AlfalfaGEDB | Msa1375410

M. sativa cultivar zhongmu-4 / Msa1375410

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363
PFAM: PF13812.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375410	XP_013447053.1	93.764	433	21	2	1	430	1	430	0.0	811

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375410	sp\|Q9SZL5\|PP356_ARATH	56.870	262	97	3	170	430	56	302	5.43e-94	288

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375410	A0A072U5E3	93.764	433	21	2	1	430	1	430	0.0	811

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0134180	Msa1375410	0.804200	2.421781e-49	-8.615850e-47
Msa0474950	Msa1375410	0.800923	1.147771e-48	-8.615850e-47
Msa0688410	Msa1375410	0.945483	2.805651e-104	-8.615850e-47
Msa0702340	Msa1375410	0.805707	1.171999e-49	-8.615850e-47
Msa0702660	Msa1375410	0.804876	1.750050e-49	-8.615850e-47
Msa0930780	Msa1375410	0.802857	4.597143e-49	-8.615850e-47
Msa1091520	Msa1375410	0.806313	8.738630e-50	-8.615850e-47
Msa1224840	Msa1375410	0.803144	4.009843e-49	-8.615850e-47
Msa1252190	Msa1375410	0.806176	9.343096e-50	-8.615850e-47
Msa1292830	Msa1375410	0.817365	3.424787e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375410	MtrunA17_Chr8g0387011	93.764	433	21	2	1	430	1	430	0.0	811
Msa1375410	MtrunA17_Chr5g0403821	80.275	436	54	4	1	430	1	410	0.0	670
Msa1375410	MtrunA17_Chr1g0193501	37.500	184	112	3	243	423	93	276	1.44e-36	135
Msa1375410	MtrunA17_Chr6g0481981	34.524	168	107	1	242	406	262	429	5.79e-30	120
Msa1375410	MtrunA17_Chr6g0481981	31.818	154	102	1	244	394	159	312	5.97e-19	89.0
Msa1375410	MtrunA17_Chr6g0481981	25.806	155	112	1	244	395	194	348	1.22e-14	75.5
Msa1375410	MtrunA17_Chr1g0168761	30.097	206	127	3	210	408	322	517	8.35e-28	115
Msa1375410	MtrunA17_Chr1g0168761	28.485	165	115	1	246	407	313	477	1.86e-16	81.6
Msa1375410	MtrunA17_Chr1g0168761	24.731	186	102	2	260	407	257	442	9.44e-16	79.3
Msa1375410	MtrunA17_Chr1g0168761	30.556	144	100	0	264	407	159	302	1.18e-14	75.9

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1375410	AT4G38150.2	56.870	262	97	3	170	430	56	302	5.52e-95	288
Msa1375410	AT4G38150.1	56.870	262	97	3	170	430	56	302	5.52e-95	288
Msa1375410	AT4G38150.3	56.870	262	97	3	170	430	56	302	5.52e-95	288
Msa1375410	AT5G03560.2	39.881	168	100	1	243	409	181	348	8.36e-38	141
Msa1375410	AT5G03560.4	39.881	168	100	1	243	409	181	348	8.36e-38	141
Msa1375410	AT5G03560.3	39.881	168	100	1	243	409	181	348	8.36e-38	141
Msa1375410	AT1G12775.1	36.842	152	93	1	246	394	247	398	5.81e-24	105
Msa1375410	AT1G12775.1	30.769	143	96	1	244	383	350	492	6.33e-21	95.9
Msa1375410	AT1G12775.1	27.711	166	117	1	245	407	316	481	1.58e-17	85.5
Msa1375410	AT1G12775.1	30.968	155	104	1	245	396	211	365	1.07e-15	79.7

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Find 121 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTCATCGGCATCTTG+AGG	0.595281	tig0019653:-129871	None:intergenic
AAAGACTTTCTTACCGTTTC+TGG	0.098621	tig0019653:-128937	None:intergenic
AAAGATGGCCTCCCAAATGG+AGG	0.600846	tig0019653:-130385	None:intergenic
AAATCTTCGCAAATTGATCT+TGG	0.348578	tig0019653:+129658	Msa1375410:CDS
AAATCTTCGCAAATTGGTCT+TGG	0.367816	tig0019653:+129589	Msa1375410:CDS
AAATTCATCGTCAGATTCTC+CGG	0.459652	tig0019653:-129287	None:intergenic
AAATTTGCTTAGAATTTAAA+AGG	0.213710	tig0019653:-129195	None:intergenic
AAGATGGCCTCCCAAATGGA+GGG	0.652997	tig0019653:-130384	None:intergenic
AAGTCGTCACATTTAGAGAA+TGG	0.539449	tig0019653:-130221	None:intergenic
AATAGAAATGAGGAAGGTTT+TGG	0.354510	tig0019653:+129352	Msa1375410:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CGTAGGGTTAATAAATTTGA+AGG	+	tig0019653:129163-129182	Msa1375410:CDS	30.0%
CAAATTGATCTTGGATTTCA+AGG	+	tig0019653:129520-129539	Msa1375410:CDS	30.0%
AAATCTTCGCAAATTGATCT+TGG	+	tig0019653:129658-129677	Msa1375410:CDS	30.0%
TTTCTCGATAAGTATAAGCT+TGG	+	tig0019653:129739-129758	Msa1375410:CDS	30.0%
CATCTTCTTGAAAATCTCAT+CGG	-	tig0019653:129884-129903	None:intergenic	30.0%
AGTTACACTGTTCTTATACA+AGG	+	tig0019653:130135-130154	Msa1375410:CDS	30.0%
AATGGAATTGAAGAAGCAAA+AGG	+	tig0019653:130276-130295	Msa1375410:CDS	30.0%
TATCAAGACATTAACAGGAA+AGG	+	tig0019653:130302-130321	Msa1375410:CDS	30.0%
ATCAAGACATTAACAGGAAA+GGG	+	tig0019653:130303-130322	Msa1375410:CDS	30.0%
ACAATGGCATAAAAATAGTC+TGG	-	tig0019653:130497-130516	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0019653	gene	128818	130747	128818	ID=Msa1375410;Name=Msa1375410
tig0019653	mRNA	128818	130747	128818	ID=Msa1375410-mRNA-1;Parent=Msa1375410;Name=Msa1375410-mRNA-1;_AED=0.00;_eAED=0.00;_QI=138\|1\|1\|1\|0\|0\|2\|310\|430
tig0019653	exon	128818	128945	128818	ID=Msa1375410-mRNA-1:exon:4412;Parent=Msa1375410-mRNA-1
tig0019653	exon	129135	130747	129135	ID=Msa1375410-mRNA-1:exon:4413;Parent=Msa1375410-mRNA-1
tig0019653	five_prime_UTR	128818	128945	128818	ID=Msa1375410-mRNA-1:five_prime_utr;Parent=Msa1375410-mRNA-1
tig0019653	five_prime_UTR	129135	129144	129135	ID=Msa1375410-mRNA-1:five_prime_utr;Parent=Msa1375410-mRNA-1
tig0019653	CDS	129145	130437	129145	ID=Msa1375410-mRNA-1:cds;Parent=Msa1375410-mRNA-1
tig0019653	three_prime_UTR	130438	130747	130438	ID=Msa1375410-mRNA-1:three_prime_utr;Parent=Msa1375410-mRNA-1

Gene Sequence

>Msa1375410

ATGACACCATTGTTGGTTCGTAGGGTTAATAAATTTGAAGGGTTAGTCTCCCTTTTAAATTCTAAGCAAATTTTGTCTCCATGGCTTATTACTATGCGCCATTTTAGCTTTAATGATAACCGTGGTGGCCGTAAAGCTGCTGCCGGAGAATCTGACGATGAATTTTTTCGTCAACGGGGAGACATGAGTTTTAATGATAATGGTGGCAATAGAAATGAGGAAGGTTTTGGTGTTCAACAACGTTCGGAGGAATTGAATCAAACTAGGGTTTTGAGAGGTCAGAAGCCAAGTAATCAACCTCCTTTGCATTCCCAAGAATATGATCGAGGTGGCCGTCGTCTGAAATTTGATGGAAACCGTGGCAATAGATCGTCGCAAATTGATCTTGGATTTCAAGGAAGAAATGTTGATGAAACTGGTAGAGATGTTGGTCGTCGTGGCAATAAATCTTCGCAAATTGGTCTTGGATTTCAGGGTAGAAATATTGGTAGAGATGGTGGTCGTCTTGGCAATAAATCTTCGCAAATTGATCTTGGACCTCAGGGTAGAAATGTTGCTGAAACTGATAGAGATGGTGGTCAGTCAGGAGATAGTTTTCTCGATAAGTATAAGCTTGGTTTTGATGATGAAGTAGGGAGTAAATCAGATGTTGAAGCAAGCAGCCAATTGGAAGAAGCAAGGTCGGTGAATTTGTCAAATTCCAATGAACCAGCGCAACAGTCTATGCCTCAAGATGCCGATGAGATTTTCAAGAAGATGAAGGAAACTGGTCTTATACCTAATGCAGTGGCTATGCTTGATGGTTTATGTAAAGATGGTAATGTTCAAGAAGCTTTGAAGCTTTTCGGTTTGATGCGGGAAAAGGGAACGATTCCGGAGATTGTCATTTACACTGCTGTAGTGGAGGGATACACAAAGGCACACAAGGCTGATGATGCTATAAGGATTTTCAGGAAAATGCAGAGTAATGGCATTTCACCAAATGCTTTTAGTTACACTGTTCTTATACAAGGACTCTACAAATGTAGCAGATTACAGGATGCTGTTGAATTTTGTGTAGAGATGTTAGAAGCAGGCCATTCTCTAAATGTGACGACTTTCGTTGGCTTGGTAGATGGTTTTTGCAAAGAAAATGGAATTGAAGAAGCAAAAGGTGTTATCAAGACATTAACAGGAAAGGGTTTTGCTTTTGATGAGAAAGCTGTTAGGGTGTTTTTGGACAAGAAAGCACCATTTTCACCCTCCATTTGGGAGGCCATCTTTGGGAAGAAAGCTCCACAGATGCCATTTTAA

Protein sequence

>Msa1375410

MTPLLVRRVNKFEGLVSLLNSKQILSPWLITMRHFSFNDNRGGRKAAAGESDDEFFRQRGDMSFNDNGGNRNEEGFGVQQRSEELNQTRVLRGQKPSNQPPLHSQEYDRGGRRLKFDGNRGNRSSQIDLGFQGRNVDETGRDVGRRGNKSSQIGLGFQGRNIGRDGGRLGNKSSQIDLGPQGRNVAETDRDGGQSGDSFLDKYKLGFDDEVGSKSDVEASSQLEEARSVNLSNSNEPAQQSMPQDADEIFKKMKETGLIPNAVAMLDGLCKDGNVQEALKLFGLMREKGTIPEIVIYTAVVEGYTKAHKADDAIRIFRKMQSNGISPNAFSYTVLIQGLYKCSRLQDAVEFCVEMLEAGHSLNVTTFVGLVDGFCKENGIEEAKGVIKTLTGKGFAFDEKAVRVFLDKKAPFSPSIWEAIFGKKAPQMPF*