AlfalfaGEDB | Msa1119070

M. sativa cultivar zhongmu-4 / Msa1119070

KEGG: K01633
GO: GO:0003674 GO:0003824 GO:0004150 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0016829 GO:0016830 GO:0016832 GO:0044424 GO:0044444 GO:0044464
PFAM: PF02152.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119070	XP_013450239.1	94.615	130	7	0	1	130	1	130	1.12e-82	248

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119070	sp\|Q9FM54\|FOLB2_ARATH	65.079	126	43	1	2	126	4	129	8.31e-52	163

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119070	A0A072U3F9	94.615	130	7	0	1	130	1	130	5.35e-83	248

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0275080	Msa1119070	0.803274	3.769531e-49	-8.615850e-47
Msa0315980	Msa1119070	0.812920	3.325776e-51	-8.615850e-47
Msa0434920	Msa1119070	0.808000	3.839281e-50	-8.615850e-47
Msa0435420	Msa1119070	0.800946	1.135045e-48	-8.615850e-47
Msa0478870	Msa1119070	0.800608	1.330958e-48	-8.615850e-47
Msa0677650	Msa1119070	0.806366	8.518564e-50	-8.615850e-47
Msa0709780	Msa1119070	0.814516	1.480518e-51	-8.615850e-47
Msa0867060	Msa1119070	0.826943	2.055463e-54	-8.615850e-47
Msa1037640	Msa1119070	0.802005	6.887021e-49	-8.615850e-47
Msa1119070	Msa1119170	0.994668	3.554276e-209	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119070	MtrunA17_Chr7g0267671	94.615	130	7	1	130	1	130	1.03e-86	248
Msa1119070	MtrunA17_Chr2g0322821	85.271	129	19	1	129	15	143	2.94e-79	230
Msa1119070	MtrunA17_Chr7g0267651	82.946	129	22	2	130	5	133	1.76e-74	217

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1119070	AT5G62980.2	65.079	126	43	1	2	126	4	129	8.45e-53	163
Msa1119070	AT5G62980.1	65.079	126	43	1	2	126	4	129	8.45e-53	163
Msa1119070	AT3G11750.1	61.983	121	45	1	7	126	21	141	2.69e-49	154
Msa1119070	AT3G21730.1	50.000	120	59	1	8	126	40	159	9.27e-39	128
Msa1119070	AT3G21730.2	43.750	64	35	1	64	126	12	75	4.29e-13	60.5

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Find 37 sgRNAs with CRISPR-Local

Find 183 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGATGCGTTAATAGG+TGG	0.579943	7_3:+67926253	Msa1119070:exon
AAAGCCTCATGTGGCTATTC+AGG	0.228909	7_3:+67927328	Msa1119070:CDS
AAATGATCAGAAATTCCAGC+TGG	0.574592	7_3:-67926391	None:intergenic
AAGCCTCATGTGGCTATTCA+GGG	0.505045	7_3:+67927329	Msa1119070:CDS
ACAGTGAGTGAGTGAGTGAC+TGG	0.609773	7_3:+67926077	Msa1119070:five_prime_UTR
AGGACCAGCTCAAAACCTTC+TGG	0.353642	7_3:+67927229	Msa1119070:CDS
AGTTATTTGATTGGAGAGAC+GGG	0.503862	7_3:-67926046	None:intergenic
AGTTTCATATTTACTACTGC+TGG	0.453178	7_3:+67927411	Msa1119070:three_prime_UTR
ATAGCTAAGGAAGTTGTTGA+AGG	0.569588	7_3:+67927209	Msa1119070:CDS
ATTATTGTATCAAACAGAAT+TGG	0.367027	7_3:-67927447	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTGAACCTCAGTTATTTGAT+TGG	-	chr7_3:67926058-67926077	None:intergenic	30.0%
TAATTGCAGGAGCAAAAAAA+TGG	+	chr7_3:67926237-67926256	Msa1119070:intron	30.0%
ATAAAGGAAGAAAAAACCCT+TGG	+	chr7_3:67926325-67926344	Msa1119070:CDS	30.0%
TTAGCTACGCTGAAATATAT+CGG	+	chr7_3:67926425-67926444	Msa1119070:CDS	30.0%
TGTTAATGGTAAATTTGTCC+AGG	+	chr7_3:67926713-67926732	Msa1119070:intron	30.0%
GTTAATGGTAAATTTGTCCA+GGG	+	chr7_3:67926714-67926733	Msa1119070:intron	30.0%
AGTTTCATATTTACTACTGC+TGG	+	chr7_3:67927411-67927430	Msa1119070:three_prime_UTR	30.0%
TTGAACCTCAGTTATTTGAT+TGG	-	chr7_3:67926058-67926077	None:intergenic	30.0%
TAATTGCAGGAGCAAAAAAA+TGG	+	chr7_3:67926237-67926256	Msa1119070:intron	30.0%
ATAAAGGAAGAAAAAACCCT+TGG	+	chr7_3:67926325-67926344	Msa1119070:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	67926009	67927599	67926009	ID=Msa1119070;Name=Msa1119070
chr7_3	mRNA	67926009	67927599	67926009	ID=Msa1119070-mRNA-1;Parent=Msa1119070;Name=Msa1119070-mRNA-1;_AED=0.26;_eAED=0.26;_QI=130\|1\|1\|1\|0.5\|0.33\|3\|190\|130
chr7_3	exon	67926009	67926128	67926009	ID=Msa1119070-mRNA-1:exon:16852;Parent=Msa1119070-mRNA-1
chr7_3	exon	67926246	67926446	67926246	ID=Msa1119070-mRNA-1:exon:16853;Parent=Msa1119070-mRNA-1
chr7_3	exon	67927208	67927599	67927208	ID=Msa1119070-mRNA-1:exon:16854;Parent=Msa1119070-mRNA-1
chr7_3	five_prime_UTR	67926009	67926128	67926009	ID=Msa1119070-mRNA-1:five_prime_utr;Parent=Msa1119070-mRNA-1
chr7_3	five_prime_UTR	67926246	67926255	67926246	ID=Msa1119070-mRNA-1:five_prime_utr;Parent=Msa1119070-mRNA-1
chr7_3	CDS	67926256	67926446	67926256	ID=Msa1119070-mRNA-1:cds;Parent=Msa1119070-mRNA-1
chr7_3	CDS	67927208	67927409	67927208	ID=Msa1119070-mRNA-1:cds;Parent=Msa1119070-mRNA-1
chr7_3	three_prime_UTR	67927410	67927599	67927410	ID=Msa1119070-mRNA-1:three_prime_utr;Parent=Msa1119070-mRNA-1

Gene Sequence

>Msa1119070

ATGGATGCGTTAATAGGTGGAGACAAACTGATTCTGAGGGGATTGACATTCTTTGGTTTTCATGGAGCAATAAAGGAAGAAAAAACCCTTGGACAGAAGTTCGTTGTAGATATAGATGCTTGGATGGATCTTAAACCAGCTGGAATTTCTGATCATTTGTCTGATACTTTTAGCTACGCTGAAATATATCGTATAGCTAAGGAAGTTGTTGAAGGACCAGCTCAAAACCTTCTGGAATCAGTGGCCCAAAAAATTGCAATCTCCACTTTGACAATTCACAAAGAGATATCTGCTGTTCGTGTGAAGATCGGAAAGCCTCATGTGGCTATTCAGGGTCCGGTTGATTACTTAGGCGTTGAGATTCTGAGACGCAGAAGCGATTTGACAGACTAG

Protein sequence

>Msa1119070

MDALIGGDKLILRGLTFFGFHGAIKEEKTLGQKFVVDIDAWMDLKPAGISDHLSDTFSYAEIYRIAKEVVEGPAQNLLESVAQKIAISTLTIHKEISAVRVKIGKPHVAIQGPVDYLGVEILRRRSDLTD*