Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380380 | XP_013450239.1 | 94.615 | 130 | 7 | 0 | 1 | 130 | 1 | 130 | 1.12e-82 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380380 | sp|Q9FM54|FOLB2_ARATH | 65.079 | 126 | 43 | 1 | 2 | 126 | 4 | 129 | 8.31e-52 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380380 | A0A072U3F9 | 94.615 | 130 | 7 | 0 | 1 | 130 | 1 | 130 | 5.35e-83 | 248 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1380380 | Msa1410440 | 0.823550 | 1.304154e-53 | -8.615850e-47 |
| Msa1258710 | Msa1380380 | 0.802095 | 6.599189e-49 | -8.615850e-47 |
| Msa1266060 | Msa1380380 | 0.820853 | 5.506403e-53 | -8.615850e-47 |
| Msa1119070 | Msa1380380 | 0.994254 | 8.968278e-206 | -8.615850e-47 |
| Msa1119170 | Msa1380380 | 0.995033 | 2.103217e-212 | -8.615850e-47 |
| Msa0867060 | Msa1380380 | 0.816572 | 5.160142e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380380 | MtrunA17_Chr7g0267671 | 94.615 | 130 | 7 | 0 | 1 | 130 | 1 | 130 | 1.03e-86 | 248 |
| Msa1380380 | MtrunA17_Chr2g0322821 | 85.271 | 129 | 19 | 0 | 1 | 129 | 15 | 143 | 2.94e-79 | 230 |
| Msa1380380 | MtrunA17_Chr7g0267651 | 82.946 | 129 | 22 | 0 | 2 | 130 | 5 | 133 | 1.76e-74 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1380380 | AT5G62980.2 | 65.079 | 126 | 43 | 1 | 2 | 126 | 4 | 129 | 8.45e-53 | 163 |
| Msa1380380 | AT5G62980.1 | 65.079 | 126 | 43 | 1 | 2 | 126 | 4 | 129 | 8.45e-53 | 163 |
| Msa1380380 | AT3G11750.1 | 61.983 | 121 | 45 | 1 | 7 | 126 | 21 | 141 | 2.69e-49 | 154 |
| Msa1380380 | AT3G21730.1 | 50.000 | 120 | 59 | 1 | 8 | 126 | 40 | 159 | 9.27e-39 | 128 |
| Msa1380380 | AT3G21730.2 | 43.750 | 64 | 35 | 1 | 64 | 126 | 12 | 75 | 4.29e-13 | 60.5 |
Find 37 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGGGGATTGACATTCTT+TGG | 0.182580 | tig0020342:+92005 | Msa1380380:CDS |
| AAAGCCTCATGTGGCTATTC+AGG | 0.228909 | tig0020342:+93043 | Msa1380380:CDS |
| GAAACTATAAGCAGATAATT+TGG | 0.259747 | tig0020342:+93244 | Msa1380380:three_prime_UTR |
| AGGACCAGCTCAAAACCTTC+TGG | 0.353642 | tig0020342:+92944 | Msa1380380:CDS |
| ATTATTGTATCAAACAGAAT+TGG | 0.367027 | tig0020342:-93162 | None:intergenic |
| TTGAACCTCAGTTATTTGAT+TGG | 0.374751 | tig0020342:-91767 | None:intergenic |
| TTAGCTACGCTGAAATATAT+CGG | 0.447993 | tig0020342:+92141 | Msa1380380:CDS |
| AGTTTCATATTTACTACTGC+TGG | 0.453178 | tig0020342:+93126 | Msa1380380:three_prime_UTR |
| TCAACGCCTAAGTAATCAAC+CGG | 0.493700 | tig0020342:-93068 | None:intergenic |
| CAGTTATTTGATTGGAGAGA+CGG | 0.500268 | tig0020342:-91759 | None:intergenic |
| TCATGTGGCTATTCAGGGTC+CGG | 0.501646 | tig0020342:+93049 | Msa1380380:CDS |
| AGTTATTTGATTGGAGAGAC+GGG | 0.503862 | tig0020342:-91758 | None:intergenic |
| AAGCCTCATGTGGCTATTCA+GGG | 0.505045 | tig0020342:+93044 | Msa1380380:CDS |
| TGGATGGATCTTAAACCAGC+TGG | 0.524717 | tig0020342:+92092 | Msa1380380:CDS |
| CAGGGTCCGGTTGATTACTT+AGG | 0.534205 | tig0020342:+93062 | Msa1380380:CDS |
| CTACAACGAACTTCTGTCCA+AGG | 0.552732 | tig0020342:-92058 | None:intergenic |
| CTCTTTGTGAATTGTCAAAG+TGG | 0.557952 | tig0020342:-92994 | None:intergenic |
| GTGGAGACAAACTGATTCTG+AGG | 0.567883 | tig0020342:+91988 | Msa1380380:CDS |
| TACAACGAACTTCTGTCCAA+GGG | 0.568116 | tig0020342:-92057 | None:intergenic |
| TCTGCTGTTCGTGTGAAGAT+CGG | 0.568597 | tig0020342:+93020 | Msa1380380:CDS |
| ATAGCTAAGGAAGTTGTTGA+AGG | 0.569588 | tig0020342:+92924 | Msa1380380:CDS |
| AAATGATCAGAAATTCCAGC+TGG | 0.574592 | tig0020342:-92107 | None:intergenic |
| AAAATGGATGCGTTAATAGG+TGG | 0.579943 | tig0020342:+91969 | Msa1380380:exon |
| TGTAGATATAGATGCTTGGA+TGG | 0.580239 | tig0020342:+92076 | Msa1380380:CDS |
| TGGAGACAAACTGATTCTGA+GGG | 0.582302 | tig0020342:+91989 | Msa1380380:CDS |
| CCGCAGAGAGATATGACGAT+TGG | 0.587929 | tig0020342:-91819 | None:intergenic |
| TGGTTGATGCAGTATAGCTA+AGG | 0.588966 | tig0020342:+92911 | Msa1380380:intron |
| TCGTTGTAGATATAGATGCT+TGG | 0.592315 | tig0020342:+92072 | Msa1380380:CDS |
| TCAAAACCTTCTGGAATCAG+TGG | 0.595819 | tig0020342:+92953 | Msa1380380:CDS |
| TTTGGGCCACTGATTCCAGA+AGG | 0.599019 | tig0020342:-92959 | None:intergenic |
| ACAGTGAGTGAGTGAGTGAC+TGG | 0.609773 | tig0020342:+91789 | Msa1380380:five_prime_UTR |
| GTTATTTGATTGGAGAGACG+GGG | 0.665380 | tig0020342:-91757 | None:intergenic |
| GAAGATCGGAAAGCCTCATG+TGG | 0.680483 | tig0020342:+93034 | Msa1380380:CDS |
| GGACCCTGAATAGCCACATG+AGG | 0.705107 | tig0020342:-93047 | None:intergenic |
| TCTCTCCAATCAAATAACTG+AGG | 0.708232 | tig0020342:+91762 | Msa1380380:five_prime_UTR |
| CCAATCGTCATATCTCTCTG+CGG | 0.734128 | tig0020342:+91819 | Msa1380380:five_prime_UTR |
| GGAGACAAACTGATTCTGAG+GGG | 0.749444 | tig0020342:+91990 | Msa1380380:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTATTTATTTAATTGC+AGG | + | tig0020342:91940-91959 | Msa1380380:intron | 10.0% |
| !! | TAAATTAAATTAAATAGTAG+TGG | - | tig0020342:92325-92344 | None:intergenic | 10.0% |
| !! | TAAATCTGAAAAATAAATAA+CGG | + | tig0020342:92403-92422 | Msa1380380:intron | 10.0% |
| !! | TTATTTATTTATTTAATTGC+AGG | + | tig0020342:91940-91959 | Msa1380380:intron | 10.0% |
| !! | TAAATTAAATTAAATAGTAG+TGG | - | tig0020342:92325-92344 | None:intergenic | 10.0% |
| !! | TAAATCTGAAAAATAAATAA+CGG | + | tig0020342:92403-92422 | Msa1380380:intron | 10.0% |
| !! | TATACTGCTATAAATTATAA+TGG | + | tig0020342:92484-92503 | Msa1380380:intron | 15.0% |
| !! | AAATACAATTCAAAATAACA+GGG | - | tig0020342:92544-92563 | None:intergenic | 15.0% |
| !! | TATACTGCTATAAATTATAA+TGG | + | tig0020342:92484-92503 | Msa1380380:intron | 15.0% |
| !! | AAATACAATTCAAAATAACA+GGG | - | tig0020342:92544-92563 | None:intergenic | 15.0% |
| !! | TCATAAGAATAATGATAAAG+TGG | - | tig0020342:92180-92199 | None:intergenic | 20.0% |
| !! | ATCTACAGTATAATTTGAAT+TGG | - | tig0020342:92382-92401 | None:intergenic | 20.0% |
| !! | GAAATACAATTCAAAATAAC+AGG | - | tig0020342:92545-92564 | None:intergenic | 20.0% |
| !! | CTAAAACAGAAGATAAAATA+CGG | - | tig0020342:92777-92796 | None:intergenic | 20.0% |
| !!! | TCAAAAATTACTCTTCTTTT+GGG | - | tig0020342:92839-92858 | None:intergenic | 20.0% |
| !! | ATTATTGTATCAAACAGAAT+TGG | - | tig0020342:93165-93184 | None:intergenic | 20.0% |
| !!! | AACATCAAATCTACTATTTT+TGG | - | tig0020342:91721-91740 | None:intergenic | 20.0% |
| !! | TCATAAGAATAATGATAAAG+TGG | - | tig0020342:92180-92199 | None:intergenic | 20.0% |
| !! | ATCTACAGTATAATTTGAAT+TGG | - | tig0020342:92382-92401 | None:intergenic | 20.0% |
| !! | GAAATACAATTCAAAATAAC+AGG | - | tig0020342:92545-92564 | None:intergenic | 20.0% |
| !! | CTAAAACAGAAGATAAAATA+CGG | - | tig0020342:92777-92796 | None:intergenic | 20.0% |
| !!! | TCAAAAATTACTCTTCTTTT+GGG | - | tig0020342:92839-92858 | None:intergenic | 20.0% |
| !! | ATTATTGTATCAAACAGAAT+TGG | - | tig0020342:93165-93184 | None:intergenic | 20.0% |
| ! | AAAAAAATGGATGCGTTAAT+AGG | + | tig0020342:91966-91985 | Msa1380380:exon | 25.0% |
| !!! | TTATGAGTGAGTATTGAAAA+TGG | + | tig0020342:92276-92295 | Msa1380380:intron | 25.0% |
| !! | ATAAATAACGGAGTTGTTAA+TGG | + | tig0020342:92415-92434 | Msa1380380:intron | 25.0% |
| ! | AAATTTAATATCATCAACCC+TGG | - | tig0020342:92450-92469 | None:intergenic | 25.0% |
| !! | TGAATAGTTTGTGCTTAATT+TGG | + | tig0020342:92565-92584 | Msa1380380:intron | 25.0% |
| ! | TTAACATTCTGAACATACTT+TGG | + | tig0020342:92589-92608 | Msa1380380:intron | 25.0% |
| ! | TAACATTCTGAACATACTTT+GGG | + | tig0020342:92590-92609 | Msa1380380:intron | 25.0% |
| !! | CTCAAAAATTACTCTTCTTT+TGG | - | tig0020342:92840-92859 | None:intergenic | 25.0% |
| !! | CAAAAGAAGAGTAATTTTTG+AGG | + | tig0020342:92838-92857 | Msa1380380:intron | 25.0% |
| ! | TTAAACTAAACATACACACT+TGG | + | tig0020342:92891-92910 | Msa1380380:intron | 25.0% |
| ! | GAAACTATAAGCAGATAATT+TGG | + | tig0020342:93244-93263 | Msa1380380:three_prime_UTR | 25.0% |
| ! | AAAAAAATGGATGCGTTAAT+AGG | + | tig0020342:91966-91985 | Msa1380380:exon | 25.0% |
| !!! | TTATGAGTGAGTATTGAAAA+TGG | + | tig0020342:92276-92295 | Msa1380380:intron | 25.0% |
| !! | ATAAATAACGGAGTTGTTAA+TGG | + | tig0020342:92415-92434 | Msa1380380:intron | 25.0% |
| ! | AAATTTAATATCATCAACCC+TGG | - | tig0020342:92450-92469 | None:intergenic | 25.0% |
| !! | TGAATAGTTTGTGCTTAATT+TGG | + | tig0020342:92565-92584 | Msa1380380:intron | 25.0% |
| ! | TTAACATTCTGAACATACTT+TGG | + | tig0020342:92589-92608 | Msa1380380:intron | 25.0% |
| ! | TAACATTCTGAACATACTTT+GGG | + | tig0020342:92590-92609 | Msa1380380:intron | 25.0% |
| !! | CTCAAAAATTACTCTTCTTT+TGG | - | tig0020342:92840-92859 | None:intergenic | 25.0% |
| !! | CAAAAGAAGAGTAATTTTTG+AGG | + | tig0020342:92838-92857 | Msa1380380:intron | 25.0% |
| ! | TTAAACTAAACATACACACT+TGG | + | tig0020342:92891-92910 | Msa1380380:intron | 25.0% |
| ! | GAAACTATAAGCAGATAATT+TGG | + | tig0020342:93244-93263 | Msa1380380:three_prime_UTR | 25.0% |
| TTGAACCTCAGTTATTTGAT+TGG | - | tig0020342:91770-91789 | None:intergenic | 30.0% | |
| TAATTGCAGGAGCAAAAAAA+TGG | + | tig0020342:91953-91972 | Msa1380380:intron | 30.0% | |
| !!! | TTGACATTCTTTGGTTTTCA+TGG | + | tig0020342:92014-92033 | Msa1380380:CDS | 30.0% |
| ATAAAGGAAGAAAAAACCCT+TGG | + | tig0020342:92041-92060 | Msa1380380:CDS | 30.0% | |
| TTAGCTACGCTGAAATATAT+CGG | + | tig0020342:92141-92160 | Msa1380380:CDS | 30.0% | |
| !!! | GAGTGAGTGTTGAATATTTT+TGG | + | tig0020342:92249-92268 | Msa1380380:intron | 30.0% |
| TGTTAATGGTAAATTTGTCC+AGG | + | tig0020342:92429-92448 | Msa1380380:intron | 30.0% | |
| GTTAATGGTAAATTTGTCCA+GGG | + | tig0020342:92430-92449 | Msa1380380:intron | 30.0% | |
| ! | CAAGCATTGTGAAACTATTT+AGG | + | tig0020342:92651-92670 | Msa1380380:intron | 30.0% |
| ! | CGGTCAAACTGTTTAAAATA+AGG | - | tig0020342:92757-92776 | None:intergenic | 30.0% |
| !!! | AGTGGAGATTGCAATTTTTT+GGG | - | tig0020342:92979-92998 | None:intergenic | 30.0% |
| !!! | AAGTGGAGATTGCAATTTTT+TGG | - | tig0020342:92980-92999 | None:intergenic | 30.0% |
| AGTTTCATATTTACTACTGC+TGG | + | tig0020342:93126-93145 | Msa1380380:three_prime_UTR | 30.0% | |
| TTGAACCTCAGTTATTTGAT+TGG | - | tig0020342:91770-91789 | None:intergenic | 30.0% | |
| TAATTGCAGGAGCAAAAAAA+TGG | + | tig0020342:91953-91972 | Msa1380380:intron | 30.0% | |
| !!! | TTGACATTCTTTGGTTTTCA+TGG | + | tig0020342:92014-92033 | Msa1380380:CDS | 30.0% |
| ATAAAGGAAGAAAAAACCCT+TGG | + | tig0020342:92041-92060 | Msa1380380:CDS | 30.0% | |
| TTAGCTACGCTGAAATATAT+CGG | + | tig0020342:92141-92160 | Msa1380380:CDS | 30.0% | |
| !!! | GAGTGAGTGTTGAATATTTT+TGG | + | tig0020342:92249-92268 | Msa1380380:intron | 30.0% |
| TGTTAATGGTAAATTTGTCC+AGG | + | tig0020342:92429-92448 | Msa1380380:intron | 30.0% | |
| GTTAATGGTAAATTTGTCCA+GGG | + | tig0020342:92430-92449 | Msa1380380:intron | 30.0% | |
| ! | CAAGCATTGTGAAACTATTT+AGG | + | tig0020342:92651-92670 | Msa1380380:intron | 30.0% |
| ! | CGGTCAAACTGTTTAAAATA+AGG | - | tig0020342:92757-92776 | None:intergenic | 30.0% |
| !!! | AGTGGAGATTGCAATTTTTT+GGG | - | tig0020342:92979-92998 | None:intergenic | 30.0% |
| !!! | AAGTGGAGATTGCAATTTTT+TGG | - | tig0020342:92980-92999 | None:intergenic | 30.0% |
| AGTTTCATATTTACTACTGC+TGG | + | tig0020342:93126-93145 | Msa1380380:three_prime_UTR | 30.0% | |
| AGTTATTTGATTGGAGAGAC+GGG | - | tig0020342:91761-91780 | None:intergenic | 35.0% | |
| CAGTTATTTGATTGGAGAGA+CGG | - | tig0020342:91762-91781 | None:intergenic | 35.0% | |
| TCTCTCCAATCAAATAACTG+AGG | + | tig0020342:91762-91781 | Msa1380380:five_prime_UTR | 35.0% | |
| ATGTAATGGCAAACAATGAG+GGG | - | tig0020342:91857-91876 | None:intergenic | 35.0% | |
| CATGTAATGGCAAACAATGA+GGG | - | tig0020342:91858-91877 | None:intergenic | 35.0% | |
| AAAATGGATGCGTTAATAGG+TGG | + | tig0020342:91969-91988 | Msa1380380:exon | 35.0% | |
| ! | TGGTTTTCATGGAGCAATAA+AGG | + | tig0020342:92025-92044 | Msa1380380:CDS | 35.0% |
| TCGTTGTAGATATAGATGCT+TGG | + | tig0020342:92072-92091 | Msa1380380:CDS | 35.0% | |
| TGTAGATATAGATGCTTGGA+TGG | + | tig0020342:92076-92095 | Msa1380380:CDS | 35.0% | |
| AAATGATCAGAAATTCCAGC+TGG | - | tig0020342:92110-92129 | None:intergenic | 35.0% | |
| TCACTCTGAGCATTAAGTTT+AGG | - | tig0020342:92235-92254 | None:intergenic | 35.0% | |
| ! | GAACATACTTTGGGTTTGTT+TGG | + | tig0020342:92599-92618 | Msa1380380:intron | 35.0% |
| GAGTTTATGGGAAATAAGCT+TGG | - | tig0020342:92705-92724 | None:intergenic | 35.0% | |
| AGCTATCGTTGAGAGTTTAT+GGG | - | tig0020342:92717-92736 | None:intergenic | 35.0% | |
| AAGCTATCGTTGAGAGTTTA+TGG | - | tig0020342:92718-92737 | None:intergenic | 35.0% | |
| !! | TACTCTTCTTTTGGGAACAA+AGG | - | tig0020342:92831-92850 | None:intergenic | 35.0% |
| AAGCTCCACAAACATATGTT+TGG | - | tig0020342:92864-92883 | None:intergenic | 35.0% | |
| ATAGCTAAGGAAGTTGTTGA+AGG | + | tig0020342:92924-92943 | Msa1380380:CDS | 35.0% | |
| CTCTTTGTGAATTGTCAAAG+TGG | - | tig0020342:92997-93016 | None:intergenic | 35.0% | |
| AGTTATTTGATTGGAGAGAC+GGG | - | tig0020342:91761-91780 | None:intergenic | 35.0% | |
| CAGTTATTTGATTGGAGAGA+CGG | - | tig0020342:91762-91781 | None:intergenic | 35.0% | |
| TCTCTCCAATCAAATAACTG+AGG | + | tig0020342:91762-91781 | Msa1380380:five_prime_UTR | 35.0% | |
| ATGTAATGGCAAACAATGAG+GGG | - | tig0020342:91857-91876 | None:intergenic | 35.0% | |
| CATGTAATGGCAAACAATGA+GGG | - | tig0020342:91858-91877 | None:intergenic | 35.0% | |
| AAAATGGATGCGTTAATAGG+TGG | + | tig0020342:91969-91988 | Msa1380380:exon | 35.0% | |
| ! | TGGTTTTCATGGAGCAATAA+AGG | + | tig0020342:92025-92044 | Msa1380380:CDS | 35.0% |
| TCGTTGTAGATATAGATGCT+TGG | + | tig0020342:92072-92091 | Msa1380380:CDS | 35.0% | |
| TGTAGATATAGATGCTTGGA+TGG | + | tig0020342:92076-92095 | Msa1380380:CDS | 35.0% | |
| AAATGATCAGAAATTCCAGC+TGG | - | tig0020342:92110-92129 | None:intergenic | 35.0% | |
| TCACTCTGAGCATTAAGTTT+AGG | - | tig0020342:92235-92254 | None:intergenic | 35.0% | |
| ! | GAACATACTTTGGGTTTGTT+TGG | + | tig0020342:92599-92618 | Msa1380380:intron | 35.0% |
| GAGTTTATGGGAAATAAGCT+TGG | - | tig0020342:92705-92724 | None:intergenic | 35.0% | |
| AGCTATCGTTGAGAGTTTAT+GGG | - | tig0020342:92717-92736 | None:intergenic | 35.0% | |
| AAGCTATCGTTGAGAGTTTA+TGG | - | tig0020342:92718-92737 | None:intergenic | 35.0% | |
| !! | TACTCTTCTTTTGGGAACAA+AGG | - | tig0020342:92831-92850 | None:intergenic | 35.0% |
| AAGCTCCACAAACATATGTT+TGG | - | tig0020342:92864-92883 | None:intergenic | 35.0% | |
| ATAGCTAAGGAAGTTGTTGA+AGG | + | tig0020342:92924-92943 | Msa1380380:CDS | 35.0% | |
| CTCTTTGTGAATTGTCAAAG+TGG | - | tig0020342:92997-93016 | None:intergenic | 35.0% | |
| GTTATTTGATTGGAGAGACG+GGG | - | tig0020342:91760-91779 | None:intergenic | 40.0% | |
| TGTAATGGCAAACAATGAGG+GGG | - | tig0020342:91856-91875 | None:intergenic | 40.0% | |
| GCATGTAATGGCAAACAATG+AGG | - | tig0020342:91859-91878 | None:intergenic | 40.0% | |
| CTCTCTCTCTCTACTACTTT+AGG | + | tig0020342:91904-91923 | Msa1380380:intron | 40.0% | |
| ! | TGGAGACAAACTGATTCTGA+GGG | + | tig0020342:91989-92008 | Msa1380380:CDS | 40.0% |
| TACAACGAACTTCTGTCCAA+GGG | - | tig0020342:92060-92079 | None:intergenic | 40.0% | |
| TGAGGCCAAACATATGTTTG+TGG | + | tig0020342:92856-92875 | Msa1380380:intron | 40.0% | |
| ! | TGGTTGATGCAGTATAGCTA+AGG | + | tig0020342:92911-92930 | Msa1380380:intron | 40.0% |
| !! | TCAAAACCTTCTGGAATCAG+TGG | + | tig0020342:92953-92972 | Msa1380380:CDS | 40.0% |
| TCAACGCCTAAGTAATCAAC+CGG | - | tig0020342:93071-93090 | None:intergenic | 40.0% | |
| GTTATTTGATTGGAGAGACG+GGG | - | tig0020342:91760-91779 | None:intergenic | 40.0% | |
| TGTAATGGCAAACAATGAGG+GGG | - | tig0020342:91856-91875 | None:intergenic | 40.0% | |
| GCATGTAATGGCAAACAATG+AGG | - | tig0020342:91859-91878 | None:intergenic | 40.0% | |
| CTCTCTCTCTCTACTACTTT+AGG | + | tig0020342:91904-91923 | Msa1380380:intron | 40.0% | |
| ! | TGGAGACAAACTGATTCTGA+GGG | + | tig0020342:91989-92008 | Msa1380380:CDS | 40.0% |
| TACAACGAACTTCTGTCCAA+GGG | - | tig0020342:92060-92079 | None:intergenic | 40.0% | |
| TGAGGCCAAACATATGTTTG+TGG | + | tig0020342:92856-92875 | Msa1380380:intron | 40.0% | |
| ! | TGGTTGATGCAGTATAGCTA+AGG | + | tig0020342:92911-92930 | Msa1380380:intron | 40.0% |
| !! | TCAAAACCTTCTGGAATCAG+TGG | + | tig0020342:92953-92972 | Msa1380380:CDS | 40.0% |
| TCAACGCCTAAGTAATCAAC+CGG | - | tig0020342:93071-93090 | None:intergenic | 40.0% | |
| CCAATCGTCATATCTCTCTG+CGG | + | tig0020342:91819-91838 | Msa1380380:five_prime_UTR | 45.0% | |
| TAATGGCAAACAATGAGGGG+GGG | - | tig0020342:91854-91873 | None:intergenic | 45.0% | |
| GTAATGGCAAACAATGAGGG+GGG | - | tig0020342:91855-91874 | None:intergenic | 45.0% | |
| GAGAGAGATAACGAGTGTGA+GGG | - | tig0020342:91885-91904 | None:intergenic | 45.0% | |
| AGAGAGAGATAACGAGTGTG+AGG | - | tig0020342:91886-91905 | None:intergenic | 45.0% | |
| ! | GTGGAGACAAACTGATTCTG+AGG | + | tig0020342:91988-92007 | Msa1380380:CDS | 45.0% |
| ! | GGAGACAAACTGATTCTGAG+GGG | + | tig0020342:91990-92009 | Msa1380380:CDS | 45.0% |
| CTGAGGGGATTGACATTCTT+TGG | + | tig0020342:92005-92024 | Msa1380380:CDS | 45.0% | |
| CTACAACGAACTTCTGTCCA+AGG | - | tig0020342:92061-92080 | None:intergenic | 45.0% | |
| TGGATGGATCTTAAACCAGC+TGG | + | tig0020342:92092-92111 | Msa1380380:CDS | 45.0% | |
| GGCAGTACCAATGTTAGACT+CGG | - | tig0020342:92523-92542 | None:intergenic | 45.0% | |
| !!! | GATTCCAGAAGGTTTTGAGC+TGG | - | tig0020342:92951-92970 | None:intergenic | 45.0% |
| TCTGCTGTTCGTGTGAAGAT+CGG | + | tig0020342:93020-93039 | Msa1380380:CDS | 45.0% | |
| AAAGCCTCATGTGGCTATTC+AGG | + | tig0020342:93043-93062 | Msa1380380:CDS | 45.0% | |
| AAGCCTCATGTGGCTATTCA+GGG | + | tig0020342:93044-93063 | Msa1380380:CDS | 45.0% | |
| CCAATCGTCATATCTCTCTG+CGG | + | tig0020342:91819-91838 | Msa1380380:five_prime_UTR | 45.0% | |
| TAATGGCAAACAATGAGGGG+GGG | - | tig0020342:91854-91873 | None:intergenic | 45.0% | |
| GTAATGGCAAACAATGAGGG+GGG | - | tig0020342:91855-91874 | None:intergenic | 45.0% | |
| GAGAGAGATAACGAGTGTGA+GGG | - | tig0020342:91885-91904 | None:intergenic | 45.0% | |
| AGAGAGAGATAACGAGTGTG+AGG | - | tig0020342:91886-91905 | None:intergenic | 45.0% | |
| ! | GTGGAGACAAACTGATTCTG+AGG | + | tig0020342:91988-92007 | Msa1380380:CDS | 45.0% |
| ! | GGAGACAAACTGATTCTGAG+GGG | + | tig0020342:91990-92009 | Msa1380380:CDS | 45.0% |
| CTGAGGGGATTGACATTCTT+TGG | + | tig0020342:92005-92024 | Msa1380380:CDS | 45.0% | |
| CTACAACGAACTTCTGTCCA+AGG | - | tig0020342:92061-92080 | None:intergenic | 45.0% | |
| TGGATGGATCTTAAACCAGC+TGG | + | tig0020342:92092-92111 | Msa1380380:CDS | 45.0% | |
| GGCAGTACCAATGTTAGACT+CGG | - | tig0020342:92523-92542 | None:intergenic | 45.0% | |
| !!! | GATTCCAGAAGGTTTTGAGC+TGG | - | tig0020342:92951-92970 | None:intergenic | 45.0% |
| TCTGCTGTTCGTGTGAAGAT+CGG | + | tig0020342:93020-93039 | Msa1380380:CDS | 45.0% | |
| AAAGCCTCATGTGGCTATTC+AGG | + | tig0020342:93043-93062 | Msa1380380:CDS | 45.0% | |
| AAGCCTCATGTGGCTATTCA+GGG | + | tig0020342:93044-93063 | Msa1380380:CDS | 45.0% | |
| ACAGTGAGTGAGTGAGTGAC+TGG | + | tig0020342:91789-91808 | Msa1380380:five_prime_UTR | 50.0% | |
| CCGCAGAGAGATATGACGAT+TGG | - | tig0020342:91822-91841 | None:intergenic | 50.0% | |
| ! | GTGTGAGGGTGTGCATGTAA+TGG | - | tig0020342:91871-91890 | None:intergenic | 50.0% |
| ! | CCAATGTTAGACTCGGTACG+TGG | - | tig0020342:92516-92535 | None:intergenic | 50.0% |
| CCACGTACCGAGTCTAACAT+TGG | + | tig0020342:92513-92532 | Msa1380380:intron | 50.0% | |
| AGGACCAGCTCAAAACCTTC+TGG | + | tig0020342:92944-92963 | Msa1380380:CDS | 50.0% | |
| !! | TTTGGGCCACTGATTCCAGA+AGG | - | tig0020342:92962-92981 | None:intergenic | 50.0% |
| GAAGATCGGAAAGCCTCATG+TGG | + | tig0020342:93034-93053 | Msa1380380:CDS | 50.0% | |
| TCATGTGGCTATTCAGGGTC+CGG | + | tig0020342:93049-93068 | Msa1380380:CDS | 50.0% | |
| CAGGGTCCGGTTGATTACTT+AGG | + | tig0020342:93062-93081 | Msa1380380:CDS | 50.0% | |
| ACAGTGAGTGAGTGAGTGAC+TGG | + | tig0020342:91789-91808 | Msa1380380:five_prime_UTR | 50.0% | |
| CCGCAGAGAGATATGACGAT+TGG | - | tig0020342:91822-91841 | None:intergenic | 50.0% | |
| ! | GTGTGAGGGTGTGCATGTAA+TGG | - | tig0020342:91871-91890 | None:intergenic | 50.0% |
| ! | CCAATGTTAGACTCGGTACG+TGG | - | tig0020342:92516-92535 | None:intergenic | 50.0% |
| CCACGTACCGAGTCTAACAT+TGG | + | tig0020342:92513-92532 | Msa1380380:intron | 50.0% | |
| AGGACCAGCTCAAAACCTTC+TGG | + | tig0020342:92944-92963 | Msa1380380:CDS | 50.0% | |
| !! | TTTGGGCCACTGATTCCAGA+AGG | - | tig0020342:92962-92981 | None:intergenic | 50.0% |
| GAAGATCGGAAAGCCTCATG+TGG | + | tig0020342:93034-93053 | Msa1380380:CDS | 50.0% | |
| TCATGTGGCTATTCAGGGTC+CGG | + | tig0020342:93049-93068 | Msa1380380:CDS | 50.0% | |
| CAGGGTCCGGTTGATTACTT+AGG | + | tig0020342:93062-93081 | Msa1380380:CDS | 50.0% | |
| GGACCCTGAATAGCCACATG+AGG | - | tig0020342:93050-93069 | None:intergenic | 55.0% | |
| GGACCCTGAATAGCCACATG+AGG | - | tig0020342:93050-93069 | None:intergenic | 55.0% | |
| TGGCAAACAATGAGGGGGGG+AGG | - | tig0020342:91851-91870 | None:intergenic | 60.0% | |
| TGGCAAACAATGAGGGGGGG+AGG | - | tig0020342:91851-91870 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0020342 | gene | 91721 | 93314 | 91721 | ID=Msa1380380;Name=Msa1380380 |
| tig0020342 | mRNA | 91721 | 93314 | 91721 | ID=Msa1380380-mRNA-1;Parent=Msa1380380;Name=Msa1380380-mRNA-1;_AED=0.23;_eAED=0.23;_QI=130|1|1|1|0.5|0.33|3|190|130 |
| tig0020342 | exon | 91721 | 91840 | 91721 | ID=Msa1380380-mRNA-1:exon:7106;Parent=Msa1380380-mRNA-1 |
| tig0020342 | exon | 91962 | 92162 | 91962 | ID=Msa1380380-mRNA-1:exon:7107;Parent=Msa1380380-mRNA-1 |
| tig0020342 | exon | 92923 | 93314 | 92923 | ID=Msa1380380-mRNA-1:exon:7108;Parent=Msa1380380-mRNA-1 |
| tig0020342 | five_prime_UTR | 91721 | 91840 | 91721 | ID=Msa1380380-mRNA-1:five_prime_utr;Parent=Msa1380380-mRNA-1 |
| tig0020342 | five_prime_UTR | 91962 | 91971 | 91962 | ID=Msa1380380-mRNA-1:five_prime_utr;Parent=Msa1380380-mRNA-1 |
| tig0020342 | CDS | 91972 | 92162 | 91972 | ID=Msa1380380-mRNA-1:cds;Parent=Msa1380380-mRNA-1 |
| tig0020342 | CDS | 92923 | 93124 | 92923 | ID=Msa1380380-mRNA-1:cds;Parent=Msa1380380-mRNA-1 |
| tig0020342 | three_prime_UTR | 93125 | 93314 | 93125 | ID=Msa1380380-mRNA-1:three_prime_utr;Parent=Msa1380380-mRNA-1 |
| Gene Sequence |
| Protein sequence |
