AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1306530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1306530 MtrunA17_Chr8g0387011 90.129 233 17 2 1 230 1 230 6.37e-141 402
Msa1306530 MtrunA17_Chr5g0403821 72.103 233 39 3 1 230 1 210 2.62e-98 293
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 121 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAGACTTTCTTACCGTTTC+TGG 0.098621 8_4:+1484165 None:intergenic
GTCTGCTAATTTATTTAAAA+TGG 0.144535 8_4:+1482675 None:intergenic
GCAAATTGGTCTTGGATTTC+AGG 0.164548 8_4:-1483506 Msa1306530:CDS
CTTCTTTATAAAATTTAAAT+AGG 0.208771 8_4:+1482562 None:intergenic
AAATTTGCTTAGAATTTAAA+AGG 0.213710 8_4:+1483908 None:intergenic
TCCATTTGGGAGGCCATCTT+TGG 0.260119 8_4:-1482717 Msa1306530:three_prime_UTR
GGCAATAAATCTTCGCAAAT+TGG 0.289573 8_4:-1483520 Msa1306530:CDS
GGTTATCATTAAAGCTAAAA+TGG 0.297998 8_4:+1483860 None:intergenic
ATTCTCCGGCAGCAGCTTTA+CGG 0.324844 8_4:+1483830 None:intergenic
GGTGTTATCAAGACATTAAC+AGG 0.334603 8_4:-1482807 Msa1306530:three_prime_UTR
ACTTTCGTTGGCTTGGTAGA+TGG 0.335096 8_4:-1482864 Msa1306530:three_prime_UTR
GGATTTCAGGGTAGAAATAT+TGG 0.336407 8_4:-1483493 Msa1306530:CDS
CCGACCTTGCTTCTTCCAAT+TGG 0.341967 8_4:+1483296 None:intergenic
CGAAGGCTGTTTGCGTTAAT+CGG 0.344772 8_4:+1484198 None:intergenic
AAATCTTCGCAAATTGATCT+TGG 0.348578 8_4:-1483445 Msa1306530:CDS
TCCCAAATGGAGGGTGAAAA+TGG 0.351854 8_4:+1482729 None:intergenic
AATAGAAATGAGGAAGGTTT+TGG 0.354510 8_4:-1483751 Msa1306530:CDS
CTACAAATGTAGCAGATTAC+AGG 0.354953 8_4:-1482943 Msa1306530:three_prime_UTR
GGAAGAAATGTTGATGAAAC+TGG 0.365594 8_4:-1483562 Msa1306530:CDS
GGCCACCTCGATCATATTCT+TGG 0.366307 8_4:+1483647 None:intergenic
TGCAAAGGAGGTTGATTACT+TGG 0.366884 8_4:+1483673 None:intergenic
AAATCTTCGCAAATTGGTCT+TGG 0.367816 8_4:-1483514 Msa1306530:CDS
GCGGGAAAAGGGAACGATTC+CGG 0.377445 8_4:-1483105 Msa1306530:three_prime_UTR
ACAAGGCTGATGATGCTATA+AGG 0.384180 8_4:-1483037 Msa1306530:three_prime_UTR
AGATCGTCGCAAATTGATCT+TGG 0.387206 8_4:-1483592 Msa1306530:CDS
CAAATTGATCTTGGATTTCA+AGG 0.391395 8_4:-1483583 Msa1306530:CDS
CCATTTGGGAGGCCATCTTT+GGG 0.392463 8_4:-1482716 Msa1306530:three_prime_UTR
TTCAAGAAGATGAAGGAAAC+TGG 0.393436 8_4:-1483212 Msa1306530:exon
CGTAGGGTTAATAAAATTGA+AGG 0.398373 8_4:-1483940 Msa1306530:CDS
AATGCAGTGGCTATGCTTGA+TGG 0.408634 8_4:-1483179 Msa1306530:three_prime_UTR
CGGAGGAATTGAATCAAACT+AGG 0.410333 8_4:-1483714 Msa1306530:CDS
ATCAAGACATTAACAGGAAA+GGG 0.416729 8_4:-1482801 Msa1306530:three_prime_UTR
TCAAGCATAGCCACTGCATT+AGG 0.418952 8_4:+1483182 None:intergenic
TTTCGGTTTGATGCGGGAAA+AGG 0.419906 8_4:-1483117 Msa1306530:three_prime_UTR
GATAGAGATGGTGGTCAGTC+AGG 0.420393 8_4:-1483394 Msa1306530:CDS
AGACTGTTGCGCTGGTTCAT+TGG 0.421003 8_4:+1483259 None:intergenic
GTGTAATGTATGATTACATT+AGG 0.425456 8_4:-1482589 Msa1306530:three_prime_UTR
GCAAATTGATCTTGGACCTC+AGG 0.428080 8_4:-1483437 Msa1306530:CDS
TGGAGCTTTCTTCCCAAAGA+TGG 0.431489 8_4:+1482704 None:intergenic
GGCCGTCGTCTGAAATTTGA+TGG 0.445178 8_4:-1483628 Msa1306530:CDS
TGTTGAAGCAAGCAGCCAAT+TGG 0.445648 8_4:-1483311 Msa1306530:CDS
CATCCACATGACACCATTGT+TGG 0.449341 8_4:-1483965 Msa1306530:exon
ACAGTGTAACTAAAAGCATT+TGG 0.453156 8_4:+1482981 None:intergenic
AAATTCATCGTCAGATTCTC+CGG 0.459652 8_4:+1483816 None:intergenic
CCCAAAGATGGCCTCCCAAA+TGG 0.461784 8_4:+1482716 None:intergenic
TACAGGTTGTCTCTGATTCA+AGG 0.467305 8_4:+1484268 None:intergenic
CAAATTGGTCTTGGATTTCA+GGG 0.467586 8_4:-1483505 Msa1306530:CDS
TTTATTTAAAATGGCATCTG+TGG 0.474744 8_4:+1482684 None:intergenic
GGTAGAAATATTGGTAGAGA+TGG 0.476528 8_4:-1483484 Msa1306530:CDS
TCACTATTCAGTGGGACTAC+AGG 0.477134 8_4:+1484251 None:intergenic
TCGTCGCCGGCCACCAGAAA+CGG 0.482778 8_4:-1484178 Msa1306530:intron
TTCGGTTTGATGCGGGAAAA+GGG 0.484486 8_4:-1483116 Msa1306530:three_prime_UTR
GACACCATTGTTGGTTCGTA+GGG 0.488791 8_4:-1483956 Msa1306530:CDS
GTCTCTGATTCAAGGGCAGA+GGG 0.491523 8_4:+1484276 None:intergenic
TTTCTCGATAAGTATAAGCT+TGG 0.496796 8_4:-1483364 Msa1306530:CDS
AGTTACACTGTTCTTATACA+AGG 0.499632 8_4:-1482969 Msa1306530:three_prime_UTR
AATGGAATTGAAGAAGCAAA+AGG 0.499894 8_4:-1482828 Msa1306530:three_prime_UTR
TTCTTACCGTTTCTGGTGGC+CGG 0.501473 8_4:+1484172 None:intergenic
TTTCTGGTGGCCGGCGACGA+AGG 0.501745 8_4:+1484181 None:intergenic
CTTGATGGTTTATGTAAAGA+TGG 0.502179 8_4:-1483164 Msa1306530:three_prime_UTR
GCCACCTCGATCATATTCTT+GGG 0.507961 8_4:+1483648 None:intergenic
GCAGTGTAAATGACAATCTC+CGG 0.509766 8_4:+1483086 None:intergenic
TGACACCATTGTTGGTTCGT+AGG 0.511204 8_4:-1483957 Msa1306530:CDS
TGTGTAGAGATGTTAGAAGC+AGG 0.515949 8_4:-1482906 Msa1306530:three_prime_UTR
AGAAATATTGGTAGAGATGG+TGG 0.517152 8_4:-1483481 Msa1306530:CDS
TTCAGGAAAATGCAGAGTAA+TGG 0.518339 8_4:-1483011 Msa1306530:three_prime_UTR
GGTAGAGATGGTGGTCGTCT+TGG 0.520100 8_4:-1483472 Msa1306530:CDS
TGTCTCTGATTCAAGGGCAG+AGG 0.530446 8_4:+1484275 None:intergenic
GACTTTCTTACCGTTTCTGG+TGG 0.532045 8_4:+1484168 None:intergenic
CTAAATGTGACGACTTTCGT+TGG 0.535206 8_4:-1482876 Msa1306530:three_prime_UTR
TATCAAGACATTAACAGGAA+AGG 0.535590 8_4:-1482802 Msa1306530:three_prime_UTR
TGTGACGACTTTCGTTGGCT+TGG 0.537500 8_4:-1482871 Msa1306530:three_prime_UTR
TGTCATTTACACTGCTGTAG+TGG 0.538969 8_4:-1483078 Msa1306530:three_prime_UTR
AAGTCGTCACATTTAGAGAA+TGG 0.539449 8_4:+1482883 None:intergenic
ACGCAAACAGCCTTCGTCGC+CGG 0.539865 8_4:-1484191 Msa1306530:five_prime_UTR
AATTTGCTTAGAATTTAAAA+GGG 0.543930 8_4:+1483909 None:intergenic
CATTTACACTGCTGTAGTGG+AGG 0.556135 8_4:-1483075 Msa1306530:three_prime_UTR
CATCTTCTTGAAAATCTCAT+CGG 0.558879 8_4:+1483223 None:intergenic
GGAGGAATTGAATCAAACTA+GGG 0.561115 8_4:-1483713 Msa1306530:CDS
CAAATTGATCTTGGACCTCA+GGG 0.562191 8_4:-1483436 Msa1306530:CDS
CGGGGTTCAAACTCTTATGA+AGG 0.563022 8_4:+1482476 None:intergenic
GTAGGGTTAATAAAATTGAA+GGG 0.574128 8_4:-1483939 Msa1306530:CDS
TTCCATCAAATTTCAGACGA+CGG 0.581614 8_4:+1483626 None:intergenic
GGTGGCCGTAAAGCTGCTGC+CGG 0.589710 8_4:-1483835 Msa1306530:CDS
TGAGGCATAGACTGTTGCGC+TGG 0.594878 8_4:+1483251 None:intergenic
AAAATCTCATCGGCATCTTG+AGG 0.595281 8_4:+1483233 None:intergenic
TTAACCCTACGAACCAACAA+TGG 0.596743 8_4:+1483952 None:intergenic
AAAGATGGCCTCCCAAATGG+AGG 0.600846 8_4:+1482719 None:intergenic
ACAGGTTGTCTCTGATTCAA+GGG 0.601465 8_4:+1484269 None:intergenic
TAATGGTGGCAATAGAAATG+AGG 0.601499 8_4:-1483761 Msa1306530:CDS
GGTGGCAATAGAAATGAGGA+AGG 0.603306 8_4:-1483757 Msa1306530:CDS
GGTAGAGATGTTGGTCGTCG+TGG 0.604411 8_4:-1483541 Msa1306530:CDS
GATGAAACTGGTAGAGATGT+TGG 0.605069 8_4:-1483550 Msa1306530:CDS
GGGATACACAAAGGCACACA+AGG 0.605565 8_4:-1483054 Msa1306530:three_prime_UTR
AGTTGAGTTCACTATTCAGT+GGG 0.606328 8_4:+1484243 None:intergenic
CCAATTGGAAGAAGCAAGGT+CGG 0.609013 8_4:-1483296 Msa1306530:CDS
ATTTACACTGCTGTAGTGGA+GGG 0.610371 8_4:-1483074 Msa1306530:three_prime_UTR
GTAAACAGCAATCTAGTCAG+AGG 0.611082 8_4:+1482424 None:intergenic
TATTCTTGGGAATGCAAAGG+AGG 0.613904 8_4:+1483661 None:intergenic
AGCTTTAATGATAACCGTGG+TGG 0.616814 8_4:-1483853 Msa1306530:CDS
TTTAGCTTTAATGATAACCG+TGG 0.626517 8_4:-1483856 Msa1306530:CDS
TGGTCTTATACCTAATGCAG+TGG 0.628103 8_4:-1483192 Msa1306530:three_prime_UTR
CTGAAATTTGATGGAAACCG+TGG 0.629200 8_4:-1483619 Msa1306530:CDS
TGGTGTTCAACAACGTTCGG+AGG 0.633034 8_4:-1483731 Msa1306530:CDS
CAGTTGAGTTCACTATTCAG+TGG 0.633292 8_4:+1484242 None:intergenic
TGGCGCATAGTAATAAGCCA+TGG 0.634452 8_4:+1483880 None:intergenic
GCAGCCAATTGGAAGAAGCA+AGG 0.638935 8_4:-1483300 Msa1306530:CDS
TCATATTCTTGGGAATGCAA+AGG 0.643247 8_4:+1483658 None:intergenic
AAGATGGCCTCCCAAATGGA+GGG 0.652997 8_4:+1482720 None:intergenic
CAGCAGCTTTACGGCCACCA+CGG 0.657023 8_4:+1483839 None:intergenic
TGTAATCATACATTACACAA+TGG 0.669398 8_4:+1482594 None:intergenic
GCTGTTTGCGTTAATCGGCG+AGG 0.669402 8_4:+1484203 None:intergenic
CTTCATAAGAGTTTGAACCC+CGG 0.671341 8_4:-1482475 Msa1306530:three_prime_UTR
TTTGCGACGATCTATTGCCA+CGG 0.672402 8_4:+1483602 None:intergenic
CATTCCCAAGAATATGATCG+AGG 0.673598 8_4:-1483652 Msa1306530:CDS
TCAGCAACATTTCTACCCTG+AGG 0.676686 8_4:+1483421 None:intergenic
GTTGCTGAAACTGATAGAGA+TGG 0.677713 8_4:-1483406 Msa1306530:CDS
GAACCAACAATGGTGTCATG+TGG 0.687185 8_4:+1483962 None:intergenic
GCTGAAACTGATAGAGATGG+TGG 0.693019 8_4:-1483403 Msa1306530:CDS
TCCCAAGAATATGATCGAGG+TGG 0.704327 8_4:-1483649 Msa1306530:CDS
TGTAGTGGAGGGATACACAA+AGG 0.712002 8_4:-1483063 Msa1306530:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTCTTTATAAAATTTAAAT+AGG + chr8_4:1484104-1484123 None:intergenic 10.0%
!!! CTATTTAAATTTTATAAAGA+AGG - chr8_4:1484102-1484121 Msa1306530:intron 10.0%
!! CTTCTTTATAAAATTTAAAT+AGG + chr8_4:1484104-1484123 None:intergenic 10.0%
!!! CTATTTAAATTTTATAAAGA+AGG - chr8_4:1484102-1484121 Msa1306530:intron 10.0%
!!! AATTTGCTTAGAATTTAAAA+GGG + chr8_4:1482757-1482776 None:intergenic 15.0%
!!! AAATTTGCTTAGAATTTAAA+AGG + chr8_4:1482758-1482777 None:intergenic 15.0%
!! AATTGAATGAATTAAAAAAC+CGG + chr8_4:1484210-1484229 None:intergenic 15.0%
!!! AATTTGCTTAGAATTTAAAA+GGG + chr8_4:1482757-1482776 None:intergenic 15.0%
!!! AAATTTGCTTAGAATTTAAA+AGG + chr8_4:1482758-1482777 None:intergenic 15.0%
!! AATTGAATGAATTAAAAAAC+CGG + chr8_4:1484210-1484229 None:intergenic 15.0%
!! AAATTAACCAGAAAAAACAA+AGG + chr8_4:1482532-1482551 None:intergenic 20.0%
!! GTCTGCTAATTTATTTAAAA+TGG + chr8_4:1483991-1484010 None:intergenic 20.0%
!! ATTGAATGAATTAAAAAACC+GGG + chr8_4:1484209-1484228 None:intergenic 20.0%
!! TACATTTAAAAACGAAAACA+AGG + chr8_4:1484278-1484297 None:intergenic 20.0%
!! AAATTAACCAGAAAAAACAA+AGG + chr8_4:1482532-1482551 None:intergenic 20.0%
!! GTCTGCTAATTTATTTAAAA+TGG + chr8_4:1483991-1484010 None:intergenic 20.0%
!! ATTGAATGAATTAAAAAACC+GGG + chr8_4:1484209-1484228 None:intergenic 20.0%
!! TACATTTAAAAACGAAAACA+AGG + chr8_4:1484278-1484297 None:intergenic 20.0%
!!! ATCTTTTCCTTTGTTTTTTC+TGG - chr8_4:1482522-1482541 Msa1306530:three_prime_UTR 25.0%
! AAAAGAAAAGAAAATGAAGC+AGG + chr8_4:1482601-1482620 None:intergenic 25.0%
!! TGCTTCATTTTCTTTTCTTT+TGG - chr8_4:1482600-1482619 Msa1306530:three_prime_UTR 25.0%
! GTAGGGTTAATAAAATTGAA+GGG - chr8_4:1482724-1482743 Msa1306530:three_prime_UTR 25.0%
! GGTTATCATTAAAGCTAAAA+TGG + chr8_4:1482806-1482825 None:intergenic 25.0%
!!! GACATGAGTTTTAATGATAA+TGG - chr8_4:1482885-1482904 Msa1306530:three_prime_UTR 25.0%
!!! ATGAGTTTTAATGATAATGG+TGG - chr8_4:1482888-1482907 Msa1306530:three_prime_UTR 25.0%
!! TTTATTTAAAATGGCATCTG+TGG + chr8_4:1483982-1484001 None:intergenic 25.0%
! TGTAATCATACATTACACAA+TGG + chr8_4:1484072-1484091 None:intergenic 25.0%
! GTGTAATGTATGATTACATT+AGG - chr8_4:1484074-1484093 Msa1306530:intron 25.0%
!!! AGTTTGCCTGTTTTTTAAAT+AGG - chr8_4:1484132-1484151 Msa1306530:intron 25.0%
! CATTTGCCTATTTAAAAAAC+AGG + chr8_4:1484141-1484160 None:intergenic 25.0%
! TTGAATGAATTAAAAAACCG+GGG + chr8_4:1484208-1484227 None:intergenic 25.0%
!!! ATCTTTTCCTTTGTTTTTTC+TGG - chr8_4:1482522-1482541 Msa1306530:three_prime_UTR 25.0%
! AAAAGAAAAGAAAATGAAGC+AGG + chr8_4:1482601-1482620 None:intergenic 25.0%
!! TGCTTCATTTTCTTTTCTTT+TGG - chr8_4:1482600-1482619 Msa1306530:three_prime_UTR 25.0%
! GTAGGGTTAATAAAATTGAA+GGG - chr8_4:1482724-1482743 Msa1306530:three_prime_UTR 25.0%
! GGTTATCATTAAAGCTAAAA+TGG + chr8_4:1482806-1482825 None:intergenic 25.0%
!!! GACATGAGTTTTAATGATAA+TGG - chr8_4:1482885-1482904 Msa1306530:three_prime_UTR 25.0%
!!! ATGAGTTTTAATGATAATGG+TGG - chr8_4:1482888-1482907 Msa1306530:three_prime_UTR 25.0%
!! TTTATTTAAAATGGCATCTG+TGG + chr8_4:1483982-1484001 None:intergenic 25.0%
! TGTAATCATACATTACACAA+TGG + chr8_4:1484072-1484091 None:intergenic 25.0%
! GTGTAATGTATGATTACATT+AGG - chr8_4:1484074-1484093 Msa1306530:intron 25.0%
!!! AGTTTGCCTGTTTTTTAAAT+AGG - chr8_4:1484132-1484151 Msa1306530:intron 25.0%
! CATTTGCCTATTTAAAAAAC+AGG + chr8_4:1484141-1484160 None:intergenic 25.0%
! TTGAATGAATTAAAAAACCG+GGG + chr8_4:1484208-1484227 None:intergenic 25.0%
CGTAGGGTTAATAAAATTGA+AGG - chr8_4:1482723-1482742 Msa1306530:three_prime_UTR 30.0%
!! TTTAGCTTTAATGATAACCG+TGG - chr8_4:1482807-1482826 Msa1306530:three_prime_UTR 30.0%
!!! ACGATGAATTTTTTCGTCAA+CGG - chr8_4:1482859-1482878 Msa1306530:three_prime_UTR 30.0%
! AATAGAAATGAGGAAGGTTT+TGG - chr8_4:1482912-1482931 Msa1306530:three_prime_UTR 30.0%
CAAATTGATCTTGGATTTCA+AGG - chr8_4:1483080-1483099 Msa1306530:three_prime_UTR 30.0%
AAATCTTCGCAAATTGATCT+TGG - chr8_4:1483218-1483237 Msa1306530:exon 30.0%
TTTCTCGATAAGTATAAGCT+TGG - chr8_4:1483299-1483318 Msa1306530:CDS 30.0%
!!! TTGGTTTTGATGATGAAGTT+GGG - chr8_4:1483318-1483337 Msa1306530:CDS 30.0%
CATCTTCTTGAAAATCTCAT+CGG + chr8_4:1483443-1483462 None:intergenic 30.0%
!! TGAGATTTTCAAGAAGATGA+AGG - chr8_4:1483444-1483463 Msa1306530:CDS 30.0%
! CTTGATGGTTTATGTAAAGA+TGG - chr8_4:1483499-1483518 Msa1306530:CDS 30.0%
! ATGATGCTATAAGGATTTTC+AGG - chr8_4:1483635-1483654 Msa1306530:CDS 30.0%
!! ACAGTGTAACTAAAAGCATT+TGG + chr8_4:1483685-1483704 None:intergenic 30.0%
AGTTACACTGTTCTTATACA+AGG - chr8_4:1483694-1483713 Msa1306530:CDS 30.0%
! GATGGTTTTTGCAAAGAAAA+TGG - chr8_4:1483817-1483836 Msa1306530:CDS 30.0%
AATGGAATTGAAGAAGCAAA+AGG - chr8_4:1483835-1483854 Msa1306530:CDS 30.0%
TATCAAGACATTAACAGGAA+AGG - chr8_4:1483861-1483880 Msa1306530:CDS 30.0%
ATCAAGACATTAACAGGAAA+GGG - chr8_4:1483862-1483881 Msa1306530:CDS 30.0%
! TTTTGATGAGAAAGCTGTTA+GGG - chr8_4:1483891-1483910 Msa1306530:CDS 30.0%
ACAATGGCATAAAAATAGTC+TGG + chr8_4:1484056-1484075 None:intergenic 30.0%
CGTAGGGTTAATAAAATTGA+AGG - chr8_4:1482723-1482742 Msa1306530:three_prime_UTR 30.0%
!! TTTAGCTTTAATGATAACCG+TGG - chr8_4:1482807-1482826 Msa1306530:three_prime_UTR 30.0%
!!! ACGATGAATTTTTTCGTCAA+CGG - chr8_4:1482859-1482878 Msa1306530:three_prime_UTR 30.0%
! AATAGAAATGAGGAAGGTTT+TGG - chr8_4:1482912-1482931 Msa1306530:three_prime_UTR 30.0%
CAAATTGATCTTGGATTTCA+AGG - chr8_4:1483080-1483099 Msa1306530:three_prime_UTR 30.0%
AAATCTTCGCAAATTGATCT+TGG - chr8_4:1483218-1483237 Msa1306530:exon 30.0%
TTTCTCGATAAGTATAAGCT+TGG - chr8_4:1483299-1483318 Msa1306530:CDS 30.0%
!!! TTGGTTTTGATGATGAAGTT+GGG - chr8_4:1483318-1483337 Msa1306530:CDS 30.0%
CATCTTCTTGAAAATCTCAT+CGG + chr8_4:1483443-1483462 None:intergenic 30.0%
!! TGAGATTTTCAAGAAGATGA+AGG - chr8_4:1483444-1483463 Msa1306530:CDS 30.0%
! CTTGATGGTTTATGTAAAGA+TGG - chr8_4:1483499-1483518 Msa1306530:CDS 30.0%
! ATGATGCTATAAGGATTTTC+AGG - chr8_4:1483635-1483654 Msa1306530:CDS 30.0%
!! ACAGTGTAACTAAAAGCATT+TGG + chr8_4:1483685-1483704 None:intergenic 30.0%
AGTTACACTGTTCTTATACA+AGG - chr8_4:1483694-1483713 Msa1306530:CDS 30.0%
! GATGGTTTTTGCAAAGAAAA+TGG - chr8_4:1483817-1483836 Msa1306530:CDS 30.0%
AATGGAATTGAAGAAGCAAA+AGG - chr8_4:1483835-1483854 Msa1306530:CDS 30.0%
TATCAAGACATTAACAGGAA+AGG - chr8_4:1483861-1483880 Msa1306530:CDS 30.0%
ATCAAGACATTAACAGGAAA+GGG - chr8_4:1483862-1483881 Msa1306530:CDS 30.0%
! TTTTGATGAGAAAGCTGTTA+GGG - chr8_4:1483891-1483910 Msa1306530:CDS 30.0%
ACAATGGCATAAAAATAGTC+TGG + chr8_4:1484056-1484075 None:intergenic 30.0%
AGTTGAGTTCACTATTCAGT+GGG + chr8_4:1482423-1482442 None:intergenic 35.0%
AAAGACTTTCTTACCGTTTC+TGG + chr8_4:1482501-1482520 None:intergenic 35.0%
! CTAAGCAAATTTTGTCTCCA+TGG - chr8_4:1482766-1482785 Msa1306530:three_prime_UTR 35.0%
AAATTCATCGTCAGATTCTC+CGG + chr8_4:1482850-1482869 None:intergenic 35.0%
!!! CGATGAATTTTTTCGTCAAC+GGG - chr8_4:1482860-1482879 Msa1306530:three_prime_UTR 35.0%
!!! GATGAATTTTTTCGTCAACG+GGG - chr8_4:1482861-1482880 Msa1306530:three_prime_UTR 35.0%
TAATGGTGGCAATAGAAATG+AGG - chr8_4:1482902-1482921 Msa1306530:three_prime_UTR 35.0%
!!! TTTTGGTGTTCAACAACGTT+CGG - chr8_4:1482929-1482948 Msa1306530:three_prime_UTR 35.0%
GGAGGAATTGAATCAAACTA+GGG - chr8_4:1482950-1482969 Msa1306530:three_prime_UTR 35.0%
!!! AATCAAACTAGGGTTTTGAG+AGG - chr8_4:1482960-1482979 Msa1306530:three_prime_UTR 35.0%
TCATATTCTTGGGAATGCAA+AGG + chr8_4:1483008-1483027 None:intergenic 35.0%
TTCCATCAAATTTCAGACGA+CGG + chr8_4:1483040-1483059 None:intergenic 35.0%
! GGAAGAAATGTTGATGAAAC+TGG - chr8_4:1483101-1483120 Msa1306530:three_prime_UTR 35.0%
GGCAATAAATCTTCGCAAAT+TGG - chr8_4:1483143-1483162 Msa1306530:three_prime_UTR 35.0%
! AAATCTTCGCAAATTGGTCT+TGG - chr8_4:1483149-1483168 Msa1306530:three_prime_UTR 35.0%
!! CAAATTGGTCTTGGATTTCA+GGG - chr8_4:1483158-1483177 Msa1306530:three_prime_UTR 35.0%
GGATTTCAGGGTAGAAATAT+TGG - chr8_4:1483170-1483189 Msa1306530:three_prime_UTR 35.0%
GGTAGAAATATTGGTAGAGA+TGG - chr8_4:1483179-1483198 Msa1306530:three_prime_UTR 35.0%
AGAAATATTGGTAGAGATGG+TGG - chr8_4:1483182-1483201 Msa1306530:three_prime_UTR 35.0%
!!! CTTGGTTTTGATGATGAAGT+TGG - chr8_4:1483317-1483336 Msa1306530:CDS 35.0%
TTCAAGAAGATGAAGGAAAC+TGG - chr8_4:1483451-1483470 Msa1306530:CDS 35.0%
!!! CAAGAAGCTTTGAAGCTTTT+CGG - chr8_4:1483529-1483548 Msa1306530:CDS 35.0%
TTCAGGAAAATGCAGAGTAA+TGG - chr8_4:1483652-1483671 Msa1306530:CDS 35.0%
CTACAAATGTAGCAGATTAC+AGG - chr8_4:1483720-1483739 Msa1306530:CDS 35.0%
AAGTCGTCACATTTAGAGAA+TGG + chr8_4:1483783-1483802 None:intergenic 35.0%
! GGTGTTATCAAGACATTAAC+AGG - chr8_4:1483856-1483875 Msa1306530:CDS 35.0%
! CTTTTGATGAGAAAGCTGTT+AGG - chr8_4:1483890-1483909 Msa1306530:CDS 35.0%
AGTTGAGTTCACTATTCAGT+GGG + chr8_4:1482423-1482442 None:intergenic 35.0%
AAAGACTTTCTTACCGTTTC+TGG + chr8_4:1482501-1482520 None:intergenic 35.0%
! CTAAGCAAATTTTGTCTCCA+TGG - chr8_4:1482766-1482785 Msa1306530:three_prime_UTR 35.0%
AAATTCATCGTCAGATTCTC+CGG + chr8_4:1482850-1482869 None:intergenic 35.0%
!!! CGATGAATTTTTTCGTCAAC+GGG - chr8_4:1482860-1482879 Msa1306530:three_prime_UTR 35.0%
!!! GATGAATTTTTTCGTCAACG+GGG - chr8_4:1482861-1482880 Msa1306530:three_prime_UTR 35.0%
TAATGGTGGCAATAGAAATG+AGG - chr8_4:1482902-1482921 Msa1306530:three_prime_UTR 35.0%
!!! TTTTGGTGTTCAACAACGTT+CGG - chr8_4:1482929-1482948 Msa1306530:three_prime_UTR 35.0%
GGAGGAATTGAATCAAACTA+GGG - chr8_4:1482950-1482969 Msa1306530:three_prime_UTR 35.0%
!!! AATCAAACTAGGGTTTTGAG+AGG - chr8_4:1482960-1482979 Msa1306530:three_prime_UTR 35.0%
TCATATTCTTGGGAATGCAA+AGG + chr8_4:1483008-1483027 None:intergenic 35.0%
TTCCATCAAATTTCAGACGA+CGG + chr8_4:1483040-1483059 None:intergenic 35.0%
! GGAAGAAATGTTGATGAAAC+TGG - chr8_4:1483101-1483120 Msa1306530:three_prime_UTR 35.0%
GGCAATAAATCTTCGCAAAT+TGG - chr8_4:1483143-1483162 Msa1306530:three_prime_UTR 35.0%
! AAATCTTCGCAAATTGGTCT+TGG - chr8_4:1483149-1483168 Msa1306530:three_prime_UTR 35.0%
!! CAAATTGGTCTTGGATTTCA+GGG - chr8_4:1483158-1483177 Msa1306530:three_prime_UTR 35.0%
GGATTTCAGGGTAGAAATAT+TGG - chr8_4:1483170-1483189 Msa1306530:three_prime_UTR 35.0%
GGTAGAAATATTGGTAGAGA+TGG - chr8_4:1483179-1483198 Msa1306530:three_prime_UTR 35.0%
AGAAATATTGGTAGAGATGG+TGG - chr8_4:1483182-1483201 Msa1306530:three_prime_UTR 35.0%
!!! CTTGGTTTTGATGATGAAGT+TGG - chr8_4:1483317-1483336 Msa1306530:CDS 35.0%
TTCAAGAAGATGAAGGAAAC+TGG - chr8_4:1483451-1483470 Msa1306530:CDS 35.0%
!!! CAAGAAGCTTTGAAGCTTTT+CGG - chr8_4:1483529-1483548 Msa1306530:CDS 35.0%
TTCAGGAAAATGCAGAGTAA+TGG - chr8_4:1483652-1483671 Msa1306530:CDS 35.0%
CTACAAATGTAGCAGATTAC+AGG - chr8_4:1483720-1483739 Msa1306530:CDS 35.0%
AAGTCGTCACATTTAGAGAA+TGG + chr8_4:1483783-1483802 None:intergenic 35.0%
! GGTGTTATCAAGACATTAAC+AGG - chr8_4:1483856-1483875 Msa1306530:CDS 35.0%
! CTTTTGATGAGAAAGCTGTT+AGG - chr8_4:1483890-1483909 Msa1306530:CDS 35.0%
ACAGGTTGTCTCTGATTCAA+GGG + chr8_4:1482397-1482416 None:intergenic 40.0%
TACAGGTTGTCTCTGATTCA+AGG + chr8_4:1482398-1482417 None:intergenic 40.0%
CAGTTGAGTTCACTATTCAG+TGG + chr8_4:1482424-1482443 None:intergenic 40.0%
GCTTGATGCAACTGATTAAC+AGG - chr8_4:1482673-1482692 Msa1306530:three_prime_UTR 40.0%
TTAACCCTACGAACCAACAA+TGG + chr8_4:1482714-1482733 None:intergenic 40.0%
! AGCTTTAATGATAACCGTGG+TGG - chr8_4:1482810-1482829 Msa1306530:three_prime_UTR 40.0%
CGGAGGAATTGAATCAAACT+AGG - chr8_4:1482949-1482968 Msa1306530:three_prime_UTR 40.0%
! TGCAAAGGAGGTTGATTACT+TGG + chr8_4:1482993-1483012 None:intergenic 40.0%
TATTCTTGGGAATGCAAAGG+AGG + chr8_4:1483005-1483024 None:intergenic 40.0%
CATTCCCAAGAATATGATCG+AGG - chr8_4:1483011-1483030 Msa1306530:three_prime_UTR 40.0%
CTGAAATTTGATGGAAACCG+TGG - chr8_4:1483044-1483063 Msa1306530:three_prime_UTR 40.0%
AGATCGTCGCAAATTGATCT+TGG - chr8_4:1483071-1483090 Msa1306530:three_prime_UTR 40.0%
GATGAAACTGGTAGAGATGT+TGG - chr8_4:1483113-1483132 Msa1306530:three_prime_UTR 40.0%
!! GCAAATTGGTCTTGGATTTC+AGG - chr8_4:1483157-1483176 Msa1306530:three_prime_UTR 40.0%
CAAATTGATCTTGGACCTCA+GGG - chr8_4:1483227-1483246 Msa1306530:CDS 40.0%
GTTGCTGAAACTGATAGAGA+TGG - chr8_4:1483257-1483276 Msa1306530:CDS 40.0%
AAAATCTCATCGGCATCTTG+AGG + chr8_4:1483433-1483452 None:intergenic 40.0%
!! TGGTCTTATACCTAATGCAG+TGG - chr8_4:1483471-1483490 Msa1306530:CDS 40.0%
!! TGAAGCTTTTCGGTTTGATG+CGG - chr8_4:1483539-1483558 Msa1306530:CDS 40.0%
GCAGTGTAAATGACAATCTC+CGG + chr8_4:1483580-1483599 None:intergenic 40.0%
! TGTCATTTACACTGCTGTAG+TGG - chr8_4:1483585-1483604 Msa1306530:CDS 40.0%
! ATTTACACTGCTGTAGTGGA+GGG - chr8_4:1483589-1483608 Msa1306530:CDS 40.0%
! ACAAGGCTGATGATGCTATA+AGG - chr8_4:1483626-1483645 Msa1306530:CDS 40.0%
TGTGTAGAGATGTTAGAAGC+AGG - chr8_4:1483757-1483776 Msa1306530:CDS 40.0%
CTAAATGTGACGACTTTCGT+TGG - chr8_4:1483787-1483806 Msa1306530:CDS 40.0%
!! GAAAGCTGTTAGGGTGTTTT+TGG - chr8_4:1483900-1483919 Msa1306530:CDS 40.0%
! ACCATTTTCACCCTCCATTT+GGG - chr8_4:1483933-1483952 Msa1306530:CDS 40.0%
CTTCATAAGAGTTTGAACCC+CGG - chr8_4:1484188-1484207 Msa1306530:five_prime_UTR 40.0%
GTAAACAGCAATCTAGTCAG+AGG + chr8_4:1484242-1484261 None:intergenic 40.0%
!!! AAGGGCAGAGGGTTTTATTT+TGG + chr8_4:1482379-1482398 None:intergenic 40.0%
ACAGGTTGTCTCTGATTCAA+GGG + chr8_4:1482397-1482416 None:intergenic 40.0%
TACAGGTTGTCTCTGATTCA+AGG + chr8_4:1482398-1482417 None:intergenic 40.0%
CAGTTGAGTTCACTATTCAG+TGG + chr8_4:1482424-1482443 None:intergenic 40.0%
GCTTGATGCAACTGATTAAC+AGG - chr8_4:1482673-1482692 Msa1306530:three_prime_UTR 40.0%
TTAACCCTACGAACCAACAA+TGG + chr8_4:1482714-1482733 None:intergenic 40.0%
! AGCTTTAATGATAACCGTGG+TGG - chr8_4:1482810-1482829 Msa1306530:three_prime_UTR 40.0%
CGGAGGAATTGAATCAAACT+AGG - chr8_4:1482949-1482968 Msa1306530:three_prime_UTR 40.0%
! TGCAAAGGAGGTTGATTACT+TGG + chr8_4:1482993-1483012 None:intergenic 40.0%
TATTCTTGGGAATGCAAAGG+AGG + chr8_4:1483005-1483024 None:intergenic 40.0%
CATTCCCAAGAATATGATCG+AGG - chr8_4:1483011-1483030 Msa1306530:three_prime_UTR 40.0%
CTGAAATTTGATGGAAACCG+TGG - chr8_4:1483044-1483063 Msa1306530:three_prime_UTR 40.0%
AGATCGTCGCAAATTGATCT+TGG - chr8_4:1483071-1483090 Msa1306530:three_prime_UTR 40.0%
GATGAAACTGGTAGAGATGT+TGG - chr8_4:1483113-1483132 Msa1306530:three_prime_UTR 40.0%
!! GCAAATTGGTCTTGGATTTC+AGG - chr8_4:1483157-1483176 Msa1306530:three_prime_UTR 40.0%
CAAATTGATCTTGGACCTCA+GGG - chr8_4:1483227-1483246 Msa1306530:CDS 40.0%
GTTGCTGAAACTGATAGAGA+TGG - chr8_4:1483257-1483276 Msa1306530:CDS 40.0%
AAAATCTCATCGGCATCTTG+AGG + chr8_4:1483433-1483452 None:intergenic 40.0%
!! TGGTCTTATACCTAATGCAG+TGG - chr8_4:1483471-1483490 Msa1306530:CDS 40.0%
!! TGAAGCTTTTCGGTTTGATG+CGG - chr8_4:1483539-1483558 Msa1306530:CDS 40.0%
GCAGTGTAAATGACAATCTC+CGG + chr8_4:1483580-1483599 None:intergenic 40.0%
! TGTCATTTACACTGCTGTAG+TGG - chr8_4:1483585-1483604 Msa1306530:CDS 40.0%
! ATTTACACTGCTGTAGTGGA+GGG - chr8_4:1483589-1483608 Msa1306530:CDS 40.0%
! ACAAGGCTGATGATGCTATA+AGG - chr8_4:1483626-1483645 Msa1306530:CDS 40.0%
TGTGTAGAGATGTTAGAAGC+AGG - chr8_4:1483757-1483776 Msa1306530:CDS 40.0%
CTAAATGTGACGACTTTCGT+TGG - chr8_4:1483787-1483806 Msa1306530:CDS 40.0%
!! GAAAGCTGTTAGGGTGTTTT+TGG - chr8_4:1483900-1483919 Msa1306530:CDS 40.0%
! ACCATTTTCACCCTCCATTT+GGG - chr8_4:1483933-1483952 Msa1306530:CDS 40.0%
CTTCATAAGAGTTTGAACCC+CGG - chr8_4:1484188-1484207 Msa1306530:five_prime_UTR 40.0%
GTAAACAGCAATCTAGTCAG+AGG + chr8_4:1484242-1484261 None:intergenic 40.0%
TCACTATTCAGTGGGACTAC+AGG + chr8_4:1482415-1482434 None:intergenic 45.0%
!!! CGGCGAGGTTTAGCTTTTTT+AGG + chr8_4:1482448-1482467 None:intergenic 45.0%
CGAAGGCTGTTTGCGTTAAT+CGG + chr8_4:1482468-1482487 None:intergenic 45.0%
! GACTTTCTTACCGTTTCTGG+TGG + chr8_4:1482498-1482517 None:intergenic 45.0%
CATCCACATGACACCATTGT+TGG - chr8_4:1482698-1482717 Msa1306530:three_prime_UTR 45.0%
!! GAACCAACAATGGTGTCATG+TGG + chr8_4:1482704-1482723 None:intergenic 45.0%
!! TGACACCATTGTTGGTTCGT+AGG - chr8_4:1482706-1482725 Msa1306530:three_prime_UTR 45.0%
!! GACACCATTGTTGGTTCGTA+GGG - chr8_4:1482707-1482726 Msa1306530:three_prime_UTR 45.0%
TGGCGCATAGTAATAAGCCA+TGG + chr8_4:1482786-1482805 None:intergenic 45.0%
GGTGGCAATAGAAATGAGGA+AGG - chr8_4:1482906-1482925 Msa1306530:three_prime_UTR 45.0%
TCCCAAGAATATGATCGAGG+TGG - chr8_4:1483014-1483033 Msa1306530:three_prime_UTR 45.0%
GCCACCTCGATCATATTCTT+GGG + chr8_4:1483018-1483037 None:intergenic 45.0%
TTTGCGACGATCTATTGCCA+CGG + chr8_4:1483064-1483083 None:intergenic 45.0%
GCAAATTGATCTTGGACCTC+AGG - chr8_4:1483226-1483245 Msa1306530:CDS 45.0%
TCAGCAACATTTCTACCCTG+AGG + chr8_4:1483245-1483264 None:intergenic 45.0%
GCTGAAACTGATAGAGATGG+TGG - chr8_4:1483260-1483279 Msa1306530:CDS 45.0%
TGTTGAAGCAAGCAGCCAAT+TGG - chr8_4:1483352-1483371 Msa1306530:CDS 45.0%
CCAATTGGAAGAAGCAAGGT+CGG - chr8_4:1483367-1483386 Msa1306530:CDS 45.0%
TCAAGCATAGCCACTGCATT+AGG + chr8_4:1483484-1483503 None:intergenic 45.0%
AATGCAGTGGCTATGCTTGA+TGG - chr8_4:1483484-1483503 Msa1306530:CDS 45.0%
!! GAAGCTTTTCGGTTTGATGC+GGG - chr8_4:1483540-1483559 Msa1306530:CDS 45.0%
! TTTCGGTTTGATGCGGGAAA+AGG - chr8_4:1483546-1483565 Msa1306530:CDS 45.0%
! TTCGGTTTGATGCGGGAAAA+GGG - chr8_4:1483547-1483566 Msa1306530:CDS 45.0%
CATTTACACTGCTGTAGTGG+AGG - chr8_4:1483588-1483607 Msa1306530:CDS 45.0%
! TGTAGTGGAGGGATACACAA+AGG - chr8_4:1483600-1483619 Msa1306530:CDS 45.0%
!! ACTTTCGTTGGCTTGGTAGA+TGG - chr8_4:1483799-1483818 Msa1306530:CDS 45.0%
! CACCATTTTCACCCTCCATT+TGG - chr8_4:1483932-1483951 Msa1306530:CDS 45.0%
TCCCAAATGGAGGGTGAAAA+TGG + chr8_4:1483937-1483956 None:intergenic 45.0%
! ATTTTCACCCTCCATTTGGG+AGG - chr8_4:1483936-1483955 Msa1306530:CDS 45.0%
TGGAGCTTTCTTCCCAAAGA+TGG + chr8_4:1483962-1483981 None:intergenic 45.0%
CGGGGTTCAAACTCTTATGA+AGG + chr8_4:1484190-1484209 None:intergenic 45.0%
TCACTATTCAGTGGGACTAC+AGG + chr8_4:1482415-1482434 None:intergenic 45.0%
!!! CGGCGAGGTTTAGCTTTTTT+AGG + chr8_4:1482448-1482467 None:intergenic 45.0%
CGAAGGCTGTTTGCGTTAAT+CGG + chr8_4:1482468-1482487 None:intergenic 45.0%
! GACTTTCTTACCGTTTCTGG+TGG + chr8_4:1482498-1482517 None:intergenic 45.0%
CATCCACATGACACCATTGT+TGG - chr8_4:1482698-1482717 Msa1306530:three_prime_UTR 45.0%
!! GAACCAACAATGGTGTCATG+TGG + chr8_4:1482704-1482723 None:intergenic 45.0%
!! TGACACCATTGTTGGTTCGT+AGG - chr8_4:1482706-1482725 Msa1306530:three_prime_UTR 45.0%
!! GACACCATTGTTGGTTCGTA+GGG - chr8_4:1482707-1482726 Msa1306530:three_prime_UTR 45.0%
TGGCGCATAGTAATAAGCCA+TGG + chr8_4:1482786-1482805 None:intergenic 45.0%
GGTGGCAATAGAAATGAGGA+AGG - chr8_4:1482906-1482925 Msa1306530:three_prime_UTR 45.0%
TCCCAAGAATATGATCGAGG+TGG - chr8_4:1483014-1483033 Msa1306530:three_prime_UTR 45.0%
GCCACCTCGATCATATTCTT+GGG + chr8_4:1483018-1483037 None:intergenic 45.0%
TTTGCGACGATCTATTGCCA+CGG + chr8_4:1483064-1483083 None:intergenic 45.0%
GCAAATTGATCTTGGACCTC+AGG - chr8_4:1483226-1483245 Msa1306530:CDS 45.0%
TCAGCAACATTTCTACCCTG+AGG + chr8_4:1483245-1483264 None:intergenic 45.0%
GCTGAAACTGATAGAGATGG+TGG - chr8_4:1483260-1483279 Msa1306530:CDS 45.0%
TGTTGAAGCAAGCAGCCAAT+TGG - chr8_4:1483352-1483371 Msa1306530:CDS 45.0%
CCAATTGGAAGAAGCAAGGT+CGG - chr8_4:1483367-1483386 Msa1306530:CDS 45.0%
TCAAGCATAGCCACTGCATT+AGG + chr8_4:1483484-1483503 None:intergenic 45.0%
AATGCAGTGGCTATGCTTGA+TGG - chr8_4:1483484-1483503 Msa1306530:CDS 45.0%
!! GAAGCTTTTCGGTTTGATGC+GGG - chr8_4:1483540-1483559 Msa1306530:CDS 45.0%
! TTTCGGTTTGATGCGGGAAA+AGG - chr8_4:1483546-1483565 Msa1306530:CDS 45.0%
! TTCGGTTTGATGCGGGAAAA+GGG - chr8_4:1483547-1483566 Msa1306530:CDS 45.0%
CATTTACACTGCTGTAGTGG+AGG - chr8_4:1483588-1483607 Msa1306530:CDS 45.0%
! TGTAGTGGAGGGATACACAA+AGG - chr8_4:1483600-1483619 Msa1306530:CDS 45.0%
!! ACTTTCGTTGGCTTGGTAGA+TGG - chr8_4:1483799-1483818 Msa1306530:CDS 45.0%
! CACCATTTTCACCCTCCATT+TGG - chr8_4:1483932-1483951 Msa1306530:CDS 45.0%
TCCCAAATGGAGGGTGAAAA+TGG + chr8_4:1483937-1483956 None:intergenic 45.0%
! ATTTTCACCCTCCATTTGGG+AGG - chr8_4:1483936-1483955 Msa1306530:CDS 45.0%
TGGAGCTTTCTTCCCAAAGA+TGG + chr8_4:1483962-1483981 None:intergenic 45.0%
CGGGGTTCAAACTCTTATGA+AGG + chr8_4:1484190-1484209 None:intergenic 45.0%
GTCTCTGATTCAAGGGCAGA+GGG + chr8_4:1482390-1482409 None:intergenic 50.0%
TGTCTCTGATTCAAGGGCAG+AGG + chr8_4:1482391-1482410 None:intergenic 50.0%
!! TTCTTACCGTTTCTGGTGGC+CGG + chr8_4:1482494-1482513 None:intergenic 50.0%
ATTCTCCGGCAGCAGCTTTA+CGG + chr8_4:1482836-1482855 None:intergenic 50.0%
TGGTGTTCAACAACGTTCGG+AGG - chr8_4:1482932-1482951 Msa1306530:three_prime_UTR 50.0%
GGCCACCTCGATCATATTCT+TGG + chr8_4:1483019-1483038 None:intergenic 50.0%
! GGCCGTCGTCTGAAATTTGA+TGG - chr8_4:1483035-1483054 Msa1306530:three_prime_UTR 50.0%
! GATAGAGATGGTGGTCAGTC+AGG - chr8_4:1483269-1483288 Msa1306530:CDS 50.0%
GCAGCCAATTGGAAGAAGCA+AGG - chr8_4:1483363-1483382 Msa1306530:CDS 50.0%
CCGACCTTGCTTCTTCCAAT+TGG + chr8_4:1483370-1483389 None:intergenic 50.0%
!! AGACTGTTGCGCTGGTTCAT+TGG + chr8_4:1483407-1483426 None:intergenic 50.0%
! GGGATACACAAAGGCACACA+AGG - chr8_4:1483609-1483628 Msa1306530:CDS 50.0%
! TGTGACGACTTTCGTTGGCT+TGG - chr8_4:1483792-1483811 Msa1306530:CDS 50.0%
AAGATGGCCTCCCAAATGGA+GGG + chr8_4:1483946-1483965 None:intergenic 50.0%
AAAGATGGCCTCCCAAATGG+AGG + chr8_4:1483947-1483966 None:intergenic 50.0%
TCCATTTGGGAGGCCATCTT+TGG - chr8_4:1483946-1483965 Msa1306530:CDS 50.0%
CCATTTGGGAGGCCATCTTT+GGG - chr8_4:1483947-1483966 Msa1306530:CDS 50.0%
GTCTCTGATTCAAGGGCAGA+GGG + chr8_4:1482390-1482409 None:intergenic 50.0%
TGTCTCTGATTCAAGGGCAG+AGG + chr8_4:1482391-1482410 None:intergenic 50.0%
!! TTCTTACCGTTTCTGGTGGC+CGG + chr8_4:1482494-1482513 None:intergenic 50.0%
ATTCTCCGGCAGCAGCTTTA+CGG + chr8_4:1482836-1482855 None:intergenic 50.0%
TGGTGTTCAACAACGTTCGG+AGG - chr8_4:1482932-1482951 Msa1306530:three_prime_UTR 50.0%
GGCCACCTCGATCATATTCT+TGG + chr8_4:1483019-1483038 None:intergenic 50.0%
! GGCCGTCGTCTGAAATTTGA+TGG - chr8_4:1483035-1483054 Msa1306530:three_prime_UTR 50.0%
! GATAGAGATGGTGGTCAGTC+AGG - chr8_4:1483269-1483288 Msa1306530:CDS 50.0%
GCAGCCAATTGGAAGAAGCA+AGG - chr8_4:1483363-1483382 Msa1306530:CDS 50.0%
CCGACCTTGCTTCTTCCAAT+TGG + chr8_4:1483370-1483389 None:intergenic 50.0%
!! AGACTGTTGCGCTGGTTCAT+TGG + chr8_4:1483407-1483426 None:intergenic 50.0%
! GGGATACACAAAGGCACACA+AGG - chr8_4:1483609-1483628 Msa1306530:CDS 50.0%
! TGTGACGACTTTCGTTGGCT+TGG - chr8_4:1483792-1483811 Msa1306530:CDS 50.0%
AAGATGGCCTCCCAAATGGA+GGG + chr8_4:1483946-1483965 None:intergenic 50.0%
AAAGATGGCCTCCCAAATGG+AGG + chr8_4:1483947-1483966 None:intergenic 50.0%
TCCATTTGGGAGGCCATCTT+TGG - chr8_4:1483946-1483965 Msa1306530:CDS 50.0%
CCATTTGGGAGGCCATCTTT+GGG - chr8_4:1483947-1483966 Msa1306530:CDS 50.0%
GCTGTTTGCGTTAATCGGCG+AGG + chr8_4:1482463-1482482 None:intergenic 55.0%
GGTAGAGATGTTGGTCGTCG+TGG - chr8_4:1483122-1483141 Msa1306530:three_prime_UTR 55.0%
! GGTAGAGATGGTGGTCGTCT+TGG - chr8_4:1483191-1483210 Msa1306530:three_prime_UTR 55.0%
TGAGGCATAGACTGTTGCGC+TGG + chr8_4:1483415-1483434 None:intergenic 55.0%
GCGGGAAAAGGGAACGATTC+CGG - chr8_4:1483558-1483577 Msa1306530:CDS 55.0%
CCCAAAGATGGCCTCCCAAA+TGG + chr8_4:1483950-1483969 None:intergenic 55.0%
GCTGTTTGCGTTAATCGGCG+AGG + chr8_4:1482463-1482482 None:intergenic 55.0%
GGTAGAGATGTTGGTCGTCG+TGG - chr8_4:1483122-1483141 Msa1306530:three_prime_UTR 55.0%
! GGTAGAGATGGTGGTCGTCT+TGG - chr8_4:1483191-1483210 Msa1306530:three_prime_UTR 55.0%
TGAGGCATAGACTGTTGCGC+TGG + chr8_4:1483415-1483434 None:intergenic 55.0%
GCGGGAAAAGGGAACGATTC+CGG - chr8_4:1483558-1483577 Msa1306530:CDS 55.0%
CCCAAAGATGGCCTCCCAAA+TGG + chr8_4:1483950-1483969 None:intergenic 55.0%
ACGCAAACAGCCTTCGTCGC+CGG - chr8_4:1482472-1482491 Msa1306530:three_prime_UTR 60.0%
CAGCAGCTTTACGGCCACCA+CGG + chr8_4:1482827-1482846 None:intergenic 60.0%
ACGCAAACAGCCTTCGTCGC+CGG - chr8_4:1482472-1482491 Msa1306530:three_prime_UTR 60.0%
CAGCAGCTTTACGGCCACCA+CGG + chr8_4:1482827-1482846 None:intergenic 60.0%
! TTTCTGGTGGCCGGCGACGA+AGG + chr8_4:1482485-1482504 None:intergenic 65.0%
TCGTCGCCGGCCACCAGAAA+CGG - chr8_4:1482485-1482504 Msa1306530:three_prime_UTR 65.0%
GGTGGCCGTAAAGCTGCTGC+CGG - chr8_4:1482828-1482847 Msa1306530:three_prime_UTR 65.0%
! TTTCTGGTGGCCGGCGACGA+AGG + chr8_4:1482485-1482504 None:intergenic 65.0%
TCGTCGCCGGCCACCAGAAA+CGG - chr8_4:1482485-1482504 Msa1306530:three_prime_UTR 65.0%
GGTGGCCGTAAAGCTGCTGC+CGG - chr8_4:1482828-1482847 Msa1306530:three_prime_UTR 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 1482379 1484306 1482379 ID=Msa1306530;Name=Msa1306530
chr8_4 mRNA 1482379 1484306 1482379 ID=Msa1306530-mRNA-1;Parent=Msa1306530;Name=Msa1306530-mRNA-1;_AED=0.00;_eAED=0.00;_QI=138|1|1|1|0|0|2|843|252
chr8_4 exon 1482379 1483990 1482379 ID=Msa1306530-mRNA-1:exon:384;Parent=Msa1306530-mRNA-1
chr8_4 exon 1484179 1484306 1484179 ID=Msa1306530-mRNA-1:exon:383;Parent=Msa1306530-mRNA-1
chr8_4 five_prime_UTR 1484179 1484306 1484179 ID=Msa1306530-mRNA-1:five_prime_utr;Parent=Msa1306530-mRNA-1
chr8_4 five_prime_UTR 1483981 1483990 1483981 ID=Msa1306530-mRNA-1:five_prime_utr;Parent=Msa1306530-mRNA-1
chr8_4 CDS 1483222 1483980 1483222 ID=Msa1306530-mRNA-1:cds;Parent=Msa1306530-mRNA-1
chr8_4 three_prime_UTR 1482379 1483221 1482379 ID=Msa1306530-mRNA-1:three_prime_utr;Parent=Msa1306530-mRNA-1
Gene Sequence

>Msa1306530

ATGACACCATTGTTGGTTCGTAGGGTTAATAAAATTGAAGGGTTAGTCTCCCTTTTAAATTCTAAGCAAATTTTGTCTCCATGGCTTATTACTATGCGCCATTTTAGCTTTAATGATAACCGTGGTGGCCGTAAAGCTGCTGCCGGAGAATCTGACGATGAATTTTTTCGTCAACGGGGAGACATGAGTTTTAATGATAATGGTGGCAATAGAAATGAGGAAGGTTTTGGTGTTCAACAACGTTCGGAGGAATTGAATCAAACTAGGGTTTTGAGAGGTCAGAAGCCAAGTAATCAACCTCCTTTGCATTCCCAAGAATATGATCGAGGTGGCCGTCGTCTGAAATTTGATGGAAACCGTGGCAATAGATCGTCGCAAATTGATCTTGGATTTCAAGGAAGAAATGTTGATGAAACTGGTAGAGATGTTGGTCGTCGTGGCAATAAATCTTCGCAAATTGGTCTTGGATTTCAGGGTAGAAATATTGGTAGAGATGGTGGTCGTCTTGGCAATAAATCTTCGCAAATTGATCTTGGACCTCAGGGTAGAAATGTTGCTGAAACTGATAGAGATGGTGGTCAGTCAGGAGATAGTTTTCTCGATAAGTATAAGCTTGGTTTTGATGATGAAGTTGGGAGTAAATCAGATGTTGAAGCAAGCAGCCAATTGGAAGAAGCAAGGTCGGTGAATTGTCAAATTCCAATGAACCAGCGCAACAGTCTATGCCTCAAGATGCCGATGAGATTTTCAAGAAGATGA
Protein sequence

>Msa1306530

MTPLLVRRVNKIEGLVSLLNSKQILSPWLITMRHFSFNDNRGGRKAAAGESDDEFFRQRGDMSFNDNGGNRNEEGFGVQQRSEELNQTRVLRGQKPSNQPPLHSQEYDRGGRRLKFDGNRGNRSSQIDLGFQGRNVDETGRDVGRRGNKSSQIGLGFQGRNIGRDGGRLGNKSSQIDLGPQGRNVAETDRDGGQSGDSFLDKYKLGFDDEVGSKSDVEASSQLEEARSVNCQIPMNQRNSLCLKMPMRFSRR*