AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0646340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646340 MtrunA17_Chr4g0034481 96.539 549 17 2 1 548 1 548 0.0 1090
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646340 AT1G49380.1 67.096 544 168 4 11 544 5 547 0.0 754

Find 144 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACACCATAAGGACCTTTC+TGG 0.163357 4_3:-52071097 None:intergenic
CTTGCAATGTTGGCCCTTCT+TGG 0.176283 4_3:+52072473 Msa0646340:CDS
TGAATAGTATCTTTGCTATT+TGG 0.190042 4_3:+52075195 Msa0646340:three_prime_UTR
GACATTAGAGCTTTGGTATC+TGG 0.206322 4_3:-52075159 None:intergenic
GATGATGATTCAACTATTTC+AGG 0.215636 4_3:-52074869 None:intergenic
CAGAGCTAAGTTAGAGTTTC+CGG 0.217680 4_3:+52074817 Msa0646340:CDS
AGTGCTGCAGGGAGCTTTAA+AGG 0.217791 4_3:+52073018 Msa0646340:CDS
TTCTGGTTCTTTGAGCTTGC+TGG 0.229099 4_3:-52071080 None:intergenic
AATGGAGATAAGAAACTTTA+TGG 0.238655 4_3:+52073545 Msa0646340:CDS
TCTAATTTGCCTATGGCTAT+TGG 0.254141 4_3:+52071155 Msa0646340:CDS
GTTAACTCTCCTGATGTTAA+AGG 0.262581 4_3:+52073590 Msa0646340:CDS
ATTGGATGGGTGCATATATA+TGG 0.265939 4_3:+52074973 Msa0646340:three_prime_UTR
GATGATCTTCGGGGTAATTC+TGG 0.271782 4_3:-52072376 None:intergenic
CAACTGCAAACTGTACATTA+TGG 0.274979 4_3:-52075223 None:intergenic
TTATCTCCATTGATCTTTAG+AGG 0.290427 4_3:-52073533 None:intergenic
CGACATACAAACATACAAAT+TGG 0.290587 4_3:+52075021 Msa0646340:three_prime_UTR
GTGATACCATCATATCTTAA+AGG 0.306162 4_3:-52073431 None:intergenic
AAGATGATCTGCAAAAGTTT+TGG 0.309305 4_3:-52075065 None:intergenic
ATTTCCCTTCCTTATCATAA+AGG 0.309945 4_3:-52074229 None:intergenic
ACTCCAATCCGTCTGGTATA+TGG 0.313882 4_3:-52073453 None:intergenic
CACTCATCAAGGTTTCAAAA+AGG 0.314179 4_3:+52072534 Msa0646340:CDS
TTGAGAAGACATTGATTCAT+AGG 0.322099 4_3:-52070861 None:intergenic
AGATGTCGGTACTATATTAA+TGG 0.328637 4_3:+52072716 Msa0646340:CDS
TCATGTCAACAGATTCTCTA+TGG 0.335451 4_3:+52073140 Msa0646340:CDS
CAGTTTCAGTTTCCAGTTTG+AGG 0.335650 4_3:-52070795 None:intergenic
GATGGCACAACAGTCGTTAT+TGG 0.338022 4_3:+52074782 Msa0646340:CDS
GATAAGGAAGGGAAATTTGC+AGG 0.341411 4_3:+52074236 Msa0646340:CDS
TATAGCACTGCTGTTGATAA+TGG 0.346092 4_3:+52072981 Msa0646340:CDS
CCTAACACAGGATGATCTTC+GGG 0.348301 4_3:-52072386 None:intergenic
TTGATTGGGAGCTTTGAATT+AGG 0.356379 4_3:-52074269 None:intergenic
TCCTATATTTCTTGCAATGT+TGG 0.358616 4_3:+52072463 Msa0646340:CDS
TTGTGTAAGTGCAGGCAATA+AGG 0.379774 4_3:-52072502 None:intergenic
GTCAATTGTCCTTTATGATA+AGG 0.380317 4_3:+52074220 Msa0646340:CDS
AGGTTCAGTCACTGTGCCTC+AGG 0.385654 4_3:+52073038 Msa0646340:CDS
CCCGAAGATCATCCTGTGTT+AGG 0.385736 4_3:+52072386 Msa0646340:CDS
TCTGAGCCGTCAATGTTGAT+TGG 0.394000 4_3:-52074284 None:intergenic
TTTGAGATTGCAGCAGTTGA+TGG 0.394171 4_3:-52070952 None:intergenic
CTGAGCCGTCAATGTTGATT+GGG 0.396472 4_3:-52074283 None:intergenic
AGTTTCAGTTTCCAGTTTGA+GGG 0.403729 4_3:-52070794 None:intergenic
GGTCAAGAAGTTGAGTAAAA+AGG 0.404743 4_3:+52071118 Msa0646340:CDS
GATGTCGGTACTATATTAAT+GGG 0.410352 4_3:+52072717 Msa0646340:CDS
CAGTAGTGGCTTGGACTTGA+AGG 0.414087 4_3:+52074331 Msa0646340:CDS
GATACAAGACATTAGAGCTT+TGG 0.414264 4_3:-52075166 None:intergenic
GCTGACACAGTCCCTCAAAC+TGG 0.415405 4_3:+52070783 None:intergenic
TTAATATAGTACCGACATCT+TGG 0.419377 4_3:-52072713 None:intergenic
GAATTAAAAGACTCTTCAAT+TGG 0.421415 4_3:+52074955 Msa0646340:three_prime_UTR
TCCTAACACAGGATGATCTT+CGG 0.422726 4_3:-52072387 None:intergenic
AAAACTCAGGTTTCTCGCCT+TGG 0.423189 4_3:-52072349 None:intergenic
GGTGCCATAGCCAAGTTATA+AGG 0.424092 4_3:-52073512 None:intergenic
AAGAACCAGAAAGGTCCTTA+TGG 0.425770 4_3:+52071092 Msa0646340:CDS
TAAAAGACTCTTCAATTGGA+TGG 0.434086 4_3:+52074959 Msa0646340:three_prime_UTR
GACTGTTGTGCCATCTTGTA+AGG 0.442534 4_3:-52074774 None:intergenic
TGATACCATCATATCTTAAA+GGG 0.444057 4_3:-52073430 None:intergenic
CCAGTTGTATATGCTGGATT+TGG 0.446587 4_3:+52074464 Msa0646340:CDS
ATTGTCGTTGTGGATGCAAT+AGG 0.449874 4_3:+52074308 Msa0646340:CDS
GCCAACATTGCAAGAAATAT+AGG 0.450820 4_3:-52072464 None:intergenic
GATTCTCTCTAATTTGCCTA+TGG 0.458375 4_3:+52071148 Msa0646340:CDS
AGCAAGAGGTTCATCTCGTC+CGG 0.469158 4_3:-52074836 None:intergenic
TGCAATAGGCAGTAGTGGCT+TGG 0.469467 4_3:+52074322 Msa0646340:CDS
GGAGGAACTTTAAGTGCTGC+AGG 0.471844 4_3:+52073006 Msa0646340:CDS
ACTTACATTCCTTTAACATC+AGG 0.476122 4_3:-52073599 None:intergenic
AACTTCTTGACCACACCATA+AGG 0.476566 4_3:-52071107 None:intergenic
TCTATGGATTATTATGAAAG+TGG 0.477182 4_3:+52073156 Msa0646340:CDS
CGATCTTTCCCTCTTGAACA+TGG 0.481054 4_3:+52073367 Msa0646340:CDS
CTTTCCCTCTTGAACATGGA+TGG 0.481191 4_3:+52073371 Msa0646340:CDS
TTTGAACAAGGGATGAAAAG+TGG 0.482240 4_3:-52070889 None:intergenic
ATGATGATTCAACTATTTCA+GGG 0.487321 4_3:-52074868 None:intergenic
AGTGCTATATGAACGCCAAC+AGG 0.487373 4_3:-52072967 None:intergenic
TTCTCCTGTGTGAGTGGTGG+AGG 0.491970 4_3:-52071032 None:intergenic
ACATCTTGGATTGATGCTCT+TGG 0.492453 4_3:-52072699 None:intergenic
AACATACAAATTGGATGCGA+TGG 0.492806 4_3:+52075030 Msa0646340:three_prime_UTR
CCAAATCCAGCATATACAAC+TGG 0.494043 4_3:-52074464 None:intergenic
CTGAAATACTCCAATCCGTC+TGG 0.496597 4_3:-52073460 None:intergenic
TATGTTATGCAGACTGATCC+TGG 0.497099 4_3:+52074437 Msa0646340:intron
GCATATACAACTGGCACGCC+AGG 0.499803 4_3:-52074455 None:intergenic
CAGCTATTTATCTCATTCAC+AGG 0.500481 4_3:+52074511 Msa0646340:CDS
TCTGTATTAAAAGCATCAGT+TGG 0.502693 4_3:-52073114 None:intergenic
CAATGAAGGACCTTATAACT+TGG 0.502844 4_3:+52073502 Msa0646340:CDS
TTTGTTGTAGGAGACGTTCT+CGG 0.507703 4_3:+52073069 Msa0646340:CDS
ATAGCACTGCTGTTGATAAT+GGG 0.512040 4_3:+52072982 Msa0646340:CDS
AAGCTCCCAATCAACATTGA+CGG 0.512647 4_3:+52074278 Msa0646340:CDS
ATTAATGGGAGCTGGATATG+AGG 0.517838 4_3:+52072731 Msa0646340:CDS
CTATGGATTATTATGAAAGT+GGG 0.518677 4_3:+52073157 Msa0646340:CDS
AAAAGACTCTTCAATTGGAT+GGG 0.519527 4_3:+52074960 Msa0646340:three_prime_UTR
GGCGTGCCAGTTGTATATGC+TGG 0.520966 4_3:+52074458 Msa0646340:CDS
ATTGTCCTTTATGATAAGGA+AGG 0.526577 4_3:+52074224 Msa0646340:CDS
CAAATTCTCAAGGACAATGA+AGG 0.527947 4_3:+52073488 Msa0646340:CDS
ATGGCACCTCTAAAGATCAA+TGG 0.528038 4_3:+52073527 Msa0646340:CDS
CAATAAGGGATGCACCAAGA+AGG 0.534856 4_3:-52072487 None:intergenic
GGTACTATATTAATGGGAGC+TGG 0.536365 4_3:+52072723 Msa0646340:CDS
TCACCATATACCAGACGGAT+TGG 0.537124 4_3:+52073450 Msa0646340:CDS
TTCAGCTCTGCAAATTCTCA+AGG 0.537400 4_3:+52073478 Msa0646340:CDS
TGTGTCACATGATGTCTTTG+AGG 0.540282 4_3:+52070835 Msa0646340:CDS
AACGACCCTTTAAGATATGA+TGG 0.540927 4_3:+52073425 Msa0646340:CDS
AACACAACTCCCACTCATCA+AGG 0.543840 4_3:+52072523 Msa0646340:CDS
GGTTCAGTCACTGTGCCTCA+GGG 0.545272 4_3:+52073039 Msa0646340:CDS
GCCGGTCGGCTAGCTCCTGT+TGG 0.547932 4_3:+52072952 Msa0646340:CDS
CCGCGAAAAGCATACAAAGT+TGG 0.554026 4_3:-52072925 None:intergenic
GTCATTTATGCACTCTGCCG+AGG 0.555645 4_3:+52072644 Msa0646340:CDS
TTGAACAAGGGATGAAAAGT+GGG 0.557949 4_3:-52070888 None:intergenic
ATTAAAAGCATCAGTTGGAA+AGG 0.559039 4_3:-52073109 None:intergenic
ATCTAAGCAAACTGATAGCA+TGG 0.559854 4_3:+52074895 Msa0646340:CDS
AATAAGGGATGCACCAAGAA+GGG 0.561371 4_3:-52072486 None:intergenic
GGAGAGTTAACATCTCCAAC+CGG 0.566287 4_3:-52073578 None:intergenic
TGTGTAAGTGCAGGCAATAA+GGG 0.570286 4_3:-52072501 None:intergenic
GCCAACAGGAGCTAGCCGAC+CGG 0.571087 4_3:-52072953 None:intergenic
CATAAAGGACAATTGACTGC+AGG 0.571577 4_3:-52074214 None:intergenic
CATGTTCAAGAGGGAAAGAT+CGG 0.573438 4_3:-52073366 None:intergenic
TTGTCCTTTATGATAAGGAA+GGG 0.575204 4_3:+52074225 Msa0646340:CDS
GGAGACGTTCTCGGTCCTAC+CGG 0.575828 4_3:+52073078 Msa0646340:CDS
GGCACAACAGTCGTTATTGG+AGG 0.576659 4_3:+52074785 Msa0646340:CDS
GCAAGCTCAAAGAACCAGAA+AGG 0.582871 4_3:+52071083 Msa0646340:CDS
AGTTCTGTTGAATTTGAACA+AGG 0.583852 4_3:-52070901 None:intergenic
TGGATGGAAAAGAAGTAATG+AGG 0.584497 4_3:+52073387 Msa0646340:CDS
TCATCATTCTCCTGTGTGAG+TGG 0.588845 4_3:-52071038 None:intergenic
TCATTCTCCTGTGTGAGTGG+TGG 0.589165 4_3:-52071035 None:intergenic
AAGATATGGGCCTTACAAGA+TGG 0.590275 4_3:+52074764 Msa0646340:intron
TTCTCCTCCACCACTCACAC+AGG 0.595333 4_3:+52071028 Msa0646340:CDS
CTCTTGCTTACGTATAACCT+CGG 0.597641 4_3:-52072661 None:intergenic
GTGGATGCAATAGGCAGTAG+TGG 0.602202 4_3:+52074317 Msa0646340:CDS
TAATTCTGGAAATAAAACTC+AGG 0.612309 4_3:-52072362 None:intergenic
CGGCTCAGAAATTGTCGTTG+TGG 0.613524 4_3:+52074298 Msa0646340:CDS
AGTTGGAAAGGAAAGAAAGC+CGG 0.613737 4_3:-52073097 None:intergenic
AGGACCTTATAACTTGGCTA+TGG 0.614764 4_3:+52073508 Msa0646340:CDS
AACATTTCTCCAATAGCCAT+AGG 0.636081 4_3:-52071164 None:intergenic
GAGTTGTGTTGTGTAAGTGC+AGG 0.638222 4_3:-52072510 None:intergenic
GTTCAGTCACTGTGCCTCAG+GGG 0.641281 4_3:+52073040 Msa0646340:CDS
GCACAACAGTCGTTATTGGA+GGG 0.644415 4_3:+52074786 Msa0646340:CDS
AGAGCATCAATCCAAGATGT+CGG 0.650072 4_3:+52072702 Msa0646340:CDS
CCAGAAAGGTCCTTATGGTG+TGG 0.650861 4_3:+52071097 Msa0646340:CDS
GAGAATGATGATATCAACAG+TGG 0.661987 4_3:+52071050 Msa0646340:CDS
CTGCTGTTGATAATGGGTGG+AGG 0.663763 4_3:+52072988 Msa0646340:CDS
TATGGATTATTATGAAAGTG+GGG 0.664635 4_3:+52073158 Msa0646340:CDS
AGCAGTTGATGGTGAATGAG+AGG 0.669144 4_3:-52070941 None:intergenic
GAGGAACTTTAAGTGCTGCA+GGG 0.669763 4_3:+52073007 Msa0646340:CDS
AATACATGTGATCAAAACCA+AGG 0.672461 4_3:-52072436 None:intergenic
TGGTATCACCATATACCAGA+CGG 0.679132 4_3:+52073445 Msa0646340:CDS
GTTCTGTTGAATTTGAACAA+GGG 0.681172 4_3:-52070900 None:intergenic
GCACTGCTGTTGATAATGGG+TGG 0.691436 4_3:+52072985 Msa0646340:CDS
GGATTATTATGAAAGTGGGG+AGG 0.692179 4_3:+52073161 Msa0646340:CDS
GCAGTTGATGGTGAATGAGA+GGG 0.694383 4_3:-52070940 None:intergenic
ACAACAAAATTCAGCCCCTG+AGG 0.701712 4_3:-52073054 None:intergenic
GGAAAGGAAAGAAAGCCGGT+AGG 0.713048 4_3:-52073093 None:intergenic
CTAACACAGGATGATCTTCG+GGG 0.719698 4_3:-52072385 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATTTTAAGAACTAAATA+GGG - chr4_3:52071283-52071302 None:intergenic 10.0%
!!! TAAAATTTTAAGAACTAAAT+AGG - chr4_3:52071284-52071303 None:intergenic 10.0%
!!! ATTTTGATTAAATTGATTTT+AGG + chr4_3:52072051-52072070 Msa0646340:intron 10.0%
!! TTCAAAAATAAATTATGTTA+CGG - chr4_3:52072091-52072110 None:intergenic 10.0%
!! AAAATATTTGTTTCAATATT+TGG + chr4_3:52073641-52073660 Msa0646340:intron 10.0%
!!! TAAAATGTGAATTTAATTTT+TGG + chr4_3:52074733-52074752 Msa0646340:intron 10.0%
!!! TAGTTCTTAAAATTTTACAT+AGG + chr4_3:52071287-52071306 Msa0646340:intron 15.0%
!! ATTAAGTTATTTATCAAAAC+AGG + chr4_3:52071663-52071682 Msa0646340:intron 15.0%
!!! TGTAAATTTGCTTTAATAAA+AGG + chr4_3:52071804-52071823 Msa0646340:intron 15.0%
!!! GTAAATTTGCTTTAATAAAA+GGG + chr4_3:52071805-52071824 Msa0646340:intron 15.0%
!! AAAATGTAAATTTGGATTAT+AGG + chr4_3:52072888-52072907 Msa0646340:intron 15.0%
!!! GTTTTTGTTTTATATGAAAT+TGG + chr4_3:52073193-52073212 Msa0646340:intron 15.0%
!!! AATGAATTTTAGTTTGTATT+TGG + chr4_3:52073698-52073717 Msa0646340:intron 15.0%
!!! ATGAATTTTAGTTTGTATTT+GGG + chr4_3:52073699-52073718 Msa0646340:intron 15.0%
!!! CAAAAATCTTTTTCTTTTAT+TGG - chr4_3:52074014-52074033 None:intergenic 15.0%
!!! CTTTATTTTATCCTTTGATA+TGG + chr4_3:52071622-52071641 Msa0646340:intron 20.0%
!!! TCTAAATAACAAAAGTACTA+TGG - chr4_3:52071689-52071708 None:intergenic 20.0%
!!! AAGACATAGTTTCTTTTTTT+GGG - chr4_3:52071869-52071888 None:intergenic 20.0%
!!! CTTATCTTATGGTTTTATTA+AGG - chr4_3:52072001-52072020 None:intergenic 20.0%
!! AAAATATTCAAGTCTATTGT+TGG - chr4_3:52072854-52072873 None:intergenic 20.0%
!!! TGCTATTTTGTTGTAAAATT+TGG + chr4_3:52073308-52073327 Msa0646340:intron 20.0%
!! ATACAAACTAAAATTCATTG+AGG - chr4_3:52073697-52073716 None:intergenic 20.0%
!!! TGAATTTTAGTTTGTATTTG+GGG + chr4_3:52073700-52073719 Msa0646340:intron 20.0%
!! TAGATAATTGTAATAGTTTG+AGG + chr4_3:52073986-52074005 Msa0646340:intron 20.0%
!! AAATTACAAATTAAGTGCAA+AGG + chr4_3:52074075-52074094 Msa0646340:intron 20.0%
!! TCTATAAATGAAAGCAAAAT+TGG - chr4_3:52074610-52074629 None:intergenic 20.0%
!!! TTTTGGTAAATTGAAAGATA+TGG + chr4_3:52074750-52074769 Msa0646340:intron 20.0%
!! TTTGGTAAATTGAAAGATAT+GGG + chr4_3:52074751-52074770 Msa0646340:intron 20.0%
!!! TTCACCATTGCTTTTTTAAT+GGG + chr4_3:52071185-52071204 Msa0646340:CDS 25.0%
! TTTCATAAACTCTCTCAAAT+AGG - chr4_3:52071349-52071368 None:intergenic 25.0%
!!! GGGTGAACTTTAAAATATTA+TGG + chr4_3:52071751-52071770 Msa0646340:intron 25.0%
!!! CAAGACATAGTTTCTTTTTT+TGG - chr4_3:52071870-52071889 None:intergenic 25.0%
!! TTTTTGCATTGGAAATTGTA+CGG - chr4_3:52071926-52071945 None:intergenic 25.0%
!! AAAAGTAGCAATTTTTGCAT+TGG - chr4_3:52071937-52071956 None:intergenic 25.0%
! GCAAACATATACTTATCTTA+TGG - chr4_3:52072012-52072031 None:intergenic 25.0%
! TAAGTATATGTTTGCTTCTA+CGG + chr4_3:52072017-52072036 Msa0646340:intron 25.0%
! GCACTAAAGAAAAATTTCTA+TGG + chr4_3:52072310-52072329 Msa0646340:intron 25.0%
! TAAAGAAAAATTTCTATGGC+AGG + chr4_3:52072314-52072333 Msa0646340:intron 25.0%
!! TAATTCTGGAAATAAAACTC+AGG - chr4_3:52072365-52072384 None:intergenic 25.0%
!!! GGATTATAGGTATTTTTGAA+AGG + chr4_3:52072901-52072920 Msa0646340:intron 25.0%
!! TCTATGGATTATTATGAAAG+TGG + chr4_3:52073156-52073175 Msa0646340:CDS 25.0%
!! CTATGGATTATTATGAAAGT+GGG + chr4_3:52073157-52073176 Msa0646340:CDS 25.0%
!! TATGGATTATTATGAAAGTG+GGG + chr4_3:52073158-52073177 Msa0646340:CDS 25.0%
!! AAATACACTTTGACTTATTC+TGG - chr4_3:52073256-52073275 None:intergenic 25.0%
! TGATACCATCATATCTTAAA+GGG - chr4_3:52073433-52073452 None:intergenic 25.0%
! AATGGAGATAAGAAACTTTA+TGG + chr4_3:52073545-52073564 Msa0646340:CDS 25.0%
! ATCAGATAATTGAAGTAGTT+AGG + chr4_3:52073947-52073966 Msa0646340:intron 25.0%
! TAACATAAGCATTAAGCAAT+AGG - chr4_3:52074424-52074443 None:intergenic 25.0%
!!! AGTGTTATTTGCTCATTTTT+AGG - chr4_3:52074670-52074689 None:intergenic 25.0%
! TAAAAATGAGCAAATAACAC+TGG + chr4_3:52074669-52074688 Msa0646340:intron 25.0%
! ATGATGATTCAACTATTTCA+GGG - chr4_3:52074871-52074890 None:intergenic 25.0%
!!! TTATAGCTTTTGAGATATCA+AGG + chr4_3:52074929-52074948 Msa0646340:three_prime_UTR 25.0%
! GAATTAAAAGACTCTTCAAT+TGG + chr4_3:52074955-52074974 Msa0646340:three_prime_UTR 25.0%
!!! TGAATAGTATCTTTGCTATT+TGG + chr4_3:52075195-52075214 Msa0646340:three_prime_UTR 25.0%
!! TTGAGAAGACATTGATTCAT+AGG - chr4_3:52070864-52070883 None:intergenic 30.0%
GTTCTGTTGAATTTGAACAA+GGG - chr4_3:52070903-52070922 None:intergenic 30.0%
AGTTCTGTTGAATTTGAACA+AGG - chr4_3:52070904-52070923 None:intergenic 30.0%
!!! GTTCACCATTGCTTTTTTAA+TGG + chr4_3:52071184-52071203 Msa0646340:CDS 30.0%
!!! TCACCATTGCTTTTTTAATG+GGG + chr4_3:52071186-52071205 Msa0646340:CDS 30.0%
!!! ATTGCTTTTTTAATGGGGTT+GGG + chr4_3:52071191-52071210 Msa0646340:CDS 30.0%
CTATGTTATCTCCATATCAA+AGG - chr4_3:52071636-52071655 None:intergenic 30.0%
CTTTGATATGGAGATAACAT+AGG + chr4_3:52071634-52071653 Msa0646340:intron 30.0%
! AATATTTTCACGTGAAAGTG+AGG + chr4_3:52072109-52072128 Msa0646340:intron 30.0%
AAAAATGACCAAGACATGTT+TGG - chr4_3:52072243-52072262 None:intergenic 30.0%
!! GAGAGCTAAAATTGATTTTG+AGG - chr4_3:52072270-52072289 None:intergenic 30.0%
!!! GCATATTTACGTTAGCTTTT+GGG - chr4_3:52072292-52072311 None:intergenic 30.0%
!!! TGCATATTTACGTTAGCTTT+TGG - chr4_3:52072293-52072312 None:intergenic 30.0%
CAAGTAAAAAATCCTAACAC+AGG - chr4_3:52072401-52072420 None:intergenic 30.0%
!!! CTGTGTTAGGATTTTTTACT+TGG + chr4_3:52072399-52072418 Msa0646340:CDS 30.0%
!!! TAGGATTTTTTACTTGGAGA+TGG + chr4_3:52072405-52072424 Msa0646340:CDS 30.0%
AATACATGTGATCAAAACCA+AGG - chr4_3:52072439-52072458 None:intergenic 30.0%
TCCTATATTTCTTGCAATGT+TGG + chr4_3:52072463-52072482 Msa0646340:CDS 30.0%
!!! TTTTTGAAACCTTGATGAGT+GGG - chr4_3:52072535-52072554 None:intergenic 30.0%
ATCAAGGTTTCAAAAAGGTT+TGG + chr4_3:52072539-52072558 Msa0646340:intron 30.0%
! TTTTCTGTGTTCATAATGCT+TGG + chr4_3:52072574-52072593 Msa0646340:intron 30.0%
!! TTAATATAGTACCGACATCT+TGG - chr4_3:52072716-52072735 None:intergenic 30.0%
AGATGTCGGTACTATATTAA+TGG + chr4_3:52072716-52072735 Msa0646340:CDS 30.0%
GATGTCGGTACTATATTAAT+GGG + chr4_3:52072717-52072736 Msa0646340:CDS 30.0%
AAATAGTCAAGTGTGAATCA+TGG - chr4_3:52072770-52072789 None:intergenic 30.0%
GCGCTAACAAAATGTAAATT+TGG + chr4_3:52072880-52072899 Msa0646340:intron 30.0%
!! ATTAAAAGCATCAGTTGGAA+AGG - chr4_3:52073112-52073131 None:intergenic 30.0%
!! TCTGTATTAAAAGCATCAGT+TGG - chr4_3:52073117-52073136 None:intergenic 30.0%
! TGGTTTTCGATTTTTGTTAC+AGG + chr4_3:52073328-52073347 Msa0646340:intron 30.0%
GTGATACCATCATATCTTAA+AGG - chr4_3:52073434-52073453 None:intergenic 30.0%
TTATCTCCATTGATCTTTAG+AGG - chr4_3:52073536-52073555 None:intergenic 30.0%
! ACTTTATGGTACTTTTCTAC+CGG + chr4_3:52073559-52073578 Msa0646340:CDS 30.0%
ACTTACATTCCTTTAACATC+AGG - chr4_3:52073602-52073621 None:intergenic 30.0%
GTTTCAATATTTGGAAGCTT+TGG + chr4_3:52073650-52073669 Msa0646340:intron 30.0%
GTCAATTGTCCTTTATGATA+AGG + chr4_3:52074220-52074239 Msa0646340:CDS 30.0%
ATTGTCCTTTATGATAAGGA+AGG + chr4_3:52074224-52074243 Msa0646340:CDS 30.0%
TTGTCCTTTATGATAAGGAA+GGG + chr4_3:52074225-52074244 Msa0646340:CDS 30.0%
ATTTCCCTTCCTTATCATAA+AGG - chr4_3:52074232-52074251 None:intergenic 30.0%
TAAAGGAAAATAACCAGACT+TGG - chr4_3:52074369-52074388 None:intergenic 30.0%
ACACAACTAATTGCATCTAA+AGG - chr4_3:52074386-52074405 None:intergenic 30.0%
TTATGCATATGACATTTGTC+TGG - chr4_3:52074637-52074656 None:intergenic 30.0%
GATGATGATTCAACTATTTC+AGG - chr4_3:52074872-52074891 None:intergenic 30.0%
TAAAAGACTCTTCAATTGGA+TGG + chr4_3:52074959-52074978 Msa0646340:three_prime_UTR 30.0%
AAAAGACTCTTCAATTGGAT+GGG + chr4_3:52074960-52074979 Msa0646340:three_prime_UTR 30.0%
CGACATACAAACATACAAAT+TGG + chr4_3:52075021-52075040 Msa0646340:three_prime_UTR 30.0%
! AAGATGATCTGCAAAAGTTT+TGG - chr4_3:52075068-52075087 None:intergenic 30.0%
AGTTTCAGTTTCCAGTTTGA+GGG - chr4_3:52070797-52070816 None:intergenic 35.0%
TTGAACAAGGGATGAAAAGT+GGG - chr4_3:52070891-52070910 None:intergenic 35.0%
TTTGAACAAGGGATGAAAAG+TGG - chr4_3:52070892-52070911 None:intergenic 35.0%
TGCTGCAATCTCAAAAACAA+GGG + chr4_3:52070960-52070979 Msa0646340:CDS 35.0%
GAGAATGATGATATCAACAG+TGG + chr4_3:52071050-52071069 Msa0646340:CDS 35.0%
GGTCAAGAAGTTGAGTAAAA+AGG + chr4_3:52071118-52071137 Msa0646340:CDS 35.0%
! GATTCTCTCTAATTTGCCTA+TGG + chr4_3:52071148-52071167 Msa0646340:CDS 35.0%
! TCTAATTTGCCTATGGCTAT+TGG + chr4_3:52071155-52071174 Msa0646340:CDS 35.0%
AACATTTCTCCAATAGCCAT+AGG - chr4_3:52071167-52071186 None:intergenic 35.0%
CAACCCCATTAAAAAAGCAA+TGG - chr4_3:52071192-52071211 None:intergenic 35.0%
!!! CATTGCTTTTTTAATGGGGT+TGG + chr4_3:52071190-52071209 Msa0646340:CDS 35.0%
! AGACTTGTTCAAACCCATTT+GGG + chr4_3:52071377-52071396 Msa0646340:intron 35.0%
!!! GGATTAGTCGATTTTTGGAT+TGG + chr4_3:52071551-52071570 Msa0646340:intron 35.0%
TTCCTTAAACAATGCCCTTA+GGG - chr4_3:52071846-52071865 None:intergenic 35.0%
ATGCTTAAACAATGCCCTTA+GGG + chr4_3:52071959-52071978 Msa0646340:intron 35.0%
AGTCTAAAAATCACGATCGA+AGG + chr4_3:52072147-52072166 Msa0646340:intron 35.0%
GCCAACATTGCAAGAAATAT+AGG - chr4_3:52072467-52072486 None:intergenic 35.0%
!!! CTTTTTGAAACCTTGATGAG+TGG - chr4_3:52072536-52072555 None:intergenic 35.0%
CACTCATCAAGGTTTCAAAA+AGG + chr4_3:52072534-52072553 Msa0646340:CDS 35.0%
! GGTTTCAAAAAGGTTTGGTT+TGG + chr4_3:52072544-52072563 Msa0646340:intron 35.0%
GACCATCTACGAAACAAATA+AGG - chr4_3:52072627-52072646 None:intergenic 35.0%
! TATAGCACTGCTGTTGATAA+TGG + chr4_3:52072981-52073000 Msa0646340:CDS 35.0%
!! ATAGCACTGCTGTTGATAAT+GGG + chr4_3:52072982-52073001 Msa0646340:CDS 35.0%
TCATGTCAACAGATTCTCTA+TGG + chr4_3:52073140-52073159 Msa0646340:CDS 35.0%
! TACACTTTGACTTATTCTGG+TGG - chr4_3:52073253-52073272 None:intergenic 35.0%
! TTTTCCATCCATGTTCAAGA+GGG - chr4_3:52073378-52073397 None:intergenic 35.0%
TGGATGGAAAAGAAGTAATG+AGG + chr4_3:52073387-52073406 Msa0646340:CDS 35.0%
!! AACGACCCTTTAAGATATGA+TGG + chr4_3:52073425-52073444 Msa0646340:CDS 35.0%
CAAATTCTCAAGGACAATGA+AGG + chr4_3:52073488-52073507 Msa0646340:CDS 35.0%
CAATGAAGGACCTTATAACT+TGG + chr4_3:52073502-52073521 Msa0646340:CDS 35.0%
GTTAACTCTCCTGATGTTAA+AGG + chr4_3:52073590-52073609 Msa0646340:CDS 35.0%
ACGAGTCTTTAGTGTATGAT+TGG + chr4_3:52073915-52073934 Msa0646340:intron 35.0%
CGAGTCTTTAGTGTATGATT+GGG + chr4_3:52073916-52073935 Msa0646340:intron 35.0%
GAGTCTTTAGTGTATGATTG+GGG + chr4_3:52073917-52073936 Msa0646340:intron 35.0%
AGTCTTTAGTGTATGATTGG+GGG + chr4_3:52073918-52073937 Msa0646340:intron 35.0%
TATCAAGTCCTAGTCTGTAA+TGG - chr4_3:52074105-52074124 None:intergenic 35.0%
TAGGACTTGATATGTCATTC+TGG + chr4_3:52074113-52074132 Msa0646340:intron 35.0%
!! TTGATTGGGAGCTTTGAATT+AGG - chr4_3:52074272-52074291 None:intergenic 35.0%
CAGCTATTTATCTCATTCAC+AGG + chr4_3:52074511-52074530 Msa0646340:CDS 35.0%
ATCTAAGCAAACTGATAGCA+TGG + chr4_3:52074895-52074914 Msa0646340:CDS 35.0%
ATTGGATGGGTGCATATATA+TGG + chr4_3:52074973-52074992 Msa0646340:three_prime_UTR 35.0%
AACATACAAATTGGATGCGA+TGG + chr4_3:52075030-52075049 Msa0646340:three_prime_UTR 35.0%
GATACAAGACATTAGAGCTT+TGG - chr4_3:52075169-52075188 None:intergenic 35.0%
CAACTGCAAACTGTACATTA+TGG - chr4_3:52075226-52075245 None:intergenic 35.0%
CAGTTTCAGTTTCCAGTTTG+AGG - chr4_3:52070798-52070817 None:intergenic 40.0%
TGTGTCACATGATGTCTTTG+AGG + chr4_3:52070835-52070854 Msa0646340:CDS 40.0%
! TTTGAGATTGCAGCAGTTGA+TGG - chr4_3:52070955-52070974 None:intergenic 40.0%
CTGCTGCAATCTCAAAAACA+AGG + chr4_3:52070959-52070978 Msa0646340:CDS 40.0%
AAGAACCAGAAAGGTCCTTA+TGG + chr4_3:52071092-52071111 Msa0646340:CDS 40.0%
AACTTCTTGACCACACCATA+AGG - chr4_3:52071110-52071129 None:intergenic 40.0%
! GAGACTTGTTCAAACCCATT+TGG + chr4_3:52071376-52071395 Msa0646340:intron 40.0%
! GACTTGTTCAAACCCATTTG+GGG + chr4_3:52071378-52071397 Msa0646340:intron 40.0%
CCAAAAATCGACTAATCCGA+GGG - chr4_3:52071549-52071568 None:intergenic 40.0%
TCCAAAAATCGACTAATCCG+AGG - chr4_3:52071550-52071569 None:intergenic 40.0%
CCACAATTCACAATCTTGAG+GGG - chr4_3:52071733-52071752 None:intergenic 40.0%
CCCACAATTCACAATCTTGA+GGG - chr4_3:52071734-52071753 None:intergenic 40.0%
CCCTCAAGATTGTGAATTGT+GGG + chr4_3:52071731-52071750 Msa0646340:intron 40.0%
ACCCACAATTCACAATCTTG+AGG - chr4_3:52071735-52071754 None:intergenic 40.0%
GTTCCTTAAACAATGCCCTT+AGG - chr4_3:52071847-52071866 None:intergenic 40.0%
GATGCTTAAACAATGCCCTT+AGG + chr4_3:52071958-52071977 Msa0646340:intron 40.0%
AATGCTAACAACTGCCCTAA+GGG - chr4_3:52071976-52071995 None:intergenic 40.0%
AAATGCTAACAACTGCCCTA+AGG - chr4_3:52071977-52071996 None:intergenic 40.0%
GTATATGTTTGCTTCTACGG+TGG + chr4_3:52072020-52072039 Msa0646340:intron 40.0%
AAGAACCACCAAACATGTCT+TGG + chr4_3:52072232-52072251 Msa0646340:intron 40.0%
AATGACCAAGACATGTTTGG+TGG - chr4_3:52072240-52072259 None:intergenic 40.0%
TCCTAACACAGGATGATCTT+CGG - chr4_3:52072390-52072409 None:intergenic 40.0%
!! TGGAGATGGATTTTCTTCCT+TGG + chr4_3:52072419-52072438 Msa0646340:CDS 40.0%
AATAAGGGATGCACCAAGAA+GGG - chr4_3:52072489-52072508 None:intergenic 40.0%
TGTGTAAGTGCAGGCAATAA+GGG - chr4_3:52072504-52072523 None:intergenic 40.0%
TTGTGTAAGTGCAGGCAATA+AGG - chr4_3:52072505-52072524 None:intergenic 40.0%
CGACATTTCTTGATCACTGA+GGG + chr4_3:52072601-52072620 Msa0646340:intron 40.0%
!! GGCCTTATTTGTTTCGTAGA+TGG + chr4_3:52072622-52072641 Msa0646340:intron 40.0%
CTCTTGCTTACGTATAACCT+CGG - chr4_3:52072664-52072683 None:intergenic 40.0%
ACATCTTGGATTGATGCTCT+TGG - chr4_3:52072702-52072721 None:intergenic 40.0%
! AGAGCATCAATCCAAGATGT+CGG + chr4_3:52072702-52072721 Msa0646340:CDS 40.0%
GGTACTATATTAATGGGAGC+TGG + chr4_3:52072723-52072742 Msa0646340:CDS 40.0%
ATTAATGGGAGCTGGATATG+AGG + chr4_3:52072731-52072750 Msa0646340:CDS 40.0%
! CCAACTTTGTATGCTTTTCG+CGG + chr4_3:52072925-52072944 Msa0646340:CDS 40.0%
! TTTGTTGTAGGAGACGTTCT+CGG + chr4_3:52073069-52073088 Msa0646340:CDS 40.0%
AGTTGGAAAGGAAAGAAAGC+CGG - chr4_3:52073100-52073119 None:intergenic 40.0%
GGATTATTATGAAAGTGGGG+AGG + chr4_3:52073161-52073180 Msa0646340:CDS 40.0%
CATGTTCAAGAGGGAAAGAT+CGG - chr4_3:52073369-52073388 None:intergenic 40.0%
! CTTTTCCATCCATGTTCAAG+AGG - chr4_3:52073379-52073398 None:intergenic 40.0%
TGGTATCACCATATACCAGA+CGG + chr4_3:52073445-52073464 Msa0646340:CDS 40.0%
TTCAGCTCTGCAAATTCTCA+AGG + chr4_3:52073478-52073497 Msa0646340:CDS 40.0%
AGGACCTTATAACTTGGCTA+TGG + chr4_3:52073508-52073527 Msa0646340:CDS 40.0%
! ATGGCACCTCTAAAGATCAA+TGG + chr4_3:52073527-52073546 Msa0646340:CDS 40.0%
! TATGGTACTTTTCTACCGGT+TGG + chr4_3:52073563-52073582 Msa0646340:CDS 40.0%
TGAGTGTTTACGAAAGCTTG+TGG + chr4_3:52073767-52073786 Msa0646340:intron 40.0%
CATAAAGGACAATTGACTGC+AGG - chr4_3:52074217-52074236 None:intergenic 40.0%
GATAAGGAAGGGAAATTTGC+AGG + chr4_3:52074236-52074255 Msa0646340:CDS 40.0%
AAGCTCCCAATCAACATTGA+CGG + chr4_3:52074278-52074297 Msa0646340:CDS 40.0%
ATTGTCGTTGTGGATGCAAT+AGG + chr4_3:52074308-52074327 Msa0646340:CDS 40.0%
AAGCAATAGGTCAGTGACAA+AGG - chr4_3:52074411-52074430 None:intergenic 40.0%
TATGTTATGCAGACTGATCC+TGG + chr4_3:52074437-52074456 Msa0646340:intron 40.0%
CCAAATCCAGCATATACAAC+TGG - chr4_3:52074467-52074486 None:intergenic 40.0%
CCAGTTGTATATGCTGGATT+TGG + chr4_3:52074464-52074483 Msa0646340:CDS 40.0%
AAGATATGGGCCTTACAAGA+TGG + chr4_3:52074764-52074783 Msa0646340:intron 40.0%
CAGAGCTAAGTTAGAGTTTC+CGG + chr4_3:52074817-52074836 Msa0646340:CDS 40.0%
! GACATTAGAGCTTTGGTATC+TGG - chr4_3:52075162-52075181 None:intergenic 40.0%
!! GCAGTTGATGGTGAATGAGA+GGG - chr4_3:52070943-52070962 None:intergenic 45.0%
!! AGCAGTTGATGGTGAATGAG+AGG - chr4_3:52070944-52070963 None:intergenic 45.0%
TCATCATTCTCCTGTGTGAG+TGG - chr4_3:52071041-52071060 None:intergenic 45.0%
!! TTCTGGTTCTTTGAGCTTGC+TGG - chr4_3:52071083-52071102 None:intergenic 45.0%
GCAAGCTCAAAGAACCAGAA+AGG + chr4_3:52071083-52071102 Msa0646340:CDS 45.0%
! TGTTCAAACCCATTTGGGGT+TGG + chr4_3:52071382-52071401 Msa0646340:intron 45.0%
AAGATTCCAAGCCAACCACT+AGG - chr4_3:52071408-52071427 None:intergenic 45.0%
!! TAGTGGTTGGCTTGGAATCT+TGG + chr4_3:52071407-52071426 Msa0646340:intron 45.0%
! CTTGGAGTTTGCTCATCCAT+AGG + chr4_3:52071425-52071444 Msa0646340:intron 45.0%
GGAATCGAACTTGAGACCTA+TGG - chr4_3:52071444-52071463 None:intergenic 45.0%
! ATTCCCTCTGGTGCCAATTT+CGG + chr4_3:52071459-52071478 Msa0646340:intron 45.0%
!! GAGCTTGCTCTGGCTTTAAA+CGG + chr4_3:52071499-52071518 Msa0646340:intron 45.0%
!! AGCTTGCTCTGGCTTTAAAC+GGG + chr4_3:52071500-52071519 Msa0646340:intron 45.0%
!!! CCCTCGGATTAGTCGATTTT+TGG + chr4_3:52071546-52071565 Msa0646340:intron 45.0%
CCCCTCAAGATTGTGAATTG+TGG + chr4_3:52071730-52071749 Msa0646340:intron 45.0%
TCTTGCTAACAAGTGCCCTA+AGG + chr4_3:52071828-52071847 Msa0646340:intron 45.0%
CTTGCTAACAAGTGCCCTAA+GGG + chr4_3:52071829-52071848 Msa0646340:intron 45.0%
!! TGCCCTAAGGGCATTGTTTA+AGG + chr4_3:52071841-52071860 Msa0646340:intron 45.0%
! GCAGGCACTTTTATTGACCA+AGG + chr4_3:52072332-52072351 Msa0646340:intron 45.0%
AAAACTCAGGTTTCTCGCCT+TGG - chr4_3:52072352-52072371 None:intergenic 45.0%
GATGATCTTCGGGGTAATTC+TGG - chr4_3:52072379-52072398 None:intergenic 45.0%
CTAACACAGGATGATCTTCG+GGG - chr4_3:52072388-52072407 None:intergenic 45.0%
CCTAACACAGGATGATCTTC+GGG - chr4_3:52072389-52072408 None:intergenic 45.0%
CAATAAGGGATGCACCAAGA+AGG - chr4_3:52072490-52072509 None:intergenic 45.0%
GAGTTGTGTTGTGTAAGTGC+AGG - chr4_3:52072513-52072532 None:intergenic 45.0%
AACACAACTCCCACTCATCA+AGG + chr4_3:52072523-52072542 Msa0646340:CDS 45.0%
GCGACATTTCTTGATCACTG+AGG + chr4_3:52072600-52072619 Msa0646340:intron 45.0%
! CCGCGAAAAGCATACAAAGT+TGG - chr4_3:52072928-52072947 None:intergenic 45.0%
AGTGCTATATGAACGCCAAC+AGG - chr4_3:52072970-52072989 None:intergenic 45.0%
! GAGGAACTTTAAGTGCTGCA+GGG + chr4_3:52073007-52073026 Msa0646340:CDS 45.0%
ACAACAAAATTCAGCCCCTG+AGG - chr4_3:52073057-52073076 None:intergenic 45.0%
!! CAGGGGCTGAATTTTGTTGT+AGG + chr4_3:52073057-52073076 Msa0646340:CDS 45.0%
GAAAGTGGGGAGGTAAATGT+TGG + chr4_3:52073171-52073190 Msa0646340:intron 45.0%
CGATCTTTCCCTCTTGAACA+TGG + chr4_3:52073367-52073386 Msa0646340:CDS 45.0%
CTTTCCCTCTTGAACATGGA+TGG + chr4_3:52073371-52073390 Msa0646340:CDS 45.0%
TCACCATATACCAGACGGAT+TGG + chr4_3:52073450-52073469 Msa0646340:CDS 45.0%
ACTCCAATCCGTCTGGTATA+TGG - chr4_3:52073456-52073475 None:intergenic 45.0%
CTGAAATACTCCAATCCGTC+TGG - chr4_3:52073463-52073482 None:intergenic 45.0%
! GGTGCCATAGCCAAGTTATA+AGG - chr4_3:52073515-52073534 None:intergenic 45.0%
GGAGAGTTAACATCTCCAAC+CGG - chr4_3:52073581-52073600 None:intergenic 45.0%
AAGGACCACCATTACAGACT+AGG + chr4_3:52074094-52074113 Msa0646340:intron 45.0%
CAAGTCCTAGTCTGTAATGG+TGG - chr4_3:52074102-52074121 None:intergenic 45.0%
! CTGAGCCGTCAATGTTGATT+GGG - chr4_3:52074286-52074305 None:intergenic 45.0%
TCTGAGCCGTCAATGTTGAT+TGG - chr4_3:52074287-52074306 None:intergenic 45.0%
GACTGTTGTGCCATCTTGTA+AGG - chr4_3:52074777-52074796 None:intergenic 45.0%
GATGGCACAACAGTCGTTAT+TGG + chr4_3:52074782-52074801 Msa0646340:CDS 45.0%
GCACAACAGTCGTTATTGGA+GGG + chr4_3:52074786-52074805 Msa0646340:CDS 45.0%
! CAGGGATTTTGTCAAGCAAG+AGG - chr4_3:52074853-52074872 None:intergenic 45.0%
!!! TTTTAATATATAATTAAACA+TGG - chr4_3:52074718-52074737 None:intergenic 5.0%
!!! TTATTTTTATTTTATTTGAT+AGG + chr4_3:52075135-52075154 Msa0646340:intron 5.0%
!!! TATTTTTATTTTATTTGATA+GGG + chr4_3:52075136-52075155 Msa0646340:intron 5.0%
TCATTCTCCTGTGTGAGTGG+TGG - chr4_3:52071038-52071057 None:intergenic 50.0%
CCACACCATAAGGACCTTTC+TGG - chr4_3:52071100-52071119 None:intergenic 50.0%
CCAGAAAGGTCCTTATGGTG+TGG + chr4_3:52071097-52071116 Msa0646340:CDS 50.0%
GTCTCAAGTTCGATTCCCTC+TGG + chr4_3:52071447-52071466 Msa0646340:intron 50.0%
TGGACTTAGCCCACCGAAAT+TGG - chr4_3:52071475-52071494 None:intergenic 50.0%
! AGTCCATACAGAGCTTGCTC+TGG + chr4_3:52071489-52071508 Msa0646340:intron 50.0%
AAGCCAGAGCAAGCTCTGTA+TGG - chr4_3:52071495-52071514 None:intergenic 50.0%
CCCGAAGATCATCCTGTGTT+AGG + chr4_3:52072386-52072405 Msa0646340:CDS 50.0%
CTTGCAATGTTGGCCCTTCT+TGG + chr4_3:52072473-52072492 Msa0646340:CDS 50.0%
GTCATTTATGCACTCTGCCG+AGG + chr4_3:52072644-52072663 Msa0646340:CDS 50.0%
! TATGCTTTTCGCGGACTTGC+CGG + chr4_3:52072934-52072953 Msa0646340:CDS 50.0%
!! GCACTGCTGTTGATAATGGG+TGG + chr4_3:52072985-52073004 Msa0646340:CDS 50.0%
!! CTGCTGTTGATAATGGGTGG+AGG + chr4_3:52072988-52073007 Msa0646340:CDS 50.0%
! GGAGGAACTTTAAGTGCTGC+AGG + chr4_3:52073006-52073025 Msa0646340:CDS 50.0%
! AGTGCTGCAGGGAGCTTTAA+AGG + chr4_3:52073018-52073037 Msa0646340:CDS 50.0%
GGAAAGGAAAGAAAGCCGGT+AGG - chr4_3:52073096-52073115 None:intergenic 50.0%
CGGCTCAGAAATTGTCGTTG+TGG + chr4_3:52074298-52074317 Msa0646340:CDS 50.0%
GTGGATGCAATAGGCAGTAG+TGG + chr4_3:52074317-52074336 Msa0646340:CDS 50.0%
TGCAATAGGCAGTAGTGGCT+TGG + chr4_3:52074322-52074341 Msa0646340:CDS 50.0%
! CAGTAGTGGCTTGGACTTGA+AGG + chr4_3:52074331-52074350 Msa0646340:CDS 50.0%
GTGTGAGCTTAAGCCAAGTC+TGG + chr4_3:52074353-52074372 Msa0646340:intron 50.0%
GGCACAACAGTCGTTATTGG+AGG + chr4_3:52074785-52074804 Msa0646340:CDS 50.0%
AGCAAGAGGTTCATCTCGTC+CGG - chr4_3:52074839-52074858 None:intergenic 50.0%
TTCTCCTCCACCACTCACAC+AGG + chr4_3:52071028-52071047 Msa0646340:CDS 55.0%
TTCTCCTGTGTGAGTGGTGG+AGG - chr4_3:52071035-52071054 None:intergenic 55.0%
CCACTAGGCCAACCCCAAAT+GGG - chr4_3:52071393-52071412 None:intergenic 55.0%
ACCACTAGGCCAACCCCAAA+TGG - chr4_3:52071394-52071413 None:intergenic 55.0%
!! TTTGGGGTTGGCCTAGTGGT+TGG + chr4_3:52071394-52071413 Msa0646340:intron 55.0%
CCACCGAAATTGGCACCAGA+GGG - chr4_3:52071465-52071484 None:intergenic 55.0%
! CCTCTGGTGCCAATTTCGGT+GGG + chr4_3:52071463-52071482 Msa0646340:intron 55.0%
AGGTTCAGTCACTGTGCCTC+AGG + chr4_3:52073038-52073057 Msa0646340:CDS 55.0%
GGTTCAGTCACTGTGCCTCA+GGG + chr4_3:52073039-52073058 Msa0646340:CDS 55.0%
GTTCAGTCACTGTGCCTCAG+GGG + chr4_3:52073040-52073059 Msa0646340:CDS 55.0%
GCATATACAACTGGCACGCC+AGG - chr4_3:52074458-52074477 None:intergenic 55.0%
GGCGTGCCAGTTGTATATGC+TGG + chr4_3:52074458-52074477 Msa0646340:CDS 55.0%
!! CCCATTTGGGGTTGGCCTAG+TGG + chr4_3:52071390-52071409 Msa0646340:intron 60.0%
!! GGTTGGCCTAGTGGTTGGCT+TGG + chr4_3:52071399-52071418 Msa0646340:intron 60.0%
! CCCTCTGGTGCCAATTTCGG+TGG + chr4_3:52071462-52071481 Msa0646340:intron 60.0%
CCCACCGAAATTGGCACCAG+AGG - chr4_3:52071466-52071485 None:intergenic 60.0%
! CTTTTCGCGGACTTGCCGGT+CGG + chr4_3:52072938-52072957 Msa0646340:CDS 60.0%
GGAGACGTTCTCGGTCCTAC+CGG + chr4_3:52073078-52073097 Msa0646340:CDS 60.0%
TTAAACGGGCCCCCCGCAAG+TGG + chr4_3:52071514-52071533 Msa0646340:intron 65.0%
TAAACGGGCCCCCCGCAAGT+GGG + chr4_3:52071515-52071534 Msa0646340:intron 65.0%
GCCAACAGGAGCTAGCCGAC+CGG - chr4_3:52072956-52072975 None:intergenic 65.0%
AGGGTCCCACCGCCCACTTG+CGG - chr4_3:52071530-52071549 None:intergenic 70.0%
CAAGTGGGCGGTGGGACCCT+CGG + chr4_3:52071530-52071549 Msa0646340:intron 70.0%
! GCCGGTCGGCTAGCTCCTGT+TGG + chr4_3:52072952-52072971 Msa0646340:CDS 70.0%
TCCCACCGCCCACTTGCGGG+GGG - chr4_3:52071526-52071545 None:intergenic 75.0%
GTCCCACCGCCCACTTGCGG+GGG - chr4_3:52071527-52071546 None:intergenic 75.0%
GGTCCCACCGCCCACTTGCG+GGG - chr4_3:52071528-52071547 None:intergenic 75.0%
GGGTCCCACCGCCCACTTGC+GGG - chr4_3:52071529-52071548 None:intergenic 75.0%
! ACGGGCCCCCCGCAAGTGGG+CGG + chr4_3:52071518-52071537 Msa0646340:intron 80.0%
! GCCCCCCGCAAGTGGGCGGT+GGG + chr4_3:52071522-52071541 Msa0646340:intron 80.0%
! GGCCCCCCGCAAGTGGGCGG+TGG + chr4_3:52071521-52071540 Msa0646340:intron 85.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 52070786 52075248 52070786 ID=Msa0646340;Name=Msa0646340
chr4_3 mRNA 52070786 52075248 52070786 ID=Msa0646340-mRNA-1;Parent=Msa0646340;Name=Msa0646340-mRNA-1;_AED=0.10;_eAED=0.10;_QI=48|1|1|1|0.87|0.77|9|303|549
chr4_3 exon 52070786 52071212 52070786 ID=Msa0646340-mRNA-1:exon:12656;Parent=Msa0646340-mRNA-1
chr4_3 exon 52072336 52072555 52072336 ID=Msa0646340-mRNA-1:exon:12657;Parent=Msa0646340-mRNA-1
chr4_3 exon 52072641 52072752 52072641 ID=Msa0646340-mRNA-1:exon:12658;Parent=Msa0646340-mRNA-1
chr4_3 exon 52072910 52073182 52072910 ID=Msa0646340-mRNA-1:exon:12659;Parent=Msa0646340-mRNA-1
chr4_3 exon 52073350 52073615 52073350 ID=Msa0646340-mRNA-1:exon:12660;Parent=Msa0646340-mRNA-1
chr4_3 exon 52074196 52074352 52074196 ID=Msa0646340-mRNA-1:exon:12661;Parent=Msa0646340-mRNA-1
chr4_3 exon 52074449 52074532 52074449 ID=Msa0646340-mRNA-1:exon:12662;Parent=Msa0646340-mRNA-1
chr4_3 exon 52074767 52075132 52074767 ID=Msa0646340-mRNA-1:exon:12663;Parent=Msa0646340-mRNA-1
chr4_3 exon 52075153 52075248 52075153 ID=Msa0646340-mRNA-1:exon:12664;Parent=Msa0646340-mRNA-1
chr4_3 five_prime_UTR 52070786 52070833 52070786 ID=Msa0646340-mRNA-1:five_prime_utr;Parent=Msa0646340-mRNA-1
chr4_3 CDS 52070834 52071212 52070834 ID=Msa0646340-mRNA-1:cds;Parent=Msa0646340-mRNA-1
chr4_3 CDS 52072336 52072555 52072336 ID=Msa0646340-mRNA-1:cds;Parent=Msa0646340-mRNA-1
chr4_3 CDS 52072641 52072752 52072641 ID=Msa0646340-mRNA-1:cds;Parent=Msa0646340-mRNA-1
chr4_3 CDS 52072910 52073182 52072910 ID=Msa0646340-mRNA-1:cds;Parent=Msa0646340-mRNA-1
chr4_3 CDS 52073350 52073615 52073350 ID=Msa0646340-mRNA-1:cds;Parent=Msa0646340-mRNA-1
chr4_3 CDS 52074196 52074352 52074196 ID=Msa0646340-mRNA-1:cds;Parent=Msa0646340-mRNA-1
chr4_3 CDS 52074449 52074532 52074449 ID=Msa0646340-mRNA-1:cds;Parent=Msa0646340-mRNA-1
chr4_3 CDS 52074767 52074925 52074767 ID=Msa0646340-mRNA-1:cds;Parent=Msa0646340-mRNA-1
chr4_3 three_prime_UTR 52074926 52075132 52074926 ID=Msa0646340-mRNA-1:three_prime_utr;Parent=Msa0646340-mRNA-1
chr4_3 three_prime_UTR 52075153 52075248 52075153 ID=Msa0646340-mRNA-1:three_prime_utr;Parent=Msa0646340-mRNA-1
Gene Sequence

>Msa0646340

ATGTGTCACATGATGTCTTTGAGGACTCCTATGAATCAATGTCTTCTCAAAGTTCCCACTTTTCATCCCTTGTTCAAATTCAACAGAACTCATACTCATCATAACACCCTCTCATTCACCATCAACTGCTGCAATCTCAAAAACAAGGGAAAGAATAATAACTTGTTGTCACAGAAGATTGTCTTATCAGAATCTTCTCCTCCACCACTCACACAGGAGAATGATGATATCAACAGTGGAAATGTTCCAGCAAGCTCAAAGAACCAGAAAGGTCCTTATGGTGTGGTCAAGAAGTTGAGTAAAAAGGTGTTGCAGATTCTCTCTAATTTGCCTATGGCTATTGGAGAAATGTTCACCATTGCTTTTTTAATGGGGTTGGGCACTTTTATTGACCAAGGCGAGAAACCTGAGTTTTATTTCCAGAATTACCCCGAAGATCATCCTGTGTTAGGATTTTTTACTTGGAGATGGATTTTCTTCCTTGGTTTTGATCACATGTATTCAGCTCCTATATTTCTTGCAATGTTGGCCCTTCTTGGTGCATCCCTTATTGCCTGCACTTACACAACACAACTCCCACTCATCAAGGTTTCAAAAAGATGGTCATTTATGCACTCTGCCGAGGTTATACGTAAGCAAGAGTTTTCAGAATCATTGCCAAGAGCATCAATCCAAGATGTCGGTACTATATTAATGGGAGCTGGATATGAGGTATTTTTGAAAGGACCAACTTTGTATGCTTTTCGCGGACTTGCCGGTCGGCTAGCTCCTGTTGGCGTTCATATAGCACTGCTGTTGATAATGGGTGGAGGAACTTTAAGTGCTGCAGGGAGCTTTAAAGGTTCAGTCACTGTGCCTCAGGGGCTGAATTTTGTTGTAGGAGACGTTCTCGGTCCTACCGGCTTTCTTTCCTTTCCAACTGATGCTTTTAATACAGAGATTCATGTCAACAGATTCTCTATGGATTATTATGAAAGTGGGGAGGTTTCACAGTTTCACACCGATCTTTCCCTCTTGAACATGGATGGAAAAGAAGTAATGAGGAAAACAATTAGTGTAAACGACCCTTTAAGATATGATGGTATCACCATATACCAGACGGATTGGAGTATTTCAGCTCTGCAAATTCTCAAGGACAATGAAGGACCTTATAACTTGGCTATGGCACCTCTAAAGATCAATGGAGATAAGAAACTTTATGGTACTTTTCTACCGGTTGGAGATGTTAACTCTCCTGATGTTAAAGGAATATCTATGCTTGCTCGTGACCTGCAGTCAATTGTCCTTTATGATAAGGAAGGGAAATTTGCAGGAGTTAGACGACCTAATTCAAAGCTCCCAATCAACATTGACGGCTCAGAAATTGTCGTTGTGGATGCAATAGGCAGTAGTGGCTTGGACTTGAAGACTGATCCTGGCGTGCCAGTTGTATATGCTGGATTTGGTGCTCTCATGCTCACTACTTGCATCAGCTATTTATCTCATTCACAGATATGGGCCTTACAAGATGGCACAACAGTCGTTATTGGAGGGAAGACTAACAGAGCTAAGTTAGAGTTTCCGGACGAGATGAACCTCTTGCTTGACAAAATCCCTGAAATAGTTGAATCATCATCTCTATCTAAGCAAACTGATAGCATGGTTAGCTAG

Protein sequence

>Msa0646340

MCHMMSLRTPMNQCLLKVPTFHPLFKFNRTHTHHNTLSFTINCCNLKNKGKNNNLLSQKIVLSESSPPPLTQENDDINSGNVPASSKNQKGPYGVVKKLSKKVLQILSNLPMAIGEMFTIAFLMGLGTFIDQGEKPEFYFQNYPEDHPVLGFFTWRWIFFLGFDHMYSAPIFLAMLALLGASLIACTYTTQLPLIKVSKRWSFMHSAEVIRKQEFSESLPRASIQDVGTILMGAGYEVFLKGPTLYAFRGLAGRLAPVGVHIALLLIMGGGTLSAAGSFKGSVTVPQGLNFVVGDVLGPTGFLSFPTDAFNTEIHVNRFSMDYYESGEVSQFHTDLSLLNMDGKEVMRKTISVNDPLRYDGITIYQTDWSISALQILKDNEGPYNLAMAPLKINGDKKLYGTFLPVGDVNSPDVKGISMLARDLQSIVLYDKEGKFAGVRRPNSKLPINIDGSEIVVVDAIGSSGLDLKTDPGVPVVYAGFGALMLTTCISYLSHSQIWALQDGTTVVIGGKTNRAKLEFPDEMNLLLDKIPEIVESSSLSKQTDSMVS*