AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0528740


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0528740 MtrunA17_Chr4g0042701 96.377 276 8 1 1 274 1 276 0.0 544
Msa0528740 MtrunA17_Chr3g0120751 30.396 227 142 9 37 248 43 268 1.02e-17 82.8
Msa0528740 MtrunA17_Chr7g0246961 31.944 216 127 7 55 255 8 218 1.42e-12 67.4
Msa0528740 MtrunA17_Chr1g0188461 32.530 166 98 6 85 242 38 197 7.19e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0528740 AT1G14030.1 60.079 253 91 3 23 273 24 268 1.03e-102 308
Msa0528740 AT3G07670.1 28.972 214 142 8 44 248 63 275 5.12e-14 72.4

Find 184 sgRNAs with CRISPR-Local

Find 266 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGATCATCGTCCCCTTTAA+AGG 0.157833 4_1:+1671753 Msa0528730:three_prime_UTR
TTATACAACTATACTGAATT+TGG 0.182459 4_1:-1671532 Msa0528740:three_prime_UTR
AAAGTTCTGCTGCAACTTTC+TGG 0.203760 4_1:+1672883 Msa0528730:three_prime_UTR
TGACACTGGATGACTTCTTC+TGG 0.230073 4_1:-1673728 Msa0528740:CDS
GGGTACCGATGCTTTCTTAT+TGG 0.244903 4_1:-1672501 Msa0528740:three_prime_UTR
TGCATTCAATCAACCTTTAA+AGG 0.269412 4_1:-1671766 Msa0528740:three_prime_UTR
AGATTGCTCTTGCATACTTA+TGG 0.269547 4_1:-1671354 Msa0528740:three_prime_UTR
ACTACTAACCTTGAAGTTCT+TGG 0.282877 4_1:+1673985 None:intergenic
GATGACTTCTTCTGGGCATT+TGG 0.290567 4_1:-1673720 Msa0528740:CDS
CTCCAGCAGTTCAAACCTTC+TGG 0.294167 4_1:-1674433 Msa0528740:CDS
CAAAATACTTCTAATCTTGC+AGG 0.301113 4_1:-1671897 Msa0528740:three_prime_UTR
ACCAGCAAGGGCGGATTTGC+AGG 0.304466 4_1:+1672388 Msa0528730:three_prime_UTR
TTGCTTGATATGCATCAAAA+TGG 0.313563 4_1:+1671090 Msa0528730:CDS
CATCTTTGCAAGCCTCTATA+TGG 0.317158 4_1:-1671477 Msa0528740:three_prime_UTR
CTTTCTGGCTCTGATACATT+TGG 0.328912 4_1:+1672898 Msa0528730:three_prime_UTR
GGATTTATCCACAACCTCTT+AGG 0.337946 4_1:+1674287 None:intergenic
TTGACAGAAAGGGGCTCCTT+AGG 0.339783 4_1:+1673122 Msa0528730:three_prime_UTR
GCAGAGTTGGCTCTGGACTA+TGG 0.343115 4_1:-1672716 Msa0528740:three_prime_UTR
ATGCAAGAGCAATCTGAAAA+TGG 0.345318 4_1:+1671362 Msa0528730:three_prime_UTR
TTCCAGAAGGTTTGAACTGC+TGG 0.346946 4_1:+1674431 None:intergenic
GCCTGCAAATCCGCCCTTGC+TGG 0.360260 4_1:-1672389 Msa0528740:three_prime_UTR
TAGAAATAATCCTCCTCCTT+TGG 0.360561 4_1:-1671207 Msa0528740:three_prime_UTR
TAGCGCTCATGCAGGTATTC+CGG 0.363730 4_1:+1671024 Msa0528730:intron
AACAACAGTATGTCATTAAC+TGG 0.364991 4_1:+1671863 Msa0528730:three_prime_UTR
CACTGTTCAGAGACTCCATC+TGG 0.373117 4_1:-1672475 Msa0528740:three_prime_UTR
GCATTCAATCAACCTTTAAA+GGG 0.374835 4_1:-1671765 Msa0528740:three_prime_UTR
AGGGGCTCCTTAGGGCAAAT+AGG 0.381120 4_1:+1673131 Msa0528730:three_prime_UTR
TGCTCTTGCATACTTATGGT+TGG 0.387006 4_1:-1671350 Msa0528740:three_prime_UTR
GATCTTCGAGCAGAAAGAAT+TGG 0.388839 4_1:-1672007 Msa0528740:three_prime_UTR
GCTCTTGCATACTTATGGTT+GGG 0.392646 4_1:-1671349 Msa0528740:three_prime_UTR
AAACTGATTCTACAATATAT+TGG 0.395083 4_1:-1674127 Msa0528740:intron
TCACATGCGTTCACCGTAGA+AGG 0.396385 4_1:+1671789 Msa0528730:three_prime_UTR
TTCTGTCAAGGCAGGAGAAC+AGG 0.398267 4_1:-1673108 Msa0528740:CDS
CCATCTTATTGGACCGGAAA+AGG 0.405140 4_1:+1671058 Msa0528730:CDS
ACAAGCTGCAGGCATGTAAT+GGG 0.405918 4_1:+1671702 Msa0528730:three_prime_UTR
CTCAAGGATCTTGGACTTTG+CGG 0.406199 4_1:-1671949 Msa0528740:three_prime_UTR
GAAAGGAGGCTCAAGGATCT+TGG 0.407166 4_1:-1671958 Msa0528740:three_prime_UTR
GAAGAATGAATGTCTGAAAC+TGG 0.408078 4_1:-1673796 Msa0528740:CDS
TATGCATATCGATCTGCATT+TGG 0.408825 4_1:+1672683 Msa0528730:three_prime_UTR
GCTGTTGCTGCTTCAGAGAT+AGG 0.410978 4_1:-1674260 Msa0528740:CDS
TTCTCCTGCCTTGACAGAAA+GGG 0.411526 4_1:+1673112 Msa0528730:three_prime_UTR
TACAAGCTGCAGGCATGTAA+TGG 0.411895 4_1:+1671701 Msa0528730:three_prime_UTR
GCTACTGATTTGACAGAGAA+AGG 0.414228 4_1:+1674482 None:intergenic
CTGAAAATGGCTCCTTCCCT+CGG 0.419876 4_1:+1671375 Msa0528730:three_prime_UTR
GACACTGGATGACTTCTTCT+GGG 0.421868 4_1:-1673727 Msa0528740:CDS
ACTAGCTTTCACTGGTGTCT+TGG 0.428693 4_1:+1674379 None:intergenic
AGTGCTACTAATCTCAGATA+TGG 0.428804 4_1:+1672527 Msa0528730:three_prime_UTR
TCTGAAGCAGCAACAGCATC+AGG 0.439199 4_1:+1674266 None:intergenic
TTTCCTTGATATGGAAGAGC+TGG 0.441012 4_1:+1672941 Msa0528730:three_prime_UTR
TTTCTTGATAATATTCCAAC+TGG 0.444121 4_1:+1671977 Msa0528730:three_prime_UTR
TGTGATTCCACTTGCAGACT+TGG 0.445510 4_1:-1673649 Msa0528740:intron
TGTTGTTTCTTATTAGAGAA+AGG 0.454728 4_1:-1674199 Msa0528740:CDS
GGTCAAGAGAGGATTCTGTT+TGG 0.455743 4_1:-1674178 Msa0528740:CDS
AAAAGTCCATCTTATTGGAC+CGG 0.458534 4_1:+1671052 Msa0528730:CDS
ATAGTTTATTACCTGTTCAA+TGG 0.458942 4_1:+1672355 Msa0528730:intron
TGCAGGTGCCTAAGAGGTTG+TGG 0.460079 4_1:-1674295 Msa0528740:CDS
CATTTGGAATTCTCAGATCA+AGG 0.465096 4_1:-1673704 Msa0528740:CDS
GTTCTCCTGCCTTGACAGAA+AGG 0.468467 4_1:+1673111 Msa0528730:three_prime_UTR
CTTACTTGAGTAGAGTTATG+AGG 0.468781 4_1:-1671285 Msa0528740:three_prime_UTR
CAGATGAAGAGTTGGTACTT+TGG 0.474930 4_1:+1674511 None:intergenic
TGACAGAAAGGGGCTCCTTA+GGG 0.476680 4_1:+1673123 Msa0528730:three_prime_UTR
AGATATGGAAGCATCCCTTC+TGG 0.477120 4_1:+1672542 Msa0528730:three_prime_UTR
CTCCTCATTATCACGGCTCA+TGG 0.477204 4_1:+1672436 Msa0528730:three_prime_UTR
AAGCAATGCAGAGTTGGCTC+TGG 0.478444 4_1:-1672723 Msa0528740:three_prime_UTR
CTCCATCTGGGGTCATCTTG+AGG 0.481584 4_1:-1672462 Msa0528740:three_prime_UTR
GAAATATATGTTCCATATAG+AGG 0.482623 4_1:+1671465 Msa0528730:three_prime_UTR
AAGAGGCAAATCTAGATTCA+AGG 0.484970 4_1:-1672089 Msa0528740:three_prime_UTR
AAGAAGTCATCCAGTGTCAC+AGG 0.486528 4_1:+1673732 None:intergenic
GAAGAGCTCCAAGAACTTCA+AGG 0.489004 4_1:-1673993 Msa0528740:intron
GGTACCACACTAGCTTTCAC+TGG 0.496675 4_1:+1674371 None:intergenic
TCTGTTTGGAAGCATTACTT+TGG 0.496732 4_1:-1674164 Msa0528740:CDS
ACAACTATACTGAATTTGGT+GGG 0.497845 4_1:-1671528 Msa0528740:three_prime_UTR
GGGATTACCTATTTGCCCTA+AGG 0.498091 4_1:-1673138 Msa0528740:CDS
AAACAAAAGCAATGCAGAGT+TGG 0.498255 4_1:-1672729 Msa0528740:three_prime_UTR
TTATCACACAACCATTGAAC+AGG 0.500689 4_1:-1672366 Msa0528740:intron
CAGTTCAAACCTTCTGGAAG+TGG 0.501931 4_1:-1674427 Msa0528740:CDS
ACAGGTTCACGAAAAGAGAA+TGG 0.506682 4_1:+1671149 Msa0528730:CDS
CATGCCTGCAGCTTGTAAAG+TGG 0.508006 4_1:-1671695 Msa0528740:three_prime_UTR
TAGCCAGCTCTTCCATATCA+AGG 0.509727 4_1:-1672944 Msa0528740:three_prime_UTR
TATGCATACACCTTGACACT+GGG 0.512341 4_1:-1672668 Msa0528740:three_prime_UTR
TTACTTTGGTATTCTGCCAC+AGG 0.513694 4_1:-1674150 Msa0528740:CDS
TACAACTATACTGAATTTGG+TGG 0.513828 4_1:-1671529 Msa0528740:three_prime_UTR
TCATCCAGTGTCACAGGAGA+AGG 0.518798 4_1:+1673738 None:intergenic
GGTTTCTTCAGATGAAGAGT+TGG 0.524401 4_1:+1674503 None:intergenic
CTGTTGCTGCTTCAGAGATA+GGG 0.524576 4_1:-1674259 Msa0528740:CDS
TGGGTTGTAATAATTGTGGC+CGG 0.524912 4_1:+1671721 Msa0528730:three_prime_UTR
CACATTCATAACTGTGCAGT+TGG 0.525016 4_1:-1672787 Msa0528740:three_prime_UTR
GCATCTACAAACTCATTCCA+TGG 0.525256 4_1:-1671120 Msa0528740:three_prime_UTR
GGAAGCATCCCTTCTGGAAG+AGG 0.525978 4_1:+1672548 Msa0528730:three_prime_UTR
GCCCATGAGCCGTGATAATG+AGG 0.527832 4_1:-1672438 Msa0528740:three_prime_UTR
TGAAAATGGCTCCTTCCCTC+GGG 0.528010 4_1:+1671376 Msa0528730:three_prime_UTR
ATCTGAGATTAGTAGCACTA+GGG 0.531413 4_1:-1672523 Msa0528740:three_prime_UTR
GTTTGTAGATGCTGTGCGAC+AGG 0.534296 4_1:+1671131 Msa0528730:CDS
CTTGGACTTTGCGGTGAAAG+TGG 0.534968 4_1:-1671940 Msa0528740:three_prime_UTR
AGTTGGAATATTATCAAGAA+AGG 0.536592 4_1:-1671975 Msa0528740:three_prime_UTR
ATCGCAAATGTAGCCTTCTA+CGG 0.536666 4_1:-1671802 Msa0528740:three_prime_UTR
AGAATTGGAACTAGACCAGT+TGG 0.537321 4_1:-1671992 Msa0528740:three_prime_UTR
GTCAAATCAGTAGCTTCACT+TGG 0.539419 4_1:-1674473 Msa0528740:CDS
TCCTCATTATCACGGCTCAT+GGG 0.543503 4_1:+1672437 Msa0528730:three_prime_UTR
AACTATACTGAATTTGGTGG+GGG 0.544382 4_1:-1671526 Msa0528740:three_prime_UTR
TATGAAGTCAAAGGACCAGC+TGG 0.544591 4_1:-1673172 Msa0528740:CDS
TTCTTGTAGCCACTTCCAGA+AGG 0.547912 4_1:+1674418 None:intergenic
CTACAAACTCATTCCATGGA+AGG 0.551044 4_1:-1671116 Msa0528740:three_prime_UTR
GCAGGATCGCAAGCTGAAAG+AGG 0.551716 4_1:-1672106 Msa0528740:intron
TTGCGCCTCAGAATACAGCT+TGG 0.551987 4_1:+1672855 Msa0528730:three_prime_UTR
CACCTCAAGATGACCCCAGA+TGG 0.552036 4_1:+1672460 Msa0528730:three_prime_UTR
TCCCAAGAGAAAAGACCAGC+TGG 0.553440 4_1:+1673157 Msa0528730:three_prime_UTR
ACTGTTCAGAGACTCCATCT+GGG 0.560536 4_1:-1672474 Msa0528740:three_prime_UTR
CAGGTTCACGAAAAGAGAAT+GGG 0.560835 4_1:+1671150 Msa0528730:CDS
ATCAAAATGGAACCCTTCCA+TGG 0.561331 4_1:+1671103 Msa0528730:CDS
GAAAACCCCTCGGATGGACA+TGG 0.562273 4_1:+1673010 Msa0528730:intron
TTGCTGCTTCAGAGATAGGG+AGG 0.563350 4_1:-1674256 Msa0528740:CDS
TCTCCTGCCTTGACAGAAAG+GGG 0.563730 4_1:+1673113 Msa0528730:three_prime_UTR
GAGCCCCTTTCTGTCAAGGC+AGG 0.564419 4_1:-1673116 Msa0528740:CDS
TGGAAGTGGCTACAAGAAGA+AGG 0.567416 4_1:-1674413 Msa0528740:CDS
TATTAGAGAAAGGTCAAGAG+AGG 0.570783 4_1:-1674189 Msa0528740:CDS
CCCTCATGAGTGCCTTTGTG+AGG 0.571802 4_1:+1671236 Msa0528730:CDS
TAAGGAGCCCCTTTCTGTCA+AGG 0.573437 4_1:-1673120 Msa0528740:CDS
CAACTATACTGAATTTGGTG+GGG 0.573463 4_1:-1671527 Msa0528740:three_prime_UTR
ATGAAAAGAAACATATGAAG+AGG 0.574782 4_1:+1673072 Msa0528730:intron
ACAATGATTCGACGATAAGT+CGG 0.577569 4_1:-1671177 Msa0528740:three_prime_UTR
TATAACCGCCCTCTTCCAGA+AGG 0.578293 4_1:-1672557 Msa0528740:three_prime_UTR
CTCTAAGAACTTATGCCCGA+GGG 0.578429 4_1:-1671391 Msa0528740:three_prime_UTR
ATGATCATCTGTAGTCACTC+TGG 0.581191 4_1:+1673198 Msa0528730:three_prime_UTR
GATCATGCTTATGAAGTCAA+AGG 0.581508 4_1:-1673181 Msa0528740:CDS
ACCGTCGAAAACCCCTCGGA+TGG 0.582332 4_1:+1673004 Msa0528730:intron
AGATCTCATCAATTTGCCGC+AGG 0.582417 4_1:+1672025 Msa0528730:three_prime_UTR
ATTTGGAATTCTCAGATCAA+GGG 0.583610 4_1:-1673703 Msa0528740:CDS
TATCTGAGATTAGTAGCACT+AGG 0.584493 4_1:-1672524 Msa0528740:three_prime_UTR
GTTCATTCTCTATGTAATCA+CGG 0.584697 4_1:+1671600 Msa0528730:three_prime_UTR
ATATGCATACACCTTGACAC+TGG 0.586569 4_1:-1672669 Msa0528740:three_prime_UTR
TGTAGACAAACCAAAGGAGG+AGG 0.587728 4_1:+1671197 Msa0528730:CDS
CTCGGATATCCCCAGTGTCA+AGG 0.587901 4_1:+1672658 Msa0528730:three_prime_UTR
TATCTTATTAGCGCTCATGC+AGG 0.590245 4_1:+1671016 Msa0528730:intron
TACAAACTCATTCCATGGAA+GGG 0.592326 4_1:-1671115 Msa0528740:three_prime_UTR
GTTATTCCAGTGCAGGTCAG+AGG 0.594794 4_1:-1674015 Msa0528740:intron
ACAAAGGCACTCATGAGGGT+TGG 0.596296 4_1:-1671232 Msa0528740:three_prime_UTR
CCCTCACAAAGGCACTCATG+AGG 0.597403 4_1:-1671237 Msa0528740:three_prime_UTR
TAGCAGTCGGAATAAGAGAA+GGG 0.598131 4_1:-1672059 Msa0528740:three_prime_UTR
AAGAACTTATGCCCGAGGGA+AGG 0.599553 4_1:-1671387 Msa0528740:three_prime_UTR
GCAATCCAAGCTGTATTCTG+AGG 0.600078 4_1:-1672860 Msa0528740:three_prime_UTR
GTAGACGTTGCTGAGACCAA+TGG 0.600772 4_1:-1672611 Msa0528740:three_prime_UTR
TCAAGGCTTGCAATAGCAGT+CGG 0.600784 4_1:-1672072 Msa0528740:three_prime_UTR
CACACTTTGTTCCCTCACAA+AGG 0.600880 4_1:-1671248 Msa0528740:three_prime_UTR
CCTCACAAAGGCACTCATGA+GGG 0.602588 4_1:-1671236 Msa0528740:three_prime_UTR
TGGAATATTATCAAGAAAGG+AGG 0.602703 4_1:-1671972 Msa0528740:three_prime_UTR
GTTCTTACCAAGTCTGCAAG+TGG 0.608009 4_1:+1673642 None:intergenic
ATAGCAGTCGGAATAAGAGA+AGG 0.608578 4_1:-1672060 Msa0528740:three_prime_UTR
CCTCATGAGTGCCTTTGTGA+GGG 0.609759 4_1:+1671237 Msa0528730:CDS
TTATCAAGAAAGGAGGCTCA+AGG 0.609776 4_1:-1671965 Msa0528740:three_prime_UTR
AAAGCTAGTGTGGTACCAGA+AGG 0.610016 4_1:-1674365 Msa0528740:intron
TCTCTAAGAACTTATGCCCG+AGG 0.611187 4_1:-1671392 Msa0528740:three_prime_UTR
TGCTGCTTCAGAGATAGGGA+GGG 0.612119 4_1:-1674255 Msa0528740:CDS
GGGTTGTAATAATTGTGGCC+GGG 0.612240 4_1:+1671722 Msa0528730:three_prime_UTR
ACAAAGTGTGATGATTTGCT+AGG 0.614058 4_1:+1671261 Msa0528730:CDS
CATTGTAGACAAACCAAAGG+AGG 0.615228 4_1:+1671194 Msa0528730:CDS
ATACATCCATGTCCATCCGA+GGG 0.616731 4_1:-1673016 Msa0528740:three_prime_UTR
ACTGTTGTTTGTATCTCTTG+AGG 0.620279 4_1:-1671849 Msa0528740:three_prime_UTR
GGTGAAAGTGGTGATGTCCT+TGG 0.620946 4_1:-1671928 Msa0528740:three_prime_UTR
CATTCAATCAACCTTTAAAG+GGG 0.622188 4_1:-1671764 Msa0528740:three_prime_UTR
TCCTACCGTCGAAAACCCCT+CGG 0.622954 4_1:+1673000 Msa0528730:intron
AATACATCCATGTCCATCCG+AGG 0.624955 4_1:-1673017 Msa0528740:three_prime_UTR
GGTTGTGTGATAACCAGCAA+GGG 0.628035 4_1:+1672376 Msa0528730:three_prime_UTR
TGGTTGTGTGATAACCAGCA+AGG 0.629031 4_1:+1672375 Msa0528730:three_prime_UTR
AGCAGTCGGAATAAGAGAAG+GGG 0.636940 4_1:-1672058 Msa0528740:three_prime_UTR
AATCATTGTAGACAAACCAA+AGG 0.637419 4_1:+1671191 Msa0528730:CDS
GAAGCATCCCTTCTGGAAGA+GGG 0.639736 4_1:+1672549 Msa0528730:three_prime_UTR
ATACTAGCTCCTCATTATCA+CGG 0.640006 4_1:+1672429 Msa0528730:three_prime_UTR
CTGTAGTCACTCTGGCACTG+TGG 0.648083 4_1:+1673206 Msa0528730:three_prime_UTR
ATTGTAGAATCAGTTTCCTG+TGG 0.648786 4_1:+1674134 None:intergenic
GTAATGGGTTGTAATAATTG+TGG 0.651529 4_1:+1671717 Msa0528730:three_prime_UTR
ATAACCGCCCTCTTCCAGAA+GGG 0.651691 4_1:-1672556 Msa0528740:three_prime_UTR
TGATTCCAATAAGAAAGCAT+CGG 0.654051 4_1:+1672496 Msa0528730:three_prime_UTR
GACACCAGTGAAAGCTAGTG+TGG 0.671601 4_1:-1674375 Msa0528740:CDS
TCTGAGATTAGTAGCACTAG+GGG 0.673869 4_1:-1672522 Msa0528740:three_prime_UTR
CTGTTCAGAGACTCCATCTG+GGG 0.675062 4_1:-1672473 Msa0528740:three_prime_UTR
TGTGTGATAACCAGCAAGGG+CGG 0.678647 4_1:+1672379 Msa0528730:three_prime_UTR
ATGCATACACCTTGACACTG+GGG 0.698561 4_1:-1672667 Msa0528740:three_prime_UTR
GCATCCCTTCTGGAAGAGGG+CGG 0.703925 4_1:+1672552 Msa0528730:three_prime_UTR
TACATCCATGTCCATCCGAG+GGG 0.708677 4_1:-1673015 Msa0528740:three_prime_UTR
AACAACATAACAGACAACCA+TGG 0.720499 4_1:+1674215 None:intergenic
CTGAGATTAGTAGCACTAGG+GGG 0.740933 4_1:-1672521 Msa0528740:three_prime_UTR
TGTGTAGTAAGTTGACACCA+TGG 0.752669 4_1:-1674232 Msa0528740:CDS
TGAGGAGCTAGTATGCAAAG+CGG 0.776917 4_1:-1672420 Msa0528740:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATCAATATTTTAAAACAT+GGG + chr4_1:1671670-1671689 Msa0528730:three_prime_UTR 10.0%
!!! ATAATCAATATTTTAAAACA+TGG + chr4_1:1671671-1671690 Msa0528730:three_prime_UTR 10.0%
!!! TTTTGTATACATTATTTTGT+AGG + chr4_1:1674194-1674213 None:intergenic 15.0%
!!! AAACTGATTCTACAATATAT+TGG - chr4_1:1671480-1671499 Msa0528740:three_prime_UTR 20.0%
!!! TCATTTTCATTTTTTGTTGA+AGG + chr4_1:1672349-1672368 Msa0528730:intron 20.0%
!! ACATTTCCAAATTCAATTTA+TGG - chr4_1:1672368-1672387 Msa0528740:three_prime_UTR 20.0%
!!! TGCTTTTGTTTAAATCATAT+TGG + chr4_1:1672869-1672888 Msa0528730:three_prime_UTR 20.0%
!! TGTAATGAAATATATAGACA+CGG + chr4_1:1673347-1673366 None:intergenic 20.0%
!! TTATACAACTATACTGAATT+TGG - chr4_1:1674075-1674094 Msa0528740:intron 20.0%
!!! TTTTAAAAAGTCCATCTTAT+TGG + chr4_1:1674563-1674582 None:intergenic 20.0%
!!! TAGAAATGATGTTATTTTGC+AGG - chr4_1:1671295-1671314 Msa0528740:three_prime_UTR 25.0%
!!! TGTTGTTTCTTATTAGAGAA+AGG - chr4_1:1671408-1671427 Msa0528740:three_prime_UTR 25.0%
! TGATTCTACAATATATTGGT+GGG - chr4_1:1671484-1671503 Msa0528740:three_prime_UTR 25.0%
!! GAAATTGAGTTCTTTTCATA+TGG - chr4_1:1671546-1671565 Msa0528740:three_prime_UTR 25.0%
! AAGGAAAAAGCTTCTTATTA+GGG + chr4_1:1671853-1671872 Msa0528730:three_prime_UTR 25.0%
!! TCAACATCTATTAGTTTACA+AGG - chr4_1:1672202-1672221 Msa0528740:intron 25.0%
! AAAACAAGTAAGACTCAATT+TGG + chr4_1:1672296-1672315 Msa0528730:intron 25.0%
!! TTTTGTTGAAGGATATTGAT+GGG + chr4_1:1672338-1672357 Msa0528730:intron 25.0%
!! TTTTTGTTGAAGGATATTGA+TGG + chr4_1:1672339-1672358 Msa0528730:intron 25.0%
! TCTGATCCATAAATTGAATT+TGG + chr4_1:1672377-1672396 Msa0528730:three_prime_UTR 25.0%
! ATGAAAAGAAACATATGAAG+AGG + chr4_1:1672538-1672557 Msa0528730:three_prime_UTR 25.0%
! ATAGTTTATTACCTGTTCAA+TGG + chr4_1:1673255-1673274 None:intergenic 25.0%
! AGGTAATAAACTATACATTC+AGG - chr4_1:1673261-1673280 Msa0528740:intron 25.0%
! GGTAATAAACTATACATTCA+GGG - chr4_1:1673262-1673281 Msa0528740:intron 25.0%
!! TTTCTTGATAATATTCCAAC+TGG + chr4_1:1673633-1673652 None:intergenic 25.0%
! AGTTGGAATATTATCAAGAA+AGG - chr4_1:1673632-1673651 Msa0528740:intron 25.0%
!!! AAGATTAGAAGTATTTTGCA+AGG + chr4_1:1673708-1673727 None:intergenic 25.0%
! GAAATATATGTTCCATATAG+AGG + chr4_1:1674145-1674164 None:intergenic 25.0%
!!! ATTATTTTGTAGGAAACCAT+GGG + chr4_1:1674184-1674203 None:intergenic 25.0%
!!! TAAGATGGACTTTTTAAAAC+CGG - chr4_1:1674564-1674583 Msa0528740:CDS 25.0%
! TTCTCTTTTCACACAAACAA+GGG - chr4_1:1671056-1671075 Msa0528740:three_prime_UTR 30.0%
CTGATTCTACAATATATTGG+TGG - chr4_1:1671483-1671502 Msa0528740:three_prime_UTR 30.0%
! TTGAGTTCTTTTCATATGGT+TGG - chr4_1:1671550-1671569 Msa0528740:three_prime_UTR 30.0%
ATTCAGTTCATTCAAAGTTC+AGG + chr4_1:1671741-1671760 Msa0528730:three_prime_UTR 30.0%
TTGAATGAACTGAATTGAGT+AGG - chr4_1:1671746-1671765 Msa0528740:three_prime_UTR 30.0%
GAAGGAAAAAGCTTCTTATT+AGG + chr4_1:1671854-1671873 Msa0528730:three_prime_UTR 30.0%
! ATTTGGAATTCTCAGATCAA+GGG - chr4_1:1671904-1671923 Msa0528740:three_prime_UTR 30.0%
ACAGAAGAAGAGAAATGAAA+AGG + chr4_1:1671990-1672009 Msa0528730:three_prime_UTR 30.0%
CTTAAGAACATTAACTGATC+TGG + chr4_1:1672093-1672112 Msa0528730:three_prime_UTR 30.0%
GAGAGTTTCTCAATTAAAAC+CGG + chr4_1:1672256-1672275 Msa0528730:intron 30.0%
TTAATTGAGAAACTCTCCAA+AGG - chr4_1:1672259-1672278 Msa0528740:intron 30.0%
!! TTTGGATTAGTTTCTACCTT+TGG + chr4_1:1672278-1672297 Msa0528730:intron 30.0%
! ATGCTTCTTTTTCCTTGATA+TGG + chr4_1:1672678-1672697 Msa0528730:three_prime_UTR 30.0%
! TTTTCATGCTTCTCAATTCT+TGG - chr4_1:1672796-1672815 Msa0528740:three_prime_UTR 30.0%
CTACTTTGTCGTCAAAAAAA+GGG + chr4_1:1672980-1672999 Msa0528730:intron 30.0%
TCTACTTTGTCGTCAAAAAA+AGG + chr4_1:1672981-1673000 Msa0528730:intron 30.0%
! TGATTCCAATAAGAAAGCAT+CGG + chr4_1:1673114-1673133 Msa0528730:three_prime_UTR 30.0%
TATTCTCATTACCATCATGT+TGG + chr4_1:1673290-1673309 None:intergenic 30.0%
! ATTGCATTTTACGTAGTACA+TGG - chr4_1:1673412-1673431 Msa0528740:intron 30.0%
! TTGCATTTTACGTAGTACAT+GGG - chr4_1:1673413-1673432 Msa0528740:intron 30.0%
TGGAATATTATCAAGAAAGG+AGG - chr4_1:1673635-1673654 Msa0528740:intron 30.0%
CAAAATACTTCTAATCTTGC+AGG - chr4_1:1673710-1673729 Msa0528740:CDS 30.0%
AACAACAGTATGTCATTAAC+TGG + chr4_1:1673747-1673766 None:intergenic 30.0%
TGCATTCAATCAACCTTTAA+AGG - chr4_1:1673841-1673860 Msa0528740:CDS 30.0%
GCATTCAATCAACCTTTAAA+GGG - chr4_1:1673842-1673861 Msa0528740:CDS 30.0%
! CATTCAATCAACCTTTAAAG+GGG - chr4_1:1673843-1673862 Msa0528740:intron 30.0%
!! GTAATGGGTTGTAATAATTG+TGG + chr4_1:1673893-1673912 None:intergenic 30.0%
GTTCATTCTCTATGTAATCA+CGG + chr4_1:1674010-1674029 None:intergenic 30.0%
TACAACTATACTGAATTTGG+TGG - chr4_1:1674078-1674097 Msa0528740:intron 30.0%
ACAACTATACTGAATTTGGT+GGG - chr4_1:1674079-1674098 Msa0528740:intron 30.0%
CATGGGGAAAAAAGAAAAAT+AGG + chr4_1:1674167-1674186 None:intergenic 30.0%
!! CTATTTTTCTTTTTTCCCCA+TGG - chr4_1:1674165-1674184 Msa0528740:CDS 30.0%
!! TTATTTTGTAGGAAACCATG+GGG + chr4_1:1674183-1674202 None:intergenic 30.0%
!! CATTATTTTGTAGGAAACCA+TGG + chr4_1:1674185-1674204 None:intergenic 30.0%
AATCATTGTAGACAAACCAA+AGG + chr4_1:1674419-1674438 None:intergenic 30.0%
TTGCTTGATATGCATCAAAA+TGG + chr4_1:1674520-1674539 None:intergenic 30.0%
! CTTCTCTTTTCACACAAACA+AGG - chr4_1:1671055-1671074 Msa0528740:three_prime_UTR 35.0%
AACAACATAACAGACAACCA+TGG + chr4_1:1671395-1671414 Msa0528730:three_prime_UTR 35.0%
TATTAGAGAAAGGTCAAGAG+AGG - chr4_1:1671418-1671437 Msa0528740:three_prime_UTR 35.0%
!! TCTGTTTGGAAGCATTACTT+TGG - chr4_1:1671443-1671462 Msa0528740:three_prime_UTR 35.0%
ATTGTAGAATCAGTTTCCTG+TGG + chr4_1:1671476-1671495 Msa0528730:three_prime_UTR 35.0%
!!! ATTGGTGGGTTTCTTTTGTT+TGG - chr4_1:1671498-1671517 Msa0528740:three_prime_UTR 35.0%
! ATATGGTTGGTTGATTCAGT+TGG - chr4_1:1671563-1671582 Msa0528740:three_prime_UTR 35.0%
!! TGGTTGATTCAGTTGGTAAT+TGG - chr4_1:1671570-1671589 Msa0528740:three_prime_UTR 35.0%
ACTACTAACCTTGAAGTTCT+TGG + chr4_1:1671625-1671644 Msa0528730:three_prime_UTR 35.0%
TTCATTCAAAGTTCAGGATG+TGG + chr4_1:1671735-1671754 Msa0528730:three_prime_UTR 35.0%
! GAAGAATGAATGTCTGAAAC+TGG - chr4_1:1671811-1671830 Msa0528740:three_prime_UTR 35.0%
! CATTTGGAATTCTCAGATCA+AGG - chr4_1:1671903-1671922 Msa0528740:three_prime_UTR 35.0%
! CAACTAGATTTTCATTGCGA+AGG + chr4_1:1671940-1671959 Msa0528730:three_prime_UTR 35.0%
! TCTAAAATTATGTCCACGCT+AGG + chr4_1:1672069-1672088 Msa0528730:three_prime_UTR 35.0%
! AGGACTTCTTTTGTATGTGA+AGG - chr4_1:1672222-1672241 Msa0528740:intron 35.0%
! GGACTTCTTTTGTATGTGAA+GGG - chr4_1:1672223-1672242 Msa0528740:intron 35.0%
GATCATGCTTATGAAGTCAA+AGG - chr4_1:1672426-1672445 Msa0528740:three_prime_UTR 35.0%
!!! CAGTTGGTAACTTTTACTGT+AGG - chr4_1:1672836-1672855 Msa0528740:three_prime_UTR 35.0%
AAACAAAAGCAATGCAGAGT+TGG - chr4_1:1672878-1672897 Msa0528740:three_prime_UTR 35.0%
TATGCATATCGATCTGCATT+TGG + chr4_1:1672927-1672946 Msa0528730:three_prime_UTR 35.0%
! AGTGCTACTAATCTCAGATA+TGG + chr4_1:1673083-1673102 Msa0528730:intron 35.0%
! TATCTGAGATTAGTAGCACT+AGG - chr4_1:1673083-1673102 Msa0528740:three_prime_UTR 35.0%
! ATCTGAGATTAGTAGCACTA+GGG - chr4_1:1673084-1673103 Msa0528740:three_prime_UTR 35.0%
ATACTAGCTCCTCATTATCA+CGG + chr4_1:1673181-1673200 Msa0528730:three_prime_UTR 35.0%
TTATCACACAACCATTGAAC+AGG - chr4_1:1673241-1673260 Msa0528740:intron 35.0%
GTACTACGTAAAATGCAATG+AGG + chr4_1:1673411-1673430 None:intergenic 35.0%
GAACAAAGCATACAAATTGC+AGG - chr4_1:1673483-1673502 Msa0528740:intron 35.0%
AAGAGGCAAATCTAGATTCA+AGG - chr4_1:1673518-1673537 Msa0528740:intron 35.0%
! ACTGTTGTTTGTATCTCTTG+AGG - chr4_1:1673758-1673777 Msa0528740:CDS 35.0%
GGATGAAAAAACTGAACACT+TGG - chr4_1:1673779-1673798 Msa0528740:CDS 35.0%
! CAACTATACTGAATTTGGTG+GGG - chr4_1:1674080-1674099 Msa0528740:intron 35.0%
! AACTATACTGAATTTGGTGG+GGG - chr4_1:1674081-1674100 Msa0528740:intron 35.0%
! ATTTGGTGGGGGAAAAAATA+AGG - chr4_1:1674092-1674111 Msa0528740:intron 35.0%
TTTGGTGGGGGAAAAAATAA+GGG - chr4_1:1674093-1674112 Msa0528740:intron 35.0%
ATGCAAGAGCAATCTGAAAA+TGG + chr4_1:1674248-1674267 None:intergenic 35.0%
AGATTGCTCTTGCATACTTA+TGG - chr4_1:1674253-1674272 Msa0528740:CDS 35.0%
CTTACTTGAGTAGAGTTATG+AGG - chr4_1:1674322-1674341 Msa0528740:CDS 35.0%
!! ACAAAGTGTGATGATTTGCT+AGG + chr4_1:1674349-1674368 None:intergenic 35.0%
TAGAAATAATCCTCCTCCTT+TGG - chr4_1:1674400-1674419 Msa0528740:CDS 35.0%
ACAATGATTCGACGATAAGT+CGG - chr4_1:1674430-1674449 Msa0528740:CDS 35.0%
TACAAACTCATTCCATGGAA+GGG - chr4_1:1674492-1674511 Msa0528740:CDS 35.0%
AAAAGTCCATCTTATTGGAC+CGG + chr4_1:1674558-1674577 None:intergenic 35.0%
! ATGGCTACAATCTTTTCTGG+AGG - chr4_1:1671020-1671039 Msa0528740:three_prime_UTR 40.0%
!! CAGATGAAGAGTTGGTACTT+TGG + chr4_1:1671099-1671118 Msa0528730:CDS 40.0%
GGTTTCTTCAGATGAAGAGT+TGG + chr4_1:1671107-1671126 Msa0528730:CDS 40.0%
!! GCTACTGATTTGACAGAGAA+AGG + chr4_1:1671128-1671147 Msa0528730:CDS 40.0%
GTCAAATCAGTAGCTTCACT+TGG - chr4_1:1671134-1671153 Msa0528740:three_prime_UTR 40.0%
!! TTATTTTGCAGGTGCCTAAG+AGG - chr4_1:1671306-1671325 Msa0528740:three_prime_UTR 40.0%
GGATTTATCCACAACCTCTT+AGG + chr4_1:1671323-1671342 Msa0528730:three_prime_UTR 40.0%
! TGTGTAGTAAGTTGACACCA+TGG - chr4_1:1671375-1671394 Msa0528740:three_prime_UTR 40.0%
TTACTTTGGTATTCTGCCAC+AGG - chr4_1:1671457-1671476 Msa0528740:three_prime_UTR 40.0%
GTAATTGGTTATTCCAGTGC+AGG - chr4_1:1671585-1671604 Msa0528740:three_prime_UTR 40.0%
TGTCTATGATATTCCTAGCG+TGG - chr4_1:1672053-1672072 Msa0528740:three_prime_UTR 40.0%
ATGATCATCTGTAGTCACTC+TGG + chr4_1:1672412-1672431 Msa0528730:three_prime_UTR 40.0%
TTTCCTTGATATGGAAGAGC+TGG + chr4_1:1672669-1672688 Msa0528730:three_prime_UTR 40.0%
!! CTTTCTGGCTCTGATACATT+TGG + chr4_1:1672712-1672731 Msa0528730:three_prime_UTR 40.0%
AAAGTTCTGCTGCAACTTTC+TGG + chr4_1:1672727-1672746 Msa0528730:three_prime_UTR 40.0%
CACATTCATAACTGTGCAGT+TGG - chr4_1:1672820-1672839 Msa0528740:three_prime_UTR 40.0%
ATATGCATACACCTTGACAC+TGG - chr4_1:1672938-1672957 Msa0528740:three_prime_UTR 40.0%
TATGCATACACCTTGACACT+GGG - chr4_1:1672939-1672958 Msa0528740:three_prime_UTR 40.0%
GTCAAAAAAAGGGTCTGACT+CGG + chr4_1:1672970-1672989 Msa0528730:intron 40.0%
TGCTGTCTGAGAAAAACCAT+TGG + chr4_1:1673015-1673034 Msa0528730:intron 40.0%
! TCTGAGATTAGTAGCACTAG+GGG - chr4_1:1673085-1673104 Msa0528740:three_prime_UTR 40.0%
ATAGCAGTCGGAATAAGAGA+AGG - chr4_1:1673547-1673566 Msa0528740:intron 40.0%
TAGCAGTCGGAATAAGAGAA+GGG - chr4_1:1673548-1673567 Msa0528740:intron 40.0%
AAGGGGAAAAAATGATCCTG+CGG - chr4_1:1673566-1673585 Msa0528740:intron 40.0%
GATCTTCGAGCAGAAAGAAT+TGG - chr4_1:1673600-1673619 Msa0528740:intron 40.0%
AGAATTGGAACTAGACCAGT+TGG - chr4_1:1673615-1673634 Msa0528740:intron 40.0%
TTATCAAGAAAGGAGGCTCA+AGG - chr4_1:1673642-1673661 Msa0528740:intron 40.0%
! AGTATTTTGCAAGGTCTCCA+AGG + chr4_1:1673699-1673718 None:intergenic 40.0%
ATCGCAAATGTAGCCTTCTA+CGG - chr4_1:1673805-1673824 Msa0528740:CDS 40.0%
TTGATCATCGTCCCCTTTAA+AGG + chr4_1:1673857-1673876 None:intergenic 40.0%
! CGATGATCAAGTTTTTGACC+CGG - chr4_1:1673867-1673886 Msa0528740:intron 40.0%
TGGGTTGTAATAATTGTGGC+CGG + chr4_1:1673889-1673908 None:intergenic 40.0%
! TTTTCCACTTTACAAGCTGC+AGG + chr4_1:1673919-1673938 None:intergenic 40.0%
CATCTTTGCAAGCCTCTATA+TGG - chr4_1:1674130-1674149 Msa0528740:CDS 40.0%
TGCTCTTGCATACTTATGGT+TGG - chr4_1:1674257-1674276 Msa0528740:CDS 40.0%
GCTCTTGCATACTTATGGTT+GGG - chr4_1:1674258-1674277 Msa0528740:CDS 40.0%
CATTGTAGACAAACCAAAGG+AGG + chr4_1:1674416-1674435 None:intergenic 40.0%
CAGGTTCACGAAAAGAGAAT+GGG + chr4_1:1674460-1674479 None:intergenic 40.0%
ACAGGTTCACGAAAAGAGAA+TGG + chr4_1:1674461-1674480 None:intergenic 40.0%
GCATCTACAAACTCATTCCA+TGG - chr4_1:1674487-1674506 Msa0528740:CDS 40.0%
CTACAAACTCATTCCATGGA+AGG - chr4_1:1674491-1674510 Msa0528740:CDS 40.0%
ATCAAAATGGAACCCTTCCA+TGG + chr4_1:1674507-1674526 None:intergenic 40.0%
! GCAATTGTACAAGCCTTTTC+CGG - chr4_1:1674536-1674555 Msa0528740:CDS 40.0%
TTCCAGAAGGTTTGAACTGC+TGG + chr4_1:1671179-1671198 Msa0528730:CDS 45.0%
! CAGTTCAAACCTTCTGGAAG+TGG - chr4_1:1671180-1671199 Msa0528740:three_prime_UTR 45.0%
TTCTTGTAGCCACTTCCAGA+AGG + chr4_1:1671192-1671211 Msa0528730:CDS 45.0%
TGGAAGTGGCTACAAGAAGA+AGG - chr4_1:1671194-1671213 Msa0528740:three_prime_UTR 45.0%
!! ACTAGCTTTCACTGGTGTCT+TGG + chr4_1:1671231-1671250 Msa0528730:CDS 45.0%
AAAGCTAGTGTGGTACCAGA+AGG - chr4_1:1671242-1671261 Msa0528740:three_prime_UTR 45.0%
AGTGTGGTACCAGAAGGTTT+AGG - chr4_1:1671248-1671267 Msa0528740:three_prime_UTR 45.0%
! GGTACCAGAAGGTTTAGGAT+TGG - chr4_1:1671253-1671272 Msa0528740:three_prime_UTR 45.0%
GCAACCAATCCTAAACCTTC+TGG + chr4_1:1671260-1671279 Msa0528730:CDS 45.0%
! CTGTTGCTGCTTCAGAGATA+GGG - chr4_1:1671348-1671367 Msa0528740:three_prime_UTR 45.0%
GGTCAAGAGAGGATTCTGTT+TGG - chr4_1:1671429-1671448 Msa0528740:three_prime_UTR 45.0%
GAAGAGCTCCAAGAACTTCA+AGG - chr4_1:1671614-1671633 Msa0528740:three_prime_UTR 45.0%
! TTTTCCTTCTCCTGTGACAC+TGG - chr4_1:1671865-1671884 Msa0528740:three_prime_UTR 45.0%
AAGAAGTCATCCAGTGTCAC+AGG + chr4_1:1671878-1671897 Msa0528730:three_prime_UTR 45.0%
TGACACTGGATGACTTCTTC+TGG - chr4_1:1671879-1671898 Msa0528740:three_prime_UTR 45.0%
GACACTGGATGACTTCTTCT+GGG - chr4_1:1671880-1671899 Msa0528740:three_prime_UTR 45.0%
GATGACTTCTTCTGGGCATT+TGG - chr4_1:1671887-1671906 Msa0528740:three_prime_UTR 45.0%
TGTGATTCCACTTGCAGACT+TGG - chr4_1:1671958-1671977 Msa0528740:three_prime_UTR 45.0%
GTTCTTACCAAGTCTGCAAG+TGG + chr4_1:1671968-1671987 Msa0528730:three_prime_UTR 45.0%
TCTGTATCATGCAGCTGTAG+AGG - chr4_1:1672005-1672024 Msa0528740:three_prime_UTR 45.0%
GTATGTGAAGGGTCGTAAAC+CGG - chr4_1:1672234-1672253 Msa0528740:intron 45.0%
TATGAAGTCAAAGGACCAGC+TGG - chr4_1:1672435-1672454 Msa0528740:three_prime_UTR 45.0%
!!! ACCAGCTGGTCTTTTCTCTT+GGG - chr4_1:1672449-1672468 Msa0528740:three_prime_UTR 45.0%
GGGATTACCTATTTGCCCTA+AGG - chr4_1:1672469-1672488 Msa0528740:three_prime_UTR 45.0%
TTCTCCTGCCTTGACAGAAA+GGG + chr4_1:1672498-1672517 Msa0528730:three_prime_UTR 45.0%
AATACATCCATGTCCATCCG+AGG - chr4_1:1672590-1672609 Msa0528740:three_prime_UTR 45.0%
ATACATCCATGTCCATCCGA+GGG - chr4_1:1672591-1672610 Msa0528740:three_prime_UTR 45.0%
TAGCCAGCTCTTCCATATCA+AGG - chr4_1:1672663-1672682 Msa0528740:three_prime_UTR 45.0%
GCAATCCAAGCTGTATTCTG+AGG - chr4_1:1672747-1672766 Msa0528740:three_prime_UTR 45.0%
ATGCATACACCTTGACACTG+GGG - chr4_1:1672940-1672959 Msa0528740:three_prime_UTR 45.0%
!! AGATATGGAAGCATCCCTTC+TGG + chr4_1:1673068-1673087 Msa0528730:intron 45.0%
CTGAGATTAGTAGCACTAGG+GGG - chr4_1:1673086-1673105 Msa0528740:exon 45.0%
!! GGGTACCGATGCTTTCTTAT+TGG - chr4_1:1673106-1673125 Msa0528740:CDS 45.0%
ACTGTTCAGAGACTCCATCT+GGG - chr4_1:1673133-1673152 Msa0528740:CDS 45.0%
TCCTCATTATCACGGCTCAT+GGG + chr4_1:1673173-1673192 Msa0528730:three_prime_UTR 45.0%
TGAGGAGCTAGTATGCAAAG+CGG - chr4_1:1673187-1673206 Msa0528740:CDS 45.0%
GGTTGTGTGATAACCAGCAA+GGG + chr4_1:1673234-1673253 None:intergenic 45.0%
TGGTTGTGTGATAACCAGCA+AGG + chr4_1:1673235-1673254 None:intergenic 45.0%
CATTCAGGGTTCCAACATGA+TGG - chr4_1:1673276-1673295 Msa0528740:intron 45.0%
TCAAGGCTTGCAATAGCAGT+CGG - chr4_1:1673535-1673554 Msa0528740:intron 45.0%
AGCAGTCGGAATAAGAGAAG+GGG - chr4_1:1673549-1673568 Msa0528740:intron 45.0%
AGATCTCATCAATTTGCCGC+AGG + chr4_1:1673585-1673604 None:intergenic 45.0%
CTCAAGGATCTTGGACTTTG+CGG - chr4_1:1673658-1673677 Msa0528740:CDS 45.0%
GGGTTGTAATAATTGTGGCC+GGG + chr4_1:1673888-1673907 None:intergenic 45.0%
ACAAGCTGCAGGCATGTAAT+GGG + chr4_1:1673908-1673927 None:intergenic 45.0%
TACAAGCTGCAGGCATGTAA+TGG + chr4_1:1673909-1673928 None:intergenic 45.0%
! TCTCTAAGAACTTATGCCCG+AGG - chr4_1:1674215-1674234 Msa0528740:CDS 45.0%
! CTCTAAGAACTTATGCCCGA+GGG - chr4_1:1674216-1674235 Msa0528740:CDS 45.0%
CACACTTTGTTCCCTCACAA+AGG - chr4_1:1674359-1674378 Msa0528740:intron 45.0%
TGTAGACAAACCAAAGGAGG+AGG + chr4_1:1674413-1674432 None:intergenic 45.0%
CCATCTTATTGGACCGGAAA+AGG + chr4_1:1674552-1674571 None:intergenic 45.0%
! CCTTTTCCGGTCCAATAAGA+TGG - chr4_1:1674549-1674568 Msa0528740:CDS 45.0%
CTCCAGCAGTTCAAACCTTC+TGG - chr4_1:1671174-1671193 Msa0528740:three_prime_UTR 50.0%
GACACCAGTGAAAGCTAGTG+TGG - chr4_1:1671232-1671251 Msa0528740:three_prime_UTR 50.0%
!! GGTACCACACTAGCTTTCAC+TGG + chr4_1:1671239-1671258 Msa0528730:CDS 50.0%
! TCTGAAGCAGCAACAGCATC+AGG + chr4_1:1671344-1671363 Msa0528730:three_prime_UTR 50.0%
! GCTGTTGCTGCTTCAGAGAT+AGG - chr4_1:1671347-1671366 Msa0528740:three_prime_UTR 50.0%
! TTGCTGCTTCAGAGATAGGG+AGG - chr4_1:1671351-1671370 Msa0528740:three_prime_UTR 50.0%
! TGCTGCTTCAGAGATAGGGA+GGG - chr4_1:1671352-1671371 Msa0528740:three_prime_UTR 50.0%
GTTATTCCAGTGCAGGTCAG+AGG - chr4_1:1671592-1671611 Msa0528740:three_prime_UTR 50.0%
TCATCCAGTGTCACAGGAGA+AGG + chr4_1:1671872-1671891 Msa0528730:three_prime_UTR 50.0%
!!! GACCAGCTGGTCTTTTCTCT+TGG - chr4_1:1672448-1672467 Msa0528740:three_prime_UTR 50.0%
TCCCAAGAGAAAAGACCAGC+TGG + chr4_1:1672453-1672472 Msa0528730:three_prime_UTR 50.0%
TGACAGAAAGGGGCTCCTTA+GGG + chr4_1:1672487-1672506 Msa0528730:three_prime_UTR 50.0%
TTGACAGAAAGGGGCTCCTT+AGG + chr4_1:1672488-1672507 Msa0528730:three_prime_UTR 50.0%
TAAGGAGCCCCTTTCTGTCA+AGG - chr4_1:1672487-1672506 Msa0528740:three_prime_UTR 50.0%
TCTCCTGCCTTGACAGAAAG+GGG + chr4_1:1672497-1672516 Msa0528730:three_prime_UTR 50.0%
GTTCTCCTGCCTTGACAGAA+AGG + chr4_1:1672499-1672518 Msa0528730:three_prime_UTR 50.0%
TTCTGTCAAGGCAGGAGAAC+AGG - chr4_1:1672499-1672518 Msa0528740:three_prime_UTR 50.0%
TACATCCATGTCCATCCGAG+GGG - chr4_1:1672592-1672611 Msa0528740:three_prime_UTR 50.0%
TTGCGCCTCAGAATACAGCT+TGG + chr4_1:1672755-1672774 Msa0528730:three_prime_UTR 50.0%
! AAGCAATGCAGAGTTGGCTC+TGG - chr4_1:1672884-1672903 Msa0528740:three_prime_UTR 50.0%
GTAGACGTTGCTGAGACCAA+TGG - chr4_1:1672996-1673015 Msa0528740:three_prime_UTR 50.0%
TATAACCGCCCTCTTCCAGA+AGG - chr4_1:1673050-1673069 Msa0528740:three_prime_UTR 50.0%
ATAACCGCCCTCTTCCAGAA+GGG - chr4_1:1673051-1673070 Msa0528740:three_prime_UTR 50.0%
! GAAGCATCCCTTCTGGAAGA+GGG + chr4_1:1673061-1673080 Msa0528730:intron 50.0%
CACTGTTCAGAGACTCCATC+TGG - chr4_1:1673132-1673151 Msa0528740:CDS 50.0%
CTGTTCAGAGACTCCATCTG+GGG - chr4_1:1673134-1673153 Msa0528740:CDS 50.0%
CTCCTCATTATCACGGCTCA+TGG + chr4_1:1673174-1673193 Msa0528730:three_prime_UTR 50.0%
TGTGTGATAACCAGCAAGGG+CGG + chr4_1:1673231-1673250 None:intergenic 50.0%
GAAAGGAGGCTCAAGGATCT+TGG - chr4_1:1673649-1673668 Msa0528740:intron 50.0%
CTTGGACTTTGCGGTGAAAG+TGG - chr4_1:1673667-1673686 Msa0528740:CDS 50.0%
! GGTGAAAGTGGTGATGTCCT+TGG - chr4_1:1673679-1673698 Msa0528740:CDS 50.0%
TCACATGCGTTCACCGTAGA+AGG + chr4_1:1673821-1673840 None:intergenic 50.0%
CATGCCTGCAGCTTGTAAAG+TGG - chr4_1:1673912-1673931 Msa0528740:intron 50.0%
AAGAACTTATGCCCGAGGGA+AGG - chr4_1:1674220-1674239 Msa0528740:CDS 50.0%
TGAAAATGGCTCCTTCCCTC+GGG + chr4_1:1674234-1674253 None:intergenic 50.0%
CTGAAAATGGCTCCTTCCCT+CGG + chr4_1:1674235-1674254 None:intergenic 50.0%
CCTCATGAGTGCCTTTGTGA+GGG + chr4_1:1674373-1674392 None:intergenic 50.0%
!! CCTCACAAAGGCACTCATGA+GGG - chr4_1:1674371-1674390 Msa0528740:CDS 50.0%
!! ACAAAGGCACTCATGAGGGT+TGG - chr4_1:1674375-1674394 Msa0528740:CDS 50.0%
GTTTGTAGATGCTGTGCGAC+AGG + chr4_1:1674479-1674498 None:intergenic 50.0%
TAGCGCTCATGCAGGTATTC+CGG + chr4_1:1674586-1674605 None:intergenic 50.0%
TGCAGGTGCCTAAGAGGTTG+TGG - chr4_1:1671312-1671331 Msa0528740:three_prime_UTR 55.0%
CTGTAGTCACTCTGGCACTG+TGG + chr4_1:1672404-1672423 Msa0528730:three_prime_UTR 55.0%
AGGGGCTCCTTAGGGCAAAT+AGG + chr4_1:1672479-1672498 Msa0528730:three_prime_UTR 55.0%
GAAAACCCCTCGGATGGACA+TGG + chr4_1:1672600-1672619 Msa0528730:three_prime_UTR 55.0%
! TCCATCCGAGGGGTTTTCGA+CGG - chr4_1:1672602-1672621 Msa0528740:three_prime_UTR 55.0%
TCCTACCGTCGAAAACCCCT+CGG + chr4_1:1672610-1672629 Msa0528730:three_prime_UTR 55.0%
!! GCAGAGTTGGCTCTGGACTA+TGG - chr4_1:1672891-1672910 Msa0528740:three_prime_UTR 55.0%
CTCGGATATCCCCAGTGTCA+AGG + chr4_1:1672952-1672971 Msa0528730:three_prime_UTR 55.0%
!! GGAAGCATCCCTTCTGGAAG+AGG + chr4_1:1673062-1673081 Msa0528730:intron 55.0%
! CTCCATCTGGGGTCATCTTG+AGG - chr4_1:1673145-1673164 Msa0528740:CDS 55.0%
CACCTCAAGATGACCCCAGA+TGG + chr4_1:1673150-1673169 Msa0528730:three_prime_UTR 55.0%
! GCCCATGAGCCGTGATAATG+AGG - chr4_1:1673169-1673188 Msa0528740:CDS 55.0%
GCAGGATCGCAAGCTGAAAG+AGG - chr4_1:1673501-1673520 Msa0528740:intron 55.0%
!! CCCTCACAAAGGCACTCATG+AGG - chr4_1:1674370-1674389 Msa0528740:CDS 55.0%
CCCTCATGAGTGCCTTTGTG+AGG + chr4_1:1674374-1674393 None:intergenic 55.0%
GCTCTTCCTCTGACCTGCAC+TGG + chr4_1:1671601-1671620 Msa0528730:three_prime_UTR 60.0%
GAGCCCCTTTCTGTCAAGGC+AGG - chr4_1:1672491-1672510 Msa0528740:three_prime_UTR 60.0%
ACCGTCGAAAACCCCTCGGA+TGG + chr4_1:1672606-1672625 Msa0528730:three_prime_UTR 60.0%
! TCCGAGGGGTTTTCGACGGT+AGG - chr4_1:1672606-1672625 Msa0528740:three_prime_UTR 60.0%
! GCATCCCTTCTGGAAGAGGG+CGG + chr4_1:1673058-1673077 Msa0528730:intron 60.0%
! ACCAGCAAGGGCGGATTTGC+AGG + chr4_1:1673222-1673241 None:intergenic 60.0%
GCCTGCAAATCCGCCCTTGC+TGG - chr4_1:1673218-1673237 Msa0528740:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 1671020 1674609 1671020 ID=Msa0528740;Name=Msa0528740
chr4_1 mRNA 1671020 1674609 1671020 ID=Msa0528740-mRNA-1;Parent=Msa0528740;Name=Msa0528740-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.8|0.66|1|0.8|0.5|6|1843|281
chr4_1 exon 1671020 1672124 1671020 ID=Msa0528740-mRNA-1:exon:518;Parent=Msa0528740-mRNA-1
chr4_1 exon 1672367 1673233 1672367 ID=Msa0528740-mRNA-1:exon:517;Parent=Msa0528740-mRNA-1
chr4_1 exon 1673650 1673861 1673650 ID=Msa0528740-mRNA-1:exon:516;Parent=Msa0528740-mRNA-1
chr4_1 exon 1673994 1674022 1673994 ID=Msa0528740-mRNA-1:exon:515;Parent=Msa0528740-mRNA-1
chr4_1 exon 1674128 1674359 1674128 ID=Msa0528740-mRNA-1:exon:514;Parent=Msa0528740-mRNA-1
chr4_1 exon 1674366 1674609 1674366 ID=Msa0528740-mRNA-1:exon:513;Parent=Msa0528740-mRNA-1
chr4_1 CDS 1674366 1674609 1674366 ID=Msa0528740-mRNA-1:cds;Parent=Msa0528740-mRNA-1
chr4_1 CDS 1674128 1674359 1674128 ID=Msa0528740-mRNA-1:cds;Parent=Msa0528740-mRNA-1
chr4_1 CDS 1673994 1674022 1673994 ID=Msa0528740-mRNA-1:cds;Parent=Msa0528740-mRNA-1
chr4_1 CDS 1673650 1673861 1673650 ID=Msa0528740-mRNA-1:cds;Parent=Msa0528740-mRNA-1
chr4_1 CDS 1673105 1673233 1673105 ID=Msa0528740-mRNA-1:cds;Parent=Msa0528740-mRNA-1
chr4_1 three_prime_UTR 1672367 1673104 1672367 ID=Msa0528740-mRNA-1:three_prime_utr;Parent=Msa0528740-mRNA-1
chr4_1 three_prime_UTR 1671020 1672124 1671020 ID=Msa0528740-mRNA-1:three_prime_utr;Parent=Msa0528740-mRNA-1
Gene Sequence

>Msa0528740

ATGGCTACAATCTTTTCTGGAGGTTCAGTTTCACTCTTCTCTTTTCACACAAACAAGGGTAAATCATCTTTTGCAACCAAAGTACCAACTCTTCATCTGAAGAAACCTTTCTCTGTCAAATCAGTAGCTTCACTTGGAACTGAAACATCACTGTCTCCAGCAGTTCAAACCTTCTGGAAGTGGCTACAAGAAGAAGGTGTTATCACTGCCAAGACACCAGTGAAAGCTAGTGTGGTACCAGAAGGATTGGTTGCACTCAAAGATATTTCTAGAAATGATGTTATTTTGCAGGTGCCTAAGAGGTTGTGGATAAATCCTGATGCTGTTGCTGCTTCAGAGATAGGGAGGGTGTGTAGTAAGTTGACACCATGGTTGTCTGTTATGTTGTTTCTTATTAGAGAAAGGTCAAGAGAGGATTCTGTTTGGAAGCATTACTTTGGTATTCTGCCACAGGAAACTGATTCTACAATATATTGGTCAGAGGAAGAGCTCCAAGAACTTCAAGGTACTCAACTTCTGAACACAACACTGTCTGTGAAAGAATATGTGAAGAATGAATGTCTGAAACTGGAAAAAGAAATCATTCTCCCTAATAAGAAGCTTTTTCCTTCTCCTGTGACACTGGATGACTTCTTCTGGGCATTTGGAATTCTCAGATCAAGGGCATTTTCTCGCCTTCGCAATGAAAATCTAGTTGTGATTCCACTTGCAGACTTGATTAACCACAGTGCCAGAGTGACTACAGATGATCATGCTTATGAAGTCAAAGGACCAGCTGGTCTTTTCTCTTGGGATTACCTATTTGCCCTAAGGAGCCCCTTTCTGTCAAGGCAGGAGAACAGGTGA

Protein sequence

>Msa0528740

MATIFSGGSVSLFSFHTNKGKSSFATKVPTLHLKKPFSVKSVASLGTETSLSPAVQTFWKWLQEEGVITAKTPVKASVVPEGLVALKDISRNDVILQVPKRLWINPDAVAASEIGRVCSKLTPWLSVMLFLIRERSREDSVWKHYFGILPQETDSTIYWSEEELQELQGTQLLNTTLSVKEYVKNECLKLEKEIILPNKKLFPSPVTLDDFFWAFGILRSRAFSRLRNENLVVIPLADLINHSARVTTDDHAYEVKGPAGLFSWDYLFALRSPFLSRQENR*