Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361850 | XP_013470130.1 | 94.091 | 220 | 9 | 1 | 1 | 220 | 1 | 216 | 6.34e-138 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361850 | G8A288 | 94.091 | 220 | 9 | 1 | 1 | 220 | 1 | 216 | 3.03e-138 | 395 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1361850 | Msa1439960 | 0.801503 | 8.730375e-49 | -8.615850e-47 |
| Msa0137040 | Msa1361850 | 0.859338 | 4.431945e-63 | -8.615850e-47 |
| Msa0404030 | Msa1361850 | 0.814021 | 1.904322e-51 | -8.615850e-47 |
| Msa0999960 | Msa1361850 | -0.820073 | 8.316540e-53 | -8.615850e-47 |
| Msa1010800 | Msa1361850 | 0.805205 | 1.493541e-49 | -8.615850e-47 |
| Msa1039880 | Msa1361850 | 0.803399 | 3.551442e-49 | -8.615850e-47 |
| Msa0347360 | Msa1361850 | 0.806574 | 7.698203e-50 | -8.615850e-47 |
| Msa0547760 | Msa1361850 | 0.800477 | 1.415168e-48 | -8.615850e-47 |
| Msa0930460 | Msa1361850 | -0.806679 | 7.317325e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361850 | MtrunA17_Chr1g0209081 | 94.091 | 220 | 9 | 1 | 1 | 220 | 1 | 216 | 5.83e-142 | 395 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361850 | AT1G68185.1 | 47.085 | 223 | 107 | 6 | 1 | 220 | 1 | 215 | 3.82e-49 | 160 |
| Msa1361850 | AT1G68185.3 | 47.085 | 223 | 107 | 6 | 1 | 220 | 1 | 215 | 3.82e-49 | 160 |
| Msa1361850 | AT1G68185.2 | 47.085 | 223 | 107 | 6 | 1 | 220 | 47 | 261 | 2.89e-48 | 159 |
Find 69 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGAGCTGAGATTGACATTT+TGG | 0.125187 | tig0017635:-58134 | Msa1361850:three_prime_UTR |
| ACCCTCATGTTATACAAATT+TGG | 0.152649 | tig0017635:+57747 | None:intergenic |
| AATAATTAATGATTATATTT+TGG | 0.153894 | tig0017635:+57844 | None:intergenic |
| GTATAACATGAGGGTTATTT+AGG | 0.223417 | tig0017635:-57739 | Msa1361850:three_prime_UTR |
| CCTCCTCATCAGTCTTCTTA+TGG | 0.228908 | tig0017635:+60060 | None:intergenic |
| GAATTCTTCTTTCTCTTCTT+AGG | 0.234591 | tig0017635:+60292 | None:intergenic |
| ACCATCGAGGCACACGATAT+TGG | 0.263756 | tig0017635:+60456 | None:intergenic |
| AAAGCAGATTCGGATGTTTA+TGG | 0.264643 | tig0017635:-59374 | Msa1361850:intron |
| ATGTGAAGTCAAGTTGATTT+AGG | 0.273644 | tig0017635:-58956 | Msa1361850:intron |
| GCAGCTGTTGGCCCTCTCTA+AGG | 0.327070 | tig0017635:-57808 | Msa1361850:three_prime_UTR |
| TATCATTATCTTCCATTTCA+AGG | 0.332434 | tig0017635:+58991 | None:intergenic |
| ATGATGTTGTGCATTATGTT+TGG | 0.333046 | tig0017635:-57918 | Msa1361850:three_prime_UTR |
| CAAAATCCAGACAGCGATAA+TGG | 0.337536 | tig0017635:-60617 | Msa1361850:exon |
| AAAATATGTACTGTACAATT+AGG | 0.339197 | tig0017635:+58026 | None:intergenic |
| TGCACAACATCATCAATAGA+AGG | 0.365604 | tig0017635:+57928 | None:intergenic |
| CCATCGAGGCACACGATATT+GGG | 0.373094 | tig0017635:+60457 | None:intergenic |
| AGTCTTCTTATGGGCCTTAC+CGG | 0.377421 | tig0017635:+60070 | None:intergenic |
| GTAGAAGTTCTTTCGGTGTA+TGG | 0.379855 | tig0017635:-57976 | Msa1361850:three_prime_UTR |
| CTCCTCATCAGTCTTCTTAT+GGG | 0.387413 | tig0017635:+60061 | None:intergenic |
| AAACAAGGGTTCAAGTTCTT+CGG | 0.392297 | tig0017635:+60498 | None:intergenic |
| AACCCCTGCCAGCCTTGAAA+TGG | 0.394451 | tig0017635:-59003 | Msa1361850:CDS |
| TGATGTTGTGCATTATGTTT+GGG | 0.409527 | tig0017635:-57917 | Msa1361850:three_prime_UTR |
| CAAATTGTGTTGTCATTTGA+CGG | 0.420581 | tig0017635:-59047 | Msa1361850:CDS |
| CCCAATATCGTGTGCCTCGA+TGG | 0.441844 | tig0017635:-60457 | Msa1361850:intron |
| ATTCAACTTTGAAGAATTTG+AGG | 0.442827 | tig0017635:-60037 | Msa1361850:intron |
| AGGGTTATTTAGGATACAAA+TGG | 0.446647 | tig0017635:-57729 | Msa1361850:three_prime_UTR |
| TTTGGGGTTTAGGTTGAGAA+TGG | 0.451301 | tig0017635:-60170 | Msa1361850:intron |
| CTGATGCAGATCTTCGATCA+TGG | 0.453261 | tig0017635:-58154 | Msa1361850:intron |
| TCTTCCATTTCAAGGCTGGC+AGG | 0.456162 | tig0017635:+58999 | None:intergenic |
| AGGATGAAACAAAGCAGATT+CGG | 0.459454 | tig0017635:-59384 | Msa1361850:CDS |
| TTCCATTTCAAGGCTGGCAG+GGG | 0.465493 | tig0017635:+59001 | None:intergenic |
| CCACAACAACTGCCGTGAAA+AGG | 0.475289 | tig0017635:+57779 | None:intergenic |
| TGGGCCTTACCGGTGACCCT+TGG | 0.476360 | tig0017635:+60080 | None:intergenic |
| ATTATCTTCCATTTCAAGGC+TGG | 0.485099 | tig0017635:+58995 | None:intergenic |
| CTTCCATTTCAAGGCTGGCA+GGG | 0.494291 | tig0017635:+59000 | None:intergenic |
| CAATTCATTGCAACCTTCCG+TGG | 0.499026 | tig0017635:-59473 | Msa1361850:CDS |
| TTATTTATGCTAGCAGCTGT+TGG | 0.504433 | tig0017635:-57820 | Msa1361850:three_prime_UTR |
| TTGGGGTTTAGGTTGAGAAT+GGG | 0.505216 | tig0017635:-60169 | Msa1361850:intron |
| GTTCTTTCGGTGTATGGCAT+AGG | 0.505606 | tig0017635:-57970 | Msa1361850:three_prime_UTR |
| ACCACCAAGGGTCACCGGTA+AGG | 0.513160 | tig0017635:-60084 | Msa1361850:CDS |
| AGAATCTTTGCTCGTTCAGA+AGG | 0.520871 | tig0017635:+59424 | None:intergenic |
| TCACCGCCATTATCGCTGTC+TGG | 0.521152 | tig0017635:+60611 | None:intergenic |
| GCCTTACCGGTGACCCTTGG+TGG | 0.522657 | tig0017635:+60083 | None:intergenic |
| TTTGTATAGATTGAAGAAGC+AGG | 0.529052 | tig0017635:-59569 | Msa1361850:intron |
| TCACTTACGTCGTCCACGGA+AGG | 0.541348 | tig0017635:+59460 | None:intergenic |
| AACCAAATTTGTATAACATG+AGG | 0.548156 | tig0017635:-57749 | Msa1361850:three_prime_UTR |
| CCGGTGACCCTTGGTGGTGA+AGG | 0.548861 | tig0017635:+60089 | None:intergenic |
| TGTAGGATGACCAGTTTGAA+AGG | 0.550107 | tig0017635:-59112 | Msa1361850:intron |
| ACCAAATTTGTATAACATGA+GGG | 0.557726 | tig0017635:-57748 | Msa1361850:three_prime_UTR |
| CCTTCACCACCAAGGGTCAC+CGG | 0.569098 | tig0017635:-60089 | Msa1361850:CDS |
| TGAGAATGGGAAGAATACTA+AGG | 0.569816 | tig0017635:-60156 | Msa1361850:CDS |
| TTGGTTACCTTCACCACCAA+GGG | 0.580140 | tig0017635:-60096 | Msa1361850:CDS |
| GCACAACATCATCAATAGAA+GGG | 0.585781 | tig0017635:+57929 | None:intergenic |
| AACGCGACTGTAATCAAACA+AGG | 0.602179 | tig0017635:+60483 | None:intergenic |
| AAAAGGTTACAGCCTTAGAG+AGG | 0.611672 | tig0017635:+57796 | None:intergenic |
| GAATGGGAAGAATACTAAGG+TGG | 0.613980 | tig0017635:-60153 | Msa1361850:CDS |
| TGGACCTCGAGGATGATGAT+TGG | 0.623297 | tig0017635:-60115 | Msa1361850:CDS |
| TCTCATCTCTGTTCAAGACA+AGG | 0.626807 | tig0017635:-59404 | Msa1361850:CDS |
| CCATAAGAAGACTGATGAGG+AGG | 0.627181 | tig0017635:-60060 | Msa1361850:CDS |
| ATTGGTTACCTTCACCACCA+AGG | 0.651945 | tig0017635:-60097 | Msa1361850:CDS |
| AAAGGTTACAGCCTTAGAGA+GGG | 0.685304 | tig0017635:+57797 | None:intergenic |
| TAAGGTGGAAACAGTGAATG+TGG | 0.687527 | tig0017635:-60138 | Msa1361850:CDS |
| GGCCCATAAGAAGACTGATG+AGG | 0.692280 | tig0017635:-60063 | Msa1361850:CDS |
| AGTGAATGTGGTGGACCTCG+AGG | 0.707436 | tig0017635:-60126 | Msa1361850:CDS |
| GGTGGAAACAGTGAATGTGG+TGG | 0.711849 | tig0017635:-60135 | Msa1361850:CDS |
| AATCCAGACAGCGATAATGG+CGG | 0.717060 | tig0017635:-60614 | Msa1361850:intron |
| TTAAGGAGTGCTAACCATCG+AGG | 0.734889 | tig0017635:+60443 | None:intergenic |
| ACGCGACTGTAATCAAACAA+GGG | 0.742183 | tig0017635:+60484 | None:intergenic |
| GTAACCAATCATCATCCTCG+AGG | 0.759157 | tig0017635:+60111 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATTTCAATTTGAATAAT+CGG | + | tig0017635:58039-58058 | None:intergenic | 10.0% |
| !! | AAACAAAAAATTAAACATTT+GGG | + | tig0017635:58066-58085 | None:intergenic | 10.0% |
| !! | AAAACAAAAAATTAAACATT+TGG | + | tig0017635:58067-58086 | None:intergenic | 10.0% |
| !!! | GCTTTTTTTTTTTTTTTTGA+AGG | + | tig0017635:57760-57779 | None:intergenic | 15.0% |
| !! | TACTCAATTTCAAATAATTA+GGG | - | tig0017635:57871-57890 | Msa1361850:three_prime_UTR | 15.0% |
| !! | AACAAAAAATTAAACATTTG+GGG | + | tig0017635:58065-58084 | None:intergenic | 15.0% |
| !!! | TGTAAATTTTGATAATGTTT+TGG | - | tig0017635:58263-58282 | Msa1361850:intron | 15.0% |
| !!! | GTAAATTTTGATAATGTTTT+GGG | - | tig0017635:58264-58283 | Msa1361850:intron | 15.0% |
| !!! | TAAATTTTGATAATGTTTTG+GGG | - | tig0017635:58265-58284 | Msa1361850:intron | 15.0% |
| !! | CTGATAAAGAAAATAAAAAA+AGG | + | tig0017635:59236-59255 | None:intergenic | 15.0% |
| !!! | ATTTTAAAGTAAGAAAACTA+AGG | - | tig0017635:59687-59706 | Msa1361850:intron | 15.0% |
| !! | AAATTGAAAATATTATCTTC+TGG | + | tig0017635:59767-59786 | None:intergenic | 15.0% |
| !!! | ATTTTCAATTTTTTCAACAA+TGG | - | tig0017635:59776-59795 | Msa1361850:intron | 15.0% |
| !! | GTACTCAATTTCAAATAATT+AGG | - | tig0017635:57870-57889 | Msa1361850:three_prime_UTR | 20.0% |
| !! | ACAAAAAATTAAACATTTGG+GGG | + | tig0017635:58064-58083 | None:intergenic | 20.0% |
| !! | CAAAACAAAAAACACAAATT+TGG | + | tig0017635:58216-58235 | None:intergenic | 20.0% |
| !! | AATGGCAAAAAACAAAAATT+TGG | + | tig0017635:58477-58496 | None:intergenic | 20.0% |
| !! | TTAAAATAACATGCTCATAA+AGG | - | tig0017635:58657-58676 | Msa1361850:intron | 20.0% |
| !! | TAAAATAACATGCTCATAAA+GGG | - | tig0017635:58658-58677 | Msa1361850:intron | 20.0% |
| !!! | TTGTATAAAAAAAGTGTGTT+GGG | - | tig0017635:58706-58725 | Msa1361850:intron | 20.0% |
| !! | ATGAGTAGAATAACTTATAT+TGG | + | tig0017635:58791-58810 | None:intergenic | 20.0% |
| !! | TAAAGAAAATAAAAAAAGGC+AGG | + | tig0017635:59232-59251 | None:intergenic | 20.0% |
| !!! | ATTTTGTTTATAATAGTGAC+CGG | + | tig0017635:59933-59952 | None:intergenic | 20.0% |
| !!! | GCTTTTTTATCAATTTTTAC+TGG | - | tig0017635:60368-60387 | Msa1361850:intron | 20.0% |
| !! | AAAATATGTACTGTACAATT+AGG | + | tig0017635:60428-60447 | None:intergenic | 20.0% |
| !! | AATTTTACAGCATAGAAAAG+AGG | - | tig0017635:57712-57731 | Msa1361850:three_prime_UTR | 25.0% |
| !! | TGAAGATTTGAAATTGAAAG+AGG | + | tig0017635:57899-57918 | None:intergenic | 25.0% |
| ! | TTGAATAATCGGAATAGTTA+AGG | + | tig0017635:58028-58047 | None:intergenic | 25.0% |
| !!! | TGTGTTTTTTGTTTTGTACA+AGG | - | tig0017635:58220-58239 | Msa1361850:intron | 25.0% |
| !! | ATTCAACTTTGAAGAATTTG+AGG | - | tig0017635:58414-58433 | Msa1361850:intron | 25.0% |
| ! | TAAGTAAACAAACAATGCAA+TGG | + | tig0017635:58495-58514 | None:intergenic | 25.0% |
| !!! | TTTTCCGATTTGTTTGATTT+CGG | + | tig0017635:58594-58613 | None:intergenic | 25.0% |
| !! | CTTGTATAAAAAAAGTGTGT+TGG | - | tig0017635:58705-58724 | Msa1361850:intron | 25.0% |
| ! | TAACTAATTAAGCCTATTCT+TGG | - | tig0017635:58753-58772 | Msa1361850:intron | 25.0% |
| ! | ACATCTTATAAGAAACTGTA+TGG | + | tig0017635:58856-58875 | None:intergenic | 25.0% |
| ! | TGTTGATGTTCTTAATATTG+TGG | - | tig0017635:59131-59150 | Msa1361850:intron | 25.0% |
| !!! | TAGTTGTAGTTTGTTTGAAA+TGG | - | tig0017635:59182-59201 | Msa1361850:intron | 25.0% |
| !! | AGTTTGTTTGAAATGGTATA+AGG | - | tig0017635:59189-59208 | Msa1361850:intron | 25.0% |
| !! | GTTTGTTTGAAATGGTATAA+GGG | - | tig0017635:59190-59209 | Msa1361850:intron | 25.0% |
| !!! | TTTTGATAATCCTTTCAAAC+TGG | + | tig0017635:59352-59371 | None:intergenic | 25.0% |
| ! | TATCATTATCTTCCATTTCA+AGG | + | tig0017635:59463-59482 | None:intergenic | 25.0% |
| ! | TTGAATACAAATTCATCATC+AGG | + | tig0017635:59631-59650 | None:intergenic | 25.0% |
| ! | TGAATTTGTATTCAAGTGTA+TGG | - | tig0017635:59636-59655 | Msa1361850:intron | 25.0% |
| !!! | TCAACAGAATCTATTTCTAA+TGG | + | tig0017635:59740-59759 | None:intergenic | 25.0% |
| ! | TGTGGTAAATATCATTTGTA+AGG | - | tig0017635:59846-59865 | Msa1361850:intron | 25.0% |
| !! | ATTTTGCTTATAATAGTGAC+CGG | - | tig0017635:60039-60058 | Msa1361850:CDS | 25.0% |
| !!! | GTCTTCTATATTTTAAGAAC+TGG | + | tig0017635:60406-60425 | None:intergenic | 25.0% |
| !!! | TTGTACAGTACATATTTTGA+CGG | - | tig0017635:60430-60449 | Msa1361850:intron | 25.0% |
| !!! | TTTTTAGGTAGAAGTTCTTT+CGG | - | tig0017635:60468-60487 | Msa1361850:CDS | 25.0% |
| !! | GAACTTATAGAATTTTGTCA+AGG | - | tig0017635:60565-60584 | Msa1361850:intron | 25.0% |
| ! | AACCAAATTTGTATAACATG+AGG | - | tig0017635:60702-60721 | Msa1361850:five_prime_UTR | 25.0% |
| ! | ACCAAATTTGTATAACATGA+GGG | - | tig0017635:60703-60722 | Msa1361850:five_prime_UTR | 25.0% |
| !! | AAGCGAATTCAATTTTGAAG+CGG | - | tig0017635:57776-57795 | Msa1361850:three_prime_UTR | 30.0% |
| GAATTCTTCTTTCTCTTCTT+AGG | + | tig0017635:58162-58181 | None:intergenic | 30.0% | |
| !! | TTGTTTTGTACAAGGATGTT+TGG | - | tig0017635:58228-58247 | Msa1361850:intron | 30.0% |
| !!! | TTGATAATGTTTTGGGGTTT+AGG | - | tig0017635:58271-58290 | Msa1361850:intron | 30.0% |
| TTTGTTTACTTAACACTCCT+AGG | - | tig0017635:58503-58522 | Msa1361850:intron | 30.0% | |
| !! | TGGTTTAACTTGTTAAACCT+AGG | + | tig0017635:58523-58542 | None:intergenic | 30.0% |
| GTAACCGAAATCAAACAAAT+CGG | - | tig0017635:58587-58606 | Msa1361850:intron | 30.0% | |
| !!! | GTAGCAATGTTTTAAAAACC+AGG | + | tig0017635:58622-58641 | None:intergenic | 30.0% |
| AATTAAGCCTATTCTTGGTT+TGG | - | tig0017635:58758-58777 | Msa1361850:intron | 30.0% | |
| TAAAGTTCCAAACCAAGAAT+AGG | + | tig0017635:58768-58787 | None:intergenic | 30.0% | |
| TTTGTATAGATTGAAGAAGC+AGG | - | tig0017635:58882-58901 | Msa1361850:intron | 30.0% | |
| !! | TATTTGTCACTTTATCTAGC+TGG | - | tig0017635:59289-59308 | Msa1361850:intron | 30.0% |
| ATCCTACAGAGAATTGAAAA+AGG | + | tig0017635:59327-59346 | None:intergenic | 30.0% | |
| ! | CAAATTGTGTTGTCATTTGA+CGG | - | tig0017635:59404-59423 | Msa1361850:CDS | 30.0% |
| !! | ATGTGAAGTCAAGTTGATTT+AGG | - | tig0017635:59495-59514 | Msa1361850:CDS | 30.0% |
| AATGATGAATGCTCATACTT+AGG | - | tig0017635:59822-59841 | Msa1361850:intron | 30.0% | |
| ATGATGAATGCTCATACTTA+GGG | - | tig0017635:59823-59842 | Msa1361850:intron | 30.0% | |
| GGTAAATATCATTTGTAAGG+AGG | - | tig0017635:59849-59868 | Msa1361850:intron | 30.0% | |
| AAATTATTCATTACTCCCTC+CGG | - | tig0017635:59911-59930 | Msa1361850:intron | 30.0% | |
| !! | TAGGCATTGTTATGTGATTT+TGG | - | tig0017635:60076-60095 | Msa1361850:CDS | 30.0% |
| ! | CAATTGATTATGCTGTTTGT+TGG | - | tig0017635:60209-60228 | Msa1361850:intron | 30.0% |
| ATGATGTTGTGCATTATGTT+TGG | - | tig0017635:60533-60552 | Msa1361850:intron | 30.0% | |
| TGATGTTGTGCATTATGTTT+GGG | - | tig0017635:60534-60553 | Msa1361850:intron | 30.0% | |
| ACCCTCATGTTATACAAATT+TGG | + | tig0017635:60707-60726 | None:intergenic | 30.0% | |
| GTATAACATGAGGGTTATTT+AGG | - | tig0017635:60712-60731 | Msa1361850:five_prime_UTR | 30.0% | |
| ! | AGGGTTATTTAGGATACAAA+TGG | - | tig0017635:60722-60741 | Msa1361850:five_prime_UTR | 30.0% |
| !!! | AGCGAATTCAATTTTGAAGC+GGG | - | tig0017635:57777-57796 | Msa1361850:three_prime_UTR | 35.0% |
| ! | AAACAAGGGTTCAAGTTCTT+CGG | + | tig0017635:57956-57975 | None:intergenic | 35.0% |
| TGAGAATGGGAAGAATACTA+AGG | - | tig0017635:58295-58314 | Msa1361850:intron | 35.0% | |
| ACAATGTAGTCTGATTGAAC+TGG | + | tig0017635:58569-58588 | None:intergenic | 35.0% | |
| !!! | TTTTGCTGATTCAGCAAAAG+CGG | + | tig0017635:58914-58933 | None:intergenic | 35.0% |
| AGGATGAAACAAAGCAGATT+CGG | - | tig0017635:59067-59086 | Msa1361850:CDS | 35.0% | |
| AAAGCAGATTCGGATGTTTA+TGG | - | tig0017635:59077-59096 | Msa1361850:CDS | 35.0% | |
| !!! | GGTTGTTTTTATTAGTGCTC+TGG | - | tig0017635:59152-59171 | Msa1361850:intron | 35.0% |
| TATCAGAGCTGCATTTCTTT+AGG | - | tig0017635:59250-59269 | Msa1361850:intron | 35.0% | |
| !!! | CTCCTTTTTCAATTCTCTGT+AGG | - | tig0017635:59322-59341 | Msa1361850:intron | 35.0% |
| ATTATCTTCCATTTCAAGGC+TGG | + | tig0017635:59459-59478 | None:intergenic | 35.0% | |
| ATTCAAGTGTATGGAAAGAG+AGG | - | tig0017635:59645-59664 | Msa1361850:intron | 35.0% | |
| ACATGTTTATTCTTAGCCTC+AGG | - | tig0017635:59882-59901 | Msa1361850:intron | 35.0% | |
| TGAATAATTTCCTCTACCTG+AGG | + | tig0017635:59901-59920 | None:intergenic | 35.0% | |
| TGTTTATAATAGTGACCGGA+GGG | + | tig0017635:59929-59948 | None:intergenic | 35.0% | |
| TTGTTTATAATAGTGACCGG+AGG | + | tig0017635:59930-59949 | None:intergenic | 35.0% | |
| ! | GCATTGTTATGTGATTTTGG+AGG | - | tig0017635:60079-60098 | Msa1361850:CDS | 35.0% |
| AGAACAATGCAACAATGCAA+AGG | + | tig0017635:60115-60134 | None:intergenic | 35.0% | |
| ! | ACTAACATGTGCTGCAATTT+TGG | - | tig0017635:60234-60253 | Msa1361850:intron | 35.0% |
| !!! | CATATTTTGACGGAATGTCT+TGG | - | tig0017635:60440-60459 | Msa1361850:intron | 35.0% |
| !! | AATGTCTTGGAGCACTTTTT+AGG | - | tig0017635:60453-60472 | Msa1361850:intron | 35.0% |
| GCACAACATCATCAATAGAA+GGG | + | tig0017635:60525-60544 | None:intergenic | 35.0% | |
| TGCACAACATCATCAATAGA+AGG | + | tig0017635:60526-60545 | None:intergenic | 35.0% | |
| TTATTTATGCTAGCAGCTGT+TGG | - | tig0017635:60631-60650 | Msa1361850:five_prime_UTR | 35.0% | |
| !!! | CGCTGTCTGGATTTTGATTA+AGG | + | tig0017635:57830-57849 | None:intergenic | 40.0% |
| CAAAATCCAGACAGCGATAA+TGG | - | tig0017635:57834-57853 | Msa1361850:three_prime_UTR | 40.0% | |
| ! | TGTGTGTTTTTCCCATTTGC+AGG | - | tig0017635:57924-57943 | Msa1361850:three_prime_UTR | 40.0% |
| TTCGGTTTCATCCTGCAAAT+GGG | + | tig0017635:57938-57957 | None:intergenic | 40.0% | |
| ACGCGACTGTAATCAAACAA+GGG | + | tig0017635:57970-57989 | None:intergenic | 40.0% | |
| AACGCGACTGTAATCAAACA+AGG | + | tig0017635:57971-57990 | None:intergenic | 40.0% | |
| !! | TTTGGGGTTTAGGTTGAGAA+TGG | - | tig0017635:58281-58300 | Msa1361850:intron | 40.0% |
| !! | TTGGGGTTTAGGTTGAGAAT+GGG | - | tig0017635:58282-58301 | Msa1361850:intron | 40.0% |
| GAATGGGAAGAATACTAAGG+TGG | - | tig0017635:58298-58317 | Msa1361850:intron | 40.0% | |
| TAAGGTGGAAACAGTGAATG+TGG | - | tig0017635:58313-58332 | Msa1361850:intron | 40.0% | |
| CTCCTCATCAGTCTTCTTAT+GGG | + | tig0017635:58393-58412 | None:intergenic | 40.0% | |
| GAGTTGAATCAGTTGAATCG+CGG | + | tig0017635:58547-58566 | None:intergenic | 40.0% | |
| ACAAATCGGAAAACTGAACC+TGG | - | tig0017635:58601-58620 | Msa1361850:intron | 40.0% | |
| ! | TTTTTCACTTACGTCGTCCA+CGG | + | tig0017635:58998-59017 | None:intergenic | 40.0% |
| AGAATCTTTGCTCGTTCAGA+AGG | + | tig0017635:59030-59049 | None:intergenic | 40.0% | |
| TCTCATCTCTGTTCAAGACA+AGG | - | tig0017635:59047-59066 | Msa1361850:CDS | 40.0% | |
| GATTCGGATGTTTATGGTAC+TGG | - | tig0017635:59083-59102 | Msa1361850:CDS | 40.0% | |
| TGTAGGATGACCAGTTTGAA+AGG | - | tig0017635:59339-59358 | Msa1361850:intron | 40.0% | |
| TATGGAAAGAGAGGATGACA+GGG | - | tig0017635:59654-59673 | Msa1361850:intron | 40.0% | |
| TAAGGACCTTTCTTTCTCTG+AGG | - | tig0017635:59705-59724 | Msa1361850:intron | 40.0% | |
| TTACTGCCTCAGAGAAAGAA+AGG | + | tig0017635:59714-59733 | None:intergenic | 40.0% | |
| TTATTCTTAGCCTCAGGTAG+AGG | - | tig0017635:59888-59907 | Msa1361850:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | tig0017635:60042-60061 | Msa1361850:CDS | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | tig0017635:60043-60062 | Msa1361850:CDS | 40.0% | |
| GTTGCATTGTTCTTTGCCAT+TGG | - | tig0017635:60122-60141 | Msa1361850:CDS | 40.0% | |
| !! | CAGTTCAGAAGTGTCATTTG+TGG | - | tig0017635:60155-60174 | Msa1361850:CDS | 40.0% |
| AAATGCTACTAGAGCAGAAG+AGG | + | tig0017635:60181-60200 | None:intergenic | 40.0% | |
| ATCGAAGATCTGCATCAGAA+AGG | + | tig0017635:60295-60314 | None:intergenic | 40.0% | |
| ! | TGGAGCTGAGATTGACATTT+TGG | - | tig0017635:60317-60336 | Msa1361850:CDS | 40.0% |
| ! | GGAGCTGAGATTGACATTTT+GGG | - | tig0017635:60318-60337 | Msa1361850:CDS | 40.0% |
| ! | GAGCTGAGATTGACATTTTG+GGG | - | tig0017635:60319-60338 | Msa1361850:CDS | 40.0% |
| !! | ACATTTTGGGGACTCGTTTT+TGG | - | tig0017635:60331-60350 | Msa1361850:intron | 40.0% |
| ! | GTAGAAGTTCTTTCGGTGTA+TGG | - | tig0017635:60475-60494 | Msa1361850:CDS | 40.0% |
| AAAGGTTACAGCCTTAGAGA+GGG | + | tig0017635:60657-60676 | None:intergenic | 40.0% | |
| AAAAGGTTACAGCCTTAGAG+AGG | + | tig0017635:60658-60677 | None:intergenic | 40.0% | |
| ! | CTAAGGCTGTAACCTTTTCA+CGG | - | tig0017635:60660-60679 | Msa1361850:five_prime_UTR | 40.0% |
| ! | AATCCAGACAGCGATAATGG+CGG | - | tig0017635:57837-57856 | Msa1361850:three_prime_UTR | 45.0% |
| CTTCGGTTTCATCCTGCAAA+TGG | + | tig0017635:57939-57958 | None:intergenic | 45.0% | |
| !! | TTAAGGAGTGCTAACCATCG+AGG | + | tig0017635:58011-58030 | None:intergenic | 45.0% |
| GTAACCAATCATCATCCTCG+AGG | + | tig0017635:58343-58362 | None:intergenic | 45.0% | |
| ATTGGTTACCTTCACCACCA+AGG | - | tig0017635:58354-58373 | Msa1361850:intron | 45.0% | |
| TTGGTTACCTTCACCACCAA+GGG | - | tig0017635:58355-58374 | Msa1361850:intron | 45.0% | |
| AGTCTTCTTATGGGCCTTAC+CGG | + | tig0017635:58384-58403 | None:intergenic | 45.0% | |
| CCTCCTCATCAGTCTTCTTA+TGG | + | tig0017635:58394-58413 | None:intergenic | 45.0% | |
| CCATAAGAAGACTGATGAGG+AGG | - | tig0017635:58391-58410 | Msa1361850:intron | 45.0% | |
| TGAATCAGTTGAATCGCGGT+TGG | + | tig0017635:58543-58562 | None:intergenic | 45.0% | |
| CAATTCATTGCAACCTTCCG+TGG | - | tig0017635:58978-58997 | Msa1361850:CDS | 45.0% | |
| GTATGGAAAGAGAGGATGAC+AGG | - | tig0017635:59653-59672 | Msa1361850:intron | 45.0% | |
| AACAATGGTGAAGTGCAACG+AGG | - | tig0017635:59791-59810 | Msa1361850:intron | 45.0% | |
| GAATGCTCATACTTAGGGTG+TGG | - | tig0017635:59828-59847 | Msa1361850:intron | 45.0% | |
| !! | ACCGGAGGGAGTATTTGATT+AGG | - | tig0017635:60057-60076 | Msa1361850:CDS | 45.0% |
| GCCTAATCAAATACTCCCTC+CGG | + | tig0017635:60061-60080 | None:intergenic | 45.0% | |
| GAACTGTAGAGACAAGCCAA+TGG | + | tig0017635:60141-60160 | None:intergenic | 45.0% | |
| CTGATGCAGATCTTCGATCA+TGG | - | tig0017635:60297-60316 | Msa1361850:CDS | 45.0% | |
| ! | GTTCTTTCGGTGTATGGCAT+AGG | - | tig0017635:60481-60500 | Msa1361850:CDS | 45.0% |
| !!! | TATTTTAGAATAAAAATAAA+AGG | + | tig0017635:58090-58109 | None:intergenic | 5.0% |
| !!! | AATAATTAATGATTATATTT+TGG | + | tig0017635:60610-60629 | None:intergenic | 5.0% |
| CCATCGAGGCACACGATATT+GGG | + | tig0017635:57997-58016 | None:intergenic | 50.0% | |
| ACCATCGAGGCACACGATAT+TGG | + | tig0017635:57998-58017 | None:intergenic | 50.0% | |
| GGTGGAAACAGTGAATGTGG+TGG | - | tig0017635:58316-58335 | Msa1361850:intron | 50.0% | |
| TGGACCTCGAGGATGATGAT+TGG | - | tig0017635:58336-58355 | Msa1361850:intron | 50.0% | |
| GGCCCATAAGAAGACTGATG+AGG | - | tig0017635:58388-58407 | Msa1361850:intron | 50.0% | |
| AGGCAGGCAGATCAGAAACA+TGG | + | tig0017635:59216-59235 | None:intergenic | 50.0% | |
| TTCCATTTCAAGGCTGGCAG+GGG | + | tig0017635:59453-59472 | None:intergenic | 50.0% | |
| CTTCCATTTCAAGGCTGGCA+GGG | + | tig0017635:59454-59473 | None:intergenic | 50.0% | |
| TCTTCCATTTCAAGGCTGGC+AGG | + | tig0017635:59455-59474 | None:intergenic | 50.0% | |
| GAAAGAGAGGATGACAGGGT+GGG | - | tig0017635:59658-59677 | Msa1361850:intron | 50.0% | |
| AAAGAGAGGATGACAGGGTG+GGG | - | tig0017635:59659-59678 | Msa1361850:intron | 50.0% | |
| CCACAACAACTGCCGTGAAA+AGG | + | tig0017635:60675-60694 | None:intergenic | 50.0% | |
| ! | CCTTTTCACGGCAGTTGTTG+TGG | - | tig0017635:60672-60691 | Msa1361850:five_prime_UTR | 50.0% |
| TCACCGCCATTATCGCTGTC+TGG | + | tig0017635:57843-57862 | None:intergenic | 55.0% | |
| CCCAATATCGTGTGCCTCGA+TGG | - | tig0017635:57994-58013 | Msa1361850:three_prime_UTR | 55.0% | |
| !! | AGTGAATGTGGTGGACCTCG+AGG | - | tig0017635:58325-58344 | Msa1361850:intron | 55.0% |
| TCACTTACGTCGTCCACGGA+AGG | + | tig0017635:58994-59013 | None:intergenic | 55.0% | |
| AACCCCTGCCAGCCTTGAAA+TGG | - | tig0017635:59448-59467 | Msa1361850:CDS | 55.0% | |
| GGAAAGAGAGGATGACAGGG+TGG | - | tig0017635:59657-59676 | Msa1361850:intron | 55.0% | |
| AAGAGAGGATGACAGGGTGG+GGG | - | tig0017635:59660-59679 | Msa1361850:intron | 55.0% | |
| CCTTCACCACCAAGGGTCAC+CGG | - | tig0017635:58362-58381 | Msa1361850:intron | 60.0% | |
| ACCACCAAGGGTCACCGGTA+AGG | - | tig0017635:58367-58386 | Msa1361850:intron | 60.0% | |
| GCAGCTGTTGGCCCTCTCTA+AGG | - | tig0017635:60643-60662 | Msa1361850:five_prime_UTR | 60.0% | |
| !! | CCGGTGACCCTTGGTGGTGA+AGG | + | tig0017635:58365-58384 | None:intergenic | 65.0% |
| GCCTTACCGGTGACCCTTGG+TGG | + | tig0017635:58371-58390 | None:intergenic | 65.0% | |
| TGGGCCTTACCGGTGACCCT+TGG | + | tig0017635:58374-58393 | None:intergenic | 65.0% | |
| AGAGGATGACAGGGTGGGGG+TGG | - | tig0017635:59663-59682 | Msa1361850:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017635 | gene | 57708 | 60765 | 57708 | ID=Msa1361850;Name=Msa1361850 |
| tig0017635 | mRNA | 57708 | 60765 | 57708 | ID=Msa1361850-mRNA-1;Parent=Msa1361850;Name=Msa1361850-mRNA-1;_AED=0.05;_eAED=0.05;_QI=145|1|1|1|0.83|0.71|7|465|220 |
| tig0017635 | exon | 57708 | 58167 | 57708 | ID=Msa1361850-mRNA-1:exon:12683;Parent=Msa1361850-mRNA-1 |
| tig0017635 | exon | 58957 | 59129 | 58957 | ID=Msa1361850-mRNA-1:exon:12682;Parent=Msa1361850-mRNA-1 |
| tig0017635 | exon | 59375 | 59582 | 59375 | ID=Msa1361850-mRNA-1:exon:12681;Parent=Msa1361850-mRNA-1 |
| tig0017635 | exon | 60038 | 60180 | 60038 | ID=Msa1361850-mRNA-1:exon:12680;Parent=Msa1361850-mRNA-1 |
| tig0017635 | exon | 60276 | 60343 | 60276 | ID=Msa1361850-mRNA-1:exon:12679;Parent=Msa1361850-mRNA-1 |
| tig0017635 | exon | 60458 | 60527 | 60458 | ID=Msa1361850-mRNA-1:exon:12678;Parent=Msa1361850-mRNA-1 |
| tig0017635 | exon | 60615 | 60765 | 60615 | ID=Msa1361850-mRNA-1:exon:12677;Parent=Msa1361850-mRNA-1 |
| tig0017635 | five_prime_UTR | 60621 | 60765 | 60621 | ID=Msa1361850-mRNA-1:five_prime_utr;Parent=Msa1361850-mRNA-1 |
| tig0017635 | CDS | 60615 | 60620 | 60615 | ID=Msa1361850-mRNA-1:cds;Parent=Msa1361850-mRNA-1 |
| tig0017635 | CDS | 60458 | 60527 | 60458 | ID=Msa1361850-mRNA-1:cds;Parent=Msa1361850-mRNA-1 |
| tig0017635 | CDS | 60276 | 60343 | 60276 | ID=Msa1361850-mRNA-1:cds;Parent=Msa1361850-mRNA-1 |
| tig0017635 | CDS | 60038 | 60180 | 60038 | ID=Msa1361850-mRNA-1:cds;Parent=Msa1361850-mRNA-1 |
| tig0017635 | CDS | 59375 | 59582 | 59375 | ID=Msa1361850-mRNA-1:cds;Parent=Msa1361850-mRNA-1 |
| tig0017635 | CDS | 58962 | 59129 | 58962 | ID=Msa1361850-mRNA-1:cds;Parent=Msa1361850-mRNA-1 |
| tig0017635 | three_prime_UTR | 58957 | 58961 | 58957 | ID=Msa1361850-mRNA-1:three_prime_utr;Parent=Msa1361850-mRNA-1 |
| tig0017635 | three_prime_UTR | 57708 | 58167 | 57708 | ID=Msa1361850-mRNA-1:three_prime_utr;Parent=Msa1361850-mRNA-1 |
| Gene Sequence |
| Protein sequence |
