AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0137040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137040 MtrunA17_Chr1g0209081 94.545 220 8 1 1 220 1 216 1.48e-142 396
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0137040 AT1G68185.1 47.085 223 107 6 1 220 1 215 3.14e-49 160
Msa0137040 AT1G68185.3 47.085 223 107 6 1 220 1 215 3.14e-49 160
Msa0137040 AT1G68185.2 47.085 223 107 6 1 220 47 261 2.40e-48 159

Find 69 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAGCTGAGATTGACATTT+TGG 0.125187 1_3:-69348198 Msa0137040:three_prime_UTR
AATAATTAATTATTATATTT+TGG 0.126010 1_3:+69347907 None:intergenic
ACCCTCATGTTATACAAATT+TGG 0.152649 1_3:+69347810 None:intergenic
GTATAACATGAGGGTTATTT+AGG 0.223417 1_3:-69347802 Msa0137040:three_prime_UTR
CCTCCTCATCAGTCTTCTTA+TGG 0.228908 1_3:+69350151 None:intergenic
GAATTCTTCTTTCTCTTCTT+AGG 0.234591 1_3:+69350383 None:intergenic
ACCATCGAGGCACACGATAT+TGG 0.263756 1_3:+69350547 None:intergenic
AAAGCAGATTCGGATGTTTA+TGG 0.264643 1_3:-69349465 Msa0137040:intron
ATGTGAAGTCAAGTTGATTT+AGG 0.273644 1_3:-69349047 Msa0137040:intron
GCAGCTGTTGGCCCTCTCTA+AGG 0.327070 1_3:-69347871 Msa0137040:three_prime_UTR
TATCATTATCTTCCATTTCA+AGG 0.332434 1_3:+69349082 None:intergenic
ATGATGTTGTGCATTATGTT+TGG 0.333046 1_3:-69347982 Msa0137040:three_prime_UTR
CAAAATCCAGACAGCGATAA+TGG 0.337536 1_3:-69350708 Msa0137040:exon
AAAATATGTACTGTACAATT+AGG 0.339197 1_3:+69348090 None:intergenic
TGCACAACATCATCAATAGA+AGG 0.365604 1_3:+69347992 None:intergenic
CCATCGAGGCACACGATATT+GGG 0.373094 1_3:+69350548 None:intergenic
AGTCTTCTTATGGGCCTTAC+CGG 0.377421 1_3:+69350161 None:intergenic
GTAGAAGTTCTTTCGGTGTA+TGG 0.379855 1_3:-69348040 Msa0137040:three_prime_UTR
CTCCTCATCAGTCTTCTTAT+GGG 0.387413 1_3:+69350152 None:intergenic
AAACAAGGGTTCAAGTTCTT+CGG 0.392297 1_3:+69350589 None:intergenic
AACCCCTGCCAGCCTTGAAA+TGG 0.394451 1_3:-69349094 Msa0137040:CDS
TGATGTTGTGCATTATGTTT+GGG 0.409527 1_3:-69347981 Msa0137040:three_prime_UTR
CAAATTGTGTTGTCATTTGA+CGG 0.420581 1_3:-69349138 Msa0137040:CDS
CCCAATATCGTGTGCCTCGA+TGG 0.441844 1_3:-69350548 Msa0137040:intron
ATTCAACTTTGAAGAATTTG+AGG 0.442827 1_3:-69350128 Msa0137040:intron
AGGGTTATTTAGGATACAAA+TGG 0.446647 1_3:-69347792 Msa0137040:three_prime_UTR
TTTGGGGTTTAGGTTGAGAA+TGG 0.451301 1_3:-69350261 Msa0137040:intron
CTGATGCAGATCTTCGATCA+TGG 0.453261 1_3:-69348218 Msa0137040:intron
TCTTCCATTTCAAGGCTGGC+AGG 0.456162 1_3:+69349090 None:intergenic
AGGATGAAACAAAGCAGATT+CGG 0.459454 1_3:-69349475 Msa0137040:CDS
TTCCATTTCAAGGCTGGCAG+GGG 0.465493 1_3:+69349092 None:intergenic
GCCTTACCGGTGACCCTTGG+TGG 0.466237 1_3:+69350174 None:intergenic
CCACAACAACTGCCGTGAAA+AGG 0.475289 1_3:+69347842 None:intergenic
TGGGCCTTACCGGTGACCCT+TGG 0.476360 1_3:+69350171 None:intergenic
ATTATCTTCCATTTCAAGGC+TGG 0.485099 1_3:+69349086 None:intergenic
GCCACCAAGGGTCACCGGTA+AGG 0.490738 1_3:-69350175 Msa0137040:CDS
CTTCCATTTCAAGGCTGGCA+GGG 0.494291 1_3:+69349091 None:intergenic
CAATTCATTGCAACCTTCCG+TGG 0.499026 1_3:-69349564 Msa0137040:CDS
TTATTTATGCTAGCAGCTGT+TGG 0.504433 1_3:-69347883 Msa0137040:three_prime_UTR
TTGGGGTTTAGGTTGAGAAT+GGG 0.505216 1_3:-69350260 Msa0137040:intron
GTTCTTTCGGTGTATGGCAT+AGG 0.505606 1_3:-69348034 Msa0137040:three_prime_UTR
AGAATCTTTGCTCGTTCAGA+AGG 0.520871 1_3:+69349515 None:intergenic
TCACCGCCATTATCGCTGTC+TGG 0.521152 1_3:+69350702 None:intergenic
TTTGTATAGATTGAAGAAGC+AGG 0.529052 1_3:-69349660 Msa0137040:intron
TCACTTACGTCGTCCACGGA+AGG 0.541348 1_3:+69349551 None:intergenic
AACCAAATTTGTATAACATG+AGG 0.548156 1_3:-69347812 Msa0137040:three_prime_UTR
CCGGTGACCCTTGGTGGCGA+AGG 0.548861 1_3:+69350180 None:intergenic
TGTAGGATGACCAGTTTGAA+AGG 0.550107 1_3:-69349203 Msa0137040:intron
ACCAAATTTGTATAACATGA+GGG 0.557726 1_3:-69347811 Msa0137040:three_prime_UTR
CCTTCGCCACCAAGGGTCAC+CGG 0.569098 1_3:-69350180 Msa0137040:CDS
TGAGAATGGGAAGAATACTA+AGG 0.569816 1_3:-69350247 Msa0137040:CDS
TTGGTTACCTTCGCCACCAA+GGG 0.579619 1_3:-69350187 Msa0137040:CDS
GCACAACATCATCAATAGAA+GGG 0.585781 1_3:+69347993 None:intergenic
AACGCGACTGTAATCAAACA+AGG 0.602179 1_3:+69350574 None:intergenic
AAAAGGTTACAGCCTTAGAG+AGG 0.611672 1_3:+69347859 None:intergenic
GAATGGGAAGAATACTAAGG+TGG 0.613980 1_3:-69350244 Msa0137040:CDS
TGGACCTCGAGGATGATGAT+TGG 0.623297 1_3:-69350206 Msa0137040:CDS
TCTCATCTCTGTTCAAGACA+AGG 0.626807 1_3:-69349495 Msa0137040:CDS
CCATAAGAAGACTGATGAGG+AGG 0.627181 1_3:-69350151 Msa0137040:CDS
ATTGGTTACCTTCGCCACCA+AGG 0.629138 1_3:-69350188 Msa0137040:CDS
AAAGGTTACAGCCTTAGAGA+GGG 0.685304 1_3:+69347860 None:intergenic
TAAGGTGGAAACAGTGAATG+TGG 0.687527 1_3:-69350229 Msa0137040:CDS
GGCCCATAAGAAGACTGATG+AGG 0.692280 1_3:-69350154 Msa0137040:CDS
AGTGAATGTGGTGGACCTCG+AGG 0.707436 1_3:-69350217 Msa0137040:CDS
GGTGGAAACAGTGAATGTGG+TGG 0.711849 1_3:-69350226 Msa0137040:CDS
AATCCAGACAGCGATAATGG+CGG 0.717060 1_3:-69350705 Msa0137040:intron
TTAAGGAGTGCTAACCATCG+AGG 0.734889 1_3:+69350534 None:intergenic
ACGCGACTGTAATCAAACAA+GGG 0.742183 1_3:+69350575 None:intergenic
GTAACCAATCATCATCCTCG+AGG 0.759157 1_3:+69350202 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATTAATTATTATATTT+TGG + chr1_3:69350700-69350719 None:intergenic 0.0%
!! TTAATTTCAATTTGAATAAT+CGG + chr1_3:69348101-69348120 None:intergenic 10.0%
!! AAACAAAAAATTTAACATTT+GGG + chr1_3:69348128-69348147 None:intergenic 10.0%
!! AAAACAAAAAATTTAACATT+TGG + chr1_3:69348129-69348148 None:intergenic 10.0%
!! TACTCAATTTCAAATAATTA+GGG - chr1_3:69347933-69347952 Msa0137040:three_prime_UTR 15.0%
!! AACAAAAAATTTAACATTTG+GGG + chr1_3:69348127-69348146 None:intergenic 15.0%
!!! TGTAAATTTTGATAATGTTT+TGG - chr1_3:69348325-69348344 Msa0137040:intron 15.0%
!!! GTAAATTTTGATAATGTTTT+GGG - chr1_3:69348326-69348345 Msa0137040:intron 15.0%
!!! TAAATTTTGATAATGTTTTG+GGG - chr1_3:69348327-69348346 Msa0137040:intron 15.0%
!! CTGATAAAGAAAATAAAAAA+AGG + chr1_3:69349298-69349317 None:intergenic 15.0%
!!! ATTTTAAAGTAAGAAAACTA+AGG - chr1_3:69349749-69349768 Msa0137040:intron 15.0%
!! AAATTGAAAATATTATCTTC+TGG + chr1_3:69349856-69349875 None:intergenic 15.0%
!!! ATTTTCAATTTTTTCAACAA+TGG - chr1_3:69349865-69349884 Msa0137040:intron 15.0%
!!! CGCTTTTTTTTTTTTTTTGA+AGG + chr1_3:69347823-69347842 None:intergenic 20.0%
!! GTACTCAATTTCAAATAATT+AGG - chr1_3:69347932-69347951 Msa0137040:three_prime_UTR 20.0%
!! ACAAAAAATTTAACATTTGG+GGG + chr1_3:69348126-69348145 None:intergenic 20.0%
!! CAAAACAAAAAACACAAATT+TGG + chr1_3:69348278-69348297 None:intergenic 20.0%
!! AATGGCAAAAAACAAAAATT+TGG + chr1_3:69348539-69348558 None:intergenic 20.0%
!! TTAAAATAACATGCTCATAA+AGG - chr1_3:69348719-69348738 Msa0137040:intron 20.0%
!! TAAAATAACATGCTCATAAA+GGG - chr1_3:69348720-69348739 Msa0137040:intron 20.0%
!!! TTGTATAAAAAAAGTGTGTT+GGG - chr1_3:69348768-69348787 Msa0137040:intron 20.0%
!! ATGAGTAGAATAACTTATAT+TGG + chr1_3:69348853-69348872 None:intergenic 20.0%
!! TAAAGAAAATAAAAAAAGGC+AGG + chr1_3:69349294-69349313 None:intergenic 20.0%
!!! ATTTTGTTTATAATAGTGAC+CGG + chr1_3:69350022-69350041 None:intergenic 20.0%
!!! GCTTTTTTATCAATTTTTAC+TGG - chr1_3:69350457-69350476 Msa0137040:intron 20.0%
!! AAAATATGTACTGTACAATT+AGG + chr1_3:69350517-69350536 None:intergenic 20.0%
!! AATTTTACAGCATAGAAAAG+AGG - chr1_3:69347775-69347794 Msa0137040:three_prime_UTR 25.0%
!! TGAAGATTTGAAATTGAAAG+AGG + chr1_3:69347961-69347980 None:intergenic 25.0%
! TTGAATAATCGGAATAGTTA+AGG + chr1_3:69348090-69348109 None:intergenic 25.0%
!!! TGTGTTTTTTGTTTTGTACA+AGG - chr1_3:69348282-69348301 Msa0137040:intron 25.0%
!! ATTCAACTTTGAAGAATTTG+AGG - chr1_3:69348476-69348495 Msa0137040:intron 25.0%
! TAAGTAAACAAACAATGCAA+TGG + chr1_3:69348557-69348576 None:intergenic 25.0%
!! CTTGTATAAAAAAAGTGTGT+TGG - chr1_3:69348767-69348786 Msa0137040:intron 25.0%
! TAACTAATTAAGCCTATTCT+TGG - chr1_3:69348815-69348834 Msa0137040:intron 25.0%
! ACATCTTATAAGAAACTGTA+TGG + chr1_3:69348918-69348937 None:intergenic 25.0%
! TGTTGATGTTCTTAATATTG+TGG - chr1_3:69349193-69349212 Msa0137040:CDS 25.0%
!!! TAGTTGTAGTTTGTTTGAAA+TGG - chr1_3:69349244-69349263 Msa0137040:intron 25.0%
!! AGTTTGTTTGAAATGGTATA+AGG - chr1_3:69349251-69349270 Msa0137040:intron 25.0%
!! GTTTGTTTGAAATGGTATAA+GGG - chr1_3:69349252-69349271 Msa0137040:intron 25.0%
!!! TTTTGATAATCCTTTCAAAC+TGG + chr1_3:69349414-69349433 None:intergenic 25.0%
! TATCATTATCTTCCATTTCA+AGG + chr1_3:69349525-69349544 None:intergenic 25.0%
! TTGAATACAAATTCATCATC+AGG + chr1_3:69349693-69349712 None:intergenic 25.0%
! TGAATTTGTATTCAAGTGTA+TGG - chr1_3:69349698-69349717 Msa0137040:intron 25.0%
! TGTGGTAAATATCATTTGTA+AGG - chr1_3:69349935-69349954 Msa0137040:intron 25.0%
!! ATTTTGCTTATAATAGTGAC+CGG - chr1_3:69350128-69350147 Msa0137040:intron 25.0%
!!! GTCTTCTATATTTTAAGAAC+TGG + chr1_3:69350495-69350514 None:intergenic 25.0%
!!! TTGTACAGTACATATTTTGA+CGG - chr1_3:69350519-69350538 Msa0137040:intron 25.0%
!!! TTTTTAGGTAGAAGTTCTTT+CGG - chr1_3:69350557-69350576 Msa0137040:CDS 25.0%
!! AACTCTATAGAATTTTGTCA+AGG - chr1_3:69350655-69350674 Msa0137040:intron 25.0%
! AACCAAATTTGTATAACATG+AGG - chr1_3:69350792-69350811 Msa0137040:five_prime_UTR 25.0%
! ACCAAATTTGTATAACATGA+GGG - chr1_3:69350793-69350812 Msa0137040:five_prime_UTR 25.0%
!! AAGCGAATTCAATTTTGAAG+CGG - chr1_3:69347838-69347857 Msa0137040:three_prime_UTR 30.0%
GAATTCTTCTTTCTCTTCTT+AGG + chr1_3:69348224-69348243 None:intergenic 30.0%
! TCAACATGTAGTGAGTATTT+TGG - chr1_3:69348250-69348269 Msa0137040:intron 30.0%
!! TTGTTTTGTACAAGGATGTT+TGG - chr1_3:69348290-69348309 Msa0137040:intron 30.0%
!!! TTGATAATGTTTTGGGGTTT+AGG - chr1_3:69348333-69348352 Msa0137040:intron 30.0%
TTTGTTTACTTAACACTCCT+AGG - chr1_3:69348565-69348584 Msa0137040:intron 30.0%
!! TGGTTTAACTTGTTAAACCT+AGG + chr1_3:69348585-69348604 None:intergenic 30.0%
!! TTTTCCGATTCGTTTGATTT+CGG + chr1_3:69348656-69348675 None:intergenic 30.0%
!!! GTAGCAATGTTTTAAAAACC+AGG + chr1_3:69348684-69348703 None:intergenic 30.0%
AATTAAGCCTATTCTTGGTT+TGG - chr1_3:69348820-69348839 Msa0137040:intron 30.0%
TAAAGTTCCAAACCAAGAAT+AGG + chr1_3:69348830-69348849 None:intergenic 30.0%
TTTGTATAGATTGAAGAAGC+AGG - chr1_3:69348944-69348963 Msa0137040:intron 30.0%
!! TATTTGTCACTTTATCTAGC+TGG - chr1_3:69349351-69349370 Msa0137040:intron 30.0%
ATCCTACAGAGAATTGAAAA+AGG + chr1_3:69349389-69349408 None:intergenic 30.0%
! CAAATTGTGTTGTCATTTGA+CGG - chr1_3:69349466-69349485 Msa0137040:CDS 30.0%
!! ATGTGAAGTCAAGTTGATTT+AGG - chr1_3:69349557-69349576 Msa0137040:CDS 30.0%
!! AGATCCACTTCTATTTCTAA+TGG + chr1_3:69349802-69349821 None:intergenic 30.0%
AATGATGAATGCTCATACTT+AGG - chr1_3:69349911-69349930 Msa0137040:intron 30.0%
ATGATGAATGCTCATACTTA+GGG - chr1_3:69349912-69349931 Msa0137040:intron 30.0%
GGTAAATATCATTTGTAAGG+AGG - chr1_3:69349938-69349957 Msa0137040:intron 30.0%
AAATTATTCATTACTCCCTC+CGG - chr1_3:69350000-69350019 Msa0137040:intron 30.0%
!! TAGGCATTGTTATGTGATTT+TGG - chr1_3:69350165-69350184 Msa0137040:CDS 30.0%
! CAATTGATTATGCTGTTTGT+TGG - chr1_3:69350298-69350317 Msa0137040:intron 30.0%
ATGATGTTGTGCATTATGTT+TGG - chr1_3:69350622-69350641 Msa0137040:intron 30.0%
TGATGTTGTGCATTATGTTT+GGG - chr1_3:69350623-69350642 Msa0137040:intron 30.0%
ACCCTCATGTTATACAAATT+TGG + chr1_3:69350797-69350816 None:intergenic 30.0%
GTATAACATGAGGGTTATTT+AGG - chr1_3:69350802-69350821 Msa0137040:five_prime_UTR 30.0%
! AGGGTTATTTAGGATACAAA+TGG - chr1_3:69350812-69350831 Msa0137040:five_prime_UTR 30.0%
!!! AGCGAATTCAATTTTGAAGC+GGG - chr1_3:69347839-69347858 Msa0137040:three_prime_UTR 35.0%
! AAACAAGGGTTCAAGTTCTT+CGG + chr1_3:69348018-69348037 None:intergenic 35.0%
TGAGAATGGGAAGAATACTA+AGG - chr1_3:69348357-69348376 Msa0137040:intron 35.0%
ACAATGTAGTCTGATTGAAC+TGG + chr1_3:69348631-69348650 None:intergenic 35.0%
GTAACCGAAATCAAACGAAT+CGG - chr1_3:69348649-69348668 Msa0137040:intron 35.0%
!!! TTTTGCTGATTCAGCAAAAG+CGG + chr1_3:69348976-69348995 None:intergenic 35.0%
AGGATGAAACAAAGCAGATT+CGG - chr1_3:69349129-69349148 Msa0137040:CDS 35.0%
AAAGCAGATTCGGATGTTTA+TGG - chr1_3:69349139-69349158 Msa0137040:CDS 35.0%
!!! GGTTGTTTTTATTAGTGCTC+TGG - chr1_3:69349214-69349233 Msa0137040:intron 35.0%
TATCAGAGCTGCATTTCTTT+AGG - chr1_3:69349312-69349331 Msa0137040:intron 35.0%
!!! CTCCTTTTTCAATTCTCTGT+AGG - chr1_3:69349384-69349403 Msa0137040:intron 35.0%
ATTATCTTCCATTTCAAGGC+TGG + chr1_3:69349521-69349540 None:intergenic 35.0%
ATTCAAGTGTATGGAAAGAG+AGG - chr1_3:69349707-69349726 Msa0137040:intron 35.0%
AGCACCATTAGAAATAGAAG+TGG - chr1_3:69349795-69349814 Msa0137040:intron 35.0%
ACATGTTTATTCTTAGCCTC+AGG - chr1_3:69349971-69349990 Msa0137040:intron 35.0%
TGAATAATTTCCTCTACCTG+AGG + chr1_3:69349990-69350009 None:intergenic 35.0%
TGTTTATAATAGTGACCGGA+GGG + chr1_3:69350018-69350037 None:intergenic 35.0%
TTGTTTATAATAGTGACCGG+AGG + chr1_3:69350019-69350038 None:intergenic 35.0%
! GCATTGTTATGTGATTTTGG+AGG - chr1_3:69350168-69350187 Msa0137040:CDS 35.0%
AGAACAATGCAACAATGCAA+AGG + chr1_3:69350204-69350223 None:intergenic 35.0%
! ACTAACATGTGCTGCAATTT+TGG - chr1_3:69350323-69350342 Msa0137040:intron 35.0%
!!! CATATTTTGACGGAATGTCT+TGG - chr1_3:69350529-69350548 Msa0137040:intron 35.0%
!! AATGTCTTGGAGCACTTTTT+AGG - chr1_3:69350542-69350561 Msa0137040:intron 35.0%
GCACAACATCATCAATAGAA+GGG + chr1_3:69350614-69350633 None:intergenic 35.0%
TGCACAACATCATCAATAGA+AGG + chr1_3:69350615-69350634 None:intergenic 35.0%
TTATTTATGCTAGCAGCTGT+TGG - chr1_3:69350721-69350740 Msa0137040:five_prime_UTR 35.0%
!!! CGCTGTCTGGATTTTGATTA+AGG + chr1_3:69347892-69347911 None:intergenic 40.0%
CAAAATCCAGACAGCGATAA+TGG - chr1_3:69347896-69347915 Msa0137040:three_prime_UTR 40.0%
! TGTGTGTTTTTCCCATTTGC+AGG - chr1_3:69347986-69348005 Msa0137040:three_prime_UTR 40.0%
TTCGGTTTCATCCTGCAAAT+GGG + chr1_3:69348000-69348019 None:intergenic 40.0%
ACGCGACTGTAATCAAACAA+GGG + chr1_3:69348032-69348051 None:intergenic 40.0%
AACGCGACTGTAATCAAACA+AGG + chr1_3:69348033-69348052 None:intergenic 40.0%
!! TTTGGGGTTTAGGTTGAGAA+TGG - chr1_3:69348343-69348362 Msa0137040:intron 40.0%
!! TTGGGGTTTAGGTTGAGAAT+GGG - chr1_3:69348344-69348363 Msa0137040:intron 40.0%
GAATGGGAAGAATACTAAGG+TGG - chr1_3:69348360-69348379 Msa0137040:intron 40.0%
TAAGGTGGAAACAGTGAATG+TGG - chr1_3:69348375-69348394 Msa0137040:intron 40.0%
CTCCTCATCAGTCTTCTTAT+GGG + chr1_3:69348455-69348474 None:intergenic 40.0%
GAGTTGAATCAGTTGAATCG+CGG + chr1_3:69348609-69348628 None:intergenic 40.0%
! TTTTTCACTTACGTCGTCCA+CGG + chr1_3:69349060-69349079 None:intergenic 40.0%
AGAATCTTTGCTCGTTCAGA+AGG + chr1_3:69349092-69349111 None:intergenic 40.0%
TCTCATCTCTGTTCAAGACA+AGG - chr1_3:69349109-69349128 Msa0137040:CDS 40.0%
GATTCGGATGTTTATGGTAC+TGG - chr1_3:69349145-69349164 Msa0137040:CDS 40.0%
TGTAGGATGACCAGTTTGAA+AGG - chr1_3:69349401-69349420 Msa0137040:intron 40.0%
TATGGAAAGAGAGGATGACA+GGG - chr1_3:69349716-69349735 Msa0137040:intron 40.0%
TAAGGACCTTTCTTTCTCTG+AGG - chr1_3:69349767-69349786 Msa0137040:intron 40.0%
TTACTGCCTCAGAGAAAGAA+AGG + chr1_3:69349776-69349795 None:intergenic 40.0%
TTATTCTTAGCCTCAGGTAG+AGG - chr1_3:69349977-69349996 Msa0137040:intron 40.0%
TTGCTTATAATAGTGACCGG+AGG - chr1_3:69350131-69350150 Msa0137040:CDS 40.0%
TGCTTATAATAGTGACCGGA+GGG - chr1_3:69350132-69350151 Msa0137040:CDS 40.0%
GTTGCATTGTTCTTTGCCAT+TGG - chr1_3:69350211-69350230 Msa0137040:CDS 40.0%
!! CAGTTCAGAAGTGTCATTTG+TGG - chr1_3:69350244-69350263 Msa0137040:CDS 40.0%
AAATGCTACTAGAGCAGAAG+AGG + chr1_3:69350270-69350289 None:intergenic 40.0%
ATCGAAGATCTGCATCAGAA+AGG + chr1_3:69350384-69350403 None:intergenic 40.0%
! TGGAGCTGAGATTGACATTT+TGG - chr1_3:69350406-69350425 Msa0137040:CDS 40.0%
! GGAGCTGAGATTGACATTTT+GGG - chr1_3:69350407-69350426 Msa0137040:CDS 40.0%
! GAGCTGAGATTGACATTTTG+GGG - chr1_3:69350408-69350427 Msa0137040:CDS 40.0%
!! ACATTTTGGGGACTCGTTTT+TGG - chr1_3:69350420-69350439 Msa0137040:intron 40.0%
! GTAGAAGTTCTTTCGGTGTA+TGG - chr1_3:69350564-69350583 Msa0137040:CDS 40.0%
AAAGGTTACAGCCTTAGAGA+GGG + chr1_3:69350747-69350766 None:intergenic 40.0%
AAAAGGTTACAGCCTTAGAG+AGG + chr1_3:69350748-69350767 None:intergenic 40.0%
! CTAAGGCTGTAACCTTTTCA+CGG - chr1_3:69350750-69350769 Msa0137040:five_prime_UTR 40.0%
! AATCCAGACAGCGATAATGG+CGG - chr1_3:69347899-69347918 Msa0137040:three_prime_UTR 45.0%
CTTCGGTTTCATCCTGCAAA+TGG + chr1_3:69348001-69348020 None:intergenic 45.0%
!! TTAAGGAGTGCTAACCATCG+AGG + chr1_3:69348073-69348092 None:intergenic 45.0%
GTAACCAATCATCATCCTCG+AGG + chr1_3:69348405-69348424 None:intergenic 45.0%
AGTCTTCTTATGGGCCTTAC+CGG + chr1_3:69348446-69348465 None:intergenic 45.0%
CCTCCTCATCAGTCTTCTTA+TGG + chr1_3:69348456-69348475 None:intergenic 45.0%
CCATAAGAAGACTGATGAGG+AGG - chr1_3:69348453-69348472 Msa0137040:intron 45.0%
TGAATCAGTTGAATCGCGGT+TGG + chr1_3:69348605-69348624 None:intergenic 45.0%
ACGAATCGGAAAACTGAACC+TGG - chr1_3:69348663-69348682 Msa0137040:intron 45.0%
CAATTCATTGCAACCTTCCG+TGG - chr1_3:69349040-69349059 Msa0137040:intron 45.0%
GTATGGAAAGAGAGGATGAC+AGG - chr1_3:69349715-69349734 Msa0137040:intron 45.0%
AACAATGGTGAAGTGCAACG+AGG - chr1_3:69349880-69349899 Msa0137040:intron 45.0%
GAATGCTCATACTTAGGGTG+TGG - chr1_3:69349917-69349936 Msa0137040:intron 45.0%
!! ACCGGAGGGAGTATTTGATT+AGG - chr1_3:69350146-69350165 Msa0137040:CDS 45.0%
GCCTAATCAAATACTCCCTC+CGG + chr1_3:69350150-69350169 None:intergenic 45.0%
GAACTGTAGAGACAAGCCAA+TGG + chr1_3:69350230-69350249 None:intergenic 45.0%
CTGATGCAGATCTTCGATCA+TGG - chr1_3:69350386-69350405 Msa0137040:CDS 45.0%
! GTTCTTTCGGTGTATGGCAT+AGG - chr1_3:69350570-69350589 Msa0137040:CDS 45.0%
!!! TATTTTAGAATAAAAATAAA+AGG + chr1_3:69348152-69348171 None:intergenic 5.0%
CCATCGAGGCACACGATATT+GGG + chr1_3:69348059-69348078 None:intergenic 50.0%
ACCATCGAGGCACACGATAT+TGG + chr1_3:69348060-69348079 None:intergenic 50.0%
GGTGGAAACAGTGAATGTGG+TGG - chr1_3:69348378-69348397 Msa0137040:intron 50.0%
TGGACCTCGAGGATGATGAT+TGG - chr1_3:69348398-69348417 Msa0137040:intron 50.0%
ATTGGTTACCTTCGCCACCA+AGG - chr1_3:69348416-69348435 Msa0137040:intron 50.0%
TTGGTTACCTTCGCCACCAA+GGG - chr1_3:69348417-69348436 Msa0137040:intron 50.0%
GGCCCATAAGAAGACTGATG+AGG - chr1_3:69348450-69348469 Msa0137040:intron 50.0%
AGGCAGGCAGATCAGAAACA+TGG + chr1_3:69349278-69349297 None:intergenic 50.0%
TTCCATTTCAAGGCTGGCAG+GGG + chr1_3:69349515-69349534 None:intergenic 50.0%
CTTCCATTTCAAGGCTGGCA+GGG + chr1_3:69349516-69349535 None:intergenic 50.0%
TCTTCCATTTCAAGGCTGGC+AGG + chr1_3:69349517-69349536 None:intergenic 50.0%
GAAAGAGAGGATGACAGGGT+GGG - chr1_3:69349720-69349739 Msa0137040:intron 50.0%
AAAGAGAGGATGACAGGGTG+GGG - chr1_3:69349721-69349740 Msa0137040:intron 50.0%
CCACAACAACTGCCGTGAAA+AGG + chr1_3:69350765-69350784 None:intergenic 50.0%
! CCTTTTCACGGCAGTTGTTG+TGG - chr1_3:69350762-69350781 Msa0137040:five_prime_UTR 50.0%
TCACCGCCATTATCGCTGTC+TGG + chr1_3:69347905-69347924 None:intergenic 55.0%
CCCAATATCGTGTGCCTCGA+TGG - chr1_3:69348056-69348075 Msa0137040:three_prime_UTR 55.0%
!! AGTGAATGTGGTGGACCTCG+AGG - chr1_3:69348387-69348406 Msa0137040:intron 55.0%
TCACTTACGTCGTCCACGGA+AGG + chr1_3:69349056-69349075 None:intergenic 55.0%
AACCCCTGCCAGCCTTGAAA+TGG - chr1_3:69349510-69349529 Msa0137040:CDS 55.0%
GGAAAGAGAGGATGACAGGG+TGG - chr1_3:69349719-69349738 Msa0137040:intron 55.0%
AAGAGAGGATGACAGGGTGG+GGG - chr1_3:69349722-69349741 Msa0137040:intron 55.0%
GCAGCTGTTGGCCCTCTCTA+AGG - chr1_3:69350733-69350752 Msa0137040:five_prime_UTR 60.0%
CCTTCGCCACCAAGGGTCAC+CGG - chr1_3:69348424-69348443 Msa0137040:intron 65.0%
GCCACCAAGGGTCACCGGTA+AGG - chr1_3:69348429-69348448 Msa0137040:intron 65.0%
GCCTTACCGGTGACCCTTGG+TGG + chr1_3:69348433-69348452 None:intergenic 65.0%
TGGGCCTTACCGGTGACCCT+TGG + chr1_3:69348436-69348455 None:intergenic 65.0%
AGAGGATGACAGGGTGGGGG+TGG - chr1_3:69349725-69349744 Msa0137040:intron 65.0%
!! CCGGTGACCCTTGGTGGCGA+AGG + chr1_3:69348427-69348446 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 69347771 69350855 69347771 ID=Msa0137040;Name=Msa0137040
chr1_3 mRNA 69347771 69350855 69347771 ID=Msa0137040-mRNA-1;Parent=Msa0137040;Name=Msa0137040-mRNA-1;_AED=0.05;_eAED=0.05;_QI=144|1|1|1|0.83|0.71|7|466|220
chr1_3 exon 69347771 69348231 69347771 ID=Msa0137040-mRNA-1:exon:23960;Parent=Msa0137040-mRNA-1
chr1_3 exon 69349048 69349220 69349048 ID=Msa0137040-mRNA-1:exon:23959;Parent=Msa0137040-mRNA-1
chr1_3 exon 69349466 69349673 69349466 ID=Msa0137040-mRNA-1:exon:23958;Parent=Msa0137040-mRNA-1
chr1_3 exon 69350129 69350271 69350129 ID=Msa0137040-mRNA-1:exon:23957;Parent=Msa0137040-mRNA-1
chr1_3 exon 69350367 69350434 69350367 ID=Msa0137040-mRNA-1:exon:23956;Parent=Msa0137040-mRNA-1
chr1_3 exon 69350549 69350618 69350549 ID=Msa0137040-mRNA-1:exon:23955;Parent=Msa0137040-mRNA-1
chr1_3 exon 69350706 69350855 69350706 ID=Msa0137040-mRNA-1:exon:23954;Parent=Msa0137040-mRNA-1
chr1_3 five_prime_UTR 69350712 69350855 69350712 ID=Msa0137040-mRNA-1:five_prime_utr;Parent=Msa0137040-mRNA-1
chr1_3 CDS 69350706 69350711 69350706 ID=Msa0137040-mRNA-1:cds;Parent=Msa0137040-mRNA-1
chr1_3 CDS 69350549 69350618 69350549 ID=Msa0137040-mRNA-1:cds;Parent=Msa0137040-mRNA-1
chr1_3 CDS 69350367 69350434 69350367 ID=Msa0137040-mRNA-1:cds;Parent=Msa0137040-mRNA-1
chr1_3 CDS 69350129 69350271 69350129 ID=Msa0137040-mRNA-1:cds;Parent=Msa0137040-mRNA-1
chr1_3 CDS 69349466 69349673 69349466 ID=Msa0137040-mRNA-1:cds;Parent=Msa0137040-mRNA-1
chr1_3 CDS 69349053 69349220 69349053 ID=Msa0137040-mRNA-1:cds;Parent=Msa0137040-mRNA-1
chr1_3 three_prime_UTR 69349048 69349052 69349048 ID=Msa0137040-mRNA-1:three_prime_utr;Parent=Msa0137040-mRNA-1
chr1_3 three_prime_UTR 69347771 69348231 69347771 ID=Msa0137040-mRNA-1:three_prime_utr;Parent=Msa0137040-mRNA-1
Gene Sequence

>Msa0137040

ATGGCGGATGAAACCGAAGAACTTGAACCCTTGTTTGATTACAGTCGCGTTCAACCCAATATCGTGTGCCTCGATGATGATGAAGACGATGATGTTGTTGCTGTTCCTAAGAAGAGAAAGAAGAATTCTAAGTCTCAACATGTAGTTGAGAATGGGAAGAATACTAAGGTGGAAACAGTGAATGTGGTGGACCTCGAGGATGATGATTGGTTACCTTCGCCACCAAGGGTCACCGGTAAGGCCCATAAGAAGACTGATGAGGAGGATTCAACTTTGAAGAATTTGAGATTGAAGAAGCAGGAGCTTGCCGCTTTTGCTGAATCAGCAAAAAAATTGTTGAAAACTGTTGAGAATTCTGTAGAAATTGAAAATTTCAATTCATTGCAACCTTCCGTGGACGACGTAAGTGAAAAAGCGTCAAAACCTTCTGAACGAGCAAAGATTCTCATCTCTGTTCAAGACAAGGATGAAACAAAGCAGATTCGGATGTTTATGGATGACCAGTTTGAAAGGATTATCAAAACATATGCTGAGAAAATGAAGTGTGATCTGAAACAAATTGTGTTGTCATTTGACGGTGATAAAATAAGTTCATCTCAAACCCCTGCCAGCCTTGAAATGGAAGATAATGATATTATTGAAGTTCATGTGAAGTCAAGTTGA

Protein sequence

>Msa0137040

MADETEELEPLFDYSRVQPNIVCLDDDEDDDVVAVPKKRKKNSKSQHVVENGKNTKVETVNVVDLEDDDWLPSPPRVTGKAHKKTDEEDSTLKNLRLKKQELAAFAESAKKLLKTVENSVEIENFNSLQPSVDDVSEKASKPSERAKILISVQDKDETKQIRMFMDDQFERIIKTYAEKMKCDLKQIVLSFDGDKISSSQTPASLEMEDNDIIEVHVKSS*