Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119170 | XP_013450239.1 | 94.615 | 130 | 7 | 0 | 1 | 130 | 1 | 130 | 1.12e-82 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119170 | sp|Q9FM54|FOLB2_ARATH | 65.079 | 126 | 43 | 1 | 2 | 126 | 4 | 129 | 8.31e-52 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119170 | A0A072U3F9 | 94.615 | 130 | 7 | 0 | 1 | 130 | 1 | 130 | 5.35e-83 | 248 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0709780 | Msa1119170 | 0.808588 | 2.876305e-50 | -8.615850e-47 |
| Msa0434920 | Msa1119170 | 0.802861 | 4.588821e-49 | -8.615850e-47 |
| Msa1037640 | Msa1119170 | 0.803778 | 2.964091e-49 | -8.615850e-47 |
| Msa0315980 | Msa1119170 | 0.808212 | 3.460623e-50 | -8.615850e-47 |
| Msa1119070 | Msa1119170 | 0.994668 | 3.554276e-209 | -8.615850e-47 |
| Msa1119170 | Msa1258710 | 0.813013 | 3.172375e-51 | -8.615850e-47 |
| Msa1119170 | Msa1266060 | 0.834041 | 3.769141e-56 | -8.615850e-47 |
| Msa1119170 | Msa1380380 | 0.995033 | 2.103217e-212 | -8.615850e-47 |
| Msa1119170 | Msa1410440 | 0.836685 | 8.094030e-57 | -8.615850e-47 |
| Msa1119170 | Msa1449930 | 0.803153 | 3.992952e-49 | -8.615850e-47 |
| Msa0867060 | Msa1119170 | 0.829703 | 4.438141e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119170 | MtrunA17_Chr7g0267671 | 94.615 | 130 | 7 | 0 | 1 | 130 | 1 | 130 | 1.03e-86 | 248 |
| Msa1119170 | MtrunA17_Chr2g0322821 | 85.271 | 129 | 19 | 0 | 1 | 129 | 15 | 143 | 2.94e-79 | 230 |
| Msa1119170 | MtrunA17_Chr7g0267651 | 82.946 | 129 | 22 | 0 | 2 | 130 | 5 | 133 | 1.76e-74 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119170 | AT5G62980.2 | 65.079 | 126 | 43 | 1 | 2 | 126 | 4 | 129 | 8.45e-53 | 163 |
| Msa1119170 | AT5G62980.1 | 65.079 | 126 | 43 | 1 | 2 | 126 | 4 | 129 | 8.45e-53 | 163 |
| Msa1119170 | AT3G11750.1 | 61.983 | 121 | 45 | 1 | 7 | 126 | 21 | 141 | 2.69e-49 | 154 |
| Msa1119170 | AT3G21730.1 | 50.000 | 120 | 59 | 1 | 8 | 126 | 40 | 159 | 9.27e-39 | 128 |
| Msa1119170 | AT3G21730.2 | 43.750 | 64 | 35 | 1 | 64 | 126 | 12 | 75 | 4.29e-13 | 60.5 |
Find 37 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGGGGATTGACATTCTT+TGG | 0.182580 | 7_3:+68018146 | Msa1119170:CDS |
| AAAGCCTCATGTGGCTATTC+AGG | 0.228909 | 7_3:+68019184 | Msa1119170:CDS |
| GAAACTATAAGCAGATAATT+TGG | 0.259747 | 7_3:+68019385 | Msa1119170:three_prime_UTR |
| AGGACCAGCTCAAAACCTTC+TGG | 0.353642 | 7_3:+68019085 | Msa1119170:CDS |
| ATTATTGTATCAAACAGAAT+TGG | 0.367027 | 7_3:-68019303 | None:intergenic |
| TTGAACCTCAGTTATTTGAT+TGG | 0.374751 | 7_3:-68017908 | None:intergenic |
| TTAGCTACGCTGAAATATAT+CGG | 0.447993 | 7_3:+68018282 | Msa1119170:CDS |
| AGTTTCATATTTACTACTGC+TGG | 0.453178 | 7_3:+68019267 | Msa1119170:three_prime_UTR |
| TCAACGCCTAAGTAATCAAC+CGG | 0.493700 | 7_3:-68019209 | None:intergenic |
| CAGTTATTTGATTGGAGAGA+CGG | 0.500268 | 7_3:-68017900 | None:intergenic |
| TCATGTGGCTATTCAGGGTC+CGG | 0.501646 | 7_3:+68019190 | Msa1119170:CDS |
| AGTTATTTGATTGGAGAGAC+GGG | 0.503862 | 7_3:-68017899 | None:intergenic |
| AAGCCTCATGTGGCTATTCA+GGG | 0.505045 | 7_3:+68019185 | Msa1119170:CDS |
| TGGATGGATCTTAAACCAGC+TGG | 0.524717 | 7_3:+68018233 | Msa1119170:CDS |
| CAGGGTCCGGTTGATTACTT+AGG | 0.534205 | 7_3:+68019203 | Msa1119170:CDS |
| CTACAACGAACTTCTGTCCA+AGG | 0.552732 | 7_3:-68018199 | None:intergenic |
| CTCTTTGTGAATTGTCAAAG+TGG | 0.557952 | 7_3:-68019135 | None:intergenic |
| GTGGAGACAAACTGATTCTG+AGG | 0.567883 | 7_3:+68018129 | Msa1119170:CDS |
| TACAACGAACTTCTGTCCAA+GGG | 0.568116 | 7_3:-68018198 | None:intergenic |
| TCTGCTGTTCGTGTGAAGAT+CGG | 0.568597 | 7_3:+68019161 | Msa1119170:CDS |
| ATAGCTAAGGAAGTTGTTGA+AGG | 0.569588 | 7_3:+68019065 | Msa1119170:CDS |
| AAATGATCAGAAATTCCAGC+TGG | 0.574592 | 7_3:-68018248 | None:intergenic |
| AAAATGGATGCGTTAATAGG+TGG | 0.579943 | 7_3:+68018110 | Msa1119170:exon |
| TGTAGATATAGATGCTTGGA+TGG | 0.580239 | 7_3:+68018217 | Msa1119170:CDS |
| TGGAGACAAACTGATTCTGA+GGG | 0.582302 | 7_3:+68018130 | Msa1119170:CDS |
| CCGCAGAGAGATATGACGAT+TGG | 0.587929 | 7_3:-68017960 | None:intergenic |
| TGGTTGATGCAGTATAGCTA+AGG | 0.588966 | 7_3:+68019052 | Msa1119170:intron |
| TCGTTGTAGATATAGATGCT+TGG | 0.592315 | 7_3:+68018213 | Msa1119170:CDS |
| TCAAAACCTTCTGGAATCAG+TGG | 0.595819 | 7_3:+68019094 | Msa1119170:CDS |
| TTTGGGCCACTGATTCCAGA+AGG | 0.599019 | 7_3:-68019100 | None:intergenic |
| ACAGTGAGTGAGTGAGTGAC+TGG | 0.609773 | 7_3:+68017930 | Msa1119170:five_prime_UTR |
| GTTATTTGATTGGAGAGACG+GGG | 0.665380 | 7_3:-68017898 | None:intergenic |
| GAAGATCGGAAAGCCTCATG+TGG | 0.680483 | 7_3:+68019175 | Msa1119170:CDS |
| GGACCCTGAATAGCCACATG+AGG | 0.705107 | 7_3:-68019188 | None:intergenic |
| TCTCTCCAATCAAATAACTG+AGG | 0.708232 | 7_3:+68017903 | Msa1119170:five_prime_UTR |
| CCAATCGTCATATCTCTCTG+CGG | 0.734128 | 7_3:+68017960 | Msa1119170:five_prime_UTR |
| GGAGACAAACTGATTCTGAG+GGG | 0.749444 | 7_3:+68018131 | Msa1119170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTATTTATTTAATTGC+AGG | + | chr7_3:68018081-68018100 | Msa1119170:intron | 10.0% |
| !! | TAAATTAAATTAAATAGTAG+TGG | - | chr7_3:68018466-68018485 | None:intergenic | 10.0% |
| !! | TAAATCTGAAAAATAAATAA+CGG | + | chr7_3:68018544-68018563 | Msa1119170:intron | 10.0% |
| !! | TTATTTATTTATTTAATTGC+AGG | + | chr7_3:68018081-68018100 | Msa1119170:intron | 10.0% |
| !! | TAAATTAAATTAAATAGTAG+TGG | - | chr7_3:68018466-68018485 | None:intergenic | 10.0% |
| !! | TAAATCTGAAAAATAAATAA+CGG | + | chr7_3:68018544-68018563 | Msa1119170:intron | 10.0% |
| !! | TATACTGCTATAAATTATAA+TGG | + | chr7_3:68018625-68018644 | Msa1119170:intron | 15.0% |
| !! | AAATACAATTCAAAATAACA+GGG | - | chr7_3:68018685-68018704 | None:intergenic | 15.0% |
| !! | TATACTGCTATAAATTATAA+TGG | + | chr7_3:68018625-68018644 | Msa1119170:intron | 15.0% |
| !! | AAATACAATTCAAAATAACA+GGG | - | chr7_3:68018685-68018704 | None:intergenic | 15.0% |
| !! | TCATAAGAATAATGATAAAG+TGG | - | chr7_3:68018321-68018340 | None:intergenic | 20.0% |
| !! | ATCTACAGTATAATTTGAAT+TGG | - | chr7_3:68018523-68018542 | None:intergenic | 20.0% |
| !! | GAAATACAATTCAAAATAAC+AGG | - | chr7_3:68018686-68018705 | None:intergenic | 20.0% |
| !! | CTAAAACAGAAGATAAAATA+CGG | - | chr7_3:68018918-68018937 | None:intergenic | 20.0% |
| !!! | TCAAAAATTACTCTTCTTTT+GGG | - | chr7_3:68018980-68018999 | None:intergenic | 20.0% |
| !! | ATTATTGTATCAAACAGAAT+TGG | - | chr7_3:68019306-68019325 | None:intergenic | 20.0% |
| !!! | AACATCAAATCTACTATTTT+TGG | - | chr7_3:68017862-68017881 | None:intergenic | 20.0% |
| !! | TCATAAGAATAATGATAAAG+TGG | - | chr7_3:68018321-68018340 | None:intergenic | 20.0% |
| !! | ATCTACAGTATAATTTGAAT+TGG | - | chr7_3:68018523-68018542 | None:intergenic | 20.0% |
| !! | GAAATACAATTCAAAATAAC+AGG | - | chr7_3:68018686-68018705 | None:intergenic | 20.0% |
| !! | CTAAAACAGAAGATAAAATA+CGG | - | chr7_3:68018918-68018937 | None:intergenic | 20.0% |
| !!! | TCAAAAATTACTCTTCTTTT+GGG | - | chr7_3:68018980-68018999 | None:intergenic | 20.0% |
| !! | ATTATTGTATCAAACAGAAT+TGG | - | chr7_3:68019306-68019325 | None:intergenic | 20.0% |
| ! | AAAAAAATGGATGCGTTAAT+AGG | + | chr7_3:68018107-68018126 | Msa1119170:exon | 25.0% |
| !!! | TTATGAGTGAGTATTGAAAA+TGG | + | chr7_3:68018417-68018436 | Msa1119170:intron | 25.0% |
| !! | ATAAATAACGGAGTTGTTAA+TGG | + | chr7_3:68018556-68018575 | Msa1119170:intron | 25.0% |
| ! | AAATTTAATATCATCAACCC+TGG | - | chr7_3:68018591-68018610 | None:intergenic | 25.0% |
| !! | TGAATAGTTTGTGCTTAATT+TGG | + | chr7_3:68018706-68018725 | Msa1119170:intron | 25.0% |
| ! | TTAACATTCTGAACATACTT+TGG | + | chr7_3:68018730-68018749 | Msa1119170:intron | 25.0% |
| ! | TAACATTCTGAACATACTTT+GGG | + | chr7_3:68018731-68018750 | Msa1119170:intron | 25.0% |
| !! | CTCAAAAATTACTCTTCTTT+TGG | - | chr7_3:68018981-68019000 | None:intergenic | 25.0% |
| !! | CAAAAGAAGAGTAATTTTTG+AGG | + | chr7_3:68018979-68018998 | Msa1119170:intron | 25.0% |
| ! | TTAAACTAAACATACACACT+TGG | + | chr7_3:68019032-68019051 | Msa1119170:intron | 25.0% |
| ! | GAAACTATAAGCAGATAATT+TGG | + | chr7_3:68019385-68019404 | Msa1119170:three_prime_UTR | 25.0% |
| ! | AAAAAAATGGATGCGTTAAT+AGG | + | chr7_3:68018107-68018126 | Msa1119170:exon | 25.0% |
| !!! | TTATGAGTGAGTATTGAAAA+TGG | + | chr7_3:68018417-68018436 | Msa1119170:intron | 25.0% |
| !! | ATAAATAACGGAGTTGTTAA+TGG | + | chr7_3:68018556-68018575 | Msa1119170:intron | 25.0% |
| ! | AAATTTAATATCATCAACCC+TGG | - | chr7_3:68018591-68018610 | None:intergenic | 25.0% |
| !! | TGAATAGTTTGTGCTTAATT+TGG | + | chr7_3:68018706-68018725 | Msa1119170:intron | 25.0% |
| ! | TTAACATTCTGAACATACTT+TGG | + | chr7_3:68018730-68018749 | Msa1119170:intron | 25.0% |
| ! | TAACATTCTGAACATACTTT+GGG | + | chr7_3:68018731-68018750 | Msa1119170:intron | 25.0% |
| !! | CTCAAAAATTACTCTTCTTT+TGG | - | chr7_3:68018981-68019000 | None:intergenic | 25.0% |
| !! | CAAAAGAAGAGTAATTTTTG+AGG | + | chr7_3:68018979-68018998 | Msa1119170:intron | 25.0% |
| ! | TTAAACTAAACATACACACT+TGG | + | chr7_3:68019032-68019051 | Msa1119170:intron | 25.0% |
| ! | GAAACTATAAGCAGATAATT+TGG | + | chr7_3:68019385-68019404 | Msa1119170:three_prime_UTR | 25.0% |
| TTGAACCTCAGTTATTTGAT+TGG | - | chr7_3:68017911-68017930 | None:intergenic | 30.0% | |
| TAATTGCAGGAGCAAAAAAA+TGG | + | chr7_3:68018094-68018113 | Msa1119170:intron | 30.0% | |
| !!! | TTGACATTCTTTGGTTTTCA+TGG | + | chr7_3:68018155-68018174 | Msa1119170:CDS | 30.0% |
| ATAAAGGAAGAAAAAACCCT+TGG | + | chr7_3:68018182-68018201 | Msa1119170:CDS | 30.0% | |
| TTAGCTACGCTGAAATATAT+CGG | + | chr7_3:68018282-68018301 | Msa1119170:CDS | 30.0% | |
| !!! | GAGTGAGTGTTGAATATTTT+TGG | + | chr7_3:68018390-68018409 | Msa1119170:intron | 30.0% |
| TGTTAATGGTAAATTTGTCC+AGG | + | chr7_3:68018570-68018589 | Msa1119170:intron | 30.0% | |
| GTTAATGGTAAATTTGTCCA+GGG | + | chr7_3:68018571-68018590 | Msa1119170:intron | 30.0% | |
| ! | CAAGCATTGTGAAACTATTT+AGG | + | chr7_3:68018792-68018811 | Msa1119170:intron | 30.0% |
| ! | CGGTCAAACTGTTTAAAATA+AGG | - | chr7_3:68018898-68018917 | None:intergenic | 30.0% |
| !!! | AGTGGAGATTGCAATTTTTT+GGG | - | chr7_3:68019120-68019139 | None:intergenic | 30.0% |
| !!! | AAGTGGAGATTGCAATTTTT+TGG | - | chr7_3:68019121-68019140 | None:intergenic | 30.0% |
| AGTTTCATATTTACTACTGC+TGG | + | chr7_3:68019267-68019286 | Msa1119170:three_prime_UTR | 30.0% | |
| TTGAACCTCAGTTATTTGAT+TGG | - | chr7_3:68017911-68017930 | None:intergenic | 30.0% | |
| TAATTGCAGGAGCAAAAAAA+TGG | + | chr7_3:68018094-68018113 | Msa1119170:intron | 30.0% | |
| !!! | TTGACATTCTTTGGTTTTCA+TGG | + | chr7_3:68018155-68018174 | Msa1119170:CDS | 30.0% |
| ATAAAGGAAGAAAAAACCCT+TGG | + | chr7_3:68018182-68018201 | Msa1119170:CDS | 30.0% | |
| TTAGCTACGCTGAAATATAT+CGG | + | chr7_3:68018282-68018301 | Msa1119170:CDS | 30.0% | |
| !!! | GAGTGAGTGTTGAATATTTT+TGG | + | chr7_3:68018390-68018409 | Msa1119170:intron | 30.0% |
| TGTTAATGGTAAATTTGTCC+AGG | + | chr7_3:68018570-68018589 | Msa1119170:intron | 30.0% | |
| GTTAATGGTAAATTTGTCCA+GGG | + | chr7_3:68018571-68018590 | Msa1119170:intron | 30.0% | |
| ! | CAAGCATTGTGAAACTATTT+AGG | + | chr7_3:68018792-68018811 | Msa1119170:intron | 30.0% |
| ! | CGGTCAAACTGTTTAAAATA+AGG | - | chr7_3:68018898-68018917 | None:intergenic | 30.0% |
| !!! | AGTGGAGATTGCAATTTTTT+GGG | - | chr7_3:68019120-68019139 | None:intergenic | 30.0% |
| !!! | AAGTGGAGATTGCAATTTTT+TGG | - | chr7_3:68019121-68019140 | None:intergenic | 30.0% |
| AGTTTCATATTTACTACTGC+TGG | + | chr7_3:68019267-68019286 | Msa1119170:three_prime_UTR | 30.0% | |
| AGTTATTTGATTGGAGAGAC+GGG | - | chr7_3:68017902-68017921 | None:intergenic | 35.0% | |
| CAGTTATTTGATTGGAGAGA+CGG | - | chr7_3:68017903-68017922 | None:intergenic | 35.0% | |
| TCTCTCCAATCAAATAACTG+AGG | + | chr7_3:68017903-68017922 | Msa1119170:five_prime_UTR | 35.0% | |
| ATGTAATGGCAAACAATGAG+GGG | - | chr7_3:68017998-68018017 | None:intergenic | 35.0% | |
| CATGTAATGGCAAACAATGA+GGG | - | chr7_3:68017999-68018018 | None:intergenic | 35.0% | |
| AAAATGGATGCGTTAATAGG+TGG | + | chr7_3:68018110-68018129 | Msa1119170:exon | 35.0% | |
| ! | TGGTTTTCATGGAGCAATAA+AGG | + | chr7_3:68018166-68018185 | Msa1119170:CDS | 35.0% |
| TCGTTGTAGATATAGATGCT+TGG | + | chr7_3:68018213-68018232 | Msa1119170:CDS | 35.0% | |
| TGTAGATATAGATGCTTGGA+TGG | + | chr7_3:68018217-68018236 | Msa1119170:CDS | 35.0% | |
| AAATGATCAGAAATTCCAGC+TGG | - | chr7_3:68018251-68018270 | None:intergenic | 35.0% | |
| TCACTCTGAGCATTAAGTTT+AGG | - | chr7_3:68018376-68018395 | None:intergenic | 35.0% | |
| ! | GAACATACTTTGGGTTTGTT+TGG | + | chr7_3:68018740-68018759 | Msa1119170:intron | 35.0% |
| GAGTTTATGGGAAATAAGCT+TGG | - | chr7_3:68018846-68018865 | None:intergenic | 35.0% | |
| AGCTATCGTTGAGAGTTTAT+GGG | - | chr7_3:68018858-68018877 | None:intergenic | 35.0% | |
| AAGCTATCGTTGAGAGTTTA+TGG | - | chr7_3:68018859-68018878 | None:intergenic | 35.0% | |
| !! | TACTCTTCTTTTGGGAACAA+AGG | - | chr7_3:68018972-68018991 | None:intergenic | 35.0% |
| AAGCTCCACAAACATATGTT+TGG | - | chr7_3:68019005-68019024 | None:intergenic | 35.0% | |
| ATAGCTAAGGAAGTTGTTGA+AGG | + | chr7_3:68019065-68019084 | Msa1119170:CDS | 35.0% | |
| CTCTTTGTGAATTGTCAAAG+TGG | - | chr7_3:68019138-68019157 | None:intergenic | 35.0% | |
| AGTTATTTGATTGGAGAGAC+GGG | - | chr7_3:68017902-68017921 | None:intergenic | 35.0% | |
| CAGTTATTTGATTGGAGAGA+CGG | - | chr7_3:68017903-68017922 | None:intergenic | 35.0% | |
| TCTCTCCAATCAAATAACTG+AGG | + | chr7_3:68017903-68017922 | Msa1119170:five_prime_UTR | 35.0% | |
| ATGTAATGGCAAACAATGAG+GGG | - | chr7_3:68017998-68018017 | None:intergenic | 35.0% | |
| CATGTAATGGCAAACAATGA+GGG | - | chr7_3:68017999-68018018 | None:intergenic | 35.0% | |
| AAAATGGATGCGTTAATAGG+TGG | + | chr7_3:68018110-68018129 | Msa1119170:exon | 35.0% | |
| ! | TGGTTTTCATGGAGCAATAA+AGG | + | chr7_3:68018166-68018185 | Msa1119170:CDS | 35.0% |
| TCGTTGTAGATATAGATGCT+TGG | + | chr7_3:68018213-68018232 | Msa1119170:CDS | 35.0% | |
| TGTAGATATAGATGCTTGGA+TGG | + | chr7_3:68018217-68018236 | Msa1119170:CDS | 35.0% | |
| AAATGATCAGAAATTCCAGC+TGG | - | chr7_3:68018251-68018270 | None:intergenic | 35.0% | |
| TCACTCTGAGCATTAAGTTT+AGG | - | chr7_3:68018376-68018395 | None:intergenic | 35.0% | |
| ! | GAACATACTTTGGGTTTGTT+TGG | + | chr7_3:68018740-68018759 | Msa1119170:intron | 35.0% |
| GAGTTTATGGGAAATAAGCT+TGG | - | chr7_3:68018846-68018865 | None:intergenic | 35.0% | |
| AGCTATCGTTGAGAGTTTAT+GGG | - | chr7_3:68018858-68018877 | None:intergenic | 35.0% | |
| AAGCTATCGTTGAGAGTTTA+TGG | - | chr7_3:68018859-68018878 | None:intergenic | 35.0% | |
| !! | TACTCTTCTTTTGGGAACAA+AGG | - | chr7_3:68018972-68018991 | None:intergenic | 35.0% |
| AAGCTCCACAAACATATGTT+TGG | - | chr7_3:68019005-68019024 | None:intergenic | 35.0% | |
| ATAGCTAAGGAAGTTGTTGA+AGG | + | chr7_3:68019065-68019084 | Msa1119170:CDS | 35.0% | |
| CTCTTTGTGAATTGTCAAAG+TGG | - | chr7_3:68019138-68019157 | None:intergenic | 35.0% | |
| GTTATTTGATTGGAGAGACG+GGG | - | chr7_3:68017901-68017920 | None:intergenic | 40.0% | |
| TGTAATGGCAAACAATGAGG+GGG | - | chr7_3:68017997-68018016 | None:intergenic | 40.0% | |
| GCATGTAATGGCAAACAATG+AGG | - | chr7_3:68018000-68018019 | None:intergenic | 40.0% | |
| CTCTCTCTCTCTACTACTTT+AGG | + | chr7_3:68018045-68018064 | Msa1119170:intron | 40.0% | |
| ! | TGGAGACAAACTGATTCTGA+GGG | + | chr7_3:68018130-68018149 | Msa1119170:CDS | 40.0% |
| TACAACGAACTTCTGTCCAA+GGG | - | chr7_3:68018201-68018220 | None:intergenic | 40.0% | |
| TGAGGCCAAACATATGTTTG+TGG | + | chr7_3:68018997-68019016 | Msa1119170:intron | 40.0% | |
| ! | TGGTTGATGCAGTATAGCTA+AGG | + | chr7_3:68019052-68019071 | Msa1119170:intron | 40.0% |
| !! | TCAAAACCTTCTGGAATCAG+TGG | + | chr7_3:68019094-68019113 | Msa1119170:CDS | 40.0% |
| TCAACGCCTAAGTAATCAAC+CGG | - | chr7_3:68019212-68019231 | None:intergenic | 40.0% | |
| GTTATTTGATTGGAGAGACG+GGG | - | chr7_3:68017901-68017920 | None:intergenic | 40.0% | |
| TGTAATGGCAAACAATGAGG+GGG | - | chr7_3:68017997-68018016 | None:intergenic | 40.0% | |
| GCATGTAATGGCAAACAATG+AGG | - | chr7_3:68018000-68018019 | None:intergenic | 40.0% | |
| CTCTCTCTCTCTACTACTTT+AGG | + | chr7_3:68018045-68018064 | Msa1119170:intron | 40.0% | |
| ! | TGGAGACAAACTGATTCTGA+GGG | + | chr7_3:68018130-68018149 | Msa1119170:CDS | 40.0% |
| TACAACGAACTTCTGTCCAA+GGG | - | chr7_3:68018201-68018220 | None:intergenic | 40.0% | |
| TGAGGCCAAACATATGTTTG+TGG | + | chr7_3:68018997-68019016 | Msa1119170:intron | 40.0% | |
| ! | TGGTTGATGCAGTATAGCTA+AGG | + | chr7_3:68019052-68019071 | Msa1119170:intron | 40.0% |
| !! | TCAAAACCTTCTGGAATCAG+TGG | + | chr7_3:68019094-68019113 | Msa1119170:CDS | 40.0% |
| TCAACGCCTAAGTAATCAAC+CGG | - | chr7_3:68019212-68019231 | None:intergenic | 40.0% | |
| CCAATCGTCATATCTCTCTG+CGG | + | chr7_3:68017960-68017979 | Msa1119170:five_prime_UTR | 45.0% | |
| TAATGGCAAACAATGAGGGG+GGG | - | chr7_3:68017995-68018014 | None:intergenic | 45.0% | |
| GTAATGGCAAACAATGAGGG+GGG | - | chr7_3:68017996-68018015 | None:intergenic | 45.0% | |
| GAGAGAGATAACGAGTGTGA+GGG | - | chr7_3:68018026-68018045 | None:intergenic | 45.0% | |
| AGAGAGAGATAACGAGTGTG+AGG | - | chr7_3:68018027-68018046 | None:intergenic | 45.0% | |
| ! | GTGGAGACAAACTGATTCTG+AGG | + | chr7_3:68018129-68018148 | Msa1119170:CDS | 45.0% |
| ! | GGAGACAAACTGATTCTGAG+GGG | + | chr7_3:68018131-68018150 | Msa1119170:CDS | 45.0% |
| CTGAGGGGATTGACATTCTT+TGG | + | chr7_3:68018146-68018165 | Msa1119170:CDS | 45.0% | |
| CTACAACGAACTTCTGTCCA+AGG | - | chr7_3:68018202-68018221 | None:intergenic | 45.0% | |
| TGGATGGATCTTAAACCAGC+TGG | + | chr7_3:68018233-68018252 | Msa1119170:CDS | 45.0% | |
| GGCAGTACCAATGTTAGACT+CGG | - | chr7_3:68018664-68018683 | None:intergenic | 45.0% | |
| !!! | GATTCCAGAAGGTTTTGAGC+TGG | - | chr7_3:68019092-68019111 | None:intergenic | 45.0% |
| TCTGCTGTTCGTGTGAAGAT+CGG | + | chr7_3:68019161-68019180 | Msa1119170:CDS | 45.0% | |
| AAAGCCTCATGTGGCTATTC+AGG | + | chr7_3:68019184-68019203 | Msa1119170:CDS | 45.0% | |
| AAGCCTCATGTGGCTATTCA+GGG | + | chr7_3:68019185-68019204 | Msa1119170:CDS | 45.0% | |
| CCAATCGTCATATCTCTCTG+CGG | + | chr7_3:68017960-68017979 | Msa1119170:five_prime_UTR | 45.0% | |
| TAATGGCAAACAATGAGGGG+GGG | - | chr7_3:68017995-68018014 | None:intergenic | 45.0% | |
| GTAATGGCAAACAATGAGGG+GGG | - | chr7_3:68017996-68018015 | None:intergenic | 45.0% | |
| GAGAGAGATAACGAGTGTGA+GGG | - | chr7_3:68018026-68018045 | None:intergenic | 45.0% | |
| AGAGAGAGATAACGAGTGTG+AGG | - | chr7_3:68018027-68018046 | None:intergenic | 45.0% | |
| ! | GTGGAGACAAACTGATTCTG+AGG | + | chr7_3:68018129-68018148 | Msa1119170:CDS | 45.0% |
| ! | GGAGACAAACTGATTCTGAG+GGG | + | chr7_3:68018131-68018150 | Msa1119170:CDS | 45.0% |
| CTGAGGGGATTGACATTCTT+TGG | + | chr7_3:68018146-68018165 | Msa1119170:CDS | 45.0% | |
| CTACAACGAACTTCTGTCCA+AGG | - | chr7_3:68018202-68018221 | None:intergenic | 45.0% | |
| TGGATGGATCTTAAACCAGC+TGG | + | chr7_3:68018233-68018252 | Msa1119170:CDS | 45.0% | |
| GGCAGTACCAATGTTAGACT+CGG | - | chr7_3:68018664-68018683 | None:intergenic | 45.0% | |
| !!! | GATTCCAGAAGGTTTTGAGC+TGG | - | chr7_3:68019092-68019111 | None:intergenic | 45.0% |
| TCTGCTGTTCGTGTGAAGAT+CGG | + | chr7_3:68019161-68019180 | Msa1119170:CDS | 45.0% | |
| AAAGCCTCATGTGGCTATTC+AGG | + | chr7_3:68019184-68019203 | Msa1119170:CDS | 45.0% | |
| AAGCCTCATGTGGCTATTCA+GGG | + | chr7_3:68019185-68019204 | Msa1119170:CDS | 45.0% | |
| ACAGTGAGTGAGTGAGTGAC+TGG | + | chr7_3:68017930-68017949 | Msa1119170:five_prime_UTR | 50.0% | |
| CCGCAGAGAGATATGACGAT+TGG | - | chr7_3:68017963-68017982 | None:intergenic | 50.0% | |
| ! | GTGTGAGGGTGTGCATGTAA+TGG | - | chr7_3:68018012-68018031 | None:intergenic | 50.0% |
| ! | CCAATGTTAGACTCGGTACG+TGG | - | chr7_3:68018657-68018676 | None:intergenic | 50.0% |
| CCACGTACCGAGTCTAACAT+TGG | + | chr7_3:68018654-68018673 | Msa1119170:intron | 50.0% | |
| AGGACCAGCTCAAAACCTTC+TGG | + | chr7_3:68019085-68019104 | Msa1119170:CDS | 50.0% | |
| !! | TTTGGGCCACTGATTCCAGA+AGG | - | chr7_3:68019103-68019122 | None:intergenic | 50.0% |
| GAAGATCGGAAAGCCTCATG+TGG | + | chr7_3:68019175-68019194 | Msa1119170:CDS | 50.0% | |
| TCATGTGGCTATTCAGGGTC+CGG | + | chr7_3:68019190-68019209 | Msa1119170:CDS | 50.0% | |
| CAGGGTCCGGTTGATTACTT+AGG | + | chr7_3:68019203-68019222 | Msa1119170:CDS | 50.0% | |
| ACAGTGAGTGAGTGAGTGAC+TGG | + | chr7_3:68017930-68017949 | Msa1119170:five_prime_UTR | 50.0% | |
| CCGCAGAGAGATATGACGAT+TGG | - | chr7_3:68017963-68017982 | None:intergenic | 50.0% | |
| ! | GTGTGAGGGTGTGCATGTAA+TGG | - | chr7_3:68018012-68018031 | None:intergenic | 50.0% |
| ! | CCAATGTTAGACTCGGTACG+TGG | - | chr7_3:68018657-68018676 | None:intergenic | 50.0% |
| CCACGTACCGAGTCTAACAT+TGG | + | chr7_3:68018654-68018673 | Msa1119170:intron | 50.0% | |
| AGGACCAGCTCAAAACCTTC+TGG | + | chr7_3:68019085-68019104 | Msa1119170:CDS | 50.0% | |
| !! | TTTGGGCCACTGATTCCAGA+AGG | - | chr7_3:68019103-68019122 | None:intergenic | 50.0% |
| GAAGATCGGAAAGCCTCATG+TGG | + | chr7_3:68019175-68019194 | Msa1119170:CDS | 50.0% | |
| TCATGTGGCTATTCAGGGTC+CGG | + | chr7_3:68019190-68019209 | Msa1119170:CDS | 50.0% | |
| CAGGGTCCGGTTGATTACTT+AGG | + | chr7_3:68019203-68019222 | Msa1119170:CDS | 50.0% | |
| GGACCCTGAATAGCCACATG+AGG | - | chr7_3:68019191-68019210 | None:intergenic | 55.0% | |
| GGACCCTGAATAGCCACATG+AGG | - | chr7_3:68019191-68019210 | None:intergenic | 55.0% | |
| TGGCAAACAATGAGGGGGGG+AGG | - | chr7_3:68017992-68018011 | None:intergenic | 60.0% | |
| TGGCAAACAATGAGGGGGGG+AGG | - | chr7_3:68017992-68018011 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 68017862 | 68019455 | 68017862 | ID=Msa1119170;Name=Msa1119170 |
| chr7_3 | mRNA | 68017862 | 68019455 | 68017862 | ID=Msa1119170-mRNA-1;Parent=Msa1119170;Name=Msa1119170-mRNA-1;_AED=0.26;_eAED=0.26;_QI=130|1|1|1|0.5|0.33|3|190|130 |
| chr7_3 | exon | 68017862 | 68017981 | 68017862 | ID=Msa1119170-mRNA-1:exon:16938;Parent=Msa1119170-mRNA-1 |
| chr7_3 | exon | 68018103 | 68018303 | 68018103 | ID=Msa1119170-mRNA-1:exon:16939;Parent=Msa1119170-mRNA-1 |
| chr7_3 | exon | 68019064 | 68019455 | 68019064 | ID=Msa1119170-mRNA-1:exon:16940;Parent=Msa1119170-mRNA-1 |
| chr7_3 | five_prime_UTR | 68017862 | 68017981 | 68017862 | ID=Msa1119170-mRNA-1:five_prime_utr;Parent=Msa1119170-mRNA-1 |
| chr7_3 | five_prime_UTR | 68018103 | 68018112 | 68018103 | ID=Msa1119170-mRNA-1:five_prime_utr;Parent=Msa1119170-mRNA-1 |
| chr7_3 | CDS | 68018113 | 68018303 | 68018113 | ID=Msa1119170-mRNA-1:cds;Parent=Msa1119170-mRNA-1 |
| chr7_3 | CDS | 68019064 | 68019265 | 68019064 | ID=Msa1119170-mRNA-1:cds;Parent=Msa1119170-mRNA-1 |
| chr7_3 | three_prime_UTR | 68019266 | 68019455 | 68019266 | ID=Msa1119170-mRNA-1:three_prime_utr;Parent=Msa1119170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
