AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1039880


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039880 MtrunA17_Chr7g0271781 96.682 211 7 0 1 211 5 215 9.94e-152 419
Msa1039880 MtrunA17_Chr7g0271791 80.220 182 35 1 22 202 1 182 2.93e-105 301
Msa1039880 MtrunA17_Chr1g0192771 74.667 150 38 0 1 150 3 152 3.27e-80 238
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1039880 AT1G56423.2 66.010 203 69 0 1 203 1 203 9.58e-98 285
Msa1039880 AT1G56423.1 66.010 203 69 0 1 203 1 203 1.09e-97 285

Find 77 sgRNAs with CRISPR-Local

Find 261 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGAGTTTGTTGTTAATAAT+TGG 0.109210 7_1:-77224255 Msa1039880:five_prime_UTR
ATTATTAAATTGCTTTGATA+TGG 0.171309 7_1:-77223368 Msa1039880:CDS
TAATGTAAACTTCCCACTTT+TGG 0.220946 7_1:+77223387 None:intergenic
AAATGCACCACAATTGAAAA+TGG 0.277979 7_1:+77224388 None:intergenic
TGTGATGCGGTTGGCCTTAC+GGG 0.286048 7_1:+77223150 None:intergenic
CCTCTAGAGCTGTCATAAAT+AGG 0.294176 7_1:+77222802 None:intergenic
CTCGACCATGAAAAGGGATT+TGG 0.302829 7_1:+77224414 None:intergenic
AGAGGAACTGGTACGTTGTT+TGG 0.307326 7_1:-77223052 Msa1039880:CDS
TCATCGAATGCTTCTACAAT+AGG 0.310825 7_1:+77224289 None:intergenic
GAGCAAAGGCTTGGAAGATT+TGG 0.325168 7_1:-77223004 Msa1039880:CDS
CTGTGATGCGGTTGGCCTTA+CGG 0.349279 7_1:+77223149 None:intergenic
TGAGTTTGTTGTTAATAATT+GGG 0.352915 7_1:-77224254 Msa1039880:five_prime_UTR
AACTTACGGTGTAGGTTTCA+TGG 0.367784 7_1:-77223029 Msa1039880:CDS
TTATTAAATTGCTTTGATAT+GGG 0.378126 7_1:-77223367 Msa1039880:CDS
GGAAGATTTGGTTATCTTGT+TGG 0.387002 7_1:-77222992 Msa1039880:CDS
TTATCTTGTTGGAAGTCAAT+TGG 0.396840 7_1:-77222981 Msa1039880:CDS
TTGGAAGTCAATTGGGAAGT+TGG 0.398362 7_1:-77222973 Msa1039880:CDS
AGTTGGATTGGAAGTAGAAT+AGG 0.408974 7_1:-77222956 Msa1039880:CDS
TCTTGTTGATGCTGCTTCAC+AGG 0.412869 7_1:-77223239 Msa1039880:CDS
AATTGCTTTGATATGGGCTC+AGG 0.437174 7_1:-77223361 Msa1039880:CDS
GTGCATTTCGTGTTGCAGTA+TGG 0.438736 7_1:-77222905 Msa1039880:CDS
TATCTTGTTGGAAGTCAATT+GGG 0.442064 7_1:-77222980 Msa1039880:CDS
GAGGGATTCCTCAGAGGAAC+TGG 0.444285 7_1:-77223064 Msa1039880:CDS
GGTACGTTGTTTGGAACTTA+CGG 0.445217 7_1:-77223043 Msa1039880:CDS
TATTCATAATCTACAAAGAA+TGG 0.445916 7_1:+77222777 None:intergenic
AGTCAATTGGGAAGTTGGAT+TGG 0.450366 7_1:-77222968 Msa1039880:CDS
ATTATGAATATATCTATTAA+CGG 0.452424 7_1:-77222764 Msa1039880:three_prime_UTR
CATCGAATGCTTCTACAATA+GGG 0.454519 7_1:+77224290 None:intergenic
TGTCATAAATAGGAATTTCA+TGG 0.455133 7_1:+77222812 None:intergenic
ATGGACTCTCGACCATGAAA+AGG 0.458378 7_1:+77224407 None:intergenic
GTCCCATCCGGAAGAGATGA+TGG 0.461346 7_1:+77223123 None:intergenic
ATGGTATATGATGTGGCTAA+TGG 0.468429 7_1:-77222929 Msa1039880:CDS
AAGAATCCCTCTCACGAGAA+AGG 0.480196 7_1:+77224343 None:intergenic
TTTGAAGCTGTTTACTATGG+TGG 0.481190 7_1:-77223097 Msa1039880:CDS
GTTTCTTCCATTCCATGCCA+TGG 0.486159 7_1:-77224214 Msa1039880:exon
CAATGATGGCAGATACAGAT+AGG 0.486572 7_1:+77224163 None:intergenic
AGAATCCCTCTCACGAGAAA+GGG 0.494223 7_1:+77224344 None:intergenic
GAGAACGCGTCATCCAAAAG+TGG 0.497930 7_1:-77223400 Msa1039880:CDS
GTTGGATTGGAAGTAGAATA+GGG 0.502946 7_1:-77222955 Msa1039880:CDS
ACAGGTCCCATCATCTCTTC+CGG 0.504313 7_1:-77223130 Msa1039880:CDS
CTATCTCCCTTTCTCGTGAG+AGG 0.508533 7_1:-77224350 Msa1039880:five_prime_UTR
ATCATTGTTCTTAGCATCAC+AGG 0.509850 7_1:-77224147 Msa1039880:intron
CTTGTTGATGCTGCTTCACA+GGG 0.511056 7_1:-77223238 Msa1039880:CDS
TATCTCCCTTTCTCGTGAGA+GGG 0.512986 7_1:-77224349 Msa1039880:five_prime_UTR
CAGCATCAACAAGAGCAGAT+TGG 0.514551 7_1:+77223248 None:intergenic
GAATGGAAGAAACAGTTAAA+CGG 0.515918 7_1:+77224224 None:intergenic
CCTATTTATGACAGCTCTAG+AGG 0.524126 7_1:-77222802 Msa1039880:three_prime_UTR
TGGACTCTCGACCATGAAAA+GGG 0.525887 7_1:+77224408 None:intergenic
TTGTTTGGAACTTACGGTGT+AGG 0.526991 7_1:-77223037 Msa1039880:CDS
TGAAAATCCATGGCATGGAA+TGG 0.527417 7_1:+77224207 None:intergenic
CGTAAGGCCAACCGCATCAC+AGG 0.530423 7_1:-77223148 Msa1039880:CDS
ACTTACGGTGTAGGTTTCAT+GGG 0.535716 7_1:-77223028 Msa1039880:CDS
TCCCATCATCTCTTCCGGAT+GGG 0.537093 7_1:-77223125 Msa1039880:CDS
GGCGAAATTGGCTACCCGTA+AGG 0.540905 7_1:-77223164 Msa1039880:CDS
GGCTCAGGAACGCTAGCATG+TGG 0.544815 7_1:-77223346 Msa1039880:CDS
TAAATAGGAATTTCATGGAA+AGG 0.552173 7_1:+77222817 None:intergenic
GTCCCATCATCTCTTCCGGA+TGG 0.557344 7_1:-77223126 Msa1039880:CDS
TCTGAGGAATCCCTCTGTAA+AGG 0.559119 7_1:+77223072 None:intergenic
TCTTCTGAAAATCCATGGCA+TGG 0.563833 7_1:+77224202 None:intergenic
CTCAGGAACGCTAGCATGTG+GGG 0.570098 7_1:-77223344 Msa1039880:CDS
TGGAAGTAGAATAGGGCTCA+TGG 0.576358 7_1:-77222948 Msa1039880:CDS
TCTCCTCTTCTGAAAATCCA+TGG 0.583117 7_1:+77224197 None:intergenic
TATGGTGGTACCTTTACAGA+GGG 0.585211 7_1:-77223082 Msa1039880:CDS
GCTCAGGAACGCTAGCATGT+GGG 0.607284 7_1:-77223345 Msa1039880:CDS
TCCCATCCGGAAGAGATGAT+GGG 0.613844 7_1:+77223124 None:intergenic
TGTGATGCTAAGAACAATGA+TGG 0.627342 7_1:+77224149 None:intergenic
GATGGGACCTGTGATGCGGT+TGG 0.637538 7_1:+77223141 None:intergenic
AGAACGCGTCATCCAAAAGT+GGG 0.637848 7_1:-77223399 Msa1039880:CDS
AGGGCTCATGGTATATGATG+TGG 0.638967 7_1:-77222936 Msa1039880:CDS
GAAAAGGGATTTGGATTGTG+TGG 0.644574 7_1:+77224423 None:intergenic
CTATGGTGGTACCTTTACAG+AGG 0.649919 7_1:-77223083 Msa1039880:CDS
CTTACGGTGTAGGTTTCATG+GGG 0.659609 7_1:-77223027 Msa1039880:CDS
TTTACAGAGGGATTCCTCAG+AGG 0.683356 7_1:-77223070 Msa1039880:CDS
AAGGGATTTGGATTGTGTGG+CGG 0.699732 7_1:+77224426 None:intergenic
ACAACGTACCAGTTCCTCTG+AGG 0.700531 7_1:+77223056 None:intergenic
AGATGATGGGACCTGTGATG+CGG 0.719348 7_1:+77223137 None:intergenic
TTACGGTGTAGGTTTCATGG+GGG 0.787530 7_1:-77223026 Msa1039880:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATTATAATTAATGAAAA+TGG + chr7_1:77223607-77223626 None:intergenic 10.0%
!! ATTATGAATATATCTATTAA+CGG - chr7_1:77224309-77224328 Msa1039880:five_prime_UTR 10.0%
!! GAAATTATAATTAATGAAAA+TGG + chr7_1:77223607-77223626 None:intergenic 10.0%
!! ATTATGAATATATCTATTAA+CGG - chr7_1:77224309-77224328 Msa1039880:five_prime_UTR 10.0%
!! ATTTGAATTTATCTATCTAA+TGG + chr7_1:77223446-77223465 None:intergenic 15.0%
!! ATTATTAAATTGCTTTGATA+TGG - chr7_1:77223705-77223724 Msa1039880:intron 15.0%
!! TTATTAAATTGCTTTGATAT+GGG - chr7_1:77223706-77223725 Msa1039880:intron 15.0%
!! ATTTGAATTTATCTATCTAA+TGG + chr7_1:77223446-77223465 None:intergenic 15.0%
!! ATTATTAAATTGCTTTGATA+TGG - chr7_1:77223705-77223724 Msa1039880:intron 15.0%
!! TTATTAAATTGCTTTGATAT+GGG - chr7_1:77223706-77223725 Msa1039880:intron 15.0%
!!! ATGAGTTTGTTGTTAATAAT+TGG - chr7_1:77222818-77222837 Msa1039880:three_prime_UTR 20.0%
!!! TGAGTTTGTTGTTAATAATT+GGG - chr7_1:77222819-77222838 Msa1039880:three_prime_UTR 20.0%
!! GGTTCAAAAATAGTATTAAT+GGG + chr7_1:77222966-77222985 None:intergenic 20.0%
!! AGGTTCAAAAATAGTATTAA+TGG + chr7_1:77222967-77222986 None:intergenic 20.0%
!!! TAATTGTCTTTATAACGTTT+TGG - chr7_1:77223014-77223033 Msa1039880:CDS 20.0%
!!! AATTGTCTTTATAACGTTTT+GGG - chr7_1:77223015-77223034 Msa1039880:CDS 20.0%
!!! TTTTTTGAAAAAGTGATGTA+AGG + chr7_1:77223525-77223544 None:intergenic 20.0%
!! TATTCATAATCTACAAAGAA+TGG + chr7_1:77224299-77224318 None:intergenic 20.0%
!! TGTGAAAAGAAAAACAATAT+TGG + chr7_1:77224385-77224404 None:intergenic 20.0%
!!! TTCTTTTCACATTATATGAT+TGG - chr7_1:77224394-77224413 Msa1039880:five_prime_UTR 20.0%
!!! ATGAGTTTGTTGTTAATAAT+TGG - chr7_1:77222818-77222837 Msa1039880:three_prime_UTR 20.0%
!!! TGAGTTTGTTGTTAATAATT+GGG - chr7_1:77222819-77222838 Msa1039880:three_prime_UTR 20.0%
!! GGTTCAAAAATAGTATTAAT+GGG + chr7_1:77222966-77222985 None:intergenic 20.0%
!! AGGTTCAAAAATAGTATTAA+TGG + chr7_1:77222967-77222986 None:intergenic 20.0%
!!! TAATTGTCTTTATAACGTTT+TGG - chr7_1:77223014-77223033 Msa1039880:CDS 20.0%
!!! AATTGTCTTTATAACGTTTT+GGG - chr7_1:77223015-77223034 Msa1039880:CDS 20.0%
!!! TTTTTTGAAAAAGTGATGTA+AGG + chr7_1:77223525-77223544 None:intergenic 20.0%
!! TATTCATAATCTACAAAGAA+TGG + chr7_1:77224299-77224318 None:intergenic 20.0%
!! TGTGAAAAGAAAAACAATAT+TGG + chr7_1:77224385-77224404 None:intergenic 20.0%
!!! TTCTTTTCACATTATATGAT+TGG - chr7_1:77224394-77224413 Msa1039880:five_prime_UTR 20.0%
!!! AATTTTTGGGGTCAATAATT+TGG + chr7_1:77223106-77223125 None:intergenic 25.0%
! AAATTATTGACCCCAAAAAT+TGG - chr7_1:77223105-77223124 Msa1039880:CDS 25.0%
!!! TTTTTTGAAGCTGTTTACTA+TGG - chr7_1:77223973-77223992 Msa1039880:intron 25.0%
! TAAATAGGAATTTCATGGAA+AGG + chr7_1:77224259-77224278 None:intergenic 25.0%
! TGTCATAAATAGGAATTTCA+TGG + chr7_1:77224264-77224283 None:intergenic 25.0%
!!! AATTTTTGGGGTCAATAATT+TGG + chr7_1:77223106-77223125 None:intergenic 25.0%
! AAATTATTGACCCCAAAAAT+TGG - chr7_1:77223105-77223124 Msa1039880:CDS 25.0%
!!! TTTTTTGAAGCTGTTTACTA+TGG - chr7_1:77223973-77223992 Msa1039880:intron 25.0%
! TAAATAGGAATTTCATGGAA+AGG + chr7_1:77224259-77224278 None:intergenic 25.0%
! TGTCATAAATAGGAATTTCA+TGG + chr7_1:77224264-77224283 None:intergenic 25.0%
AAATGCACCACAATTGAAAA+TGG + chr7_1:77222688-77222707 None:intergenic 30.0%
GAATGGAAGAAACAGTTAAA+CGG + chr7_1:77222852-77222871 None:intergenic 30.0%
!!! AACGTTTTGGGTTCAATTAA+CGG - chr7_1:77223027-77223046 Msa1039880:CDS 30.0%
TCAATTAACGGCAGTAATTT+AGG - chr7_1:77223039-77223058 Msa1039880:CDS 30.0%
CAATTAACGGCAGTAATTTA+GGG - chr7_1:77223040-77223059 Msa1039880:CDS 30.0%
AATTAACGGCAGTAATTTAG+GGG - chr7_1:77223041-77223060 Msa1039880:CDS 30.0%
TGAATAAGATAAACCTGATC+AGG + chr7_1:77223073-77223092 None:intergenic 30.0%
! CTTTCTTTTCTATTCTAGCA+TGG - chr7_1:77223142-77223161 Msa1039880:CDS 30.0%
! CTATTCTAGCATGGATTTTA+TGG - chr7_1:77223151-77223170 Msa1039880:CDS 30.0%
AATTGTTCCTTACATCAAAG+TGG - chr7_1:77223543-77223562 Msa1039880:intron 30.0%
TGGGTTCTCATATTTAACTA+TGG - chr7_1:77223578-77223597 Msa1039880:intron 30.0%
! TAATGTAAACTTCCCACTTT+TGG + chr7_1:77223689-77223708 None:intergenic 30.0%
TTATCTTGTTGGAAGTCAAT+TGG - chr7_1:77224092-77224111 Msa1039880:intron 30.0%
TATCTTGTTGGAAGTCAATT+GGG - chr7_1:77224093-77224112 Msa1039880:intron 30.0%
AAATGCACCACAATTGAAAA+TGG + chr7_1:77222688-77222707 None:intergenic 30.0%
GAATGGAAGAAACAGTTAAA+CGG + chr7_1:77222852-77222871 None:intergenic 30.0%
!!! AACGTTTTGGGTTCAATTAA+CGG - chr7_1:77223027-77223046 Msa1039880:CDS 30.0%
TCAATTAACGGCAGTAATTT+AGG - chr7_1:77223039-77223058 Msa1039880:CDS 30.0%
CAATTAACGGCAGTAATTTA+GGG - chr7_1:77223040-77223059 Msa1039880:CDS 30.0%
AATTAACGGCAGTAATTTAG+GGG - chr7_1:77223041-77223060 Msa1039880:CDS 30.0%
TGAATAAGATAAACCTGATC+AGG + chr7_1:77223073-77223092 None:intergenic 30.0%
! CTTTCTTTTCTATTCTAGCA+TGG - chr7_1:77223142-77223161 Msa1039880:CDS 30.0%
! CTATTCTAGCATGGATTTTA+TGG - chr7_1:77223151-77223170 Msa1039880:CDS 30.0%
AATTGTTCCTTACATCAAAG+TGG - chr7_1:77223543-77223562 Msa1039880:intron 30.0%
TGGGTTCTCATATTTAACTA+TGG - chr7_1:77223578-77223597 Msa1039880:intron 30.0%
! TAATGTAAACTTCCCACTTT+TGG + chr7_1:77223689-77223708 None:intergenic 30.0%
TTATCTTGTTGGAAGTCAAT+TGG - chr7_1:77224092-77224111 Msa1039880:intron 30.0%
TATCTTGTTGGAAGTCAATT+GGG - chr7_1:77224093-77224112 Msa1039880:intron 30.0%
! ACAATCCAAATCCCTTTTCA+TGG - chr7_1:77222654-77222673 Msa1039880:three_prime_UTR 35.0%
! TTCAATTGTGGTGCATTTTC+TGG - chr7_1:77222690-77222709 Msa1039880:three_prime_UTR 35.0%
CATCGAATGCTTCTACAATA+GGG + chr7_1:77222786-77222805 None:intergenic 35.0%
TCATCGAATGCTTCTACAAT+AGG + chr7_1:77222787-77222806 None:intergenic 35.0%
! ATTTTCAGAAGAGGAGAGTT+CGG - chr7_1:77222882-77222901 Msa1039880:exon 35.0%
TGTGATGCTAAGAACAATGA+TGG + chr7_1:77222927-77222946 None:intergenic 35.0%
ATCATTGTTCTTAGCATCAC+AGG - chr7_1:77222926-77222945 Msa1039880:CDS 35.0%
TTGAATTGAGTCTGATGTGA+AGG + chr7_1:77222987-77223006 None:intergenic 35.0%
AAGCTATCTTGAAGAGTTTG+TGG - chr7_1:77223337-77223356 Msa1039880:CDS 35.0%
!!! GCATGTTTTTCTGAAGCAAT+TGG + chr7_1:77223868-77223887 None:intergenic 35.0%
!!! CGCTTTTTTACCTTGTTTCA+GGG + chr7_1:77223890-77223909 None:intergenic 35.0%
CCTGAAACAAGGTAAAAAAG+CGG - chr7_1:77223888-77223907 Msa1039880:intron 35.0%
! TTTGAAGCTGTTTACTATGG+TGG - chr7_1:77223976-77223995 Msa1039880:intron 35.0%
! GGAAGATTTGGTTATCTTGT+TGG - chr7_1:77224081-77224100 Msa1039880:intron 35.0%
! AGTTGGATTGGAAGTAGAAT+AGG - chr7_1:77224117-77224136 Msa1039880:intron 35.0%
! GTTGGATTGGAAGTAGAATA+GGG - chr7_1:77224118-77224137 Msa1039880:intron 35.0%
ATGGTATATGATGTGGCTAA+TGG - chr7_1:77224144-77224163 Msa1039880:intron 35.0%
! ACAATCCAAATCCCTTTTCA+TGG - chr7_1:77222654-77222673 Msa1039880:three_prime_UTR 35.0%
! TTCAATTGTGGTGCATTTTC+TGG - chr7_1:77222690-77222709 Msa1039880:three_prime_UTR 35.0%
CATCGAATGCTTCTACAATA+GGG + chr7_1:77222786-77222805 None:intergenic 35.0%
TCATCGAATGCTTCTACAAT+AGG + chr7_1:77222787-77222806 None:intergenic 35.0%
! ATTTTCAGAAGAGGAGAGTT+CGG - chr7_1:77222882-77222901 Msa1039880:exon 35.0%
TGTGATGCTAAGAACAATGA+TGG + chr7_1:77222927-77222946 None:intergenic 35.0%
ATCATTGTTCTTAGCATCAC+AGG - chr7_1:77222926-77222945 Msa1039880:CDS 35.0%
TTGAATTGAGTCTGATGTGA+AGG + chr7_1:77222987-77223006 None:intergenic 35.0%
AAGCTATCTTGAAGAGTTTG+TGG - chr7_1:77223337-77223356 Msa1039880:CDS 35.0%
!!! GCATGTTTTTCTGAAGCAAT+TGG + chr7_1:77223868-77223887 None:intergenic 35.0%
!!! CGCTTTTTTACCTTGTTTCA+GGG + chr7_1:77223890-77223909 None:intergenic 35.0%
CCTGAAACAAGGTAAAAAAG+CGG - chr7_1:77223888-77223907 Msa1039880:intron 35.0%
! TTTGAAGCTGTTTACTATGG+TGG - chr7_1:77223976-77223995 Msa1039880:intron 35.0%
! GGAAGATTTGGTTATCTTGT+TGG - chr7_1:77224081-77224100 Msa1039880:intron 35.0%
! AGTTGGATTGGAAGTAGAAT+AGG - chr7_1:77224117-77224136 Msa1039880:intron 35.0%
! GTTGGATTGGAAGTAGAATA+GGG - chr7_1:77224118-77224137 Msa1039880:intron 35.0%
ATGGTATATGATGTGGCTAA+TGG - chr7_1:77224144-77224163 Msa1039880:intron 35.0%
GAAAAGGGATTTGGATTGTG+TGG + chr7_1:77222653-77222672 None:intergenic 40.0%
! CGAGAGTCCATTTTCAATTG+TGG - chr7_1:77222678-77222697 Msa1039880:three_prime_UTR 40.0%
TGAAAATCCATGGCATGGAA+TGG + chr7_1:77222869-77222888 None:intergenic 40.0%
! TCTTCTGAAAATCCATGGCA+TGG + chr7_1:77222874-77222893 None:intergenic 40.0%
! ATGCCATGGATTTTCAGAAG+AGG - chr7_1:77222873-77222892 Msa1039880:exon 40.0%
! TCTCCTCTTCTGAAAATCCA+TGG + chr7_1:77222879-77222898 None:intergenic 40.0%
CAATGATGGCAGATACAGAT+AGG + chr7_1:77222913-77222932 None:intergenic 40.0%
TTGACCCCAAAAATTGGCAT+AGG - chr7_1:77223111-77223130 Msa1039880:CDS 40.0%
! GTCTCCTATGCCAATTTTTG+GGG + chr7_1:77223118-77223137 None:intergenic 40.0%
! CGTCTCCTATGCCAATTTTT+GGG + chr7_1:77223119-77223138 None:intergenic 40.0%
! TCGTCTCCTATGCCAATTTT+TGG + chr7_1:77223120-77223139 None:intergenic 40.0%
TTATTACCACATCACGACAC+AGG + chr7_1:77223486-77223505 None:intergenic 40.0%
AGGGAAACCACTTTGATGTA+AGG + chr7_1:77223553-77223572 None:intergenic 40.0%
AATATGAGAACCCAGAGCTA+GGG + chr7_1:77223572-77223591 None:intergenic 40.0%
AAATATGAGAACCCAGAGCT+AGG + chr7_1:77223573-77223592 None:intergenic 40.0%
AATTGCTTTGATATGGGCTC+AGG - chr7_1:77223712-77223731 Msa1039880:intron 40.0%
GAAAAACATGCCCTGAAACA+AGG - chr7_1:77223877-77223896 Msa1039880:intron 40.0%
!!! CCGCTTTTTTACCTTGTTTC+AGG + chr7_1:77223891-77223910 None:intergenic 40.0%
AGGTAAAAAAGCGGCGAAAT+TGG - chr7_1:77223897-77223916 Msa1039880:intron 40.0%
AGCTTCAAAAAAGTCCCATC+CGG + chr7_1:77223965-77223984 None:intergenic 40.0%
TATGGTGGTACCTTTACAGA+GGG - chr7_1:77223991-77224010 Msa1039880:intron 40.0%
! GGTACGTTGTTTGGAACTTA+CGG - chr7_1:77224030-77224049 Msa1039880:intron 40.0%
! TTGTTTGGAACTTACGGTGT+AGG - chr7_1:77224036-77224055 Msa1039880:intron 40.0%
AACTTACGGTGTAGGTTTCA+TGG - chr7_1:77224044-77224063 Msa1039880:intron 40.0%
ACTTACGGTGTAGGTTTCAT+GGG - chr7_1:77224045-77224064 Msa1039880:intron 40.0%
TTGGAAGTCAATTGGGAAGT+TGG - chr7_1:77224100-77224119 Msa1039880:intron 40.0%
AGTCAATTGGGAAGTTGGAT+TGG - chr7_1:77224105-77224124 Msa1039880:intron 40.0%
!! CCTCTAGAGCTGTCATAAAT+AGG + chr7_1:77224274-77224293 None:intergenic 40.0%
! CCTATTTATGACAGCTCTAG+AGG - chr7_1:77224271-77224290 Msa1039880:five_prime_UTR 40.0%
GTGTTCTTATTCTCTGTGTC+TGG - chr7_1:77224425-77224444 Msa1039880:five_prime_UTR 40.0%
GAAAAGGGATTTGGATTGTG+TGG + chr7_1:77222653-77222672 None:intergenic 40.0%
! CGAGAGTCCATTTTCAATTG+TGG - chr7_1:77222678-77222697 Msa1039880:three_prime_UTR 40.0%
TGAAAATCCATGGCATGGAA+TGG + chr7_1:77222869-77222888 None:intergenic 40.0%
! TCTTCTGAAAATCCATGGCA+TGG + chr7_1:77222874-77222893 None:intergenic 40.0%
! ATGCCATGGATTTTCAGAAG+AGG - chr7_1:77222873-77222892 Msa1039880:exon 40.0%
! TCTCCTCTTCTGAAAATCCA+TGG + chr7_1:77222879-77222898 None:intergenic 40.0%
CAATGATGGCAGATACAGAT+AGG + chr7_1:77222913-77222932 None:intergenic 40.0%
TTGACCCCAAAAATTGGCAT+AGG - chr7_1:77223111-77223130 Msa1039880:CDS 40.0%
! GTCTCCTATGCCAATTTTTG+GGG + chr7_1:77223118-77223137 None:intergenic 40.0%
! CGTCTCCTATGCCAATTTTT+GGG + chr7_1:77223119-77223138 None:intergenic 40.0%
! TCGTCTCCTATGCCAATTTT+TGG + chr7_1:77223120-77223139 None:intergenic 40.0%
TTATTACCACATCACGACAC+AGG + chr7_1:77223486-77223505 None:intergenic 40.0%
AGGGAAACCACTTTGATGTA+AGG + chr7_1:77223553-77223572 None:intergenic 40.0%
AATATGAGAACCCAGAGCTA+GGG + chr7_1:77223572-77223591 None:intergenic 40.0%
AAATATGAGAACCCAGAGCT+AGG + chr7_1:77223573-77223592 None:intergenic 40.0%
AATTGCTTTGATATGGGCTC+AGG - chr7_1:77223712-77223731 Msa1039880:intron 40.0%
GAAAAACATGCCCTGAAACA+AGG - chr7_1:77223877-77223896 Msa1039880:intron 40.0%
!!! CCGCTTTTTTACCTTGTTTC+AGG + chr7_1:77223891-77223910 None:intergenic 40.0%
AGGTAAAAAAGCGGCGAAAT+TGG - chr7_1:77223897-77223916 Msa1039880:intron 40.0%
AGCTTCAAAAAAGTCCCATC+CGG + chr7_1:77223965-77223984 None:intergenic 40.0%
TATGGTGGTACCTTTACAGA+GGG - chr7_1:77223991-77224010 Msa1039880:intron 40.0%
! GGTACGTTGTTTGGAACTTA+CGG - chr7_1:77224030-77224049 Msa1039880:intron 40.0%
! TTGTTTGGAACTTACGGTGT+AGG - chr7_1:77224036-77224055 Msa1039880:intron 40.0%
AACTTACGGTGTAGGTTTCA+TGG - chr7_1:77224044-77224063 Msa1039880:intron 40.0%
ACTTACGGTGTAGGTTTCAT+GGG - chr7_1:77224045-77224064 Msa1039880:intron 40.0%
TTGGAAGTCAATTGGGAAGT+TGG - chr7_1:77224100-77224119 Msa1039880:intron 40.0%
AGTCAATTGGGAAGTTGGAT+TGG - chr7_1:77224105-77224124 Msa1039880:intron 40.0%
!! CCTCTAGAGCTGTCATAAAT+AGG + chr7_1:77224274-77224293 None:intergenic 40.0%
! CCTATTTATGACAGCTCTAG+AGG - chr7_1:77224271-77224290 Msa1039880:five_prime_UTR 40.0%
CTCGACCATGAAAAGGGATT+TGG + chr7_1:77222662-77222681 None:intergenic 45.0%
TGGACTCTCGACCATGAAAA+GGG + chr7_1:77222668-77222687 None:intergenic 45.0%
ATGGACTCTCGACCATGAAA+AGG + chr7_1:77222669-77222688 None:intergenic 45.0%
TATCTCCCTTTCTCGTGAGA+GGG - chr7_1:77222724-77222743 Msa1039880:three_prime_UTR 45.0%
AGAATCCCTCTCACGAGAAA+GGG + chr7_1:77222732-77222751 None:intergenic 45.0%
AAGAATCCCTCTCACGAGAA+AGG + chr7_1:77222733-77222752 None:intergenic 45.0%
GTTTCTTCCATTCCATGCCA+TGG - chr7_1:77222859-77222878 Msa1039880:three_prime_UTR 45.0%
! TTAGGGGAGTTTTCCTGATC+AGG - chr7_1:77223057-77223076 Msa1039880:CDS 45.0%
! AAAGTGGTTTCCCTAGCTCT+GGG - chr7_1:77223559-77223578 Msa1039880:intron 45.0%
TCCGTTCAGCTGAAAAATGC+AGG - chr7_1:77223638-77223657 Msa1039880:intron 45.0%
!! CCCTGCATTTTTCAGCTGAA+CGG + chr7_1:77223642-77223661 None:intergenic 45.0%
CCGTTCAGCTGAAAAATGCA+GGG - chr7_1:77223639-77223658 Msa1039880:intron 45.0%
GAAAAATGCAGGGAGCTTGT+TGG - chr7_1:77223649-77223668 Msa1039880:intron 45.0%
AGAACGCGTCATCCAAAAGT+GGG - chr7_1:77223674-77223693 Msa1039880:intron 45.0%
CAGCATCAACAAGAGCAGAT+TGG + chr7_1:77223828-77223847 None:intergenic 45.0%
! TCTTGTTGATGCTGCTTCAC+AGG - chr7_1:77223834-77223853 Msa1039880:intron 45.0%
! CTTGTTGATGCTGCTTCACA+GGG - chr7_1:77223835-77223854 Msa1039880:intron 45.0%
CTATGGTGGTACCTTTACAG+AGG - chr7_1:77223990-77224009 Msa1039880:intron 45.0%
TCTGAGGAATCCCTCTGTAA+AGG + chr7_1:77224004-77224023 None:intergenic 45.0%
TTTACAGAGGGATTCCTCAG+AGG - chr7_1:77224003-77224022 Msa1039880:intron 45.0%
AGAGGAACTGGTACGTTGTT+TGG - chr7_1:77224021-77224040 Msa1039880:intron 45.0%
CTTACGGTGTAGGTTTCATG+GGG - chr7_1:77224046-77224065 Msa1039880:intron 45.0%
TTACGGTGTAGGTTTCATGG+GGG - chr7_1:77224047-77224066 Msa1039880:intron 45.0%
GAGCAAAGGCTTGGAAGATT+TGG - chr7_1:77224069-77224088 Msa1039880:intron 45.0%
TGGAAGTAGAATAGGGCTCA+TGG - chr7_1:77224125-77224144 Msa1039880:intron 45.0%
AGGGCTCATGGTATATGATG+TGG - chr7_1:77224137-77224156 Msa1039880:intron 45.0%
GTGCATTTCGTGTTGCAGTA+TGG - chr7_1:77224168-77224187 Msa1039880:CDS 45.0%
CTCGACCATGAAAAGGGATT+TGG + chr7_1:77222662-77222681 None:intergenic 45.0%
TGGACTCTCGACCATGAAAA+GGG + chr7_1:77222668-77222687 None:intergenic 45.0%
ATGGACTCTCGACCATGAAA+AGG + chr7_1:77222669-77222688 None:intergenic 45.0%
TATCTCCCTTTCTCGTGAGA+GGG - chr7_1:77222724-77222743 Msa1039880:three_prime_UTR 45.0%
AGAATCCCTCTCACGAGAAA+GGG + chr7_1:77222732-77222751 None:intergenic 45.0%
AAGAATCCCTCTCACGAGAA+AGG + chr7_1:77222733-77222752 None:intergenic 45.0%
GTTTCTTCCATTCCATGCCA+TGG - chr7_1:77222859-77222878 Msa1039880:three_prime_UTR 45.0%
! TTAGGGGAGTTTTCCTGATC+AGG - chr7_1:77223057-77223076 Msa1039880:CDS 45.0%
! AAAGTGGTTTCCCTAGCTCT+GGG - chr7_1:77223559-77223578 Msa1039880:intron 45.0%
TCCGTTCAGCTGAAAAATGC+AGG - chr7_1:77223638-77223657 Msa1039880:intron 45.0%
!! CCCTGCATTTTTCAGCTGAA+CGG + chr7_1:77223642-77223661 None:intergenic 45.0%
CCGTTCAGCTGAAAAATGCA+GGG - chr7_1:77223639-77223658 Msa1039880:intron 45.0%
GAAAAATGCAGGGAGCTTGT+TGG - chr7_1:77223649-77223668 Msa1039880:intron 45.0%
AGAACGCGTCATCCAAAAGT+GGG - chr7_1:77223674-77223693 Msa1039880:intron 45.0%
CAGCATCAACAAGAGCAGAT+TGG + chr7_1:77223828-77223847 None:intergenic 45.0%
! TCTTGTTGATGCTGCTTCAC+AGG - chr7_1:77223834-77223853 Msa1039880:intron 45.0%
! CTTGTTGATGCTGCTTCACA+GGG - chr7_1:77223835-77223854 Msa1039880:intron 45.0%
CTATGGTGGTACCTTTACAG+AGG - chr7_1:77223990-77224009 Msa1039880:intron 45.0%
TCTGAGGAATCCCTCTGTAA+AGG + chr7_1:77224004-77224023 None:intergenic 45.0%
TTTACAGAGGGATTCCTCAG+AGG - chr7_1:77224003-77224022 Msa1039880:intron 45.0%
AGAGGAACTGGTACGTTGTT+TGG - chr7_1:77224021-77224040 Msa1039880:intron 45.0%
CTTACGGTGTAGGTTTCATG+GGG - chr7_1:77224046-77224065 Msa1039880:intron 45.0%
TTACGGTGTAGGTTTCATGG+GGG - chr7_1:77224047-77224066 Msa1039880:intron 45.0%
GAGCAAAGGCTTGGAAGATT+TGG - chr7_1:77224069-77224088 Msa1039880:intron 45.0%
TGGAAGTAGAATAGGGCTCA+TGG - chr7_1:77224125-77224144 Msa1039880:intron 45.0%
AGGGCTCATGGTATATGATG+TGG - chr7_1:77224137-77224156 Msa1039880:intron 45.0%
GTGCATTTCGTGTTGCAGTA+TGG - chr7_1:77224168-77224187 Msa1039880:CDS 45.0%
CTATCTCCCTTTCTCGTGAG+AGG - chr7_1:77222723-77222742 Msa1039880:three_prime_UTR 50.0%
CATCACGACACAGGTCTGTT+TGG + chr7_1:77223477-77223496 None:intergenic 50.0%
AACAGACCTGTGTCGTGATG+TGG - chr7_1:77223477-77223496 Msa1039880:intron 50.0%
CAAAGTGGTTTCCCTAGCTC+TGG - chr7_1:77223558-77223577 Msa1039880:intron 50.0%
GAGAACGCGTCATCCAAAAG+TGG - chr7_1:77223673-77223692 Msa1039880:intron 50.0%
!! AGATGATGGGACCTGTGATG+CGG + chr7_1:77223939-77223958 None:intergenic 50.0%
ACAGGTCCCATCATCTCTTC+CGG - chr7_1:77223943-77223962 Msa1039880:intron 50.0%
TCCCATCATCTCTTCCGGAT+GGG - chr7_1:77223948-77223967 Msa1039880:intron 50.0%
TCCCATCCGGAAGAGATGAT+GGG + chr7_1:77223952-77223971 None:intergenic 50.0%
ACAACGTACCAGTTCCTCTG+AGG + chr7_1:77224020-77224039 None:intergenic 50.0%
TAGGTTTCATGGGGGAGCAA+AGG - chr7_1:77224055-77224074 Msa1039880:intron 50.0%
CTATCTCCCTTTCTCGTGAG+AGG - chr7_1:77222723-77222742 Msa1039880:three_prime_UTR 50.0%
CATCACGACACAGGTCTGTT+TGG + chr7_1:77223477-77223496 None:intergenic 50.0%
AACAGACCTGTGTCGTGATG+TGG - chr7_1:77223477-77223496 Msa1039880:intron 50.0%
CAAAGTGGTTTCCCTAGCTC+TGG - chr7_1:77223558-77223577 Msa1039880:intron 50.0%
GAGAACGCGTCATCCAAAAG+TGG - chr7_1:77223673-77223692 Msa1039880:intron 50.0%
!! AGATGATGGGACCTGTGATG+CGG + chr7_1:77223939-77223958 None:intergenic 50.0%
ACAGGTCCCATCATCTCTTC+CGG - chr7_1:77223943-77223962 Msa1039880:intron 50.0%
TCCCATCATCTCTTCCGGAT+GGG - chr7_1:77223948-77223967 Msa1039880:intron 50.0%
TCCCATCCGGAAGAGATGAT+GGG + chr7_1:77223952-77223971 None:intergenic 50.0%
ACAACGTACCAGTTCCTCTG+AGG + chr7_1:77224020-77224039 None:intergenic 50.0%
TAGGTTTCATGGGGGAGCAA+AGG - chr7_1:77224055-77224074 Msa1039880:intron 50.0%
GCTCAGGAACGCTAGCATGT+GGG - chr7_1:77223728-77223747 Msa1039880:intron 55.0%
CTCAGGAACGCTAGCATGTG+GGG - chr7_1:77223729-77223748 Msa1039880:intron 55.0%
GGCGAAATTGGCTACCCGTA+AGG - chr7_1:77223909-77223928 Msa1039880:intron 55.0%
!! TGTGATGCGGTTGGCCTTAC+GGG + chr7_1:77223926-77223945 None:intergenic 55.0%
!! CTGTGATGCGGTTGGCCTTA+CGG + chr7_1:77223927-77223946 None:intergenic 55.0%
GTCCCATCATCTCTTCCGGA+TGG - chr7_1:77223947-77223966 Msa1039880:intron 55.0%
GTCCCATCCGGAAGAGATGA+TGG + chr7_1:77223953-77223972 None:intergenic 55.0%
GAGGGATTCCTCAGAGGAAC+TGG - chr7_1:77224009-77224028 Msa1039880:intron 55.0%
TTCATGGGGGAGCAAAGGCT+TGG - chr7_1:77224060-77224079 Msa1039880:intron 55.0%
GCTCAGGAACGCTAGCATGT+GGG - chr7_1:77223728-77223747 Msa1039880:intron 55.0%
CTCAGGAACGCTAGCATGTG+GGG - chr7_1:77223729-77223748 Msa1039880:intron 55.0%
GGCGAAATTGGCTACCCGTA+AGG - chr7_1:77223909-77223928 Msa1039880:intron 55.0%
!! TGTGATGCGGTTGGCCTTAC+GGG + chr7_1:77223926-77223945 None:intergenic 55.0%
!! CTGTGATGCGGTTGGCCTTA+CGG + chr7_1:77223927-77223946 None:intergenic 55.0%
GTCCCATCATCTCTTCCGGA+TGG - chr7_1:77223947-77223966 Msa1039880:intron 55.0%
GTCCCATCCGGAAGAGATGA+TGG + chr7_1:77223953-77223972 None:intergenic 55.0%
GAGGGATTCCTCAGAGGAAC+TGG - chr7_1:77224009-77224028 Msa1039880:intron 55.0%
TTCATGGGGGAGCAAAGGCT+TGG - chr7_1:77224060-77224079 Msa1039880:intron 55.0%
GGCTCAGGAACGCTAGCATG+TGG - chr7_1:77223727-77223746 Msa1039880:intron 60.0%
CGTAAGGCCAACCGCATCAC+AGG - chr7_1:77223925-77223944 Msa1039880:intron 60.0%
GATGGGACCTGTGATGCGGT+TGG + chr7_1:77223935-77223954 None:intergenic 60.0%
GGCTCAGGAACGCTAGCATG+TGG - chr7_1:77223727-77223746 Msa1039880:intron 60.0%
CGTAAGGCCAACCGCATCAC+AGG - chr7_1:77223925-77223944 Msa1039880:intron 60.0%
GATGGGACCTGTGATGCGGT+TGG + chr7_1:77223935-77223954 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 77222649 77224446 77222649 ID=Msa1039880;Name=Msa1039880
chr7_1 mRNA 77222649 77224446 77222649 ID=Msa1039880-mRNA-1;Parent=Msa1039880;Name=Msa1039880-mRNA-1;_AED=0.20;_eAED=0.20;_QI=229|1|1|1|1|1|2|234|211
chr7_1 exon 77222649 77223448 77222649 ID=Msa1039880-mRNA-1:exon:20288;Parent=Msa1039880-mRNA-1
chr7_1 exon 77224148 77224446 77224148 ID=Msa1039880-mRNA-1:exon:20287;Parent=Msa1039880-mRNA-1
chr7_1 five_prime_UTR 77224218 77224446 77224218 ID=Msa1039880-mRNA-1:five_prime_utr;Parent=Msa1039880-mRNA-1
chr7_1 CDS 77224148 77224217 77224148 ID=Msa1039880-mRNA-1:cds;Parent=Msa1039880-mRNA-1
chr7_1 CDS 77222883 77223448 77222883 ID=Msa1039880-mRNA-1:cds;Parent=Msa1039880-mRNA-1
chr7_1 three_prime_UTR 77222649 77222882 77222649 ID=Msa1039880-mRNA-1:three_prime_utr;Parent=Msa1039880-mRNA-1
Gene Sequence

>Msa1039880

ATGGATTTTCAGAAGAGGAGAGTTCGGTTTCTCCTATCTGTATCTGCCATCATTGTTCTTAGCATCACAGCTGAAAAATGCAGGGAGCTTGTTGGCGAGAACGCGTCATCCAAAAGTGGGAAGTTTACATTATTAAATTGCTTTGATATGGGCTCAGGAACGCTAGCATGTGGGGTTAAAGAAAGTGTGAAGCTCTATGTTAATAATATTAGATCTGCTCATGTTGAAAAAGCAAGACATGATGCAATCCAATCTGCTCTTGTTGATGCTGCTTCACAGGGTATGTCGCCAATTGCTTCAGAAAAACATGCCCTGAAACAAGGTAAAAAAGCGGCGAAATTGGCTACCCGTAAGGCCAACCGCATCACAGGTCCCATCATCTCTTCCGGATGGGACTTTTTTGAAGCTGTTTACTATGGTGGTACCTTTACAGAGGGATTCCTCAGAGGAACTGGTACGTTGTTTGGAACTTACGGTGTAGGTTTCATGGGGGAGCAAAGGCTTGGAAGATTTGGTTATCTTGTTGGAAGTCAATTGGGAAGTTGGATTGGAAGTAGAATAGGGCTCATGGTATATGATGTGGCTAATGGAGTGCATTTCGTGTTGCAGTATGGAAGTAAAATTCAAGAAACATAA

Protein sequence

>Msa1039880

MDFQKRRVRFLLSVSAIIVLSITAEKCRELVGENASSKSGKFTLLNCFDMGSGTLACGVKESVKLYVNNIRSAHVEKARHDAIQSALVDAASQGMSPIASEKHALKQGKKAAKLATRKANRITGPIISSGWDFFEAVYYGGTFTEGFLRGTGTLFGTYGVGFMGEQRLGRFGYLVGSQLGSWIGSRIGLMVYDVANGVHFVLQYGSKIQET*