Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365440 | XP_003610054.2 | 97.026 | 269 | 5 | 2 | 1 | 268 | 1 | 267 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365440 | sp|Q9LU68|CIA2_ARATH | 43.182 | 308 | 121 | 13 | 1 | 268 | 1 | 294 | 2.70e-35 | 134 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365440 | A0A396IGF5 | 97.026 | 269 | 5 | 2 | 1 | 268 | 1 | 267 | 0.0 | 528 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005690 | Msa1365440 | 0.818150 | 2.277128e-52 | -8.615850e-47 |
| Msa0096510 | Msa1365440 | 0.810302 | 1.233463e-50 | -8.615850e-47 |
| Msa1365440 | Msa1376350 | 0.889242 | 2.887285e-73 | -8.615850e-47 |
| Msa1365440 | Msa1388610 | 0.802492 | 5.469343e-49 | -8.615850e-47 |
| Msa1365440 | Msa1431240 | 0.821362 | 4.203714e-53 | -8.615850e-47 |
| Msa0646340 | Msa1365440 | 0.806652 | 7.414844e-50 | -8.615850e-47 |
| Msa0650360 | Msa1365440 | 0.824317 | 8.617979e-54 | -8.615850e-47 |
| Msa0812280 | Msa1365440 | 0.823170 | 1.599892e-53 | -8.615850e-47 |
| Msa0171920 | Msa1365440 | 0.808510 | 2.989665e-50 | -8.615850e-47 |
| Msa0224370 | Msa1365440 | 0.810841 | 9.430724e-51 | -8.615850e-47 |
| Msa1259470 | Msa1365440 | 0.801093 | 1.059430e-48 | -8.615850e-47 |
| Msa1260760 | Msa1365440 | 0.808249 | 3.397823e-50 | -8.615850e-47 |
| Msa1082150 | Msa1365440 | 0.809563 | 1.778456e-50 | -8.615850e-47 |
| Msa0270840 | Msa1365440 | 0.805665 | 1.196523e-49 | -8.615850e-47 |
| Msa0528740 | Msa1365440 | 0.817456 | 3.266740e-52 | -8.615850e-47 |
| Msa0571250 | Msa1365440 | 0.803971 | 2.701807e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365440 | MtrunA17_Chr4g0071811 | 97.026 | 269 | 5 | 2 | 1 | 268 | 1 | 267 | 0.0 | 528 |
| Msa1365440 | MtrunA17_Chr2g0298711 | 39.357 | 249 | 118 | 8 | 36 | 266 | 43 | 276 | 4.05e-35 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1365440 | AT5G57180.3 | 43.182 | 308 | 121 | 13 | 1 | 268 | 1 | 294 | 1.16e-36 | 134 |
| Msa1365440 | AT5G57180.4 | 43.182 | 308 | 121 | 13 | 1 | 268 | 1 | 294 | 1.16e-36 | 134 |
| Msa1365440 | AT5G57180.1 | 43.182 | 308 | 121 | 13 | 1 | 268 | 1 | 294 | 1.84e-36 | 134 |
| Msa1365440 | AT5G57180.2 | 43.182 | 308 | 121 | 13 | 1 | 268 | 1 | 294 | 2.74e-36 | 134 |
| Msa1365440 | AT4G25990.3 | 40.909 | 264 | 99 | 13 | 1 | 247 | 1 | 224 | 3.98e-30 | 116 |
| Msa1365440 | AT4G25990.1 | 40.909 | 264 | 99 | 13 | 1 | 247 | 1 | 224 | 5.39e-30 | 116 |
| Msa1365440 | AT4G25990.2 | 40.909 | 264 | 99 | 13 | 1 | 247 | 1 | 224 | 5.43e-30 | 116 |
Find 56 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACCGACACTGCATATTT+TGG | 0.094471 | tig0018287:-60951 | None:intergenic |
| TGACATGGTTTCACCGGTTT+TGG | 0.239666 | tig0018287:-60629 | None:intergenic |
| GATTTATTATTGTTATTGTT+GGG | 0.253877 | tig0018287:-60491 | None:intergenic |
| AGCTTCGTTGTAGGTTTGAT+TGG | 0.274583 | tig0018287:-60408 | None:intergenic |
| TCTCATCCATGGATTGGTTT+TGG | 0.279149 | tig0018287:+60797 | Msa1365440:CDS |
| CAATAATAAATCCACCAAAT+TGG | 0.309576 | tig0018287:+60484 | Msa1365440:CDS |
| TTAGGATTGGAGAAGAGGTT+TGG | 0.344819 | tig0018287:-60455 | None:intergenic |
| GGATTTATTATTGTTATTGT+TGG | 0.348745 | tig0018287:-60492 | None:intergenic |
| GTCATGTTGATGAAGGAAAT+TGG | 0.360288 | tig0018287:+60873 | Msa1365440:CDS |
| TCTTCTTCTCATCCATGGAT+TGG | 0.365453 | tig0018287:+60791 | Msa1365440:CDS |
| GGGCTTGCCGTAAAGTAAAA+AGG | 0.371473 | tig0018287:-60591 | None:intergenic |
| GGGAAATTCGACTTCCGGTT+AGG | 0.378755 | tig0018287:+60821 | Msa1365440:CDS |
| AATCATCACCACCATGTTCA+TGG | 0.382343 | tig0018287:+60261 | Msa1365440:CDS |
| GAGTGTTGCAGCTTCGTTGT+AGG | 0.410073 | tig0018287:-60417 | None:intergenic |
| GGTTTGGATATGCAGTGTTA+AGG | 0.417087 | tig0018287:-60439 | None:intergenic |
| TTTGGCTCCGACTGGAAATC+GGG | 0.427983 | tig0018287:-60611 | None:intergenic |
| ATGTCTCTTCTTCTCATCCA+TGG | 0.434935 | tig0018287:+60786 | Msa1365440:CDS |
| TTGGCGGGAAATTCGACTTC+CGG | 0.439230 | tig0018287:+60816 | Msa1365440:CDS |
| GCTTCGTTGTAGGTTTGATT+GGG | 0.439703 | tig0018287:-60407 | None:intergenic |
| CACCTCTCTGTAATCCTAAC+CGG | 0.443822 | tig0018287:-60853 | None:intergenic |
| CACCATTGAACTAATCTCTC+CGG | 0.459584 | tig0018287:-60657 | None:intergenic |
| TGAGATTAGGATTGGAGAAG+AGG | 0.466542 | tig0018287:-60460 | None:intergenic |
| ATTTATTATTGTTATTGTTG+GGG | 0.476105 | tig0018287:-60490 | None:intergenic |
| TTTCCAGTCGGAGCCAAAAC+CGG | 0.481789 | tig0018287:+60598 | Msa1365440:CDS |
| CGGTGGTAAGACGGCGGCGC+CGG | 0.496178 | tig0018287:+60949 | Msa1365440:CDS |
| GGACTCTGACATGGTTTCAC+CGG | 0.498907 | tig0018287:-60635 | None:intergenic |
| ATGCAGTGTCGGTGGTAAGA+CGG | 0.515154 | tig0018287:+60940 | Msa1365440:CDS |
| GATTCAGAGATTGTTGAAGA+AGG | 0.524561 | tig0018287:-60329 | None:intergenic |
| TCCCGGAGAGATTAGTTCAA+TGG | 0.528675 | tig0018287:+60637 | Msa1365440:CDS |
| ACCATTGAACTAATCTCTCC+GGG | 0.545916 | tig0018287:-60656 | None:intergenic |
| AGAAGGAATTGATAGCATCA+TGG | 0.548899 | tig0018287:+60736 | Msa1365440:CDS |
| GAAGGAATTGATAGCATCAT+GGG | 0.550516 | tig0018287:+60737 | Msa1365440:CDS |
| TTCCCGCCAAAACCAATCCA+TGG | 0.558777 | tig0018287:-60821 | None:intergenic |
| CTCGACGAGGAAATTGAAGA+AGG | 0.561335 | tig0018287:+60719 | Msa1365440:CDS |
| GCTCTTCGTCATGTTGATGA+AGG | 0.563499 | tig0018287:+60866 | Msa1365440:CDS |
| GACGTGTCCAATACTCTGAA+AGG | 0.567728 | tig0018287:-60563 | None:intergenic |
| CGGTTAGGATTACAGAGAGG+TGG | 0.569382 | tig0018287:+60836 | Msa1365440:CDS |
| GTGAAACCATGTCAGAGTCC+CGG | 0.575623 | tig0018287:+60620 | Msa1365440:CDS |
| TAAGACGGCGGCGCCGGTGA+CGG | 0.581889 | tig0018287:+60955 | Msa1365440:CDS |
| GGAACAGGAGGAAGAACCAT+CGG | 0.583201 | tig0018287:+60218 | Msa1365440:CDS |
| GAACAGGAGGAAGAACCATC+GGG | 0.586253 | tig0018287:+60219 | Msa1365440:CDS |
| ATCTCTCCGGGACTCTGACA+TGG | 0.592091 | tig0018287:-60644 | None:intergenic |
| AGGAGGAAGAACCATCGGGT+TGG | 0.598540 | tig0018287:+60223 | Msa1365440:CDS |
| CCCAAAATATGCAGTGTCGG+TGG | 0.613838 | tig0018287:+60932 | Msa1365440:CDS |
| CATCATGGGAGGTAGAATTG+AGG | 0.620329 | tig0018287:+60751 | Msa1365440:CDS |
| TCGCCCAAAATATGCAGTGT+CGG | 0.623873 | tig0018287:+60929 | Msa1365440:CDS |
| CGGCAAGCCCGATTTCCAGT+CGG | 0.636352 | tig0018287:+60586 | Msa1365440:CDS |
| TAAATCTAAATCCAACCCGA+TGG | 0.636498 | tig0018287:-60252 | None:intergenic |
| CGCGGAATCAATACTCGACG+AGG | 0.646026 | tig0018287:+60706 | Msa1365440:CDS |
| TTTGTGGTGTAGATTGCAAG+CGG | 0.661097 | tig0018287:-60362 | None:intergenic |
| GATGTTCGACTCCATGAACA+TGG | 0.682341 | tig0018287:-60290 | None:intergenic |
| CAGTGTCGGTGGTAAGACGG+CGG | 0.687348 | tig0018287:+60943 | Msa1365440:CDS |
| GGAATTGATAGCATCATGGG+AGG | 0.697923 | tig0018287:+60740 | Msa1365440:CDS |
| ATGTTGATGAAGGAAATTGG+TGG | 0.716610 | tig0018287:+60876 | Msa1365440:CDS |
| TTCCGGTTAGGATTACAGAG+AGG | 0.750478 | tig0018287:+60833 | Msa1365440:CDS |
| GTTCGACTCCATGAACATGG+TGG | 0.820791 | tig0018287:-60287 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTATTATTGTTATTGTTG+GGG | - | tig0018287:60475-60494 | None:intergenic | 15.0% |
| !!! | GATTTATTATTGTTATTGTT+GGG | - | tig0018287:60476-60495 | None:intergenic | 15.0% |
| !!! | ATTTATTATTGTTATTGTTG+GGG | - | tig0018287:60475-60494 | None:intergenic | 15.0% |
| !!! | GATTTATTATTGTTATTGTT+GGG | - | tig0018287:60476-60495 | None:intergenic | 15.0% |
| !!! | GGATTTATTATTGTTATTGT+TGG | - | tig0018287:60477-60496 | None:intergenic | 20.0% |
| !!! | GGATTTATTATTGTTATTGT+TGG | - | tig0018287:60477-60496 | None:intergenic | 20.0% |
| ! | CAATAATAAATCCACCAAAT+TGG | + | tig0018287:60484-60503 | Msa1365440:CDS | 25.0% |
| !!! | TTCATAAGCTTTTTCCAATT+TGG | - | tig0018287:60501-60520 | None:intergenic | 25.0% |
| !! | TCATCATCCTTTTTACTTTA+CGG | + | tig0018287:60566-60585 | Msa1365440:CDS | 25.0% |
| ! | CAATAATAAATCCACCAAAT+TGG | + | tig0018287:60484-60503 | Msa1365440:CDS | 25.0% |
| !!! | TTCATAAGCTTTTTCCAATT+TGG | - | tig0018287:60501-60520 | None:intergenic | 25.0% |
| !! | TCATCATCCTTTTTACTTTA+CGG | + | tig0018287:60566-60585 | Msa1365440:CDS | 25.0% |
| !!! | GTTTGTTTTGAGATTAGGAT+TGG | - | tig0018287:60453-60472 | None:intergenic | 30.0% |
| !! | ATAAGCTTTTTCCAATTTGG+TGG | - | tig0018287:60498-60517 | None:intergenic | 30.0% |
| ! | TCTTTTACCTTTCAGAGTAT+TGG | + | tig0018287:60538-60557 | Msa1365440:CDS | 30.0% |
| !!! | GTTTGTTTTGAGATTAGGAT+TGG | - | tig0018287:60453-60472 | None:intergenic | 30.0% |
| !! | ATAAGCTTTTTCCAATTTGG+TGG | - | tig0018287:60498-60517 | None:intergenic | 30.0% |
| ! | TCTTTTACCTTTCAGAGTAT+TGG | + | tig0018287:60538-60557 | Msa1365440:CDS | 30.0% |
| TAAATCTAAATCCAACCCGA+TGG | - | tig0018287:60237-60256 | None:intergenic | 35.0% | |
| GATTCAGAGATTGTTGAAGA+AGG | - | tig0018287:60314-60333 | None:intergenic | 35.0% | |
| !! | TTTGATTGGGTCGTTTTCTT+GGG | - | tig0018287:60379-60398 | None:intergenic | 35.0% |
| !!! | TTGGGGTTTGTTTTGAGATT+AGG | - | tig0018287:60458-60477 | None:intergenic | 35.0% |
| !! | TGATGATGATGATTTTGACG+CGG | + | tig0018287:60688-60707 | Msa1365440:CDS | 35.0% |
| ! | AGAAGGAATTGATAGCATCA+TGG | + | tig0018287:60736-60755 | Msa1365440:CDS | 35.0% |
| ! | GAAGGAATTGATAGCATCAT+GGG | + | tig0018287:60737-60756 | Msa1365440:CDS | 35.0% |
| ! | GTCATGTTGATGAAGGAAAT+TGG | + | tig0018287:60873-60892 | Msa1365440:CDS | 35.0% |
| ! | ATGTTGATGAAGGAAATTGG+TGG | + | tig0018287:60876-60895 | Msa1365440:CDS | 35.0% |
| ! | AGGAAATTGGTGGAATTTTC+CGG | + | tig0018287:60886-60905 | Msa1365440:CDS | 35.0% |
| ! | ATTTTAAGCATATCAACCGC+CGG | - | tig0018287:60908-60927 | None:intergenic | 35.0% |
| GGAGAAGAAGAAAAAGAAGA+AGG | + | tig0018287:60976-60995 | Msa1365440:CDS | 35.0% | |
| TAAATCTAAATCCAACCCGA+TGG | - | tig0018287:60237-60256 | None:intergenic | 35.0% | |
| GATTCAGAGATTGTTGAAGA+AGG | - | tig0018287:60314-60333 | None:intergenic | 35.0% | |
| !! | TTTGATTGGGTCGTTTTCTT+GGG | - | tig0018287:60379-60398 | None:intergenic | 35.0% |
| !!! | TTGGGGTTTGTTTTGAGATT+AGG | - | tig0018287:60458-60477 | None:intergenic | 35.0% |
| !! | TGATGATGATGATTTTGACG+CGG | + | tig0018287:60688-60707 | Msa1365440:CDS | 35.0% |
| ! | AGAAGGAATTGATAGCATCA+TGG | + | tig0018287:60736-60755 | Msa1365440:CDS | 35.0% |
| ! | GAAGGAATTGATAGCATCAT+GGG | + | tig0018287:60737-60756 | Msa1365440:CDS | 35.0% |
| ! | GTCATGTTGATGAAGGAAAT+TGG | + | tig0018287:60873-60892 | Msa1365440:CDS | 35.0% |
| ! | ATGTTGATGAAGGAAATTGG+TGG | + | tig0018287:60876-60895 | Msa1365440:CDS | 35.0% |
| ! | AGGAAATTGGTGGAATTTTC+CGG | + | tig0018287:60886-60905 | Msa1365440:CDS | 35.0% |
| ! | ATTTTAAGCATATCAACCGC+CGG | - | tig0018287:60908-60927 | None:intergenic | 35.0% |
| GGAGAAGAAGAAAAAGAAGA+AGG | + | tig0018287:60976-60995 | Msa1365440:CDS | 35.0% | |
| !!! | TCTTCGTGTTTTAGTGGAAC+AGG | + | tig0018287:60203-60222 | Msa1365440:CDS | 40.0% |
| AATCATCACCACCATGTTCA+TGG | + | tig0018287:60261-60280 | Msa1365440:CDS | 40.0% | |
| TTTGTGGTGTAGATTGCAAG+CGG | - | tig0018287:60347-60366 | None:intergenic | 40.0% | |
| !! | TTGATTGGGTCGTTTTCTTG+GGG | - | tig0018287:60378-60397 | None:intergenic | 40.0% |
| !! | GTTTGATTGGGTCGTTTTCT+TGG | - | tig0018287:60380-60399 | None:intergenic | 40.0% |
| GCTTCGTTGTAGGTTTGATT+GGG | - | tig0018287:60392-60411 | None:intergenic | 40.0% | |
| AGCTTCGTTGTAGGTTTGAT+TGG | - | tig0018287:60393-60412 | None:intergenic | 40.0% | |
| GGTTTGGATATGCAGTGTTA+AGG | - | tig0018287:60424-60443 | None:intergenic | 40.0% | |
| TTAGGATTGGAGAAGAGGTT+TGG | - | tig0018287:60440-60459 | None:intergenic | 40.0% | |
| TGAGATTAGGATTGGAGAAG+AGG | - | tig0018287:60445-60464 | None:intergenic | 40.0% | |
| ACCATTGAACTAATCTCTCC+GGG | - | tig0018287:60641-60660 | None:intergenic | 40.0% | |
| CACCATTGAACTAATCTCTC+CGG | - | tig0018287:60642-60661 | None:intergenic | 40.0% | |
| ATGTCTCTTCTTCTCATCCA+TGG | + | tig0018287:60786-60805 | Msa1365440:CDS | 40.0% | |
| TCTTCTTCTCATCCATGGAT+TGG | + | tig0018287:60791-60810 | Msa1365440:CDS | 40.0% | |
| !!! | TCTCATCCATGGATTGGTTT+TGG | + | tig0018287:60797-60816 | Msa1365440:CDS | 40.0% |
| ! | AAATTGGTGGAATTTTCCGG+CGG | + | tig0018287:60889-60908 | Msa1365440:CDS | 40.0% |
| ! | TTTTTCTTCTTCTCCGTCAC+CGG | - | tig0018287:60971-60990 | None:intergenic | 40.0% |
| !!! | TCTTCGTGTTTTAGTGGAAC+AGG | + | tig0018287:60203-60222 | Msa1365440:CDS | 40.0% |
| AATCATCACCACCATGTTCA+TGG | + | tig0018287:60261-60280 | Msa1365440:CDS | 40.0% | |
| TTTGTGGTGTAGATTGCAAG+CGG | - | tig0018287:60347-60366 | None:intergenic | 40.0% | |
| !! | TTGATTGGGTCGTTTTCTTG+GGG | - | tig0018287:60378-60397 | None:intergenic | 40.0% |
| !! | GTTTGATTGGGTCGTTTTCT+TGG | - | tig0018287:60380-60399 | None:intergenic | 40.0% |
| GCTTCGTTGTAGGTTTGATT+GGG | - | tig0018287:60392-60411 | None:intergenic | 40.0% | |
| AGCTTCGTTGTAGGTTTGAT+TGG | - | tig0018287:60393-60412 | None:intergenic | 40.0% | |
| GGTTTGGATATGCAGTGTTA+AGG | - | tig0018287:60424-60443 | None:intergenic | 40.0% | |
| TTAGGATTGGAGAAGAGGTT+TGG | - | tig0018287:60440-60459 | None:intergenic | 40.0% | |
| TGAGATTAGGATTGGAGAAG+AGG | - | tig0018287:60445-60464 | None:intergenic | 40.0% | |
| ACCATTGAACTAATCTCTCC+GGG | - | tig0018287:60641-60660 | None:intergenic | 40.0% | |
| CACCATTGAACTAATCTCTC+CGG | - | tig0018287:60642-60661 | None:intergenic | 40.0% | |
| ATGTCTCTTCTTCTCATCCA+TGG | + | tig0018287:60786-60805 | Msa1365440:CDS | 40.0% | |
| TCTTCTTCTCATCCATGGAT+TGG | + | tig0018287:60791-60810 | Msa1365440:CDS | 40.0% | |
| !!! | TCTCATCCATGGATTGGTTT+TGG | + | tig0018287:60797-60816 | Msa1365440:CDS | 40.0% |
| ! | AAATTGGTGGAATTTTCCGG+CGG | + | tig0018287:60889-60908 | Msa1365440:CDS | 40.0% |
| ! | TTTTTCTTCTTCTCCGTCAC+CGG | - | tig0018287:60971-60990 | None:intergenic | 40.0% |
| !!! | TCGTGTTTTAGTGGAACAGG+AGG | + | tig0018287:60206-60225 | Msa1365440:CDS | 45.0% |
| GATGTTCGACTCCATGAACA+TGG | - | tig0018287:60275-60294 | None:intergenic | 45.0% | |
| GACGTGTCCAATACTCTGAA+AGG | - | tig0018287:60548-60567 | None:intergenic | 45.0% | |
| GGGCTTGCCGTAAAGTAAAA+AGG | - | tig0018287:60576-60595 | None:intergenic | 45.0% | |
| !!! | TTTTGGCTCCGACTGGAAAT+CGG | - | tig0018287:60597-60616 | None:intergenic | 45.0% |
| !!! | TGACATGGTTTCACCGGTTT+TGG | - | tig0018287:60614-60633 | None:intergenic | 45.0% |
| ! | TCCCGGAGAGATTAGTTCAA+TGG | + | tig0018287:60637-60656 | Msa1365440:CDS | 45.0% |
| CTCGACGAGGAAATTGAAGA+AGG | + | tig0018287:60719-60738 | Msa1365440:CDS | 45.0% | |
| ! | GGAATTGATAGCATCATGGG+AGG | + | tig0018287:60740-60759 | Msa1365440:CDS | 45.0% |
| CATCATGGGAGGTAGAATTG+AGG | + | tig0018287:60751-60770 | Msa1365440:CDS | 45.0% | |
| !!! | CATCCATGGATTGGTTTTGG+CGG | + | tig0018287:60800-60819 | Msa1365440:CDS | 45.0% |
| !!! | ATCCATGGATTGGTTTTGGC+GGG | + | tig0018287:60801-60820 | Msa1365440:CDS | 45.0% |
| TTCCGGTTAGGATTACAGAG+AGG | + | tig0018287:60833-60852 | Msa1365440:CDS | 45.0% | |
| CACCTCTCTGTAATCCTAAC+CGG | - | tig0018287:60838-60857 | None:intergenic | 45.0% | |
| ! | GCTCTTCGTCATGTTGATGA+AGG | + | tig0018287:60866-60885 | Msa1365440:CDS | 45.0% |
| TCGCCCAAAATATGCAGTGT+CGG | + | tig0018287:60929-60948 | Msa1365440:CDS | 45.0% | |
| ! | CCACCGACACTGCATATTTT+GGG | - | tig0018287:60935-60954 | None:intergenic | 45.0% |
| ! | ACCACCGACACTGCATATTT+TGG | - | tig0018287:60936-60955 | None:intergenic | 45.0% |
| !!! | TCGTGTTTTAGTGGAACAGG+AGG | + | tig0018287:60206-60225 | Msa1365440:CDS | 45.0% |
| GATGTTCGACTCCATGAACA+TGG | - | tig0018287:60275-60294 | None:intergenic | 45.0% | |
| GACGTGTCCAATACTCTGAA+AGG | - | tig0018287:60548-60567 | None:intergenic | 45.0% | |
| GGGCTTGCCGTAAAGTAAAA+AGG | - | tig0018287:60576-60595 | None:intergenic | 45.0% | |
| !!! | TTTTGGCTCCGACTGGAAAT+CGG | - | tig0018287:60597-60616 | None:intergenic | 45.0% |
| !!! | TGACATGGTTTCACCGGTTT+TGG | - | tig0018287:60614-60633 | None:intergenic | 45.0% |
| ! | TCCCGGAGAGATTAGTTCAA+TGG | + | tig0018287:60637-60656 | Msa1365440:CDS | 45.0% |
| CTCGACGAGGAAATTGAAGA+AGG | + | tig0018287:60719-60738 | Msa1365440:CDS | 45.0% | |
| ! | GGAATTGATAGCATCATGGG+AGG | + | tig0018287:60740-60759 | Msa1365440:CDS | 45.0% |
| CATCATGGGAGGTAGAATTG+AGG | + | tig0018287:60751-60770 | Msa1365440:CDS | 45.0% | |
| !!! | CATCCATGGATTGGTTTTGG+CGG | + | tig0018287:60800-60819 | Msa1365440:CDS | 45.0% |
| !!! | ATCCATGGATTGGTTTTGGC+GGG | + | tig0018287:60801-60820 | Msa1365440:CDS | 45.0% |
| TTCCGGTTAGGATTACAGAG+AGG | + | tig0018287:60833-60852 | Msa1365440:CDS | 45.0% | |
| CACCTCTCTGTAATCCTAAC+CGG | - | tig0018287:60838-60857 | None:intergenic | 45.0% | |
| ! | GCTCTTCGTCATGTTGATGA+AGG | + | tig0018287:60866-60885 | Msa1365440:CDS | 45.0% |
| TCGCCCAAAATATGCAGTGT+CGG | + | tig0018287:60929-60948 | Msa1365440:CDS | 45.0% | |
| ! | CCACCGACACTGCATATTTT+GGG | - | tig0018287:60935-60954 | None:intergenic | 45.0% |
| ! | ACCACCGACACTGCATATTT+TGG | - | tig0018287:60936-60955 | None:intergenic | 45.0% |
| GGAACAGGAGGAAGAACCAT+CGG | + | tig0018287:60218-60237 | Msa1365440:CDS | 50.0% | |
| GAACAGGAGGAAGAACCATC+GGG | + | tig0018287:60219-60238 | Msa1365440:CDS | 50.0% | |
| GTTCGACTCCATGAACATGG+TGG | - | tig0018287:60272-60291 | None:intergenic | 50.0% | |
| !!! | TCTTGGGGTTCTGGGTTTTG+TGG | - | tig0018287:60363-60382 | None:intergenic | 50.0% |
| !! | GGTCGTTTTCTTGGGGTTCT+GGG | - | tig0018287:60371-60390 | None:intergenic | 50.0% |
| ! | GAGTGTTGCAGCTTCGTTGT+AGG | - | tig0018287:60402-60421 | None:intergenic | 50.0% |
| ! | TTTGGCTCCGACTGGAAATC+GGG | - | tig0018287:60596-60615 | None:intergenic | 50.0% |
| TTTCCAGTCGGAGCCAAAAC+CGG | + | tig0018287:60598-60617 | Msa1365440:CDS | 50.0% | |
| GGACTCTGACATGGTTTCAC+CGG | - | tig0018287:60620-60639 | None:intergenic | 50.0% | |
| GTGAAACCATGTCAGAGTCC+CGG | + | tig0018287:60620-60639 | Msa1365440:CDS | 50.0% | |
| TTCCCGCCAAAACCAATCCA+TGG | - | tig0018287:60806-60825 | None:intergenic | 50.0% | |
| TTGGCGGGAAATTCGACTTC+CGG | + | tig0018287:60816-60835 | Msa1365440:CDS | 50.0% | |
| GGGAAATTCGACTTCCGGTT+AGG | + | tig0018287:60821-60840 | Msa1365440:CDS | 50.0% | |
| CGGTTAGGATTACAGAGAGG+TGG | + | tig0018287:60836-60855 | Msa1365440:CDS | 50.0% | |
| ! | CCCAAAATATGCAGTGTCGG+TGG | + | tig0018287:60932-60951 | Msa1365440:CDS | 50.0% |
| !! | ATGCAGTGTCGGTGGTAAGA+CGG | + | tig0018287:60940-60959 | Msa1365440:CDS | 50.0% |
| GGAACAGGAGGAAGAACCAT+CGG | + | tig0018287:60218-60237 | Msa1365440:CDS | 50.0% | |
| GAACAGGAGGAAGAACCATC+GGG | + | tig0018287:60219-60238 | Msa1365440:CDS | 50.0% | |
| GTTCGACTCCATGAACATGG+TGG | - | tig0018287:60272-60291 | None:intergenic | 50.0% | |
| !!! | TCTTGGGGTTCTGGGTTTTG+TGG | - | tig0018287:60363-60382 | None:intergenic | 50.0% |
| !! | GGTCGTTTTCTTGGGGTTCT+GGG | - | tig0018287:60371-60390 | None:intergenic | 50.0% |
| ! | GAGTGTTGCAGCTTCGTTGT+AGG | - | tig0018287:60402-60421 | None:intergenic | 50.0% |
| ! | TTTGGCTCCGACTGGAAATC+GGG | - | tig0018287:60596-60615 | None:intergenic | 50.0% |
| TTTCCAGTCGGAGCCAAAAC+CGG | + | tig0018287:60598-60617 | Msa1365440:CDS | 50.0% | |
| GGACTCTGACATGGTTTCAC+CGG | - | tig0018287:60620-60639 | None:intergenic | 50.0% | |
| GTGAAACCATGTCAGAGTCC+CGG | + | tig0018287:60620-60639 | Msa1365440:CDS | 50.0% | |
| TTCCCGCCAAAACCAATCCA+TGG | - | tig0018287:60806-60825 | None:intergenic | 50.0% | |
| TTGGCGGGAAATTCGACTTC+CGG | + | tig0018287:60816-60835 | Msa1365440:CDS | 50.0% | |
| GGGAAATTCGACTTCCGGTT+AGG | + | tig0018287:60821-60840 | Msa1365440:CDS | 50.0% | |
| CGGTTAGGATTACAGAGAGG+TGG | + | tig0018287:60836-60855 | Msa1365440:CDS | 50.0% | |
| ! | CCCAAAATATGCAGTGTCGG+TGG | + | tig0018287:60932-60951 | Msa1365440:CDS | 50.0% |
| !! | ATGCAGTGTCGGTGGTAAGA+CGG | + | tig0018287:60940-60959 | Msa1365440:CDS | 50.0% |
| AGGAGGAAGAACCATCGGGT+TGG | + | tig0018287:60223-60242 | Msa1365440:CDS | 55.0% | |
| !! | GGGTCGTTTTCTTGGGGTTC+TGG | - | tig0018287:60372-60391 | None:intergenic | 55.0% |
| ATCTCTCCGGGACTCTGACA+TGG | - | tig0018287:60629-60648 | None:intergenic | 55.0% | |
| CGCGGAATCAATACTCGACG+AGG | + | tig0018287:60706-60725 | Msa1365440:CDS | 55.0% | |
| AGGAGGAAGAACCATCGGGT+TGG | + | tig0018287:60223-60242 | Msa1365440:CDS | 55.0% | |
| !! | GGGTCGTTTTCTTGGGGTTC+TGG | - | tig0018287:60372-60391 | None:intergenic | 55.0% |
| ATCTCTCCGGGACTCTGACA+TGG | - | tig0018287:60629-60648 | None:intergenic | 55.0% | |
| CGCGGAATCAATACTCGACG+AGG | + | tig0018287:60706-60725 | Msa1365440:CDS | 55.0% | |
| CGGCAAGCCCGATTTCCAGT+CGG | + | tig0018287:60586-60605 | Msa1365440:CDS | 60.0% | |
| !!! | TCACCGGTTTTGGCTCCGAC+TGG | - | tig0018287:60604-60623 | None:intergenic | 60.0% |
| !! | CAGTGTCGGTGGTAAGACGG+CGG | + | tig0018287:60943-60962 | Msa1365440:CDS | 60.0% |
| CGGCAAGCCCGATTTCCAGT+CGG | + | tig0018287:60586-60605 | Msa1365440:CDS | 60.0% | |
| !!! | TCACCGGTTTTGGCTCCGAC+TGG | - | tig0018287:60604-60623 | None:intergenic | 60.0% |
| !! | CAGTGTCGGTGGTAAGACGG+CGG | + | tig0018287:60943-60962 | Msa1365440:CDS | 60.0% |
| !! | TAAGACGGCGGCGCCGGTGA+CGG | + | tig0018287:60955-60974 | Msa1365440:CDS | 70.0% |
| !! | TAAGACGGCGGCGCCGGTGA+CGG | + | tig0018287:60955-60974 | Msa1365440:CDS | 70.0% |
| CGGTGGTAAGACGGCGGCGC+CGG | + | tig0018287:60949-60968 | Msa1365440:CDS | 75.0% | |
| CGGTGGTAAGACGGCGGCGC+CGG | + | tig0018287:60949-60968 | Msa1365440:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018287 | gene | 60200 | 61003 | 60200 | ID=Msa1365440;Name=Msa1365440 |
| tig0018287 | mRNA | 60200 | 61003 | 60200 | ID=Msa1365440-mRNA-1;Parent=Msa1365440;Name=Msa1365440-mRNA-1;_AED=0.00;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|268 |
| tig0018287 | exon | 60200 | 61003 | 60200 | ID=Msa1365440-mRNA-1:exon:14550;Parent=Msa1365440-mRNA-1 |
| tig0018287 | CDS | 60200 | 61003 | 60200 | ID=Msa1365440-mRNA-1:cds;Parent=Msa1365440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
