154760 AT5G58390.1 40.439 319 174 7 28 338 6 316 8.35e-75 233
Msa0154760 AT1G68850.1 39.521 334 177 9 28 338 4 335 1.24e-74 234
Msa0154760 AT2G24800.1 42.763 304 165 5 41 338 29 329 2.29e-74 233
Msa0154760 AT2G41480.1 41.776 304 165 6 43 338 29 328 3.61e-74 232
Msa0154760 AT2G18980.1 40.123 324 182 6 23 338 4 323 9.25e-74 231
Msa0154760 AT5G67400.1 42.395 309 167 7 39 338 23 329 4.00e-73 229
Msa0154760 AT3G49110.1 41.613 310 173 5 37 338 27 336 7.55e-73 229
Msa0154760 AT1G14550.1 41.562 320 171 8 28 338 9 321 8.15e-73 228
Msa0154760 AT4G33870.1 36.919 344 178 6 30 334 54 397 1.53e-72 230
Msa0154760 AT2G34060.1 39.803 304 174 5 42 336 41 344 2.12e-72 228
Msa0154760 AT5G58400.1 38.820 322 179 8 26 338 13 325 2.10e-71 225
Msa0154760 AT5G19880.1 40.123 324 184 7 25 338 6 329 2.34e-71 225
Msa0154760 AT1G34510.1 39.172 314 175 6 29 338 8 309 1.00e-70 223
Msa0154760 AT1G49570.1 40.066 302 172 6 41 334 46 346 1.08e-70 224
Msa0154760 AT4G37520.1 39.672 305 177 4 41 338 25 329 3.79e-70 222
Msa0154760 AT2G35380.1 40.728 302 169 6 47 338 34 335 6.55e-70 221
Msa0154760 AT2G39040.1 40.777 309 172 7 40 338 43 350 1.15e-69 221
Msa0154760 AT1G14540.1 38.245 319 184 6 26 338 4 315 1.78e-69 219
Msa0154760 AT4G30170.1 38.689 305 176 5 41 338 25 325 1.48e-68 218
Msa0154760 AT5G39580.1 38.558 319 186 7 25 338 6 319 1.06e-67 215
Msa0154760 AT4G37520.2 39.344 305 175 5 41 338 25 326 2.03e-67 215
Msa0154760 AT1G30870.1 39.145 304 168 6 43 338 51 345 4.59e-67 214
Msa0154760 AT1G24110.1 37.975 316 189 5 29 338 8 322 5.40e-67 214
Msa0154760 AT4G37530.2 42.586 263 146 3 36 293 20 282 4.64e-66 210
Msa0154760 AT5G64100.1 39.000 300 172 5 44 338 38 331 2.67e-65 209
Msa0154760 AT5G64110.1 41.275 298 164 7 47 338 38 330 2.79e-65 209
Msa0154760 AT4G25980.1 35.220 318 195 5 29 338 12 326 1.86e-64 207
Msa0154760 AT5G22410.1 34.862 327 188 8 24 335 6 322 6.93e-64 206
Msa0154760 AT3G17070.1 35.948 306 182 7 43 338 38 339 9.06e-62 201
Msa0154760 AT1G77100.1 35.826 321 190 7 26 338 7 319 2.65e-59 194
Msa0154760 AT2G43480.1 35.599 309 186 6 39 338 31 335 9.10e-59 192
Msa0154760 AT4G21960.1 35.714 308 187 4 37 338 25 327 5.40e-58 191
Msa0154760 AT5G24070.1 34.821 336 193 8 24 338 5 335 8.22e-58 190
Msa0154760 AT2G37130.1 35.256 312 190 5 34 338 21 327 9.63e-56 184
Msa0154760 AT2G37130.2 35.333 300 182 5 46 338 2 296 5.03e-53 177
Msa0154760 AT2G35380.2 40.408 245 136 6 104 338 3 247 8.54e-49 164
Msa0154760 AT4G25980.2 38.785 214 113 3 34 231 62 273 5.90e-47 160
Msa0154760 AT3G17070.2 34.266 286 168 9 63 338 1 276 3.38e-46 158
Msa0154760 AT5G39580.2 41.146 192 109 2 25 215 6 194 1.78e-44 152
Msa0154760 AT2G24800.2 45.665 173 88 3 41 212 29 196 1.56e-42 148
Msa0154760 AT3G42570.1 35.238 105 66 1 104 206 43 147 5.26e-13 66.2

Find 97 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGATGTCGATTTAATATT+TGG 0.083993 1_4:-19535148 None:intergenic
TCTGCGTAGTCTTTAAGTTT+TGG 0.229493 1_4:-19535305 None:intergenic
AAAATACGGGCTGGGACTTT+TGG 0.229987 1_4:-19533637 None:intergenic
AAAGATATGGTGACTTTATC+TGG 0.249055 1_4:+19534530 Msa0154760:CDS
CTCACATTGTTCTTCCTTTG+AGG 0.255401 1_4:+19534571 Msa0154760:CDS
TATTCCATGTTGACGGCCTT+CGG 0.289036 1_4:+19535232 Msa0154760:three_prime_UTR
CCAGGAACTGTCCTGCGTTT+TGG 0.289159 1_4:-19534694 None:intergenic
AAGTCTCACTTCTCCATTAT+CGG 0.305966 1_4:-19534909 None:intergenic
TTCAATTCTATGAATGATTA+CGG 0.317662 1_4:+19535260 Msa0154760:three_prime_UTR
AATGATCGAACTGAGATATT+AGG 0.321061 1_4:-19533864 None:intergenic
CCAAAACGCAGGACAGTTCC+TGG 0.338284 1_4:+19534694 Msa0154760:CDS
AGCTTTGCTAAGAGAGGGTT+GGG 0.350687 1_4:+19534503 Msa0154760:CDS
CATTTACCATTCTTGATATG+AGG 0.364679 1_4:-19535076 None:intergenic
CCATATTGGAAAGTACTAAA+AGG 0.374080 1_4:+19534398 Msa0154760:CDS
AATCTAAGAGGCTCCGATAA+TGG 0.377790 1_4:+19534896 Msa0154760:CDS
AGCTAAAGCAAAGCTTGAAT+TGG 0.379670 1_4:+19533902 Msa0154760:CDS
ATTCCATGTTGACGGCCTTC+GGG 0.380519 1_4:+19535233 Msa0154760:three_prime_UTR
GACAGTCTGGAGGTCCATAT+TGG 0.388021 1_4:+19534384 Msa0154760:intron
GTCTTTCTCTGCTTGGTTAG+TGG 0.398136 1_4:-19533835 None:intergenic
CTATTACCTGGTTTATCAAA+TGG 0.400480 1_4:+19533456 Msa0154760:CDS
TGACCAAACATGTCCACAAT+TGG 0.401881 1_4:+19533570 Msa0154760:CDS
AGCCTTCTATTCCATGTTGA+CGG 0.403306 1_4:+19535225 Msa0154760:three_prime_UTR
GTTGGCCTACATTCAAGGTT+GGG 0.404646 1_4:-19534472 None:intergenic
TCTTCCGATCAGTCACTTGT+TGG 0.406067 1_4:+19534782 Msa0154760:CDS
GGCCGTCAACATGGAATAGA+AGG 0.408200 1_4:-19535227 None:intergenic
GAGAAGTGAGACTTAATTGC+AGG 0.408777 1_4:+19534918 Msa0154760:CDS
CTTCCATGACTGTTTCATAA+GGG 0.409975 1_4:+19533669 Msa0154760:CDS
TCTTCCATGACTGTTTCATA+AGG 0.417437 1_4:+19533668 Msa0154760:CDS
AATGAGTTGGCCTACATTCA+AGG 0.421076 1_4:-19534477 None:intergenic
GAGGGCCGTCTTTCTCTGCT+TGG 0.432126 1_4:-19533842 None:intergenic
TCAATTCTATGAATGATTAC+GGG 0.436272 1_4:+19535261 Msa0154760:three_prime_UTR
ATGTGATGCATCAGTGTTGC+TGG 0.436794 1_4:+19533803 Msa0154760:CDS
ATGGGCATGAAGTTCAGCTT+TGG 0.440243 1_4:-19533542 None:intergenic
GGAAGAACATCCTCAAAATA+CGG 0.446099 1_4:-19533651 None:intergenic
ACATGTTTGGTCATAGTAAT+GGG 0.452448 1_4:-19533560 None:intergenic
TGTCCAATTGTGGACATGTT+TGG 0.453516 1_4:-19533573 None:intergenic
CAAGGTTGGGGCTGGTAAGT+TGG 0.465173 1_4:-19534459 None:intergenic
TCAGCACAAGAAACAATGCC+TGG 0.469419 1_4:-19533930 None:intergenic
CCTACATTCAAGGTTGGGGC+TGG 0.480478 1_4:-19534467 None:intergenic
TTGGCCTACATTCAAGGTTG+GGG 0.486625 1_4:-19534471 None:intergenic
GAGCTTTGCTAAGAGAGGGT+TGG 0.490396 1_4:+19534502 Msa0154760:CDS
GAGAACTGTAAAATGAGGAT+TGG 0.494268 1_4:-19533430 None:intergenic
AACATCCTCAAAATACGGGC+TGG 0.495747 1_4:-19533646 None:intergenic
AAACAACTGCTAGCTGGAAA+AGG 0.497283 1_4:+19534752 Msa0154760:CDS
TATTACAAACAACTGCTAGC+TGG 0.500242 1_4:+19534746 Msa0154760:CDS
AGGGTTGGGAGTTAAAGATA+TGG 0.501982 1_4:+19534517 Msa0154760:CDS
TGTATACCTCATATCAAGAA+TGG 0.505829 1_4:+19535070 Msa0154760:three_prime_UTR
AAGCTTGAATTGGCTTGCCC+AGG 0.507178 1_4:+19533912 Msa0154760:CDS
GTACTAAAAGGACGGAAAGA+TGG 0.509250 1_4:+19534410 Msa0154760:CDS
AGTTGGCCTACATTCAAGGT+TGG 0.511821 1_4:-19534473 None:intergenic
TTTATCTGGAGGACACACTC+TGG 0.512594 1_4:+19534544 Msa0154760:CDS
AGCAAGAGATGTGGTTGCCA+TGG 0.519204 1_4:+19533968 Msa0154760:CDS
TTGGTGATTACAGAACTAGA+TGG 0.519606 1_4:+19534801 Msa0154760:CDS
ATATTGTAAAGAAGAGGAAA+AGG 0.524688 1_4:-19533510 None:intergenic
TTCAGAGCTTTGCTAAGAGA+GGG 0.532283 1_4:+19534498 Msa0154760:CDS
GATCGAACTGAGATATTAGG+AGG 0.532320 1_4:-19533861 None:intergenic
ACAGTTCTCGAGCTATTACC+TGG 0.533419 1_4:+19533444 Msa0154760:CDS
TACATTTATTTCAACATGAG+TGG 0.534739 1_4:-19535039 None:intergenic
TTATCTGGAGGACACACTCT+GGG 0.536646 1_4:+19534545 Msa0154760:CDS
GGTTGGGGCTGGTAAGTTGG+CGG 0.537926 1_4:-19534456 None:intergenic
AGCTCGAGAACTGTAAAATG+AGG 0.542145 1_4:-19533435 None:intergenic
GACATGTTTGGTCATAGTAA+TGG 0.542302 1_4:-19533561 None:intergenic
TTGAAACTCGGAAATCTAAG+AGG 0.544657 1_4:+19534884 Msa0154760:CDS
ACACTGATGCTGTTGAGTCC+AGG 0.545026 1_4:-19534712 None:intergenic
GTAAAGAAGAGGAAAAGGAT+TGG 0.545808 1_4:-19533505 None:intergenic
GGACAAAATCATTTCAGAGA+CGG 0.552916 1_4:+19533591 Msa0154760:CDS
TAGCAAAGCTCTGAATGAGT+TGG 0.558089 1_4:-19534490 None:intergenic
ATTCAGAGCTTTGCTAAGAG+AGG 0.558792 1_4:+19534497 Msa0154760:CDS
TGGCCCGAAGGCCGTCAACA+TGG 0.562533 1_4:-19535236 None:intergenic
ATGTAAATATTGTAAAGAAG+AGG 0.564615 1_4:-19533516 None:intergenic
ATTATGTAGACGAGCCTCAA+AGG 0.566429 1_4:-19534585 None:intergenic
GAAGAACATCCTCAAAATAC+GGG 0.568324 1_4:-19533650 None:intergenic
ATCACCAACAAGTGACTGAT+CGG 0.569573 1_4:-19534786 None:intergenic
AATCATTCATAGAATTGAAG+TGG 0.574000 1_4:-19535256 None:intergenic
CCAGCCCCAACCTTGAATGT+AGG 0.575023 1_4:+19534467 Msa0154760:CDS
GCAGCTTCAATGTTGAAACT+CGG 0.579318 1_4:+19534872 Msa0154760:CDS
TAAAAGGACGGAAAGATGGA+AGG 0.581132 1_4:+19534414 Msa0154760:CDS
ACATCCTCAAAATACGGGCT+GGG 0.585381 1_4:-19533645 None:intergenic
GAAGAGGAAAAGGATTGGAA+AGG 0.589129 1_4:-19533500 None:intergenic
CAAATTCAGTGTTCAACCGT+GGG 0.598938 1_4:-19534631 None:intergenic
AAAAGGACGGAAAGATGGAA+GGG 0.602051 1_4:+19534415 Msa0154760:CDS
ATTGGAAAGTACTAAAAGGA+CGG 0.617043 1_4:+19534402 Msa0154760:CDS
GAAAGATGGAAGGGTATCAA+AGG 0.620383 1_4:+19534424 Msa0154760:CDS
CAGCACAAGAAACAATGCCT+GGG 0.620896 1_4:-19533929 None:intergenic
CTGTTCATGACACTGACCCA+CGG 0.625549 1_4:+19534615 Msa0154760:CDS
TATTTGCTCTGACAGTCTGG+AGG 0.625944 1_4:+19534374 Msa0154760:intron
CCAAACAACAACCAAAACGC+AGG 0.627767 1_4:+19534683 Msa0154760:CDS
ATACCCTTATGAAACAGTCA+TGG 0.637915 1_4:-19533672 None:intergenic
AGAAGTGAGACTTAATTGCA+GGG 0.639340 1_4:+19534919 Msa0154760:CDS
GAGGAGCCATTTGATAAACC+AGG 0.641043 1_4:-19533462 None:intergenic
GCAAATTCAGTGTTCAACCG+TGG 0.641287 1_4:-19534632 None:intergenic
ACTAACCAAGCAGAGAAAGA+CGG 0.648493 1_4:+19533837 Msa0154760:CDS
AATATCGTATATAATTGTAG+TGG 0.651415 1_4:-19534998 None:intergenic
ATAGAATTGAAGTGGCCCGA+AGG 0.657478 1_4:-19535248 None:intergenic
CATTTGTGCACAATAGCATG+AGG 0.660144 1_4:+19535108 Msa0154760:three_prime_UTR
ATCGAACTGAGATATTAGGA+GGG 0.667185 1_4:-19533860 None:intergenic
GATATGGTGACTTTATCTGG+AGG 0.710527 1_4:+19534533 Msa0154760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTAAATATTGTAAAGAAG+AGG - chr1_4:19533519-19533538 None:intergenic 20.0%
!! AATGATTAATGTTCAATGAT+AGG + chr1_4:19533779-19533798 Msa0154760:intron 20.0%
!! ATGATTAATGTTCAATGATA+GGG + chr1_4:19533780-19533799 Msa0154760:intron 20.0%
!! GATACAATTATTGGATAAAA+TGG - chr1_4:19534050-19534069 None:intergenic 20.0%
!! TAGCTTAGATAAAATTTCTT+TGG - chr1_4:19534306-19534325 None:intergenic 20.0%
!! AATATCGTATATAATTGTAG+TGG - chr1_4:19535001-19535020 None:intergenic 20.0%
!!! TTTGATGTCGATTTAATATT+TGG - chr1_4:19535151-19535170 None:intergenic 20.0%
!!! TTCTTTCATTTTCTTATCAA+GGG + chr1_4:19535186-19535205 Msa0154760:three_prime_UTR 20.0%
!! TTCAATTCTATGAATGATTA+CGG + chr1_4:19535260-19535279 Msa0154760:three_prime_UTR 20.0%
!! ATGTAAATATTGTAAAGAAG+AGG - chr1_4:19533519-19533538 None:intergenic 20.0%
!! AATGATTAATGTTCAATGAT+AGG + chr1_4:19533779-19533798 Msa0154760:intron 20.0%
!! ATGATTAATGTTCAATGATA+GGG + chr1_4:19533780-19533799 Msa0154760:intron 20.0%
!! GATACAATTATTGGATAAAA+TGG - chr1_4:19534050-19534069 None:intergenic 20.0%
!! TAGCTTAGATAAAATTTCTT+TGG - chr1_4:19534306-19534325 None:intergenic 20.0%
!! AATATCGTATATAATTGTAG+TGG - chr1_4:19535001-19535020 None:intergenic 20.0%
!!! TTTGATGTCGATTTAATATT+TGG - chr1_4:19535151-19535170 None:intergenic 20.0%
!!! TTCTTTCATTTTCTTATCAA+GGG + chr1_4:19535186-19535205 Msa0154760:three_prime_UTR 20.0%
!! TTCAATTCTATGAATGATTA+CGG + chr1_4:19535260-19535279 Msa0154760:three_prime_UTR 20.0%
! ATATTGTAAAGAAGAGGAAA+AGG - chr1_4:19533513-19533532 None:intergenic 25.0%
!!! CGTATAGTTTTTTTTACCAA+TGG + chr1_4:19533742-19533761 Msa0154760:intron 25.0%
! TTAGAAGATTACAAATCCAT+TGG - chr1_4:19533761-19533780 None:intergenic 25.0%
! TCTTTAGATAGATATTACCA+TGG - chr1_4:19533988-19534007 None:intergenic 25.0%
!!! AGAAGTATCAAAATTTTAGC+AGG - chr1_4:19534021-19534040 None:intergenic 25.0%
!!! GCTAAAATTTTGATACTTCT+AGG + chr1_4:19534021-19534040 Msa0154760:intron 25.0%
! ATCTAAGCTATTTAGTATAC+TGG + chr1_4:19534316-19534335 Msa0154760:intron 25.0%
! TCTAAGCTATTTAGTATACT+GGG + chr1_4:19534317-19534336 Msa0154760:intron 25.0%
! TACATTTATTTCAACATGAG+TGG - chr1_4:19535042-19535061 None:intergenic 25.0%
!! CTTCTTTCATTTTCTTATCA+AGG + chr1_4:19535185-19535204 Msa0154760:three_prime_UTR 25.0%
! AATCATTCATAGAATTGAAG+TGG - chr1_4:19535259-19535278 None:intergenic 25.0%
! TCAATTCTATGAATGATTAC+GGG + chr1_4:19535261-19535280 Msa0154760:three_prime_UTR 25.0%
! ATATTGTAAAGAAGAGGAAA+AGG - chr1_4:19533513-19533532 None:intergenic 25.0%
!!! CGTATAGTTTTTTTTACCAA+TGG + chr1_4:19533742-19533761 Msa0154760:intron 25.0%
! TTAGAAGATTACAAATCCAT+TGG - chr1_4:19533761-19533780 None:intergenic 25.0%
! TCTTTAGATAGATATTACCA+TGG - chr1_4:19533988-19534007 None:intergenic 25.0%
!!! AGAAGTATCAAAATTTTAGC+AGG - chr1_4:19534021-19534040 None:intergenic 25.0%
!!! GCTAAAATTTTGATACTTCT+AGG + chr1_4:19534021-19534040 Msa0154760:intron 25.0%
! ATCTAAGCTATTTAGTATAC+TGG + chr1_4:19534316-19534335 Msa0154760:intron 25.0%
! TCTAAGCTATTTAGTATACT+GGG + chr1_4:19534317-19534336 Msa0154760:intron 25.0%
! TACATTTATTTCAACATGAG+TGG - chr1_4:19535042-19535061 None:intergenic 25.0%
!! CTTCTTTCATTTTCTTATCA+AGG + chr1_4:19535185-19535204 Msa0154760:three_prime_UTR 25.0%
! AATCATTCATAGAATTGAAG+TGG - chr1_4:19535259-19535278 None:intergenic 25.0%
! TCAATTCTATGAATGATTAC+GGG + chr1_4:19535261-19535280 Msa0154760:three_prime_UTR 25.0%
CTATTACCTGGTTTATCAAA+TGG + chr1_4:19533456-19533475 Msa0154760:CDS 30.0%
ACATGTTTGGTCATAGTAAT+GGG - chr1_4:19533563-19533582 None:intergenic 30.0%
! GAAATGATTTTGTCCAATTG+TGG - chr1_4:19533586-19533605 None:intergenic 30.0%
AATGATCGAACTGAGATATT+AGG - chr1_4:19533867-19533886 None:intergenic 30.0%
GGCATATAGGATACAATTAT+TGG - chr1_4:19534059-19534078 None:intergenic 30.0%
CATACATATCTACTCTACAT+AGG - chr1_4:19534080-19534099 None:intergenic 30.0%
CTATGTAGAGTAGATATGTA+TGG + chr1_4:19534078-19534097 Msa0154760:intron 30.0%
! CCTTTTAGTACTTTCCAATA+TGG - chr1_4:19534401-19534420 None:intergenic 30.0%
!! CCATATTGGAAAGTACTAAA+AGG + chr1_4:19534398-19534417 Msa0154760:CDS 30.0%
!! ATTGGAAAGTACTAAAAGGA+CGG + chr1_4:19534402-19534421 Msa0154760:CDS 30.0%
AAAGATATGGTGACTTTATC+TGG + chr1_4:19534530-19534549 Msa0154760:CDS 30.0%
!!! GTTTTGGGCACTTATTTTTT+AGG - chr1_4:19534664-19534683 None:intergenic 30.0%
!!! TTTGGTTGTTGTTTGGTTTT+GGG - chr1_4:19534679-19534698 None:intergenic 30.0%
!!! TTTTGGTTGTTGTTTGGTTT+TGG - chr1_4:19534680-19534699 None:intergenic 30.0%
! ACTCTTTGAAAAACAAACTC+TGG - chr1_4:19534850-19534869 None:intergenic 30.0%
GCAAAGACAAAAAACAATCA+CGG - chr1_4:19534977-19534996 None:intergenic 30.0%
TGTATACCTCATATCAAGAA+TGG + chr1_4:19535070-19535089 Msa0154760:three_prime_UTR 30.0%
CATTTACCATTCTTGATATG+AGG - chr1_4:19535079-19535098 None:intergenic 30.0%
CTATTACCTGGTTTATCAAA+TGG + chr1_4:19533456-19533475 Msa0154760:CDS 30.0%
ACATGTTTGGTCATAGTAAT+GGG - chr1_4:19533563-19533582 None:intergenic 30.0%
! GAAATGATTTTGTCCAATTG+TGG - chr1_4:19533586-19533605 None:intergenic 30.0%
AATGATCGAACTGAGATATT+AGG - chr1_4:19533867-19533886 None:intergenic 30.0%
GGCATATAGGATACAATTAT+TGG - chr1_4:19534059-19534078 None:intergenic 30.0%
CATACATATCTACTCTACAT+AGG - chr1_4:19534080-19534099 None:intergenic 30.0%
CTATGTAGAGTAGATATGTA+TGG + chr1_4:19534078-19534097 Msa0154760:intron 30.0%
! CCTTTTAGTACTTTCCAATA+TGG - chr1_4:19534401-19534420 None:intergenic 30.0%
!! CCATATTGGAAAGTACTAAA+AGG + chr1_4:19534398-19534417 Msa0154760:CDS 30.0%
!! ATTGGAAAGTACTAAAAGGA+CGG + chr1_4:19534402-19534421 Msa0154760:CDS 30.0%
AAAGATATGGTGACTTTATC+TGG + chr1_4:19534530-19534549 Msa0154760:CDS 30.0%
!!! GTTTTGGGCACTTATTTTTT+AGG - chr1_4:19534664-19534683 None:intergenic 30.0%
!!! TTTGGTTGTTGTTTGGTTTT+GGG - chr1_4:19534679-19534698 None:intergenic 30.0%
!!! TTTTGGTTGTTGTTTGGTTT+TGG - chr1_4:19534680-19534699 None:intergenic 30.0%
! ACTCTTTGAAAAACAAACTC+TGG - chr1_4:19534850-19534869 None:intergenic 30.0%
GCAAAGACAAAAAACAATCA+CGG - chr1_4:19534977-19534996 None:intergenic 30.0%
TGTATACCTCATATCAAGAA+TGG + chr1_4:19535070-19535089 Msa0154760:three_prime_UTR 30.0%
CATTTACCATTCTTGATATG+AGG - chr1_4:19535079-19535098 None:intergenic 30.0%
GAGAACTGTAAAATGAGGAT+TGG - chr1_4:19533433-19533452 None:intergenic 35.0%
GTAAAGAAGAGGAAAAGGAT+TGG - chr1_4:19533508-19533527 None:intergenic 35.0%
GACATGTTTGGTCATAGTAA+TGG - chr1_4:19533564-19533583 None:intergenic 35.0%
GGACAAAATCATTTCAGAGA+CGG + chr1_4:19533591-19533610 Msa0154760:CDS 35.0%
GAAGAACATCCTCAAAATAC+GGG - chr1_4:19533653-19533672 None:intergenic 35.0%
GGAAGAACATCCTCAAAATA+CGG - chr1_4:19533654-19533673 None:intergenic 35.0%
TCTTCCATGACTGTTTCATA+AGG + chr1_4:19533668-19533687 Msa0154760:CDS 35.0%
CTTCCATGACTGTTTCATAA+GGG + chr1_4:19533669-19533688 Msa0154760:CDS 35.0%
ATACCCTTATGAAACAGTCA+TGG - chr1_4:19533675-19533694 None:intergenic 35.0%
ATCGAACTGAGATATTAGGA+GGG - chr1_4:19533863-19533882 None:intergenic 35.0%
AGCTAAAGCAAAGCTTGAAT+TGG + chr1_4:19533902-19533921 Msa0154760:CDS 35.0%
TCTACTCTACATAGGCATAT+AGG - chr1_4:19534072-19534091 None:intergenic 35.0%
TATTACAAACAACTGCTAGC+TGG + chr1_4:19534746-19534765 Msa0154760:CDS 35.0%
! TTGGTGATTACAGAACTAGA+TGG + chr1_4:19534801-19534820 Msa0154760:CDS 35.0%
TTGAAACTCGGAAATCTAAG+AGG + chr1_4:19534884-19534903 Msa0154760:CDS 35.0%
AAGTCTCACTTCTCCATTAT+CGG - chr1_4:19534912-19534931 None:intergenic 35.0%
AGAAGTGAGACTTAATTGCA+GGG + chr1_4:19534919-19534938 Msa0154760:CDS 35.0%
GAGAACTGTAAAATGAGGAT+TGG - chr1_4:19533433-19533452 None:intergenic 35.0%
GTAAAGAAGAGGAAAAGGAT+TGG - chr1_4:19533508-19533527 None:intergenic 35.0%
GACATGTTTGGTCATAGTAA+TGG - chr1_4:19533564-19533583 None:intergenic 35.0%
GGACAAAATCATTTCAGAGA+CGG + chr1_4:19533591-19533610 Msa0154760:CDS 35.0%
GAAGAACATCCTCAAAATAC+GGG - chr1_4:19533653-19533672 None:intergenic 35.0%
GGAAGAACATCCTCAAAATA+CGG - chr1_4:19533654-19533673 None:intergenic 35.0%
TCTTCCATGACTGTTTCATA+AGG + chr1_4:19533668-19533687 Msa0154760:CDS 35.0%
CTTCCATGACTGTTTCATAA+GGG + chr1_4:19533669-19533688 Msa0154760:CDS 35.0%
ATACCCTTATGAAACAGTCA+TGG - chr1_4:19533675-19533694 None:intergenic 35.0%
ATCGAACTGAGATATTAGGA+GGG - chr1_4:19533863-19533882 None:intergenic 35.0%
AGCTAAAGCAAAGCTTGAAT+TGG + chr1_4:19533902-19533921 Msa0154760:CDS 35.0%
TCTACTCTACATAGGCATAT+AGG - chr1_4:19534072-19534091 None:intergenic 35.0%
TATTACAAACAACTGCTAGC+TGG + chr1_4:19534746-19534765 Msa0154760:CDS 35.0%
! TTGGTGATTACAGAACTAGA+TGG + chr1_4:19534801-19534820 Msa0154760:CDS 35.0%
TTGAAACTCGGAAATCTAAG+AGG + chr1_4:19534884-19534903 Msa0154760:CDS 35.0%
AAGTCTCACTTCTCCATTAT+CGG - chr1_4:19534912-19534931 None:intergenic 35.0%
AGAAGTGAGACTTAATTGCA+GGG + chr1_4:19534919-19534938 Msa0154760:CDS 35.0%
AGCTCGAGAACTGTAAAATG+AGG - chr1_4:19533438-19533457 None:intergenic 40.0%
GAAGAGGAAAAGGATTGGAA+AGG - chr1_4:19533503-19533522 None:intergenic 40.0%
TGACCAAACATGTCCACAAT+TGG + chr1_4:19533570-19533589 Msa0154760:CDS 40.0%
TGTCCAATTGTGGACATGTT+TGG - chr1_4:19533576-19533595 None:intergenic 40.0%
!! TTTTGGGTCATGGATAGAAG+CGG - chr1_4:19533623-19533642 None:intergenic 40.0%
ACTAACCAAGCAGAGAAAGA+CGG + chr1_4:19533837-19533856 Msa0154760:CDS 40.0%
GATCGAACTGAGATATTAGG+AGG - chr1_4:19533864-19533883 None:intergenic 40.0%
! TGCTCTTTTAGCAAGAGATG+TGG + chr1_4:19533959-19533978 Msa0154760:CDS 40.0%
GTACTAAAAGGACGGAAAGA+TGG + chr1_4:19534410-19534429 Msa0154760:CDS 40.0%
TAAAAGGACGGAAAGATGGA+AGG + chr1_4:19534414-19534433 Msa0154760:CDS 40.0%
AAAAGGACGGAAAGATGGAA+GGG + chr1_4:19534415-19534434 Msa0154760:CDS 40.0%
!! GAAAGATGGAAGGGTATCAA+AGG + chr1_4:19534424-19534443 Msa0154760:CDS 40.0%
! AATGAGTTGGCCTACATTCA+AGG - chr1_4:19534480-19534499 None:intergenic 40.0%
!! TAGCAAAGCTCTGAATGAGT+TGG - chr1_4:19534493-19534512 None:intergenic 40.0%
ATTCAGAGCTTTGCTAAGAG+AGG + chr1_4:19534497-19534516 Msa0154760:CDS 40.0%
TTCAGAGCTTTGCTAAGAGA+GGG + chr1_4:19534498-19534517 Msa0154760:CDS 40.0%
AGGGTTGGGAGTTAAAGATA+TGG + chr1_4:19534517-19534536 Msa0154760:CDS 40.0%
GATATGGTGACTTTATCTGG+AGG + chr1_4:19534533-19534552 Msa0154760:CDS 40.0%
CTCACATTGTTCTTCCTTTG+AGG + chr1_4:19534571-19534590 Msa0154760:CDS 40.0%
ATTATGTAGACGAGCCTCAA+AGG - chr1_4:19534588-19534607 None:intergenic 40.0%
CAAATTCAGTGTTCAACCGT+GGG - chr1_4:19534634-19534653 None:intergenic 40.0%
AAACAACTGCTAGCTGGAAA+AGG + chr1_4:19534752-19534771 Msa0154760:CDS 40.0%
ATCACCAACAAGTGACTGAT+CGG - chr1_4:19534789-19534808 None:intergenic 40.0%
GCAGCTTCAATGTTGAAACT+CGG + chr1_4:19534872-19534891 Msa0154760:CDS 40.0%
AATCTAAGAGGCTCCGATAA+TGG + chr1_4:19534896-19534915 Msa0154760:CDS 40.0%
GAGAAGTGAGACTTAATTGC+AGG + chr1_4:19534918-19534937 Msa0154760:CDS 40.0%
CATTTGTGCACAATAGCATG+AGG + chr1_4:19535108-19535127 Msa0154760:three_prime_UTR 40.0%
AGCCTTCTATTCCATGTTGA+CGG + chr1_4:19535225-19535244 Msa0154760:three_prime_UTR 40.0%
AGCTCGAGAACTGTAAAATG+AGG - chr1_4:19533438-19533457 None:intergenic 40.0%
GAAGAGGAAAAGGATTGGAA+AGG - chr1_4:19533503-19533522 None:intergenic 40.0%
TGACCAAACATGTCCACAAT+TGG + chr1_4:19533570-19533589 Msa0154760:CDS 40.0%
TGTCCAATTGTGGACATGTT+TGG - chr1_4:19533576-19533595 None:intergenic 40.0%
!! TTTTGGGTCATGGATAGAAG+CGG - chr1_4:19533623-19533642 None:intergenic 40.0%
ACTAACCAAGCAGAGAAAGA+CGG + chr1_4:19533837-19533856 Msa0154760:CDS 40.0%
GATCGAACTGAGATATTAGG+AGG - chr1_4:19533864-19533883 None:intergenic 40.0%
! TGCTCTTTTAGCAAGAGATG+TGG + chr1_4:19533959-19533978 Msa0154760:CDS 40.0%
GTACTAAAAGGACGGAAAGA+TGG + chr1_4:19534410-19534429 Msa0154760:CDS 40.0%
TAAAAGGACGGAAAGATGGA+AGG + chr1_4:19534414-19534433 Msa0154760:CDS 40.0%
AAAAGGACGGAAAGATGGAA+GGG + chr1_4:19534415-19534434 Msa0154760:CDS 40.0%
!! GAAAGATGGAAGGGTATCAA+AGG + chr1_4:19534424-19534443 Msa0154760:CDS 40.0%
! AATGAGTTGGCCTACATTCA+AGG - chr1_4:19534480-19534499 None:intergenic 40.0%
!! TAGCAAAGCTCTGAATGAGT+TGG - chr1_4:19534493-19534512 None:intergenic 40.0%
ATTCAGAGCTTTGCTAAGAG+AGG + chr1_4:19534497-19534516 Msa0154760:CDS 40.0%
TTCAGAGCTTTGCTAAGAGA+GGG + chr1_4:19534498-19534517 Msa0154760:CDS 40.0%
AGGGTTGGGAGTTAAAGATA+TGG + chr1_4:19534517-19534536 Msa0154760:CDS 40.0%
GATATGGTGACTTTATCTGG+AGG + chr1_4:19534533-19534552 Msa0154760:CDS 40.0%
CTCACATTGTTCTTCCTTTG+AGG + chr1_4:19534571-19534590 Msa0154760:CDS 40.0%
ATTATGTAGACGAGCCTCAA+AGG - chr1_4:19534588-19534607 None:intergenic 40.0%
CAAATTCAGTGTTCAACCGT+GGG - chr1_4:19534634-19534653 None:intergenic 40.0%
AAACAACTGCTAGCTGGAAA+AGG + chr1_4:19534752-19534771 Msa0154760:CDS 40.0%
ATCACCAACAAGTGACTGAT+CGG - chr1_4:19534789-19534808 None:intergenic 40.0%
GCAGCTTCAATGTTGAAACT+CGG + chr1_4:19534872-19534891 Msa0154760:CDS 40.0%
AATCTAAGAGGCTCCGATAA+TGG + chr1_4:19534896-19534915 Msa0154760:CDS 40.0%
GAGAAGTGAGACTTAATTGC+AGG + chr1_4:19534918-19534937 Msa0154760:CDS 40.0%
CATTTGTGCACAATAGCATG+AGG + chr1_4:19535108-19535127 Msa0154760:three_prime_UTR 40.0%
AGCCTTCTATTCCATGTTGA+CGG + chr1_4:19535225-19535244 Msa0154760:three_prime_UTR 40.0%
ACAGTTCTCGAGCTATTACC+TGG + chr1_4:19533444-19533463 Msa0154760:CDS 45.0%
GAGGAGCCATTTGATAAACC+AGG - chr1_4:19533465-19533484 None:intergenic 45.0%
!! AAGGTGTTTTGTGCTAGCAG+AGG - chr1_4:19533484-19533503 None:intergenic 45.0%
ATGGGCATGAAGTTCAGCTT+TGG - chr1_4:19533545-19533564 None:intergenic 45.0%
!!! AAATACGGGCTGGGACTTTT+GGG - chr1_4:19533639-19533658 None:intergenic 45.0%
!!! AAAATACGGGCTGGGACTTT+TGG - chr1_4:19533640-19533659 None:intergenic 45.0%
ACATCCTCAAAATACGGGCT+GGG - chr1_4:19533648-19533667 None:intergenic 45.0%
AACATCCTCAAAATACGGGC+TGG - chr1_4:19533649-19533668 None:intergenic 45.0%
ATGTGATGCATCAGTGTTGC+TGG + chr1_4:19533803-19533822 Msa0154760:CDS 45.0%
GTCTTTCTCTGCTTGGTTAG+TGG - chr1_4:19533838-19533857 None:intergenic 45.0%
CAGCACAAGAAACAATGCCT+GGG - chr1_4:19533932-19533951 None:intergenic 45.0%
TCAGCACAAGAAACAATGCC+TGG - chr1_4:19533933-19533952 None:intergenic 45.0%
CCAGACTGTCAGAGCAAATA+GGG - chr1_4:19534374-19534393 None:intergenic 45.0%
TCCAGACTGTCAGAGCAAAT+AGG - chr1_4:19534375-19534394 None:intergenic 45.0%
TATTTGCTCTGACAGTCTGG+AGG + chr1_4:19534374-19534393 Msa0154760:intron 45.0%
TTGGCCTACATTCAAGGTTG+GGG - chr1_4:19534474-19534493 None:intergenic 45.0%
! GTTGGCCTACATTCAAGGTT+GGG - chr1_4:19534475-19534494 None:intergenic 45.0%
! AGTTGGCCTACATTCAAGGT+TGG - chr1_4:19534476-19534495 None:intergenic 45.0%
AGCTTTGCTAAGAGAGGGTT+GGG + chr1_4:19534503-19534522 Msa0154760:CDS 45.0%
TTTATCTGGAGGACACACTC+TGG + chr1_4:19534544-19534563 Msa0154760:CDS 45.0%
TTATCTGGAGGACACACTCT+GGG + chr1_4:19534545-19534564 Msa0154760:CDS 45.0%
GCAAATTCAGTGTTCAACCG+TGG - chr1_4:19534635-19534654 None:intergenic 45.0%
!!! CCTGCGTTTTGGTTGTTGTT+TGG - chr1_4:19534686-19534705 None:intergenic 45.0%
CCAAACAACAACCAAAACGC+AGG + chr1_4:19534683-19534702 Msa0154760:CDS 45.0%
TCTTCCGATCAGTCACTTGT+TGG + chr1_4:19534782-19534801 Msa0154760:CDS 45.0%
TATTCCATGTTGACGGCCTT+CGG + chr1_4:19535232-19535251 Msa0154760:three_prime_UTR 45.0%
ATAGAATTGAAGTGGCCCGA+AGG - chr1_4:19535251-19535270 None:intergenic 45.0%
ACAGTTCTCGAGCTATTACC+TGG + chr1_4:19533444-19533463 Msa0154760:CDS 45.0%
GAGGAGCCATTTGATAAACC+AGG - chr1_4:19533465-19533484 None:intergenic 45.0%
!! AAGGTGTTTTGTGCTAGCAG+AGG - chr1_4:19533484-19533503 None:intergenic 45.0%
ATGGGCATGAAGTTCAGCTT+TGG - chr1_4:19533545-19533564 None:intergenic 45.0%
!!! AAATACGGGCTGGGACTTTT+GGG - chr1_4:19533639-19533658 None:intergenic 45.0%
!!! AAAATACGGGCTGGGACTTT+TGG - chr1_4:19533640-19533659 None:intergenic 45.0%
ACATCCTCAAAATACGGGCT+GGG - chr1_4:19533648-19533667 None:intergenic 45.0%
AACATCCTCAAAATACGGGC+TGG - chr1_4:19533649-19533668 None:intergenic 45.0%
ATGTGATGCATCAGTGTTGC+TGG + chr1_4:19533803-19533822 Msa0154760:CDS 45.0%
GTCTTTCTCTGCTTGGTTAG+TGG - chr1_4:19533838-19533857 None:intergenic 45.0%
CAGCACAAGAAACAATGCCT+GGG - chr1_4:19533932-19533951 None:intergenic 45.0%
TCAGCACAAGAAACAATGCC+TGG - chr1_4:19533933-19533952 None:intergenic 45.0%
CCAGACTGTCAGAGCAAATA+GGG - chr1_4:19534374-19534393 None:intergenic 45.0%
TCCAGACTGTCAGAGCAAAT+AGG - chr1_4:19534375-19534394 None:intergenic 45.0%
TATTTGCTCTGACAGTCTGG+AGG + chr1_4:19534374-19534393 Msa0154760:intron 45.0%
TTGGCCTACATTCAAGGTTG+GGG - chr1_4:19534474-19534493 None:intergenic 45.0%
! GTTGGCCTACATTCAAGGTT+GGG - chr1_4:19534475-19534494 None:intergenic 45.0%
! AGTTGGCCTACATTCAAGGT+TGG - chr1_4:19534476-19534495 None:intergenic 45.0%
AGCTTTGCTAAGAGAGGGTT+GGG + chr1_4:19534503-19534522 Msa0154760:CDS 45.0%
TTTATCTGGAGGACACACTC+TGG + chr1_4:19534544-19534563 Msa0154760:CDS 45.0%
TTATCTGGAGGACACACTCT+GGG + chr1_4:19534545-19534564 Msa0154760:CDS 45.0%
GCAAATTCAGTGTTCAACCG+TGG - chr1_4:19534635-19534654 None:intergenic 45.0%
!!! CCTGCGTTTTGGTTGTTGTT+TGG - chr1_4:19534686-19534705 None:intergenic 45.0%
CCAAACAACAACCAAAACGC+AGG + chr1_4:19534683-19534702 Msa0154760:CDS 45.0%
TCTTCCGATCAGTCACTTGT+TGG + chr1_4:19534782-19534801 Msa0154760:CDS 45.0%
TATTCCATGTTGACGGCCTT+CGG + chr1_4:19535232-19535251 Msa0154760:three_prime_UTR 45.0%
ATAGAATTGAAGTGGCCCGA+AGG - chr1_4:19535251-19535270 None:intergenic 45.0%
! AAGTCCCAGCCCGTATTTTG+AGG + chr1_4:19533641-19533660 Msa0154760:CDS 50.0%
!! AAGCTTGAATTGGCTTGCCC+AGG + chr1_4:19533912-19533931 Msa0154760:CDS 50.0%
AGCAAGAGATGTGGTTGCCA+TGG + chr1_4:19533968-19533987 Msa0154760:CDS 50.0%
CCCTATTTGCTCTGACAGTC+TGG + chr1_4:19534371-19534390 Msa0154760:intron 50.0%
GACAGTCTGGAGGTCCATAT+TGG + chr1_4:19534384-19534403 Msa0154760:intron 50.0%
GAGCTTTGCTAAGAGAGGGT+TGG + chr1_4:19534502-19534521 Msa0154760:CDS 50.0%
CTGTTCATGACACTGACCCA+CGG + chr1_4:19534615-19534634 Msa0154760:CDS 50.0%
ACACTGATGCTGTTGAGTCC+AGG - chr1_4:19534715-19534734 None:intergenic 50.0%
GGCCGTCAACATGGAATAGA+AGG - chr1_4:19535230-19535249 None:intergenic 50.0%
ATTCCATGTTGACGGCCTTC+GGG + chr1_4:19535233-19535252 Msa0154760:three_prime_UTR 50.0%
! AAGTCCCAGCCCGTATTTTG+AGG + chr1_4:19533641-19533660 Msa0154760:CDS 50.0%
!! AAGCTTGAATTGGCTTGCCC+AGG + chr1_4:19533912-19533931 Msa0154760:CDS 50.0%
AGCAAGAGATGTGGTTGCCA+TGG + chr1_4:19533968-19533987 Msa0154760:CDS 50.0%
CCCTATTTGCTCTGACAGTC+TGG + chr1_4:19534371-19534390 Msa0154760:intron 50.0%
GACAGTCTGGAGGTCCATAT+TGG + chr1_4:19534384-19534403 Msa0154760:intron 50.0%
GAGCTTTGCTAAGAGAGGGT+TGG + chr1_4:19534502-19534521 Msa0154760:CDS 50.0%
CTGTTCATGACACTGACCCA+CGG + chr1_4:19534615-19534634 Msa0154760:CDS 50.0%
ACACTGATGCTGTTGAGTCC+AGG - chr1_4:19534715-19534734 None:intergenic 50.0%
GGCCGTCAACATGGAATAGA+AGG - chr1_4:19535230-19535249 None:intergenic 50.0%
ATTCCATGTTGACGGCCTTC+GGG + chr1_4:19535233-19535252 Msa0154760:three_prime_UTR 50.0%
! CAAGGTTGGGGCTGGTAAGT+TGG - chr1_4:19534462-19534481 None:intergenic 55.0%
CCTACATTCAAGGTTGGGGC+TGG - chr1_4:19534470-19534489 None:intergenic 55.0%
CCAGCCCCAACCTTGAATGT+AGG + chr1_4:19534467-19534486 Msa0154760:CDS 55.0%
! CCAGGAACTGTCCTGCGTTT+TGG - chr1_4:19534697-19534716 None:intergenic 55.0%
CCAAAACGCAGGACAGTTCC+TGG + chr1_4:19534694-19534713 Msa0154760:CDS 55.0%
! CAAGGTTGGGGCTGGTAAGT+TGG - chr1_4:19534462-19534481 None:intergenic 55.0%
CCTACATTCAAGGTTGGGGC+TGG - chr1_4:19534470-19534489 None:intergenic 55.0%
CCAGCCCCAACCTTGAATGT+AGG + chr1_4:19534467-19534486 Msa0154760:CDS 55.0%
! CCAGGAACTGTCCTGCGTTT+TGG - chr1_4:19534697-19534716 None:intergenic 55.0%
CCAAAACGCAGGACAGTTCC+TGG + chr1_4:19534694-19534713 Msa0154760:CDS 55.0%
!! GGGCTGGGACTTTTGGGTCA+TGG - chr1_4:19533633-19533652 None:intergenic 60.0%
GAGGGCCGTCTTTCTCTGCT+TGG - chr1_4:19533845-19533864 None:intergenic 60.0%
! GGTTGGGGCTGGTAAGTTGG+CGG - chr1_4:19534459-19534478 None:intergenic 60.0%
!! GGGCTGGGACTTTTGGGTCA+TGG - chr1_4:19533633-19533652 None:intergenic 60.0%
GAGGGCCGTCTTTCTCTGCT+TGG - chr1_4:19533845-19533864 None:intergenic 60.0%
! GGTTGGGGCTGGTAAGTTGG+CGG - chr1_4:19534459-19534478 None:intergenic 60.0%
TGGCCCGAAGGCCGTCAACA+TGG - chr1_4:19535239-19535258 None:intergenic 65.0%
TGGCCCGAAGGCCGTCAACA+TGG - chr1_4:19535239-19535258 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 19533427 19535314 19533427 ID=Msa0154760;Name=Msa0154760
chr1_4 mRNA 19533427 19535314 19533427 ID=Msa0154760-mRNA-1;Parent=Msa0154760;Name=Msa0154760-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|1|1|1|1|3|362|338
chr1_4 exon 19533427 19533690 19533427 ID=Msa0154760-mRNA-1:exon:7169;Parent=Msa0154760-mRNA-1
chr1_4 exon 19533801 19533989 19533801 ID=Msa0154760-mRNA-1:exon:7170;Parent=Msa0154760-mRNA-1
chr1_4 exon 19534389 19535314 19534389 ID=Msa0154760-mRNA-1:exon:7171;Parent=Msa0154760-mRNA-1
chr1_4 CDS 19533427 19533690 19533427 ID=Msa0154760-mRNA-1:cds;Parent=Msa0154760-mRNA-1
chr1_4 CDS 19533801 19533989 19533801 ID=Msa0154760-mRNA-1:cds;Parent=Msa0154760-mRNA-1
chr1_4 CDS 19534389 19534952 19534389 ID=Msa0154760-mRNA-1:cds;Parent=Msa0154760-mRNA-1
chr1_4 three_prime_UTR 19534953 19535314 19534953 ID=Msa0154760-mRNA-1:three_prime_utr;Parent=Msa0154760-mRNA-1
Gene Sequence

>Msa0154760

CATCCAATCCTCATTTTACAGTTCTCGAGCTATTACCTGGTTTATCAAATGGCTCCTCTGCTAGCACAAAACACCTTTCCAATCCTTTTCCTCTTCTTTACAATATTTACATTATCCAAAGCTGAACTTCATGCCCATTACTATGACCAAACATGTCCACAATTGGACAAAATCATTTCAGAGACGGTTCTAACCGCTTCTATCCATGACCCAAAAGTCCCAGCCCGTATTTTGAGGATGTTCTTCCATGACTGTTTCATAAGGGGATGTGATGCATCAGTGTTGCTGGATTCAACTGCCACTAACCAAGCAGAGAAAGACGGCCCTCCTAATATCTCAGTTCGATCATTCTATGTGATTGATGAAGCTAAAGCAAAGCTTGAATTGGCTTGCCCAGGCATTGTTTCTTGTGCTGATATACTTGCTCTTTTAGCAAGAGATGTGGTTGCCATGTCTGGAGGTCCATATTGGAAAGTACTAAAAGGACGGAAAGATGGAAGGGTATCAAAGGCATCTGATACCGCCAACTTACCAGCCCCAACCTTGAATGTAGGCCAACTCATTCAGAGCTTTGCTAAGAGAGGGTTGGGAGTTAAAGATATGGTGACTTTATCTGGAGGACACACTCTGGGTTTCTCACATTGTTCTTCCTTTGAGGCTCGTCTACATAATTTCAGTTCTGTTCATGACACTGACCCACGGTTGAACACTGAATTTGCACTAGACCTAAAAAATAAGTGCCCAAAACCAAACAACAACCAAAACGCAGGACAGTTCCTGGACTCAACAGCATCAGTGTTTGATAATGACTATTACAAACAACTGCTAGCTGGAAAAGGTGTGTTTTCTTCCGATCAGTCACTTGTTGGTGATTACAGAACTAGATGGATTGTTGAAGCATTTGCAAGAGACCAGAGTTTGTTTTTCAAAGAGTTTGCAGCTTCAATGTTGAAACTCGGAAATCTAAGAGGCTCCGATAATGGAGAAGTGAGACTTAATTGCAGGGTTGTGAATTGA
Protein sequence

>Msa0154760

HPILILQFSSYYLVYQMAPLLAQNTFPILFLFFTIFTLSKAELHAHYYDQTCPQLDKIISETVLTASIHDPKVPARILRMFFHDCFIRGCDASVLLDSTATNQAEKDGPPNISVRSFYVIDEAKAKLELACPGIVSCADILALLARDVVAMSGGPYWKVLKGRKDGRVSKASDTANLPAPTLNVGQLIQSFAKRGLGVKDMVTLSGGHTLGFSHCSSFEARLHNFSSVHDTDPRLNTEFALDLKNKCPKPNNNQNAGQFLDSTASVFDNDYYKQLLAGKGVFSSDQSLVGDYRTRWIVEAFARDQSLFFKEFAASMLKLGNLRGSDNGEVRLNCRVVN*