Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010800 | XP_003621757.1 | 99.335 | 451 | 3 | 0 | 1 | 451 | 1 | 451 | 0.0 | 922 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010800 | sp|Q8LJW3|ACR4_ARATH | 57.395 | 453 | 180 | 6 | 7 | 451 | 4 | 451 | 0.0 | 519 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010800 | G7KUS8 | 99.335 | 451 | 3 | 0 | 1 | 451 | 1 | 451 | 0.0 | 922 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000550 | Msa1010800 | -0.802297 | 5.998792e-49 | -8.615850e-47 |
| Msa0005350 | Msa1010800 | 0.814060 | 1.867445e-51 | -8.615850e-47 |
| Msa0048000 | Msa1010800 | 0.810835 | 9.461727e-51 | -8.615850e-47 |
| Msa0053900 | Msa1010800 | 0.825560 | 4.384572e-54 | -8.615850e-47 |
| Msa0069260 | Msa1010800 | 0.813666 | 2.280587e-51 | -8.615850e-47 |
| Msa0069280 | Msa1010800 | 0.803114 | 4.067996e-49 | -8.615850e-47 |
| Msa0069310 | Msa1010800 | 0.828682 | 7.848440e-55 | -8.615850e-47 |
| Msa0099730 | Msa1010800 | 0.810333 | 1.214135e-50 | -8.615850e-47 |
| Msa0610370 | Msa1010800 | 0.821177 | 4.636968e-53 | -8.615850e-47 |
| Msa0613460 | Msa1010800 | 0.823471 | 1.360567e-53 | -8.615850e-47 |
| Msa0623080 | Msa1010800 | 0.802631 | 5.120149e-49 | -8.615850e-47 |
| Msa0626090 | Msa1010800 | 0.802960 | 4.376735e-49 | -8.615850e-47 |
| Msa0650900 | Msa1010800 | 0.815459 | 9.147525e-52 | -8.615850e-47 |
| Msa0654010 | Msa1010800 | 0.825348 | 4.923179e-54 | -8.615850e-47 |
| Msa0658570 | Msa1010800 | 0.804055 | 2.595621e-49 | -8.615850e-47 |
| Msa0669850 | Msa1010800 | 0.804200 | 2.421278e-49 | -8.615850e-47 |
| Msa0689010 | Msa1010800 | 0.801270 | 9.744886e-49 | -8.615850e-47 |
| Msa0693380 | Msa1010800 | 0.820580 | 6.362405e-53 | -8.615850e-47 |
| Msa0716840 | Msa1010800 | 0.807556 | 4.771950e-50 | -8.615850e-47 |
| Msa0743260 | Msa1010800 | 0.830338 | 3.107536e-55 | -8.615850e-47 |
| Msa0791820 | Msa1010800 | 0.807439 | 5.051809e-50 | -8.615850e-47 |
| Msa0820850 | Msa1010800 | 0.802955 | 4.387620e-49 | -8.615850e-47 |
| Msa0140390 | Msa1010800 | 0.800285 | 1.548106e-48 | -8.615850e-47 |
| Msa0148360 | Msa1010800 | 0.822879 | 1.870227e-53 | -8.615850e-47 |
| Msa0172350 | Msa1010800 | 0.811758 | 5.965331e-51 | -8.615850e-47 |
| Msa0178930 | Msa1010800 | 0.813286 | 2.764143e-51 | -8.615850e-47 |
| Msa0223380 | Msa1010800 | 0.804920 | 1.713317e-49 | -8.615850e-47 |
| Msa0376590 | Msa1010800 | 0.813446 | 2.549271e-51 | -8.615850e-47 |
| Msa0389810 | Msa1010800 | 0.807812 | 4.209804e-50 | -8.615850e-47 |
| Msa0404000 | Msa1010800 | 0.814983 | 1.166869e-51 | -8.615850e-47 |
| Msa0404030 | Msa1010800 | 0.822740 | 2.015512e-53 | -8.615850e-47 |
| Msa0442850 | Msa1010800 | 0.826355 | 2.839754e-54 | -8.615850e-47 |
| Msa0468130 | Msa1010800 | 0.805446 | 1.329859e-49 | -8.615850e-47 |
| Msa0473240 | Msa1010800 | 0.819410 | 1.178654e-52 | -8.615850e-47 |
| Msa0482190 | Msa1010800 | -0.818957 | 1.494603e-52 | -8.615850e-47 |
| Msa0982270 | Msa1010800 | 0.818929 | 1.516204e-52 | -8.615850e-47 |
| Msa1010800 | Msa1021340 | 0.800557 | 1.363026e-48 | -8.615850e-47 |
| Msa1010800 | Msa1039880 | 0.804652 | 1.949249e-49 | -8.615850e-47 |
| Msa1010800 | Msa1046300 | 0.815271 | 1.007152e-51 | -8.615850e-47 |
| Msa1010800 | Msa1047720 | 0.810327 | 1.218141e-50 | -8.615850e-47 |
| Msa1010800 | Msa1052390 | 0.920992 | 6.331077e-88 | -8.615850e-47 |
| Msa1010800 | Msa1053260 | 0.800255 | 1.570160e-48 | -8.615850e-47 |
| Msa1010800 | Msa1084260 | 0.816296 | 5.950359e-52 | -8.615850e-47 |
| Msa1010800 | Msa1085300 | 0.815647 | 8.306902e-52 | -8.615850e-47 |
| Msa1010800 | Msa1095480 | 0.818611 | 1.790800e-52 | -8.615850e-47 |
| Msa1010800 | Msa1140670 | 0.947299 | 8.805636e-106 | -8.615850e-47 |
| Msa1010800 | Msa1142500 | 0.811142 | 8.117282e-51 | -8.615850e-47 |
| Msa1010800 | Msa1233500 | 0.813025 | 3.154599e-51 | -8.615850e-47 |
| Msa1010800 | Msa1236070 | -0.802152 | 6.424974e-49 | -8.615850e-47 |
| Msa1010800 | Msa1258380 | -0.818374 | 2.026989e-52 | -8.615850e-47 |
| Msa1010800 | Msa1300350 | -0.801481 | 8.824714e-49 | -8.615850e-47 |
| Msa1010800 | Msa1307740 | 0.808503 | 2.999281e-50 | -8.615850e-47 |
| Msa1010800 | Msa1340270 | 0.808943 | 2.415339e-50 | -8.615850e-47 |
| Msa1010800 | Msa1361850 | 0.805205 | 1.493541e-49 | -8.615850e-47 |
| Msa1010800 | Msa1362880 | 0.820539 | 6.501039e-53 | -8.615850e-47 |
| Msa1010800 | Msa1369530 | 0.809299 | 2.026155e-50 | -8.615850e-47 |
| Msa1010800 | Msa1376890 | 0.813045 | 3.122198e-51 | -8.615850e-47 |
| Msa1010800 | Msa1404540 | 0.825189 | 5.369508e-54 | -8.615850e-47 |
| Msa1010800 | Msa1431060 | 0.827205 | 1.779061e-54 | -8.615850e-47 |
| Msa1010800 | Msa1438700 | 0.816283 | 5.989077e-52 | -8.615850e-47 |
| Msa1010800 | Msa1444250 | -0.823380 | 1.428975e-53 | -8.615850e-47 |
| Msa0260810 | Msa1010800 | 0.814118 | 1.812964e-51 | -8.615850e-47 |
| Msa0267760 | Msa1010800 | 0.806508 | 7.949457e-50 | -8.615850e-47 |
| Msa0320100 | Msa1010800 | 0.808416 | 3.130036e-50 | -8.615850e-47 |
| Msa0323080 | Msa1010800 | 0.810077 | 1.378746e-50 | -8.615850e-47 |
| Msa0335040 | Msa1010800 | 0.801803 | 7.580077e-49 | -8.615850e-47 |
| Msa0344830 | Msa1010800 | 0.806363 | 8.529121e-50 | -8.615850e-47 |
| Msa0347360 | Msa1010800 | 0.809250 | 2.076601e-50 | -8.615850e-47 |
| Msa0484780 | Msa1010800 | 0.813744 | 2.192157e-51 | -8.615850e-47 |
| Msa0485500 | Msa1010800 | -0.810089 | 1.370781e-50 | -8.615850e-47 |
| Msa0516370 | Msa1010800 | 0.824662 | 7.150483e-54 | -8.615850e-47 |
| Msa0517490 | Msa1010800 | 0.816791 | 4.608066e-52 | -8.615850e-47 |
| Msa0526710 | Msa1010800 | 0.811770 | 5.927804e-51 | -8.615850e-47 |
| Msa0531990 | Msa1010800 | -0.815513 | 8.893798e-52 | -8.615850e-47 |
| Msa0532100 | Msa1010800 | -0.821590 | 3.723270e-53 | -8.615850e-47 |
| Msa0535030 | Msa1010800 | 0.803884 | 2.817371e-49 | -8.615850e-47 |
| Msa0535060 | Msa1010800 | 0.807115 | 5.917403e-50 | -8.615850e-47 |
| Msa0555950 | Msa1010800 | 0.811020 | 8.628146e-51 | -8.615850e-47 |
| Msa0558690 | Msa1010800 | 0.820965 | 5.188941e-53 | -8.615850e-47 |
| Msa0567020 | Msa1010800 | 0.811699 | 6.144878e-51 | -8.615850e-47 |
| Msa0601850 | Msa1010800 | 0.813710 | 2.230023e-51 | -8.615850e-47 |
| Msa0861130 | Msa1010800 | 0.803210 | 3.885884e-49 | -8.615850e-47 |
| Msa0874500 | Msa1010800 | 0.819930 | 8.964618e-53 | -8.615850e-47 |
| Msa0874570 | Msa1010800 | 0.801045 | 1.083336e-48 | -8.615850e-47 |
| Msa0891040 | Msa1010800 | 0.801257 | 9.805940e-49 | -8.615850e-47 |
| Msa0976250 | Msa1010800 | 0.805060 | 1.602093e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010800 | MtrunA17_Chr7g0222461 | 99.335 | 451 | 3 | 0 | 1 | 451 | 1 | 451 | 0.0 | 922 |
| Msa1010800 | MtrunA17_Chr5g0420221 | 58.758 | 451 | 173 | 6 | 4 | 451 | 11 | 451 | 1.99e-180 | 511 |
| Msa1010800 | MtrunA17_Chr7g0224571 | 56.250 | 448 | 184 | 5 | 10 | 451 | 1 | 442 | 1.46e-175 | 499 |
| Msa1010800 | MtrunA17_Chr3g0125661 | 55.012 | 409 | 172 | 5 | 10 | 409 | 9 | 414 | 3.00e-157 | 452 |
| Msa1010800 | MtrunA17_Chr5g0398581 | 51.794 | 446 | 197 | 5 | 12 | 451 | 8 | 441 | 1.40e-153 | 443 |
| Msa1010800 | MtrunA17_Chr1g0159541 | 51.786 | 448 | 197 | 8 | 10 | 441 | 9 | 453 | 1.55e-153 | 443 |
| Msa1010800 | MtrunA17_Chr4g0056741 | 50.998 | 451 | 193 | 5 | 12 | 451 | 8 | 441 | 6.65e-153 | 441 |
| Msa1010800 | MtrunA17_Chr5g0400941 | 43.662 | 426 | 217 | 6 | 10 | 413 | 9 | 433 | 9.58e-121 | 360 |
| Msa1010800 | MtrunA17_Chr4g0054261 | 37.500 | 472 | 263 | 6 | 10 | 449 | 28 | 499 | 1.34e-97 | 301 |
| Msa1010800 | MtrunA17_Chr7g0264801 | 22.905 | 358 | 240 | 11 | 36 | 371 | 20 | 363 | 4.83e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1010800 | AT1G69040.1 | 57.395 | 453 | 180 | 6 | 7 | 451 | 4 | 451 | 0.0 | 519 |
| Msa1010800 | AT1G69040.2 | 57.395 | 453 | 180 | 6 | 7 | 451 | 8 | 455 | 0.0 | 519 |
| Msa1010800 | AT3G01990.7 | 58.040 | 398 | 161 | 4 | 11 | 407 | 17 | 409 | 7.75e-164 | 469 |
| Msa1010800 | AT3G01990.5 | 58.040 | 398 | 161 | 4 | 11 | 407 | 17 | 409 | 7.75e-164 | 469 |
| Msa1010800 | AT3G01990.10 | 58.040 | 398 | 161 | 4 | 11 | 407 | 3 | 395 | 9.73e-164 | 469 |
| Msa1010800 | AT3G01990.1 | 58.040 | 398 | 161 | 4 | 11 | 407 | 3 | 395 | 9.73e-164 | 469 |
| Msa1010800 | AT3G01990.6 | 58.040 | 398 | 161 | 4 | 11 | 407 | 17 | 409 | 1.24e-163 | 469 |
| Msa1010800 | AT3G01990.11 | 58.040 | 398 | 161 | 4 | 11 | 407 | 3 | 395 | 1.81e-163 | 468 |
| Msa1010800 | AT2G03730.2 | 53.846 | 455 | 192 | 7 | 7 | 449 | 8 | 456 | 5.94e-161 | 462 |
| Msa1010800 | AT2G03730.1 | 53.846 | 455 | 192 | 7 | 7 | 449 | 8 | 456 | 5.94e-161 | 462 |
| Msa1010800 | AT1G76990.4 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.55e-160 | 461 |
| Msa1010800 | AT1G76990.5 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.55e-160 | 461 |
| Msa1010800 | AT1G76990.2 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.55e-160 | 461 |
| Msa1010800 | AT1G76990.3 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.55e-160 | 461 |
| Msa1010800 | AT1G76990.1 | 55.501 | 409 | 169 | 4 | 10 | 409 | 9 | 413 | 2.55e-160 | 461 |
| Msa1010800 | AT1G12420.1 | 50.667 | 450 | 196 | 8 | 12 | 451 | 8 | 441 | 2.53e-142 | 414 |
| Msa1010800 | AT5G25320.1 | 43.763 | 489 | 220 | 11 | 10 | 444 | 9 | 496 | 3.34e-138 | 406 |
| Msa1010800 | AT4G22780.1 | 47.174 | 460 | 201 | 11 | 12 | 449 | 8 | 447 | 1.56e-134 | 395 |
| Msa1010800 | AT4G22780.1 | 30.409 | 171 | 104 | 2 | 10 | 178 | 218 | 375 | 2.71e-11 | 65.9 |
| Msa1010800 | AT4G22780.2 | 47.174 | 460 | 201 | 11 | 12 | 449 | 8 | 447 | 1.56e-134 | 395 |
| Msa1010800 | AT4G22780.2 | 30.409 | 171 | 104 | 2 | 10 | 178 | 218 | 375 | 2.71e-11 | 65.9 |
| Msa1010800 | AT5G25320.3 | 44.105 | 458 | 203 | 9 | 39 | 444 | 1 | 457 | 7.38e-134 | 394 |
| Msa1010800 | AT3G01990.4 | 57.057 | 333 | 137 | 4 | 11 | 342 | 17 | 344 | 1.69e-128 | 376 |
| Msa1010800 | AT3G01990.9 | 57.057 | 333 | 137 | 4 | 11 | 342 | 3 | 330 | 1.85e-128 | 375 |
| Msa1010800 | AT3G01990.2 | 57.622 | 328 | 133 | 4 | 11 | 337 | 17 | 339 | 3.22e-128 | 375 |
| Msa1010800 | AT5G65890.1 | 45.863 | 423 | 204 | 9 | 10 | 409 | 10 | 430 | 3.31e-121 | 362 |
| Msa1010800 | AT5G65890.3 | 45.863 | 423 | 204 | 9 | 10 | 409 | 10 | 430 | 3.31e-121 | 362 |
| Msa1010800 | AT1G12420.2 | 49.091 | 385 | 170 | 8 | 77 | 451 | 1 | 369 | 1.52e-110 | 331 |
| Msa1010800 | AT3G01990.3 | 54.762 | 294 | 125 | 3 | 11 | 302 | 17 | 304 | 3.50e-106 | 318 |
| Msa1010800 | AT3G01990.8 | 54.762 | 294 | 125 | 3 | 11 | 302 | 3 | 290 | 6.23e-106 | 317 |
| Msa1010800 | AT5G25320.2 | 43.169 | 366 | 169 | 8 | 10 | 337 | 9 | 373 | 4.40e-102 | 309 |
| Msa1010800 | AT5G65890.4 | 43.684 | 380 | 189 | 9 | 53 | 409 | 1 | 378 | 5.45e-102 | 311 |
| Msa1010800 | AT5G65890.2 | 43.684 | 380 | 189 | 9 | 53 | 409 | 1 | 378 | 5.45e-102 | 311 |
| Msa1010800 | AT5G65890.5 | 43.791 | 306 | 154 | 6 | 120 | 409 | 13 | 316 | 2.91e-83 | 261 |
| Msa1010800 | AT2G39570.1 | 23.229 | 353 | 246 | 11 | 37 | 371 | 21 | 366 | 2.53e-11 | 65.9 |
Find 103 sgRNAs with CRISPR-Local
Find 200 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTTTGTACCTTTGAAAAT+TGG | 0.118377 | 7_1:+14104119 | None:intergenic |
| TTCTGTTCTGTTTCAAACTA+TGG | 0.197312 | 7_1:-14104010 | Msa1010800:exon |
| ATCTGATGGTGGATGGTTTA+TGG | 0.205537 | 7_1:-14103583 | Msa1010800:CDS |
| TTTCATGTTACTGATCAAAA+TGG | 0.211096 | 7_1:-14103411 | Msa1010800:CDS |
| TTCACTCTTAACTGGATTTC+CGG | 0.229487 | 7_1:+14101048 | None:intergenic |
| AGAAGCTTATTTCAAACTTT+TGG | 0.244045 | 7_1:+14100611 | None:intergenic |
| TCAATTGTTTCACTCTTAAC+TGG | 0.271268 | 7_1:+14101040 | None:intergenic |
| GGTGTAAAGCTCGAACTTTC+CGG | 0.271281 | 7_1:-14101199 | Msa1010800:CDS |
| CAGAACAACAACTTTGATAA+AGG | 0.291767 | 7_1:-14103793 | Msa1010800:intron |
| TTTATCTAGGCATGTTTCAT+TGG | 0.353143 | 7_1:-14100701 | Msa1010800:three_prime_UTR |
| CCGCTACCACATTGCATTTG+AGG | 0.353645 | 7_1:+14102629 | None:intergenic |
| TCTTTGTACCTTTGAAAATT+GGG | 0.357409 | 7_1:+14104120 | None:intergenic |
| GTTGATGATTGCATCGATAA+AGG | 0.360000 | 7_1:-14102319 | Msa1010800:CDS |
| GAGAGGTTTCTTTACAATCT+AGG | 0.372115 | 7_1:-14100899 | Msa1010800:CDS |
| AATAGTAACTTCGGTCGATC+TGG | 0.375903 | 7_1:+14102271 | None:intergenic |
| CATACAACGATCGAGTTAAC+AGG | 0.410366 | 7_1:-14102700 | Msa1010800:CDS |
| TGAAGGAACAGAAGCATATC+AGG | 0.414309 | 7_1:-14102188 | Msa1010800:intron |
| AAGACTTCTGAAAGCAATCC+TGG | 0.415942 | 7_1:+14102667 | None:intergenic |
| CTTTCTGCTTCAGAACTGAT+TGG | 0.421013 | 7_1:+14101622 | None:intergenic |
| TCGAGTTAACAGGACGAGAT+AGG | 0.422142 | 7_1:-14102690 | Msa1010800:CDS |
| ATGTGGTAGCGGCTGAAGTC+TGG | 0.426365 | 7_1:-14102618 | Msa1010800:CDS |
| TCTCTTTACGTGATCTCGTT+AGG | 0.427447 | 7_1:-14100931 | Msa1010800:CDS |
| TTATCTAGGCATGTTTCATT+GGG | 0.431278 | 7_1:-14100700 | Msa1010800:three_prime_UTR |
| CATAGAAAACATTCATGGCT+TGG | 0.432509 | 7_1:+14101083 | None:intergenic |
| TTCATGTTACTGATCAAAAT+GGG | 0.434204 | 7_1:-14103410 | Msa1010800:CDS |
| TACATCACCGACGACACAAC+AGG | 0.443441 | 7_1:-14102565 | Msa1010800:CDS |
| ATTTGGTTGGGAGATAGAAT+TGG | 0.446485 | 7_1:+14104173 | None:intergenic |
| TTAATCTTGGCAAGGCGGTC+AGG | 0.450576 | 7_1:+14102526 | None:intergenic |
| GATCGGAAGCTACGGACTCT+TGG | 0.452011 | 7_1:+14102760 | None:intergenic |
| TGTCACATAGAAAACATTCA+TGG | 0.454766 | 7_1:+14101078 | None:intergenic |
| TGTAGCTGATAGAATTCAAC+AGG | 0.458713 | 7_1:-14103367 | Msa1010800:intron |
| AGATAGAATTGGTGAGATGA+TGG | 0.465467 | 7_1:+14104184 | None:intergenic |
| AGGAACTCTTGACCCTGCTT+AGG | 0.466686 | 7_1:-14104219 | Msa1010800:five_prime_UTR |
| TCAATTGATGTATGCTGATC+GGG | 0.471630 | 7_1:-14102407 | Msa1010800:CDS |
| CGGGATTATGACATATATGA+TGG | 0.473270 | 7_1:-14102388 | Msa1010800:CDS |
| AAGCAGAAGATGCTTAATCT+TGG | 0.477322 | 7_1:+14102513 | None:intergenic |
| ATATTTCATCTGATGGTGGA+TGG | 0.481369 | 7_1:-14103590 | Msa1010800:CDS |
| TAATAAACGTGGTAGTTTGT+TGG | 0.488332 | 7_1:-14103661 | Msa1010800:CDS |
| ATAGAAAACATTCATGGCTT+GGG | 0.492504 | 7_1:+14101084 | None:intergenic |
| GCAAAGAGTAATTCACTGCT+TGG | 0.493494 | 7_1:-14101599 | Msa1010800:CDS |
| GATAGAATTGGTGAGATGAT+GGG | 0.501454 | 7_1:+14104185 | None:intergenic |
| ACATGTTATTGTTACCTTGG+TGG | 0.506079 | 7_1:+14103925 | None:intergenic |
| GTACCTCAGAAGTTCGCCTT+CGG | 0.506198 | 7_1:+14101566 | None:intergenic |
| GAAAATTTAACTGCAAATGT+TGG | 0.508292 | 7_1:-14100578 | Msa1010800:three_prime_UTR |
| ACTCGCATCTTTAGAGAAAA+CGG | 0.512341 | 7_1:-14101145 | Msa1010800:CDS |
| AGAGCTTATATTTCATCTGA+TGG | 0.514352 | 7_1:-14103597 | Msa1010800:CDS |
| TTTGTTCGACTCACAAGGAT+AGG | 0.516487 | 7_1:-14102438 | Msa1010800:CDS |
| ATTGGTGAGATGATGGGGTA+GGG | 0.517260 | 7_1:+14104191 | None:intergenic |
| AGGCTGTTCGAAAAGAGATC+GGG | 0.523994 | 7_1:-14101018 | Msa1010800:CDS |
| GAGGCTGTTCGAAAAGAGAT+CGG | 0.525177 | 7_1:-14101019 | Msa1010800:CDS |
| GATATACCGTCGTGAATTTG+AGG | 0.531940 | 7_1:-14102297 | Msa1010800:CDS |
| GCTTGGAGGCTGCTGTCCGA+AGG | 0.534469 | 7_1:-14101582 | Msa1010800:CDS |
| CGGCAATCCTGTTGTGTCGT+CGG | 0.534641 | 7_1:+14102558 | None:intergenic |
| TGCGAGTTACATCAGACAAA+AGG | 0.535705 | 7_1:+14101161 | None:intergenic |
| TTCTCACGGATCGGAAGCTA+CGG | 0.542549 | 7_1:+14102752 | None:intergenic |
| CTTCAGCATTGACAGTTCCA+TGG | 0.546213 | 7_1:+14102206 | None:intergenic |
| AAGAGTAATTCACTGCTTGG+AGG | 0.549558 | 7_1:-14101596 | Msa1010800:CDS |
| ATAGAATTGGTGAGATGATG+GGG | 0.550082 | 7_1:+14104186 | None:intergenic |
| CGCGCTGAGGTCACGACAAG+AGG | 0.553071 | 7_1:-14101109 | Msa1010800:CDS |
| CCTCAAATGCAATGTGGTAG+CGG | 0.554458 | 7_1:-14102629 | Msa1010800:CDS |
| CAATCAGTTCTGAAGCAGAA+AGG | 0.556036 | 7_1:-14101621 | Msa1010800:CDS |
| TTCTATGTGACAGATGTGTC+CGG | 0.558668 | 7_1:-14101067 | Msa1010800:CDS |
| CATGCTTAAAATCTCCTACC+CGG | 0.562239 | 7_1:-14100967 | Msa1010800:CDS |
| CTGGACACACAATTCAAGAA+TGG | 0.562636 | 7_1:-14102599 | Msa1010800:CDS |
| TTTCAAATTCATCATCAAGA+GGG | 0.563709 | 7_1:+14103968 | None:intergenic |
| ATGCTTAAAATCTCCTACCC+GGG | 0.565650 | 7_1:-14100966 | Msa1010800:CDS |
| AATTGGTGAGATGATGGGGT+AGG | 0.566950 | 7_1:+14104190 | None:intergenic |
| AAGGCCAACTCTGTCTTCAC+CGG | 0.577698 | 7_1:+14101180 | None:intergenic |
| GTTCGACTCACAAGGATAGG+AGG | 0.577855 | 7_1:-14102435 | Msa1010800:CDS |
| AAATCTCCTACCCGGGAGAG+TGG | 0.578530 | 7_1:-14100959 | Msa1010800:CDS |
| GGTAGGGTGGCTCCTAAGCA+GGG | 0.579918 | 7_1:+14104207 | None:intergenic |
| TGTCCGAAGGCGAACTTCTG+AGG | 0.586828 | 7_1:-14101569 | Msa1010800:intron |
| ATCAATTGATGTATGCTGAT+CGG | 0.588153 | 7_1:-14102408 | Msa1010800:CDS |
| ATCTGTCGGTGTTCAAGCTG+CGG | 0.596760 | 7_1:-14102728 | Msa1010800:CDS |
| AGTTAAGAGTGAAACAATTG+AGG | 0.598247 | 7_1:-14101038 | Msa1010800:CDS |
| TATTACATAAGGCATGTGGA+TGG | 0.599573 | 7_1:-14101649 | Msa1010800:CDS |
| TAGATTGTAAAGAAACCTCT+CGG | 0.604791 | 7_1:+14100901 | None:intergenic |
| GGTGAGATGATGGGGTAGGG+TGG | 0.605342 | 7_1:+14104194 | None:intergenic |
| CCTTTCAGTCTGCCGCGCTG+AGG | 0.608957 | 7_1:-14101122 | Msa1010800:CDS |
| CTTTCCGGTGAAGACAGAGT+TGG | 0.609309 | 7_1:-14101184 | Msa1010800:CDS |
| TTAACAGGACGAGATAGGCC+AGG | 0.610170 | 7_1:-14102685 | Msa1010800:CDS |
| CATGGAACTGTCAATGCTGA+AGG | 0.610676 | 7_1:-14102205 | Msa1010800:CDS |
| CGACAGATCTTCTCACGGAT+CGG | 0.618439 | 7_1:+14102743 | None:intergenic |
| GCTTATATTTCATCTGATGG+TGG | 0.619057 | 7_1:-14103594 | Msa1010800:CDS |
| AGGCGGTCAGGATTGTCGAT+CGG | 0.626180 | 7_1:+14102538 | None:intergenic |
| GGAATATTACATAAGGCATG+TGG | 0.628289 | 7_1:-14101653 | Msa1010800:CDS |
| GATGGTGGATGGTTTATGGA+TGG | 0.634152 | 7_1:-14103579 | Msa1010800:intron |
| GAAGATGCTTAATCTTGGCA+AGG | 0.637572 | 7_1:+14102518 | None:intergenic |
| AGTGTTGTGTTGTGTCTCTG+TGG | 0.638496 | 7_1:+14104082 | None:intergenic |
| AACACCGACAGATCTTCTCA+CGG | 0.646279 | 7_1:+14102738 | None:intergenic |
| CGATCCGTGAGAAGATCTGT+CGG | 0.650412 | 7_1:-14102742 | Msa1010800:CDS |
| ACGGTATCGAATAGTAACTT+CGG | 0.652560 | 7_1:+14102262 | None:intergenic |
| CATGTCTGTGATAGTACACA+CGG | 0.656721 | 7_1:+14102243 | None:intergenic |
| CTTCTGCTTTATGTGCTGAG+AGG | 0.660385 | 7_1:-14102499 | Msa1010800:CDS |
| ATGCAGTATGTTGTGTACCA+TGG | 0.674170 | 7_1:-14102223 | Msa1010800:CDS |
| AGACAACAAGTATATGACAC+AGG | 0.684297 | 7_1:+14100659 | None:intergenic |
| GATGCTTAATCTTGGCAAGG+CGG | 0.685591 | 7_1:+14102521 | None:intergenic |
| GTTGATAGTGCTAATAAACG+TGG | 0.727553 | 7_1:-14103672 | Msa1010800:CDS |
| TGCTGACCTCAAATGCAATG+TGG | 0.737650 | 7_1:-14102635 | Msa1010800:CDS |
| TGGACACCTCAAATTCACGA+CGG | 0.751563 | 7_1:+14102291 | None:intergenic |
| TCGTTAGGTCGAGATCCGAG+AGG | 0.772248 | 7_1:-14100916 | Msa1010800:CDS |
| CTCTTGTCGTGACCTCAGCG+CGG | 0.773509 | 7_1:+14101110 | None:intergenic |
| TAATTCGTATGAATCCACCA+AGG | 0.787268 | 7_1:-14103939 | Msa1010800:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATATTAAAAAACACAA+TGG | + | chr7_1:14101302-14101321 | None:intergenic | 10.0% |
| !!! | TTGATATTTTCTTATTTTAT+CGG | - | chr7_1:14101550-14101569 | Msa1010800:intron | 10.0% |
| !!! | TTTGAAATTTAAACCTTATA+AGG | - | chr7_1:14101028-14101047 | Msa1010800:CDS | 15.0% |
| !! | AAATGAAGAATTATTGTAAA+TGG | + | chr7_1:14101258-14101277 | None:intergenic | 15.0% |
| !!! | ATTTGTTATGATTGTAATTT+AGG | - | chr7_1:14101500-14101519 | Msa1010800:intron | 15.0% |
| !!! | AGAATTTTTTTATATCAAGT+AGG | - | chr7_1:14102827-14102846 | Msa1010800:intron | 15.0% |
| !! | TTTCTCTCATTAATTATTTA+CGG | - | chr7_1:14103359-14103378 | Msa1010800:intron | 15.0% |
| !!! | ATTTGTGTTTTTTTTTTTGG+GGG | + | chr7_1:14100658-14100677 | None:intergenic | 20.0% |
| !!! | GATTTGTGTTTTTTTTTTTG+GGG | + | chr7_1:14100659-14100678 | None:intergenic | 20.0% |
| !!! | GGATTTGTGTTTTTTTTTTT+GGG | + | chr7_1:14100660-14100679 | None:intergenic | 20.0% |
| !!! | TTGTATGTTTTTGTATTTTG+TGG | - | chr7_1:14100955-14100974 | Msa1010800:CDS | 20.0% |
| !! | TCAAAGATTATAACCTTATA+AGG | + | chr7_1:14101044-14101063 | None:intergenic | 20.0% |
| !! | AATCTTTGATGAATTTCAAA+AGG | - | chr7_1:14101055-14101074 | Msa1010800:CDS | 20.0% |
| !! | ATCTTTGATGAATTTCAAAA+GGG | - | chr7_1:14101056-14101075 | Msa1010800:CDS | 20.0% |
| !!! | CTTTTATATTGTGGTAAAAT+CGG | + | chr7_1:14101701-14101720 | None:intergenic | 20.0% |
| !! | TAGAGTAATATAAACTATCA+TGG | + | chr7_1:14101741-14101760 | None:intergenic | 20.0% |
| !!! | TCAATTTTCATCATACTATT+TGG | - | chr7_1:14101788-14101807 | Msa1010800:intron | 20.0% |
| !!! | TGTTTACTAATAACACTTTT+TGG | - | chr7_1:14101992-14102011 | Msa1010800:intron | 20.0% |
| !!! | GATATTTTTAAAATACCGTT+CGG | + | chr7_1:14102739-14102758 | None:intergenic | 20.0% |
| !! | AAAATGGATAAAATTAGCAA+AGG | + | chr7_1:14102856-14102875 | None:intergenic | 20.0% |
| !!! | GTATTTCATTTCAATTTGTT+TGG | - | chr7_1:14103025-14103044 | Msa1010800:intron | 20.0% |
| !!! | TTTTACAGGAATATTACATA+AGG | - | chr7_1:14103138-14103157 | Msa1010800:intron | 20.0% |
| !!! | TTTTTTACTTTTGCTAAAAC+AGG | + | chr7_1:14103279-14103298 | None:intergenic | 20.0% |
| !!! | AGTTAACTTGTATTTGATAT+AGG | - | chr7_1:14103577-14103596 | Msa1010800:intron | 20.0% |
| !!! | GTTAACTTGTATTTGATATA+GGG | - | chr7_1:14103578-14103597 | Msa1010800:intron | 20.0% |
| !!! | TTTAGTTTCAACTAGAATTT+AGG | - | chr7_1:14103982-14104001 | Msa1010800:CDS | 20.0% |
| !!! | GGGATTTGTGTTTTTTTTTT+TGG | + | chr7_1:14100661-14100680 | None:intergenic | 25.0% |
| !! | TCTTTGTACCTTTGAAAATT+GGG | + | chr7_1:14100681-14100700 | None:intergenic | 25.0% |
| !! | TTCTTTGTACCTTTGAAAAT+TGG | + | chr7_1:14100682-14100701 | None:intergenic | 25.0% |
| !! | TGTTTCAAACTATGGATTTT+TGG | - | chr7_1:14100796-14100815 | Msa1010800:intron | 25.0% |
| ! | TTTCAAATTCATCATCAAGA+GGG | + | chr7_1:14100833-14100852 | None:intergenic | 25.0% |
| !! | TTTTCAAATTCATCATCAAG+AGG | + | chr7_1:14100834-14100853 | None:intergenic | 25.0% |
| !! | TTTTCATGTGAATTTTGTGT+AGG | - | chr7_1:14101104-14101123 | Msa1010800:CDS | 25.0% |
| ! | GAAGAATTATTGTAAATGGT+AGG | + | chr7_1:14101254-14101273 | None:intergenic | 25.0% |
| ! | TTTCATGTTACTGATCAAAA+TGG | - | chr7_1:14101387-14101406 | Msa1010800:intron | 25.0% |
| ! | TTCATGTTACTGATCAAAAT+GGG | - | chr7_1:14101388-14101407 | Msa1010800:intron | 25.0% |
| ! | TAGATCTGTGTAATATTCAT+CGG | - | chr7_1:14101457-14101476 | Msa1010800:intron | 25.0% |
| !! | TGTGATCAACTTTTATATTG+TGG | + | chr7_1:14101710-14101729 | None:intergenic | 25.0% |
| ! | GTTATTAGTAAACAAAGTTC+TGG | + | chr7_1:14101986-14102005 | None:intergenic | 25.0% |
| ! | TTAGTTACAAACTAGATACA+AGG | - | chr7_1:14102782-14102801 | Msa1010800:intron | 25.0% |
| ! | TTTAATGATAACTTGAGTGA+TGG | + | chr7_1:14103095-14103114 | None:intergenic | 25.0% |
| !! | AAACAGGTATTAATTTGGAA+CGG | + | chr7_1:14103263-14103282 | None:intergenic | 25.0% |
| ! | TGCTAAAACAGGTATTAATT+TGG | + | chr7_1:14103268-14103287 | None:intergenic | 25.0% |
| ! | CTTGCATTTATCAATAAAGA+GGG | - | chr7_1:14103431-14103450 | Msa1010800:intron | 25.0% |
| ! | TACGCAAATATTAAGAAAAG+AGG | + | chr7_1:14103461-14103480 | None:intergenic | 25.0% |
| ! | TTTGTCACTAAAAATACTGA+TGG | + | chr7_1:14103558-14103577 | None:intergenic | 25.0% |
| !!! | TAGATTGTAGAGTTTTATCT+AGG | - | chr7_1:14104084-14104103 | Msa1010800:five_prime_UTR | 25.0% |
| !! | AGAAGCTTATTTCAAACTTT+TGG | + | chr7_1:14104190-14104209 | None:intergenic | 25.0% |
| ! | ACACAAATCCCAATTTTCAA+AGG | - | chr7_1:14100670-14100689 | Msa1010800:three_prime_UTR | 30.0% |
| TTCTGTTCTGTTTCAAACTA+TGG | - | chr7_1:14100788-14100807 | Msa1010800:intron | 30.0% | |
| AGAACATGTTATTGTTACCT+TGG | + | chr7_1:14100879-14100898 | None:intergenic | 30.0% | |
| CAGAACAACAACTTTGATAA+AGG | - | chr7_1:14101005-14101024 | Msa1010800:CDS | 30.0% | |
| ! | TAATAAACGTGGTAGTTTGT+TGG | - | chr7_1:14101137-14101156 | Msa1010800:CDS | 30.0% |
| AGAGCTTATATTTCATCTGA+TGG | - | chr7_1:14101201-14101220 | Msa1010800:CDS | 30.0% | |
| ! | TTTAGTCATTGCCTTTTGAT+TGG | - | chr7_1:14101813-14101832 | Msa1010800:intron | 30.0% |
| ATCATCCTATTCCAATCAAA+AGG | + | chr7_1:14101827-14101846 | None:intergenic | 30.0% | |
| !! | CAAAAAAAAAGCACTAGTTC+TGG | + | chr7_1:14101947-14101966 | None:intergenic | 30.0% |
| !!! | GAACTAGTGCTTTTTTTTTG+AGG | - | chr7_1:14101947-14101966 | Msa1010800:intron | 30.0% |
| ATCAATTGATGTATGCTGAT+CGG | - | chr7_1:14102390-14102409 | Msa1010800:CDS | 30.0% | |
| TCAAATTCGATCATTCTATC+AGG | - | chr7_1:14102892-14102911 | Msa1010800:intron | 30.0% | |
| CAAATTCGATCATTCTATCA+GGG | - | chr7_1:14102893-14102912 | Msa1010800:intron | 30.0% | |
| !!! | TGTGTTTTGCTTTGTTTTAC+AGG | - | chr7_1:14103124-14103143 | Msa1010800:intron | 30.0% |
| GATGTGTTAGAATGATAAAG+CGG | + | chr7_1:14103318-14103337 | None:intergenic | 30.0% | |
| GCTTGCATTTATCAATAAAG+AGG | - | chr7_1:14103430-14103449 | Msa1010800:intron | 30.0% | |
| ATAGAAAACATTCATGGCTT+GGG | + | chr7_1:14103717-14103736 | None:intergenic | 30.0% | |
| TGTCACATAGAAAACATTCA+TGG | + | chr7_1:14103723-14103742 | None:intergenic | 30.0% | |
| TCAATTGTTTCACTCTTAAC+TGG | + | chr7_1:14103761-14103780 | None:intergenic | 30.0% | |
| AGTTAAGAGTGAAACAATTG+AGG | - | chr7_1:14103760-14103779 | Msa1010800:intron | 30.0% | |
| TAGATTGTAAAGAAACCTCT+CGG | + | chr7_1:14103900-14103919 | None:intergenic | 30.0% | |
| CCATAAAATACTACAATGTG+AGG | + | chr7_1:14104019-14104038 | None:intergenic | 30.0% | |
| ! | CCTCACATTGTAGTATTTTA+TGG | - | chr7_1:14104016-14104035 | Msa1010800:five_prime_UTR | 30.0% |
| TTTATCTAGGCATGTTTCAT+TGG | - | chr7_1:14104097-14104116 | Msa1010800:five_prime_UTR | 30.0% | |
| TTATCTAGGCATGTTTCATT+GGG | - | chr7_1:14104098-14104117 | Msa1010800:five_prime_UTR | 30.0% | |
| ATAGAATTGGTGAGATGATG+GGG | + | chr7_1:14100615-14100634 | None:intergenic | 35.0% | |
| GATAGAATTGGTGAGATGAT+GGG | + | chr7_1:14100616-14100635 | None:intergenic | 35.0% | |
| AGATAGAATTGGTGAGATGA+TGG | + | chr7_1:14100617-14100636 | None:intergenic | 35.0% | |
| ATTTGGTTGGGAGATAGAAT+TGG | + | chr7_1:14100628-14100647 | None:intergenic | 35.0% | |
| !!! | GTTTTTTTTTTTGGGGGCTT+TGG | + | chr7_1:14100652-14100671 | None:intergenic | 35.0% |
| !!! | TGTGTGTGTGTGTTTTTTTG+GGG | + | chr7_1:14100756-14100775 | None:intergenic | 35.0% |
| !!! | GTGTGTGTGTGTGTTTTTTT+GGG | + | chr7_1:14100757-14100776 | None:intergenic | 35.0% |
| !!! | TGTGTGTGTGTGTGTTTTTT+TGG | + | chr7_1:14100758-14100777 | None:intergenic | 35.0% |
| TAATTCGTATGAATCCACCA+AGG | - | chr7_1:14100859-14100878 | Msa1010800:exon | 35.0% | |
| ACATGTTATTGTTACCTTGG+TGG | + | chr7_1:14100876-14100895 | None:intergenic | 35.0% | |
| !! | GTTGATAGTGCTAATAAACG+TGG | - | chr7_1:14101126-14101145 | Msa1010800:CDS | 35.0% |
| GCTTATATTTCATCTGATGG+TGG | - | chr7_1:14101204-14101223 | Msa1010800:intron | 35.0% | |
| !! | ATATTTCATCTGATGGTGGA+TGG | - | chr7_1:14101208-14101227 | Msa1010800:intron | 35.0% |
| TGTAGCTGATAGAATTCAAC+AGG | - | chr7_1:14101431-14101450 | Msa1010800:intron | 35.0% | |
| AAGCATATTTCCATGATTCC+CGG | - | chr7_1:14101604-14101623 | Msa1010800:CDS | 35.0% | |
| !! | CATTGCCTTTTGATTGGAAT+AGG | - | chr7_1:14101819-14101838 | Msa1010800:intron | 35.0% |
| AAGCAGAAGATGCTTAATCT+TGG | + | chr7_1:14102288-14102307 | None:intergenic | 35.0% | |
| TCAATTGATGTATGCTGATC+GGG | - | chr7_1:14102391-14102410 | Msa1010800:CDS | 35.0% | |
| CGGGATTATGACATATATGA+TGG | - | chr7_1:14102410-14102429 | Msa1010800:CDS | 35.0% | |
| !! | GTTGATGATTGCATCGATAA+AGG | - | chr7_1:14102479-14102498 | Msa1010800:CDS | 35.0% |
| ! | ACGGTATCGAATAGTAACTT+CGG | + | chr7_1:14102539-14102558 | None:intergenic | 35.0% |
| GTCATTCATGTTCTTGCAAT+TGG | - | chr7_1:14102636-14102655 | Msa1010800:CDS | 35.0% | |
| AGAGAAGCTCAAAATAAGTC+AGG | + | chr7_1:14102693-14102712 | None:intergenic | 35.0% | |
| ! | CGGCTTAACATCTTCTTTTA+AGG | + | chr7_1:14102719-14102738 | None:intergenic | 35.0% |
| AAAGAAGATGTTAAGCCGAA+CGG | - | chr7_1:14102721-14102740 | Msa1010800:CDS | 35.0% | |
| TAGAAAGGATGAGTCAGAAT+AGG | + | chr7_1:14103059-14103078 | None:intergenic | 35.0% | |
| GGAATATTACATAAGGCATG+TGG | - | chr7_1:14103145-14103164 | Msa1010800:intron | 35.0% | |
| TATTACATAAGGCATGTGGA+TGG | - | chr7_1:14103149-14103168 | Msa1010800:intron | 35.0% | |
| ! | AGGTATTAATTTGGAACGGA+GGG | + | chr7_1:14103259-14103278 | None:intergenic | 35.0% |
| ! | ACCTTAAACGACTGTTGATT+TGG | - | chr7_1:14103484-14103503 | Msa1010800:intron | 35.0% |
| TCCAAATCAACAGTCGTTTA+AGG | + | chr7_1:14103488-14103507 | None:intergenic | 35.0% | |
| TGTGAGTACTACATATGACA+TGG | - | chr7_1:14103509-14103528 | Msa1010800:intron | 35.0% | |
| ! | ACTCGCATCTTTAGAGAAAA+CGG | - | chr7_1:14103653-14103672 | Msa1010800:CDS | 35.0% |
| CATAGAAAACATTCATGGCT+TGG | + | chr7_1:14103718-14103737 | None:intergenic | 35.0% | |
| TTCACTCTTAACTGGATTTC+CGG | + | chr7_1:14103753-14103772 | None:intergenic | 35.0% | |
| GAGAGGTTTCTTTACAATCT+AGG | - | chr7_1:14103899-14103918 | Msa1010800:intron | 35.0% | |
| AGACAACAAGTATATGACAC+AGG | + | chr7_1:14104142-14104161 | None:intergenic | 35.0% | |
| !!! | TTTTTGGGGGCTTTGGAATT+TGG | + | chr7_1:14100645-14100664 | None:intergenic | 40.0% |
| ! | ATTTTGTGGCAGAGTAACTG+TGG | - | chr7_1:14100969-14100988 | Msa1010800:CDS | 40.0% |
| !! | ATCTGATGGTGGATGGTTTA+TGG | - | chr7_1:14101215-14101234 | Msa1010800:intron | 40.0% |
| CAGCAATAAATCGGTCTCAA+AGG | - | chr7_1:14101634-14101653 | Msa1010800:CDS | 40.0% | |
| TGTGGTAAAATCGGCAAATG+TGG | + | chr7_1:14101692-14101711 | None:intergenic | 40.0% | |
| ! | GTTTTCTTGTTCCAGTCACT+TGG | - | chr7_1:14102014-14102033 | Msa1010800:intron | 40.0% |
| CATACAACGATCGAGTTAAC+AGG | - | chr7_1:14102098-14102117 | Msa1010800:intron | 40.0% | |
| ! | AAGACTTCTGAAAGCAATCC+TGG | + | chr7_1:14102134-14102153 | None:intergenic | 40.0% |
| CTGGACACACAATTCAAGAA+TGG | - | chr7_1:14102199-14102218 | Msa1010800:CDS | 40.0% | |
| GAAGATGCTTAATCTTGGCA+AGG | + | chr7_1:14102283-14102302 | None:intergenic | 40.0% | |
| !! | TTCGTTTTGTTCGACTCACA+AGG | - | chr7_1:14102355-14102374 | Msa1010800:CDS | 40.0% |
| TTTGTTCGACTCACAAGGAT+AGG | - | chr7_1:14102360-14102379 | Msa1010800:CDS | 40.0% | |
| GATATACCGTCGTGAATTTG+AGG | - | chr7_1:14102501-14102520 | Msa1010800:CDS | 40.0% | |
| AATAGTAACTTCGGTCGATC+TGG | + | chr7_1:14102530-14102549 | None:intergenic | 40.0% | |
| CATGTCTGTGATAGTACACA+CGG | + | chr7_1:14102558-14102577 | None:intergenic | 40.0% | |
| ATGCAGTATGTTGTGTACCA+TGG | - | chr7_1:14102575-14102594 | Msa1010800:CDS | 40.0% | |
| ! | TGAAGGAACAGAAGCATATC+AGG | - | chr7_1:14102610-14102629 | Msa1010800:CDS | 40.0% |
| CTTTCTGCTTCAGAACTGAT+TGG | + | chr7_1:14103179-14103198 | None:intergenic | 40.0% | |
| !! | CAATCAGTTCTGAAGCAGAA+AGG | - | chr7_1:14103177-14103196 | Msa1010800:intron | 40.0% |
| GCAAAGAGTAATTCACTGCT+TGG | - | chr7_1:14103199-14103218 | Msa1010800:intron | 40.0% | |
| AAGAGTAATTCACTGCTTGG+AGG | - | chr7_1:14103202-14103221 | Msa1010800:intron | 40.0% | |
| ! | CAGGTATTAATTTGGAACGG+AGG | + | chr7_1:14103260-14103279 | None:intergenic | 40.0% |
| TGCGAGTTACATCAGACAAA+AGG | + | chr7_1:14103640-14103659 | None:intergenic | 40.0% | |
| TTCTATGTGACAGATGTGTC+CGG | - | chr7_1:14103731-14103750 | Msa1010800:intron | 40.0% | |
| CATGCTTAAAATCTCCTACC+CGG | - | chr7_1:14103831-14103850 | Msa1010800:intron | 40.0% | |
| ATGCTTAAAATCTCCTACCC+GGG | - | chr7_1:14103832-14103851 | Msa1010800:intron | 40.0% | |
| ! | AAGAGAATTTTCCACTCTCC+CGG | + | chr7_1:14103853-14103872 | None:intergenic | 40.0% |
| TCTCTTTACGTGATCTCGTT+AGG | - | chr7_1:14103867-14103886 | Msa1010800:intron | 40.0% | |
| !! | ATTGGTGAGATGATGGGGTA+GGG | + | chr7_1:14100610-14100629 | None:intergenic | 45.0% |
| !! | AATTGGTGAGATGATGGGGT+AGG | + | chr7_1:14100611-14100630 | None:intergenic | 45.0% |
| AGTGTTGTGTTGTGTCTCTG+TGG | + | chr7_1:14100719-14100738 | None:intergenic | 45.0% | |
| !! | GATGGTGGATGGTTTATGGA+TGG | - | chr7_1:14101219-14101238 | Msa1010800:intron | 45.0% |
| CGACATCACAACCACAATTG+CGG | - | chr7_1:14101666-14101685 | Msa1010800:intron | 45.0% | |
| AACACCGACAGATCTTCTCA+CGG | + | chr7_1:14102063-14102082 | None:intergenic | 45.0% | |
| TCGAGTTAACAGGACGAGAT+AGG | - | chr7_1:14102108-14102127 | Msa1010800:intron | 45.0% | |
| TGCTGACCTCAAATGCAATG+TGG | - | chr7_1:14102163-14102182 | Msa1010800:intron | 45.0% | |
| CCTCAAATGCAATGTGGTAG+CGG | - | chr7_1:14102169-14102188 | Msa1010800:intron | 45.0% | |
| GATGCTTAATCTTGGCAAGG+CGG | + | chr7_1:14102280-14102299 | None:intergenic | 45.0% | |
| CTTCTGCTTTATGTGCTGAG+AGG | - | chr7_1:14102299-14102318 | Msa1010800:CDS | 45.0% | |
| TGGACACCTCAAATTCACGA+CGG | + | chr7_1:14102510-14102529 | None:intergenic | 45.0% | |
| !! | CTTCAGCATTGACAGTTCCA+TGG | + | chr7_1:14102595-14102614 | None:intergenic | 45.0% |
| CATGGAACTGTCAATGCTGA+AGG | - | chr7_1:14102593-14102612 | Msa1010800:CDS | 45.0% | |
| GGACTCATAAGCTGGTAGAA+AGG | + | chr7_1:14103074-14103093 | None:intergenic | 45.0% | |
| !! | TGAGTGATGGACTCATAAGC+TGG | + | chr7_1:14103082-14103101 | None:intergenic | 45.0% |
| TGCAAGCTCGATAATGTCGT+TGG | + | chr7_1:14103417-14103436 | None:intergenic | 45.0% | |
| GGTGTAAAGCTCGAACTTTC+CGG | - | chr7_1:14103599-14103618 | Msa1010800:CDS | 45.0% | |
| GAGGCTGTTCGAAAAGAGAT+CGG | - | chr7_1:14103779-14103798 | Msa1010800:intron | 45.0% | |
| AGGCTGTTCGAAAAGAGATC+GGG | - | chr7_1:14103780-14103799 | Msa1010800:intron | 45.0% | |
| ! | CGGGTAGGAGATTTTAAGCA+TGG | + | chr7_1:14103833-14103852 | None:intergenic | 45.0% |
| ! | AGAGAATTTTCCACTCTCCC+GGG | + | chr7_1:14103852-14103871 | None:intergenic | 45.0% |
| !! | GTTAAATATTAATAATAAAA+TGG | + | chr7_1:14102872-14102891 | None:intergenic | 5.0% |
| AGGAACTCTTGACCCTGCTT+AGG | - | chr7_1:14100579-14100598 | Msa1010800:three_prime_UTR | 50.0% | |
| !! | GGGGGCTTTGGAATTTGGTT+GGG | + | chr7_1:14100640-14100659 | None:intergenic | 50.0% |
| !! | TGGGGGCTTTGGAATTTGGT+TGG | + | chr7_1:14100641-14100660 | None:intergenic | 50.0% |
| ! | AGACCGATTTATTGCTGCCG+CGG | + | chr7_1:14101631-14101650 | None:intergenic | 50.0% |
| TTCTCACGGATCGGAAGCTA+CGG | + | chr7_1:14102049-14102068 | None:intergenic | 50.0% | |
| CGACAGATCTTCTCACGGAT+CGG | + | chr7_1:14102058-14102077 | None:intergenic | 50.0% | |
| CGATCCGTGAGAAGATCTGT+CGG | - | chr7_1:14102056-14102075 | Msa1010800:intron | 50.0% | |
| ! | ATCTGTCGGTGTTCAAGCTG+CGG | - | chr7_1:14102070-14102089 | Msa1010800:intron | 50.0% |
| TTAACAGGACGAGATAGGCC+AGG | - | chr7_1:14102113-14102132 | Msa1010800:intron | 50.0% | |
| CCGCTACCACATTGCATTTG+AGG | + | chr7_1:14102172-14102191 | None:intergenic | 50.0% | |
| TACATCACCGACGACACAAC+AGG | - | chr7_1:14102233-14102252 | Msa1010800:CDS | 50.0% | |
| TTAATCTTGGCAAGGCGGTC+AGG | + | chr7_1:14102275-14102294 | None:intergenic | 50.0% | |
| GTTCGACTCACAAGGATAGG+AGG | - | chr7_1:14102363-14102382 | Msa1010800:CDS | 50.0% | |
| GTACCTCAGAAGTTCGCCTT+CGG | + | chr7_1:14103235-14103254 | None:intergenic | 50.0% | |
| CTTTCCGGTGAAGACAGAGT+TGG | - | chr7_1:14103614-14103633 | Msa1010800:CDS | 50.0% | |
| AAGGCCAACTCTGTCTTCAC+CGG | + | chr7_1:14103621-14103640 | None:intergenic | 50.0% | |
| ! | AATTTTCCACTCTCCCGGGT+AGG | + | chr7_1:14103848-14103867 | None:intergenic | 50.0% |
| TTTCCATGATTCCCGGTCCG+CGG | - | chr7_1:14101611-14101630 | Msa1010800:CDS | 55.0% | |
| ATTTATTGCTGCCGCGGACC+GGG | + | chr7_1:14101625-14101644 | None:intergenic | 55.0% | |
| GATTTATTGCTGCCGCGGAC+CGG | + | chr7_1:14101626-14101645 | None:intergenic | 55.0% | |
| GGTCCGCGGCAGCAATAAAT+CGG | - | chr7_1:14101625-14101644 | Msa1010800:CDS | 55.0% | |
| GGCAAATGTGGCCGCAATTG+TGG | + | chr7_1:14101680-14101699 | None:intergenic | 55.0% | |
| GGACTCTTGGACCAAGTGAC+TGG | + | chr7_1:14102028-14102047 | None:intergenic | 55.0% | |
| GATCGGAAGCTACGGACTCT+TGG | + | chr7_1:14102041-14102060 | None:intergenic | 55.0% | |
| !! | ATGTGGTAGCGGCTGAAGTC+TGG | - | chr7_1:14102180-14102199 | Msa1010800:intron | 55.0% |
| CGGCAATCCTGTTGTGTCGT+CGG | + | chr7_1:14102243-14102262 | None:intergenic | 55.0% | |
| AGGCGGTCAGGATTGTCGAT+CGG | + | chr7_1:14102263-14102282 | None:intergenic | 55.0% | |
| TGTCCGAAGGCGAACTTCTG+AGG | - | chr7_1:14103229-14103248 | Msa1010800:intron | 55.0% | |
| AAATCTCCTACCCGGGAGAG+TGG | - | chr7_1:14103839-14103858 | Msa1010800:intron | 55.0% | |
| TCGTTAGGTCGAGATCCGAG+AGG | - | chr7_1:14103882-14103901 | Msa1010800:intron | 55.0% | |
| GGTAGGGTGGCTCCTAAGCA+GGG | + | chr7_1:14100594-14100613 | None:intergenic | 60.0% | |
| !! | GGTGAGATGATGGGGTAGGG+TGG | + | chr7_1:14100607-14100626 | None:intergenic | 60.0% |
| CTCTTGTCGTGACCTCAGCG+CGG | + | chr7_1:14103691-14103710 | None:intergenic | 60.0% | |
| GGGTAGGGTGGCTCCTAAGC+AGG | + | chr7_1:14100595-14100614 | None:intergenic | 65.0% | |
| GCTTGGAGGCTGCTGTCCGA+AGG | - | chr7_1:14103216-14103235 | Msa1010800:intron | 65.0% | |
| CCTCAGCGCGGCAGACTGAA+AGG | + | chr7_1:14103679-14103698 | None:intergenic | 65.0% | |
| CCTTTCAGTCTGCCGCGCTG+AGG | - | chr7_1:14103676-14103695 | Msa1010800:intron | 65.0% | |
| CGCGCTGAGGTCACGACAAG+AGG | - | chr7_1:14103689-14103708 | Msa1010800:intron | 65.0% | |
| CTGCCGCGGACCGGGAATCA+TGG | + | chr7_1:14101617-14101636 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 14100578 | 14104242 | 14100578 | ID=Msa1010800;Name=Msa1010800 |
| chr7_1 | mRNA | 14100578 | 14104242 | 14100578 | ID=Msa1010800-mRNA-1;Parent=Msa1010800;Name=Msa1010800-mRNA-1;_AED=0.13;_eAED=0.13;_QI=229|1|1|1|0.85|0.75|8|255|451 |
| chr7_1 | exon | 14100578 | 14100788 | 14100578 | ID=Msa1010800-mRNA-1:exon:3684;Parent=Msa1010800-mRNA-1 |
| chr7_1 | exon | 14100833 | 14101221 | 14100833 | ID=Msa1010800-mRNA-1:exon:3683;Parent=Msa1010800-mRNA-1 |
| chr7_1 | exon | 14101570 | 14101674 | 14101570 | ID=Msa1010800-mRNA-1:exon:3682;Parent=Msa1010800-mRNA-1 |
| chr7_1 | exon | 14102189 | 14102791 | 14102189 | ID=Msa1010800-mRNA-1:exon:3681;Parent=Msa1010800-mRNA-1 |
| chr7_1 | exon | 14103368 | 14103435 | 14103368 | ID=Msa1010800-mRNA-1:exon:3680;Parent=Msa1010800-mRNA-1 |
| chr7_1 | exon | 14103580 | 14103694 | 14103580 | ID=Msa1010800-mRNA-1:exon:3679;Parent=Msa1010800-mRNA-1 |
| chr7_1 | exon | 14103794 | 14103839 | 14103794 | ID=Msa1010800-mRNA-1:exon:3678;Parent=Msa1010800-mRNA-1 |
| chr7_1 | exon | 14103940 | 14104242 | 14103940 | ID=Msa1010800-mRNA-1:exon:3677;Parent=Msa1010800-mRNA-1 |
| chr7_1 | five_prime_UTR | 14104014 | 14104242 | 14104014 | ID=Msa1010800-mRNA-1:five_prime_utr;Parent=Msa1010800-mRNA-1 |
| chr7_1 | CDS | 14103940 | 14104013 | 14103940 | ID=Msa1010800-mRNA-1:cds;Parent=Msa1010800-mRNA-1 |
| chr7_1 | CDS | 14103794 | 14103839 | 14103794 | ID=Msa1010800-mRNA-1:cds;Parent=Msa1010800-mRNA-1 |
| chr7_1 | CDS | 14103580 | 14103694 | 14103580 | ID=Msa1010800-mRNA-1:cds;Parent=Msa1010800-mRNA-1 |
| chr7_1 | CDS | 14103368 | 14103435 | 14103368 | ID=Msa1010800-mRNA-1:cds;Parent=Msa1010800-mRNA-1 |
| chr7_1 | CDS | 14102189 | 14102791 | 14102189 | ID=Msa1010800-mRNA-1:cds;Parent=Msa1010800-mRNA-1 |
| chr7_1 | CDS | 14101570 | 14101674 | 14101570 | ID=Msa1010800-mRNA-1:cds;Parent=Msa1010800-mRNA-1 |
| chr7_1 | CDS | 14100877 | 14101221 | 14100877 | ID=Msa1010800-mRNA-1:cds;Parent=Msa1010800-mRNA-1 |
| chr7_1 | three_prime_UTR | 14100833 | 14100876 | 14100833 | ID=Msa1010800-mRNA-1:three_prime_utr;Parent=Msa1010800-mRNA-1 |
| chr7_1 | three_prime_UTR | 14100578 | 14100788 | 14100578 | ID=Msa1010800-mRNA-1:three_prime_utr;Parent=Msa1010800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
