AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0347360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0347360 MtrunA17_Chr3g0079511 71.429 105 23 1 57 154 1 105 1.10e-48 155
Msa0347360 MtrunA17_Chr3g0079501 75.410 61 15 0 1 61 1 61 6.66e-28 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0347360 AT2G30695.2 43.689 103 46 3 74 165 59 160 1.19e-17 77.0
Msa0347360 AT2G30695.3 43.689 103 46 3 74 165 59 160 1.19e-17 77.0
Msa0347360 AT2G30695.1 43.689 103 46 3 74 165 59 160 1.19e-17 77.0
Msa0347360 AT2G30695.4 55.556 63 27 1 74 136 59 120 1.84e-15 69.7

Find 73 sgRNAs with CRISPR-Local

Find 267 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGACTTGCTGGTGATTT+TGG 0.160107 3_1:-8361488 None:intergenic
TGATGATGTGTTTCAGAAAA+TGG 0.234117 3_1:+8361185 Msa0347360:CDS
TAACAGTTATGTTATCTTAT+AGG 0.257120 3_1:+8358843 Msa0347360:five_prime_UTR
CCTACTGCTTCTGTATTATC+AGG 0.267170 3_1:+8360051 Msa0347360:CDS
GGCGAAACACAAATGTTCTT+TGG 0.281477 3_1:-8363652 None:intergenic
ACCTCTAATAAAATGTCTTT+TGG 0.282309 3_1:-8362024 None:intergenic
CTGTGGTGTTCACCATTATT+AGG 0.284839 3_1:-8363278 None:intergenic
AACAGTTATGTTATCTTATA+GGG 0.287320 3_1:+8358844 Msa0347360:five_prime_UTR
CCAGGATTTCGTAGAGTAAA+AGG 0.298327 3_1:+8361228 Msa0347360:CDS
TCTCTTAAAATGATTCAAAA+TGG 0.316481 3_1:+8363142 Msa0347360:three_prime_UTR
ATGATTATTATCAGACTTGC+TGG 0.318683 3_1:-8361497 None:intergenic
ACATTGTTTCCTCCTAATAA+TGG 0.328973 3_1:+8363266 Msa0347360:three_prime_UTR
ATGGAGTGACATTGCTTCTT+CGG 0.375429 3_1:+8363105 Msa0347360:three_prime_UTR
TTTATATGTTAAAATCTTAC+CGG 0.375682 3_1:+8363082 Msa0347360:three_prime_UTR
AAACTTCAGCACGTAATATC+TGG 0.386972 3_1:-8361430 None:intergenic
AAAACGGGTAGAAGAAATTT+CGG 0.398596 3_1:-8360179 None:intergenic
CTACAAAATGAATTTAACTT+TGG 0.404253 3_1:+8363465 Msa0347360:three_prime_UTR
CAGGTAAGCATCGAGGTATC+TGG 0.412623 3_1:+8361141 Msa0347360:intron
ATATGCATATGCTGAAAATC+AGG 0.428883 3_1:-8363349 None:intergenic
TTGCTTAAATCAAGTATTTG+AGG 0.441700 3_1:+8358907 Msa0347360:five_prime_UTR
TAGATATTATGAAAGGTACT+TGG 0.454363 3_1:+8361386 Msa0347360:three_prime_UTR
TTCGAAAGAAAACCGTTTCG+AGG 0.459116 3_1:-8361547 None:intergenic
TCTGTCTTTCTTTGAAGCAT+AGG 0.468922 3_1:+8359202 Msa0347360:CDS
GACAGAGAACTCCTCAAAAC+GGG 0.474763 3_1:-8360194 None:intergenic
AGATCTTGAAACTACATTTG+AGG 0.477759 3_1:+8363000 Msa0347360:three_prime_UTR
GAACATTTGTGTTTCGCCAT+AGG 0.484731 3_1:+8363657 Msa0347360:three_prime_UTR
AGATATTATGAAAGGTACTT+GGG 0.487052 3_1:+8361387 Msa0347360:three_prime_UTR
CTCAACTGTGGCTGAGTATG+TGG 0.495219 3_1:+8362095 Msa0347360:three_prime_UTR
AGAAGCAATGTCACTCCATC+CGG 0.498714 3_1:-8363101 None:intergenic
AATACTATCTGAACCCACTC+TGG 0.504198 3_1:-8363570 None:intergenic
CTCAGGATTCCATCGATGCA+TGG 0.508752 3_1:+8363386 Msa0347360:three_prime_UTR
CTCTAACACTCACTCTCCTA+TGG 0.508779 3_1:-8363673 None:intergenic
AAACAATTTCATTCCAGAGT+GGG 0.513227 3_1:+8363557 Msa0347360:three_prime_UTR
AGACAGAGAACTCCTCAAAA+CGG 0.513489 3_1:-8360195 None:intergenic
GGACATCACTCTACAAACTC+TGG 0.519633 3_1:+8363418 Msa0347360:three_prime_UTR
AAGGAGGTGAAGTATTTATG+TGG 0.522765 3_1:+8361247 Msa0347360:CDS
AAAACCACGGTGGCATTTCG+TGG 0.524406 3_1:+8363205 Msa0347360:three_prime_UTR
CATCTTAAATCTAACTCCAC+AGG 0.526554 3_1:+8359021 Msa0347360:CDS
GCTTCAAGAGTAGAATTGAC+AGG 0.526569 3_1:+8363057 Msa0347360:three_prime_UTR
CGATGATGTTAGAGAACTAA+AGG 0.528783 3_1:+8360231 Msa0347360:CDS
TATGTTAAAATCTTACCGGA+TGG 0.533410 3_1:+8363086 Msa0347360:three_prime_UTR
ATCGATGCATGGGAAAACTT+AGG 0.534930 3_1:+8363397 Msa0347360:three_prime_UTR
TCAGGATTCCATCGATGCAT+GGG 0.540440 3_1:+8363387 Msa0347360:three_prime_UTR
ACTCTACGAAATCCTGGGAT+CGG 0.550289 3_1:-8361222 None:intergenic
CTTGAAACTACATTTGAGGA+AGG 0.550589 3_1:+8363004 Msa0347360:three_prime_UTR
AATATCTGGTTAGTCAAACT+TGG 0.550831 3_1:-8361416 None:intergenic
CTTTCTTTGAAGCATAGGCA+TGG 0.551400 3_1:+8359207 Msa0347360:CDS
CTTTAGTTCTCTAACATCAT+CGG 0.553978 3_1:-8360230 None:intergenic
GTGGTTATTATCACAGATAG+AGG 0.554904 3_1:+8358931 Msa0347360:five_prime_UTR
TAAATCAAGTATTTGAGGTG+TGG 0.555416 3_1:+8358912 Msa0347360:five_prime_UTR
TGTCAACTGACTCCTCGAAA+CGG 0.576450 3_1:+8361535 Msa0347360:three_prime_UTR
TGCTTCTTCGGTCTGAACCA+AGG 0.577590 3_1:+8363117 Msa0347360:three_prime_UTR
AAAGCTGCACAACCGATCCC+AGG 0.580477 3_1:+8361210 Msa0347360:CDS
ATCTCTTGAAAGCAATGTAG+TGG 0.582364 3_1:+8363496 Msa0347360:three_prime_UTR
CACACCACAGTATTTCAATG+AGG 0.583161 3_1:-8358958 None:intergenic
CAGATTGATAACCTTAGCAA+AGG 0.588391 3_1:+8361296 Msa0347360:CDS
GTAGTTCTCAAAATCATCTG+CGG 0.599030 3_1:-8363446 None:intergenic
TGGTGTTCACCATTATTAGG+AGG 0.607833 3_1:-8363275 None:intergenic
CTTTCCTCATTGAAATACTG+TGG 0.620205 3_1:+8358954 Msa0347360:five_prime_UTR
CCTGATAATACAGAAGCAGT+AGG 0.622116 3_1:-8360051 None:intergenic
AAAACAATTTCATTCCAGAG+TGG 0.624700 3_1:+8363556 Msa0347360:three_prime_UTR
TGTGGCTGAGTATGTGGAGA+AGG 0.628591 3_1:+8362101 Msa0347360:three_prime_UTR
ACGTTAGTAGATATTATGAA+AGG 0.633505 3_1:+8361379 Msa0347360:three_prime_UTR
GGAAATAATCAACTCAACTG+TGG 0.634122 3_1:+8362083 Msa0347360:three_prime_UTR
GATATTATGAAAGGTACTTG+GGG 0.636328 3_1:+8361388 Msa0347360:three_prime_UTR
GCTTGCAGATGATAAAACAC+AGG 0.649255 3_1:+8359133 Msa0347360:intron
AGTTATGTTATCTTATAGGG+TGG 0.649909 3_1:+8358847 Msa0347360:five_prime_UTR
TTCTGTCCAGGTAAGCATCG+AGG 0.685471 3_1:+8361134 Msa0347360:intron
GGATTTCGTAGAGTAAAAGG+AGG 0.718882 3_1:+8361231 Msa0347360:CDS
ATAACCACGAAATGCCACCG+TGG 0.761985 3_1:-8363209 None:intergenic
TGTCATCTAAGTGAAAACCA+CGG 0.770313 3_1:+8363192 Msa0347360:three_prime_UTR
CATCTAAGTGAAAACCACGG+TGG 0.816103 3_1:+8363195 Msa0347360:three_prime_UTR
TATCTGGAAACAGAACACAG+AGG 0.877907 3_1:+8361157 Msa0347360:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTATTTTTTTAATTAT+AGG + chr3_1:8362640-8362659 Msa0347360:intron 0.0%
!!! TTATTTTGTGTAAATTTTTT+CGG + chr3_1:8359878-8359897 Msa0347360:intron 10.0%
!!! TATTATTATCATTTTCTATT+TGG - chr3_1:8361465-8361484 None:intergenic 10.0%
!! AACTATAAATACATAAAAAT+AGG - chr3_1:8361719-8361738 None:intergenic 10.0%
!!! GTATTTTTTATTTTTTTCAT+TGG + chr3_1:8362679-8362698 Msa0347360:intron 10.0%
!!! AATTTTTCAATACTAACTTA+CGG - chr3_1:8359842-8359861 None:intergenic 15.0%
!! TAACATGTAAATTATAATCT+AGG - chr3_1:8360131-8360150 None:intergenic 15.0%
!!! TATTTATGTGGATTTTAAAT+TGG + chr3_1:8361259-8361278 Msa0347360:CDS 15.0%
!!! AGAAGATTAATTCATTTTTA+TGG + chr3_1:8361974-8361993 Msa0347360:intron 15.0%
!! ACAATGAAAATTTAATTGAA+TGG - chr3_1:8362604-8362623 None:intergenic 15.0%
!! TTTATATGTTAAAATCTTAC+CGG + chr3_1:8363082-8363101 Msa0347360:three_prime_UTR 15.0%
!! TAACAGTTATGTTATCTTAT+AGG + chr3_1:8358843-8358862 Msa0347360:five_prime_UTR 20.0%
!! AACAGTTATGTTATCTTATA+GGG + chr3_1:8358844-8358863 Msa0347360:five_prime_UTR 20.0%
!! GGAAGAAAAAAACAATAAAA+AGG - chr3_1:8359066-8359085 None:intergenic 20.0%
!! TTTGGATAAACAACTTAATT+AGG + chr3_1:8359374-8359393 Msa0347360:intron 20.0%
!!! GAGGGTTTTTTAATTAAAAT+AGG + chr3_1:8359634-8359653 Msa0347360:intron 20.0%
!! TAATTTCAACTTAAATGAGA+AGG + chr3_1:8359764-8359783 Msa0347360:intron 20.0%
!!! ATTTTTCAATACTAACTTAC+GGG - chr3_1:8359841-8359860 None:intergenic 20.0%
!!! AAATCCGTTTCTTTTTTTAT+AGG + chr3_1:8360010-8360029 Msa0347360:intron 20.0%
!!! AATCCGTTTCTTTTTTTATA+GGG + chr3_1:8360011-8360030 Msa0347360:intron 20.0%
!! TTTGAAAATGAGTTATAAGT+GGG + chr3_1:8360430-8360449 Msa0347360:intron 20.0%
!! TCTGAAAATGAGTTTATAAA+TGG + chr3_1:8360623-8360642 Msa0347360:intron 20.0%
!! CTGAAAATGAGTTTATAAAT+GGG + chr3_1:8360624-8360643 Msa0347360:intron 20.0%
!! AAAGAAAGAAAACTTACATT+TGG - chr3_1:8361668-8361687 None:intergenic 20.0%
!!! AAGAAAATCATGTTTTAACA+TGG - chr3_1:8361846-8361865 None:intergenic 20.0%
!!! ATGATTTTCTTGAATTGTAA+GGG + chr3_1:8361855-8361874 Msa0347360:intron 20.0%
!! GATAACTTGATTAAAAACAT+TGG - chr3_1:8362061-8362080 None:intergenic 20.0%
!!! TGTTTTTAATCAAGTTATCA+AGG + chr3_1:8362062-8362081 Msa0347360:three_prime_UTR 20.0%
!! GAAATACTATAATTAGCAAA+TGG - chr3_1:8362134-8362153 None:intergenic 20.0%
!! TCTCTTAAAATGATTCAAAA+TGG + chr3_1:8363142-8363161 Msa0347360:three_prime_UTR 20.0%
!!! CTACAAAATGAATTTAACTT+TGG + chr3_1:8363465-8363484 Msa0347360:three_prime_UTR 20.0%
! TTGCTTAAATCAAGTATTTG+AGG + chr3_1:8358907-8358926 Msa0347360:five_prime_UTR 25.0%
! AAACAATAAAAAGGAGAAAG+AGG - chr3_1:8359057-8359076 None:intergenic 25.0%
!!! CTTATTTCTATAAGTTCTGT+AGG - chr3_1:8359471-8359490 None:intergenic 25.0%
!! ATAGTTTTCCACTTATGAAA+AGG + chr3_1:8359660-8359679 Msa0347360:intron 25.0%
!! TATAAAGACCTTTTCATAAG+TGG - chr3_1:8359671-8359690 None:intergenic 25.0%
! CTTATGAAAAGGTCTTTATA+AGG + chr3_1:8359671-8359690 Msa0347360:intron 25.0%
! TATAAGGTTATAGATGTTCA+TGG + chr3_1:8359687-8359706 Msa0347360:intron 25.0%
! CACAAAATAATGAGTCAATT+TGG - chr3_1:8359868-8359887 None:intergenic 25.0%
! GTTCCCTATAAAAAAAGAAA+CGG - chr3_1:8360017-8360036 None:intergenic 25.0%
! AGGATTGAAATAACTTATGA+AGG - chr3_1:8360111-8360130 None:intergenic 25.0%
! GTTTGAAAATGAGTTATAAG+TGG + chr3_1:8360429-8360448 Msa0347360:intron 25.0%
! ACAAAACCATATTACAAAGT+GGG - chr3_1:8360464-8360483 None:intergenic 25.0%
! TACAAAACCATATTACAAAG+TGG - chr3_1:8360465-8360484 None:intergenic 25.0%
!!! ACTTTGTAATATGGTTTTGT+AGG + chr3_1:8360464-8360483 Msa0347360:intron 25.0%
! TAACTTACTAAATAGACTTG+TGG - chr3_1:8360662-8360681 None:intergenic 25.0%
!! TACTTCTTGGAATTTAGTTT+GGG - chr3_1:8360687-8360706 None:intergenic 25.0%
!!! TTACATATTCCATTTGGTTT+TGG - chr3_1:8360764-8360783 None:intergenic 25.0%
! TTCAACTTACATATTCCATT+TGG - chr3_1:8360770-8360789 None:intergenic 25.0%
! ACGTTAGTAGATATTATGAA+AGG + chr3_1:8361379-8361398 Msa0347360:three_prime_UTR 25.0%
!!! TAGATATTATGAAAGGTACT+TGG + chr3_1:8361386-8361405 Msa0347360:three_prime_UTR 25.0%
!!! AGATATTATGAAAGGTACTT+GGG + chr3_1:8361387-8361406 Msa0347360:three_prime_UTR 25.0%
! ATATTGCTGCTAAAAAATTG+AGG + chr3_1:8361626-8361645 Msa0347360:three_prime_UTR 25.0%
!! TTAATGTCTCTTTAAGAGTT+TGG + chr3_1:8361804-8361823 Msa0347360:intron 25.0%
!! CATGATTTTCTTGAATTGTA+AGG + chr3_1:8361854-8361873 Msa0347360:intron 25.0%
!! TGATTTTCTTGAATTGTAAG+GGG + chr3_1:8361856-8361875 Msa0347360:intron 25.0%
!! AAGACACAGTTTAGTTTAAT+AGG + chr3_1:8361920-8361939 Msa0347360:intron 25.0%
!! ACCAAAAGACATTTTATTAG+AGG + chr3_1:8362023-8362042 Msa0347360:three_prime_UTR 25.0%
!! ACCTCTAATAAAATGTCTTT+TGG - chr3_1:8362027-8362046 None:intergenic 25.0%
! ACTTGATTAAAAACATTGGA+AGG - chr3_1:8362057-8362076 None:intergenic 25.0%
! AACATTGCTATGTAATTTCA+TGG - chr3_1:8362172-8362191 None:intergenic 25.0%
!! AAGGAAAAACTGATAGATTT+TGG - chr3_1:8362396-8362415 None:intergenic 25.0%
! GAACATAAAAGATCATAAGA+AGG - chr3_1:8362415-8362434 None:intergenic 25.0%
!! TATGTATTTGAAACCCTATT+CGG - chr3_1:8362502-8362521 None:intergenic 25.0%
! AAATTGTCACATACCATTAT+TGG + chr3_1:8362526-8362545 Msa0347360:intron 25.0%
! AGAAGGATATAAACCAATAA+TGG - chr3_1:8362542-8362561 None:intergenic 25.0%
!!! ATTATTGGTTTATATCCTTC+TGG + chr3_1:8362541-8362560 Msa0347360:intron 25.0%
!!! TTTTTAGTACAGTTAGTGTT+TGG + chr3_1:8362566-8362585 Msa0347360:intron 25.0%
!! AAACCACTATTTTCTACAAT+CGG + chr3_1:8362842-8362861 Msa0347360:intron 25.0%
!!! CTTTGCTTGTTATGTTAAAA+TGG + chr3_1:8362905-8362924 Msa0347360:intron 25.0%
!!! TATGTTAAAATGGATTTTGC+TGG + chr3_1:8362915-8362934 Msa0347360:intron 25.0%
!!! ATGTTAAAATGGATTTTGCT+GGG + chr3_1:8362916-8362935 Msa0347360:intron 25.0%
!!! AATCATTTTAAGAGATTCCT+TGG - chr3_1:8363137-8363156 None:intergenic 25.0%
!! TTCAGCATATGCATATTTTA+AGG + chr3_1:8363356-8363375 Msa0347360:three_prime_UTR 25.0%
!! AATGTAGTGGTATTTTCTTT+TGG + chr3_1:8363509-8363528 Msa0347360:three_prime_UTR 25.0%
AGTTATGTTATCTTATAGGG+TGG + chr3_1:8358847-8358866 Msa0347360:five_prime_UTR 30.0%
! TAAATCAAGTATTTGAGGTG+TGG + chr3_1:8358912-8358931 Msa0347360:five_prime_UTR 30.0%
TAAAAAGGAGAAAGAGGAAA+AGG - chr3_1:8359051-8359070 None:intergenic 30.0%
! TTCCATTGTCTTGTTCTTTA+TGG + chr3_1:8359082-8359101 Msa0347360:intron 30.0%
TACCATAAAGAACAAGACAA+TGG - chr3_1:8359087-8359106 None:intergenic 30.0%
!!! GTAGAAGATTTTGTTTTGTG+TGG + chr3_1:8359162-8359181 Msa0347360:CDS 30.0%
!! GTGTAACGAAGATTTTGAAA+AGG + chr3_1:8359229-8359248 Msa0347360:CDS 30.0%
! TTCTTGACTTAGGACATTTT+TGG + chr3_1:8359356-8359375 Msa0347360:intron 30.0%
AATAAGCAGAAAACAACTCA+TGG + chr3_1:8359485-8359504 Msa0347360:intron 30.0%
! AGACTATTTGAGAAAGCATA+TGG - chr3_1:8359529-8359548 None:intergenic 30.0%
!! GATTAGCTTTAAGCTTATGA+GGG + chr3_1:8359616-8359635 Msa0347360:intron 30.0%
ATGTTCATGGAGAAGTTAAA+CGG + chr3_1:8359700-8359719 Msa0347360:intron 30.0%
AAAACGGGTAGAAGAAATTT+CGG - chr3_1:8360182-8360201 None:intergenic 30.0%
!! CTTTAGTTCTCTAACATCAT+CGG - chr3_1:8360233-8360252 None:intergenic 30.0%
TCGAAGAACTTTAAATAGTG+AGG + chr3_1:8360271-8360290 Msa0347360:intron 30.0%
CGAAGAACTTTAAATAGTGA+GGG + chr3_1:8360272-8360291 Msa0347360:intron 30.0%
GGGAAAAAATCATAGAAGAT+AGG + chr3_1:8360302-8360321 Msa0347360:intron 30.0%
AATCATAGAAGATAGGCAAA+AGG + chr3_1:8360309-8360328 Msa0347360:intron 30.0%
ATCATAGAAGATAGGCAAAA+GGG + chr3_1:8360310-8360329 Msa0347360:intron 30.0%
AAAATGAGTTATAAGTGGGA+GGG + chr3_1:8360434-8360453 Msa0347360:intron 30.0%
CAAAACCATATTACAAAGTG+GGG - chr3_1:8360463-8360482 None:intergenic 30.0%
!!! GTTGCCATATAATTTTGGTT+GGG - chr3_1:8360501-8360520 None:intergenic 30.0%
!! TGTTGCCATATAATTTTGGT+TGG - chr3_1:8360502-8360521 None:intergenic 30.0%
CTACTTCTTGGAATTTAGTT+TGG - chr3_1:8360688-8360707 None:intergenic 30.0%
ATTCCAAGAAGTAGACTATA+TGG + chr3_1:8360694-8360713 Msa0347360:intron 30.0%
! ATGGAATATGTAAGTTGAAG+TGG + chr3_1:8360771-8360790 Msa0347360:intron 30.0%
AAAACCCTTAAGTATGCATT+TGG + chr3_1:8360919-8360938 Msa0347360:intron 30.0%
TCATCCAAATGCATACTTAA+GGG - chr3_1:8360926-8360945 None:intergenic 30.0%
! TGATGATGTGTTTCAGAAAA+TGG + chr3_1:8361185-8361204 Msa0347360:CDS 30.0%
! ATGTGGATTTTAAATTGGCA+TGG + chr3_1:8361264-8361283 Msa0347360:CDS 30.0%
!! GATATTATGAAAGGTACTTG+GGG + chr3_1:8361388-8361407 Msa0347360:three_prime_UTR 30.0%
! AATATCTGGTTAGTCAAACT+TGG - chr3_1:8361419-8361438 None:intergenic 30.0%
ATGATTATTATCAGACTTGC+TGG - chr3_1:8361500-8361519 None:intergenic 30.0%
! ATGTAAAGTGCAAAGTATTC+TGG - chr3_1:8362269-8362288 None:intergenic 30.0%
ACTGTACTAAAAAATCCAGA+AGG - chr3_1:8362559-8362578 None:intergenic 30.0%
! AAAATACTTGAAAGAGCACA+TGG - chr3_1:8362666-8362685 None:intergenic 30.0%
AGATCTTGAAACTACATTTG+AGG + chr3_1:8363000-8363019 Msa0347360:three_prime_UTR 30.0%
TATGTTAAAATCTTACCGGA+TGG + chr3_1:8363086-8363105 Msa0347360:three_prime_UTR 30.0%
ACATTGTTTCCTCCTAATAA+TGG + chr3_1:8363266-8363285 Msa0347360:three_prime_UTR 30.0%
ATATGCATATGCTGAAAATC+AGG - chr3_1:8363352-8363371 None:intergenic 30.0%
AAAACAATTTCATTCCAGAG+TGG + chr3_1:8363556-8363575 Msa0347360:three_prime_UTR 30.0%
AAACAATTTCATTCCAGAGT+GGG + chr3_1:8363557-8363576 Msa0347360:three_prime_UTR 30.0%
GTGGTTATTATCACAGATAG+AGG + chr3_1:8358931-8358950 Msa0347360:five_prime_UTR 35.0%
CTTTCCTCATTGAAATACTG+TGG + chr3_1:8358954-8358973 Msa0347360:five_prime_UTR 35.0%
CATCTTAAATCTAACTCCAC+AGG + chr3_1:8359021-8359040 Msa0347360:CDS 35.0%
!! TCTGTCTTTCTTTGAAGCAT+AGG + chr3_1:8359202-8359221 Msa0347360:CDS 35.0%
ATACTATGTAACATGACCTG+AGG + chr3_1:8359314-8359333 Msa0347360:intron 35.0%
TACTATGTAACATGACCTGA+GGG + chr3_1:8359315-8359334 Msa0347360:intron 35.0%
GAACGTGATATTCTTGACTT+AGG + chr3_1:8359346-8359365 Msa0347360:intron 35.0%
TATAATCCAAACAGTTCCGT+AGG + chr3_1:8359584-8359603 Msa0347360:intron 35.0%
GCTTAAAGCTAATCCAAGAA+GGG - chr3_1:8359610-8359629 None:intergenic 35.0%
AGCTTAAAGCTAATCCAAGA+AGG - chr3_1:8359611-8359630 None:intergenic 35.0%
!! GGATTAGCTTTAAGCTTATG+AGG + chr3_1:8359615-8359634 Msa0347360:intron 35.0%
TGTTCATGGAGAAGTTAAAC+GGG + chr3_1:8359701-8359720 Msa0347360:intron 35.0%
TCACATTCTTTGATTGCTCA+GGG + chr3_1:8359914-8359933 Msa0347360:intron 35.0%
! AATTTCTTCTACCCGTTTTG+AGG + chr3_1:8360183-8360202 Msa0347360:CDS 35.0%
CGATGATGTTAGAGAACTAA+AGG + chr3_1:8360231-8360250 Msa0347360:CDS 35.0%
TTAAATAGTGAGGGAGAATG+AGG + chr3_1:8360281-8360300 Msa0347360:intron 35.0%
TAAATAGTGAGGGAGAATGA+GGG + chr3_1:8360282-8360301 Msa0347360:intron 35.0%
! AAAGGGACAAAGGCATAATA+TGG + chr3_1:8360327-8360346 Msa0347360:intron 35.0%
! AAGGGACAAAGGCATAATAT+GGG + chr3_1:8360328-8360347 Msa0347360:intron 35.0%
! AAAGGCATAATATGGGGTTA+TGG + chr3_1:8360335-8360354 Msa0347360:intron 35.0%
TTAACACTACTCATTGCTCT+CGG - chr3_1:8360385-8360404 None:intergenic 35.0%
GAAAATGAGTTATAAGTGGG+AGG + chr3_1:8360433-8360452 Msa0347360:intron 35.0%
TAGGCCCAACCAAAATTATA+TGG + chr3_1:8360494-8360513 Msa0347360:intron 35.0%
! GCTCTGTTGCCATATAATTT+TGG - chr3_1:8360506-8360525 None:intergenic 35.0%
AGACTTATCTCATCCAATGT+GGG - chr3_1:8360606-8360625 None:intergenic 35.0%
TAAATAGACTTGTGGAGAGA+GGG - chr3_1:8360654-8360673 None:intergenic 35.0%
TCTCCATATAGTCTACTTCT+TGG - chr3_1:8360700-8360719 None:intergenic 35.0%
TGAGTTAGACCAAAACCAAA+TGG + chr3_1:8360722-8360741 Msa0347360:intron 35.0%
!! CAAGTCATTCCATTTGGTTT+TGG - chr3_1:8360734-8360753 None:intergenic 35.0%
CTAACTCAAGTCATTCCATT+TGG - chr3_1:8360740-8360759 None:intergenic 35.0%
TGAGTTAGACCAAAACCAAA+TGG + chr3_1:8360722-8360741 Msa0347360:intron 35.0%
CTCATCCAAATGCATACTTA+AGG - chr3_1:8360927-8360946 None:intergenic 35.0%
CTTAAGTATGCATTTGGATG+AGG + chr3_1:8360925-8360944 Msa0347360:intron 35.0%
GTCATCACATCTAACTTCTA+AGG + chr3_1:8361057-8361076 Msa0347360:intron 35.0%
! CTTTTACTCTACGAAATCCT+GGG - chr3_1:8361230-8361249 None:intergenic 35.0%
! AAGGAGGTGAAGTATTTATG+TGG + chr3_1:8361247-8361266 Msa0347360:CDS 35.0%
! CAGATTGATAACCTTAGCAA+AGG + chr3_1:8361296-8361315 Msa0347360:CDS 35.0%
! TGTTCTCTTTTCCTTTGCTA+AGG - chr3_1:8361310-8361329 None:intergenic 35.0%
AAACTTCAGCACGTAATATC+TGG - chr3_1:8361433-8361452 None:intergenic 35.0%
! GACATTTTTCACGTGATTCT+TGG + chr3_1:8361602-8361621 Msa0347360:three_prime_UTR 35.0%
CTAAAAAATTGAGGACAACC+AGG + chr3_1:8361635-8361654 Msa0347360:three_prime_UTR 35.0%
TTCATTGATACACACAGACT+TGG - chr3_1:8361762-8361781 None:intergenic 35.0%
AAGTCTGTGTGTATCAATGA+AGG + chr3_1:8361761-8361780 Msa0347360:intron 35.0%
!!! GACATTTTATTAGAGGTGCT+CGG + chr3_1:8362030-8362049 Msa0347360:three_prime_UTR 35.0%
GGAAATAATCAACTCAACTG+TGG + chr3_1:8362083-8362102 Msa0347360:three_prime_UTR 35.0%
!! ACCATGCTTGCTATTACATA+AGG + chr3_1:8362236-8362255 Msa0347360:intron 35.0%
ACCTTATGTAATAGCAAGCA+TGG - chr3_1:8362240-8362259 None:intergenic 35.0%
CATGTCAAATGCTACCTAAA+AGG - chr3_1:8362317-8362336 None:intergenic 35.0%
AGAACATCTTCTGTTGTCTA+AGG + chr3_1:8362365-8362384 Msa0347360:intron 35.0%
! TATTTGAAACCCTATTCGGT+AGG - chr3_1:8362498-8362517 None:intergenic 35.0%
TTTGTGCTAATGGCATATTG+TGG - chr3_1:8362763-8362782 None:intergenic 35.0%
TTGACAACACTTTGTGCTAA+TGG - chr3_1:8362773-8362792 None:intergenic 35.0%
!! CACAAAGTGTTGTCAAATAG+TGG + chr3_1:8362777-8362796 Msa0347360:intron 35.0%
! TTGCCGATTGTAGAAAATAG+TGG - chr3_1:8362848-8362867 None:intergenic 35.0%
CTTGAAACTACATTTGAGGA+AGG + chr3_1:8363004-8363023 Msa0347360:three_prime_UTR 35.0%
TGTCATCTAAGTGAAAACCA+CGG + chr3_1:8363192-8363211 Msa0347360:three_prime_UTR 35.0%
! CTTTTCACAAACTGAAACTG+TGG - chr3_1:8363298-8363317 None:intergenic 35.0%
!!! TATTTTAAGGCTACACTCTC+AGG + chr3_1:8363369-8363388 Msa0347360:three_prime_UTR 35.0%
GTAGTTCTCAAAATCATCTG+CGG - chr3_1:8363449-8363468 None:intergenic 35.0%
ATCTCTTGAAAGCAATGTAG+TGG + chr3_1:8363496-8363515 Msa0347360:three_prime_UTR 35.0%
CACACCACAGTATTTCAATG+AGG - chr3_1:8358961-8358980 None:intergenic 40.0%
AAGAGGAAAAGGTTAACCTG+TGG - chr3_1:8359040-8359059 None:intergenic 40.0%
GCTTGCAGATGATAAAACAC+AGG + chr3_1:8359133-8359152 Msa0347360:intron 40.0%
!! CTTTCTTTGAAGCATAGGCA+TGG + chr3_1:8359207-8359226 Msa0347360:CDS 40.0%
CTCACATTCTTTGATTGCTC+AGG + chr3_1:8359913-8359932 Msa0347360:intron 40.0%
CCTGATAATACAGAAGCAGT+AGG - chr3_1:8360054-8360073 None:intergenic 40.0%
CCTACTGCTTCTGTATTATC+AGG + chr3_1:8360051-8360070 Msa0347360:CDS 40.0%
AGACAGAGAACTCCTCAAAA+CGG - chr3_1:8360198-8360217 None:intergenic 40.0%
AAGATAGGCAAAAGGGACAA+AGG + chr3_1:8360317-8360336 Msa0347360:intron 40.0%
! AGGGACAAAGGCATAATATG+GGG + chr3_1:8360329-8360348 Msa0347360:intron 40.0%
TAACACTACTCATTGCTCTC+GGG - chr3_1:8360384-8360403 None:intergenic 40.0%
TAGTGTTAAGAGTCTCACGT+TGG + chr3_1:8360396-8360415 Msa0347360:intron 40.0%
GGATTCCCCACTTTGTAATA+TGG + chr3_1:8360455-8360474 Msa0347360:intron 40.0%
!!! TGGTTTTGTAGGTTCGAGTT+AGG + chr3_1:8360475-8360494 Msa0347360:intron 40.0%
CAGACTTATCTCATCCAATG+TGG - chr3_1:8360607-8360626 None:intergenic 40.0%
CTAAATAGACTTGTGGAGAG+AGG - chr3_1:8360655-8360674 None:intergenic 40.0%
ACAAAAGATCGAATTGCGAG+CGG + chr3_1:8360960-8360979 Msa0347360:intron 40.0%
AAGTGTAAACTCTTCTGTCC+AGG + chr3_1:8361122-8361141 Msa0347360:intron 40.0%
TATCTGGAAACAGAACACAG+AGG + chr3_1:8361157-8361176 Msa0347360:CDS 40.0%
! CCTTTTACTCTACGAAATCC+TGG - chr3_1:8361231-8361250 None:intergenic 40.0%
CCAGGATTTCGTAGAGTAAA+AGG + chr3_1:8361228-8361247 Msa0347360:CDS 40.0%
GGATTTCGTAGAGTAAAAGG+AGG + chr3_1:8361231-8361250 Msa0347360:CDS 40.0%
! ACGTGCTGAAGTTTTCTGTT+TGG + chr3_1:8361439-8361458 Msa0347360:three_prime_UTR 40.0%
!!! ATCAGACTTGCTGGTGATTT+TGG - chr3_1:8361491-8361510 None:intergenic 40.0%
TTCGAAAGAAAACCGTTTCG+AGG - chr3_1:8361550-8361569 None:intergenic 40.0%
! CTTACATTTGGCGTTTTTCC+TGG - chr3_1:8361656-8361675 None:intergenic 40.0%
ATTGATACACACAGACTTGG+TGG - chr3_1:8361759-8361778 None:intergenic 40.0%
ATGCTACCTAAAAGGCTTCA+AGG - chr3_1:8362309-8362328 None:intergenic 40.0%
ACATCTTCTGTTGTCTAAGG+TGG + chr3_1:8362368-8362387 Msa0347360:intron 40.0%
AAATATCCTGCCTACCGAAT+AGG + chr3_1:8362485-8362504 Msa0347360:intron 40.0%
AATATCCTGCCTACCGAATA+GGG + chr3_1:8362486-8362505 Msa0347360:intron 40.0%
GGATCAGAGTTGTCAAATAG+TGG + chr3_1:8362700-8362719 Msa0347360:intron 40.0%
TTGTCAAATAGTGGCCATAG+CGG + chr3_1:8362786-8362805 Msa0347360:intron 40.0%
TTGCTGGGAAAATTCTTTGC+AGG + chr3_1:8362931-8362950 Msa0347360:intron 40.0%
GCTTCAAGAGTAGAATTGAC+AGG + chr3_1:8363057-8363076 Msa0347360:three_prime_UTR 40.0%
ATGGAGTGACATTGCTTCTT+CGG + chr3_1:8363105-8363124 Msa0347360:three_prime_UTR 40.0%
TGGTGTTCACCATTATTAGG+AGG - chr3_1:8363278-8363297 None:intergenic 40.0%
CTGTGGTGTTCACCATTATT+AGG - chr3_1:8363281-8363300 None:intergenic 40.0%
! TAAGTTTTCCCATGCATCGA+TGG - chr3_1:8363398-8363417 None:intergenic 40.0%
ATCGATGCATGGGAAAACTT+AGG + chr3_1:8363397-8363416 Msa0347360:three_prime_UTR 40.0%
AATACTATCTGAACCCACTC+TGG - chr3_1:8363573-8363592 None:intergenic 40.0%
GGCGAAACACAAATGTTCTT+TGG - chr3_1:8363655-8363674 None:intergenic 40.0%
GAACATTTGTGTTTCGCCAT+AGG + chr3_1:8363657-8363676 Msa0347360:three_prime_UTR 40.0%
GAGAAGTTAAACGGGACTAC+AGG + chr3_1:8359709-8359728 Msa0347360:intron 45.0%
CAGGGAAACTAATCCTCACA+TGG + chr3_1:8359932-8359951 Msa0347360:intron 45.0%
GACAGAGAACTCCTCAAAAC+GGG - chr3_1:8360197-8360216 None:intergenic 45.0%
GTCTCACGTTGGATGAGATA+AGG + chr3_1:8360407-8360426 Msa0347360:intron 45.0%
ACTCTACGAAATCCTGGGAT+CGG - chr3_1:8361225-8361244 None:intergenic 45.0%
! TGTCAACTGACTCCTCGAAA+CGG + chr3_1:8361535-8361554 Msa0347360:three_prime_UTR 45.0%
! TAGCCACCTTGAAGCCTTTT+AGG + chr3_1:8362300-8362319 Msa0347360:intron 45.0%
CTACCTAAAAGGCTTCAAGG+TGG - chr3_1:8362306-8362325 None:intergenic 45.0%
ACAATGTTATAGCGCCGCTA+TGG - chr3_1:8362803-8362822 None:intergenic 45.0%
AGAAGCAATGTCACTCCATC+CGG - chr3_1:8363104-8363123 None:intergenic 45.0%
CATCTAAGTGAAAACCACGG+TGG + chr3_1:8363195-8363214 Msa0347360:three_prime_UTR 45.0%
TCAGGATTCCATCGATGCAT+GGG + chr3_1:8363387-8363406 Msa0347360:three_prime_UTR 45.0%
GGACATCACTCTACAAACTC+TGG + chr3_1:8363418-8363437 Msa0347360:three_prime_UTR 45.0%
GCTAATCCAAGAAGGGCCTA+CGG - chr3_1:8359603-8359622 None:intergenic 50.0%
CACATGCATAGTGCCATGTG+AGG - chr3_1:8359948-8359967 None:intergenic 50.0%
AGAGCCCATTGAAGATCCAC+TGG + chr3_1:8360521-8360540 Msa0347360:intron 50.0%
GAGCCCATTGAAGATCCACT+GGG + chr3_1:8360522-8360541 Msa0347360:intron 50.0%
CAGCCCAGTGGATCTTCAAT+GGG - chr3_1:8360528-8360547 None:intergenic 50.0%
TGCTCCAGATGTCCAATCCT+AGG + chr3_1:8360557-8360576 Msa0347360:intron 50.0%
ATGTCCAATCCTAGGCGTGA+GGG + chr3_1:8360565-8360584 Msa0347360:intron 50.0%
GTGTGTTACGAGTCCCACAT+TGG + chr3_1:8360590-8360609 Msa0347360:intron 50.0%
! TTCTGTCCAGGTAAGCATCG+AGG + chr3_1:8361134-8361153 Msa0347360:intron 50.0%
CAGATACCTCGATGCTTACC+TGG - chr3_1:8361143-8361162 None:intergenic 50.0%
!! CAGGTAAGCATCGAGGTATC+TGG + chr3_1:8361141-8361160 Msa0347360:intron 50.0%
!! ACACACAGACTTGGTGGTCA+AGG - chr3_1:8361753-8361772 None:intergenic 50.0%
CTCAACTGTGGCTGAGTATG+TGG + chr3_1:8362095-8362114 Msa0347360:three_prime_UTR 50.0%
TGTGGCTGAGTATGTGGAGA+AGG + chr3_1:8362101-8362120 Msa0347360:three_prime_UTR 50.0%
TGAAACCCTATTCGGTAGGC+AGG - chr3_1:8362494-8362513 None:intergenic 50.0%
TGCTTCTTCGGTCTGAACCA+AGG + chr3_1:8363117-8363136 Msa0347360:three_prime_UTR 50.0%
AAAACCACGGTGGCATTTCG+TGG + chr3_1:8363205-8363224 Msa0347360:three_prime_UTR 50.0%
ATAACCACGAAATGCCACCG+TGG - chr3_1:8363212-8363231 None:intergenic 50.0%
CTCAGGATTCCATCGATGCA+TGG + chr3_1:8363386-8363405 Msa0347360:three_prime_UTR 50.0%
GTAACATGACCTGAGGGCTG+AGG + chr3_1:8359321-8359340 Msa0347360:intron 55.0%
GAAGGGCCTACGGAACTGTT+TGG - chr3_1:8359593-8359612 None:intergenic 55.0%
ACAGTTCCGTAGGCCCTTCT+TGG + chr3_1:8359594-8359613 Msa0347360:intron 55.0%
ATTGCTCTCGGGCTCAGCTA+AGG - chr3_1:8360373-8360392 None:intergenic 55.0%
GCAGCCCAGTGGATCTTCAA+TGG - chr3_1:8360529-8360548 None:intergenic 55.0%
TGAAGATCCACTGGGCTGCT+TGG + chr3_1:8360530-8360549 Msa0347360:intron 55.0%
CACGCCTAGGATTGGACATC+TGG - chr3_1:8360564-8360583 None:intergenic 55.0%
GATGTCCAATCCTAGGCGTG+AGG + chr3_1:8360564-8360583 Msa0347360:intron 55.0%
TGTCCAATCCTAGGCGTGAG+GGG + chr3_1:8360566-8360585 Msa0347360:intron 55.0%
AAAGCTGCACAACCGATCCC+AGG + chr3_1:8361210-8361229 Msa0347360:CDS 55.0%
GCTGTAGCGCTGTAGTACAG+TGG + chr3_1:8362724-8362743 Msa0347360:intron 55.0%
GCATGATCCAAGCAGCCCAG+TGG - chr3_1:8360540-8360559 None:intergenic 60.0%
ACACCCCTCACGCCTAGGAT+TGG - chr3_1:8360572-8360591 None:intergenic 60.0%
AACACACACCCCTCACGCCT+AGG - chr3_1:8360577-8360596 None:intergenic 60.0%
CACGTTCAGCCTCAGCCCTC+AGG - chr3_1:8359333-8359352 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 8358836 8363683 8358836 ID=Msa0347360;Name=Msa0347360
chr3_1 mRNA 8358836 8363683 8358836 ID=Msa0347360-mRNA-1;Parent=Msa0347360;Name=Msa0347360-mRNA-1;_AED=0.05;_eAED=0.05;_QI=162|0.83|0.85|1|0.83|0.85|7|1135|174
chr3_1 exon 8358836 8359042 8358836 ID=Msa0347360-mRNA-1:exon:2370;Parent=Msa0347360-mRNA-1
chr3_1 exon 8359141 8359277 8359141 ID=Msa0347360-mRNA-1:exon:2371;Parent=Msa0347360-mRNA-1
chr3_1 exon 8360032 8360072 8360032 ID=Msa0347360-mRNA-1:exon:2372;Parent=Msa0347360-mRNA-1
chr3_1 exon 8360176 8360252 8360176 ID=Msa0347360-mRNA-1:exon:2373;Parent=Msa0347360-mRNA-1
chr3_1 exon 8361144 8361670 8361144 ID=Msa0347360-mRNA-1:exon:2374;Parent=Msa0347360-mRNA-1
chr3_1 exon 8362021 8362122 8362021 ID=Msa0347360-mRNA-1:exon:2375;Parent=Msa0347360-mRNA-1
chr3_1 exon 8362953 8363683 8362953 ID=Msa0347360-mRNA-1:exon:2376;Parent=Msa0347360-mRNA-1
chr3_1 five_prime_UTR 8358836 8358997 8358836 ID=Msa0347360-mRNA-1:five_prime_utr;Parent=Msa0347360-mRNA-1
chr3_1 CDS 8358998 8359042 8358998 ID=Msa0347360-mRNA-1:cds;Parent=Msa0347360-mRNA-1
chr3_1 CDS 8359141 8359277 8359141 ID=Msa0347360-mRNA-1:cds;Parent=Msa0347360-mRNA-1
chr3_1 CDS 8360032 8360072 8360032 ID=Msa0347360-mRNA-1:cds;Parent=Msa0347360-mRNA-1
chr3_1 CDS 8360176 8360252 8360176 ID=Msa0347360-mRNA-1:cds;Parent=Msa0347360-mRNA-1
chr3_1 CDS 8361144 8361368 8361144 ID=Msa0347360-mRNA-1:cds;Parent=Msa0347360-mRNA-1
chr3_1 three_prime_UTR 8361369 8361670 8361369 ID=Msa0347360-mRNA-1:three_prime_utr;Parent=Msa0347360-mRNA-1
chr3_1 three_prime_UTR 8362021 8362122 8362021 ID=Msa0347360-mRNA-1:three_prime_utr;Parent=Msa0347360-mRNA-1
chr3_1 three_prime_UTR 8362953 8363683 8362953 ID=Msa0347360-mRNA-1:three_prime_utr;Parent=Msa0347360-mRNA-1
Gene Sequence

>Msa0347360

ATGCATACAGCATCTCAAAGCTTCATCTTAAATCTAACTCCACAGATGATAAAACACAGGCAGAGAGTAGAAGATTTTGTTTTGTGTGGCTCGAATTCTAGACATTTCTGTCTTTCTTTGAAGCATAGGCATGGTGTAACGAAGATTTTGAAAAGGCATTACTTTTTTCTTCTTCTTTCTTTGGAACAAAGTAGATGTCTTCCTACTGCTTCTGTATTATCAGATACCGAAATTTCTTCTACCCGTTTTGAGGAGTTCTCTGTCTCTACTGTTGACACCGATGATGTTAGAGAACTAAAGGTAAGCATCGAGGTATCTGGAAACAGAACACAGAGGACTTTTGATGATGTGTTTCAGAAAATGGTTAAAGCTGCACAACCGATCCCAGGATTTCGTAGAGTAAAAGGAGGTGAAGTATTTATGTGGATTTTAAATTGGCATGGTTTATTCATCAGATTGATAACCTTAGCAAAGGAAAAGAGAACAGAACAAGAAGTCAAGAAACTATTTACTTTTTTAGCATAA

Protein sequence

>Msa0347360

MHTASQSFILNLTPQMIKHRQRVEDFVLCGSNSRHFCLSLKHRHGVTKILKRHYFFLLLSLEQSRCLPTASVLSDTEISSTRFEEFSVSTVDTDDVRELKVSIEVSGNRTQRTFDDVFQKMVKAAQPIPGFRRVKGGEVFMWILNWHGLFIRLITLAKEKRTEQEVKKLFTFLA*