Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119070 | XP_013450239.1 | 94.615 | 130 | 7 | 0 | 1 | 130 | 1 | 130 | 1.12e-82 | 248 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119070 | sp|Q9FM54|FOLB2_ARATH | 65.079 | 126 | 43 | 1 | 2 | 126 | 4 | 129 | 8.31e-52 | 163 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119070 | A0A072U3F9 | 94.615 | 130 | 7 | 0 | 1 | 130 | 1 | 130 | 5.35e-83 | 248 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0677650 | Msa1119070 | 0.806366 | 8.518564e-50 | -8.615850e-47 |
| Msa0709780 | Msa1119070 | 0.814516 | 1.480518e-51 | -8.615850e-47 |
| Msa0434920 | Msa1119070 | 0.808000 | 3.839281e-50 | -8.615850e-47 |
| Msa0435420 | Msa1119070 | 0.800946 | 1.135045e-48 | -8.615850e-47 |
| Msa0478870 | Msa1119070 | 0.800608 | 1.330958e-48 | -8.615850e-47 |
| Msa1037640 | Msa1119070 | 0.802005 | 6.887021e-49 | -8.615850e-47 |
| Msa0275080 | Msa1119070 | 0.803274 | 3.769531e-49 | -8.615850e-47 |
| Msa0315980 | Msa1119070 | 0.812920 | 3.325776e-51 | -8.615850e-47 |
| Msa1119070 | Msa1119170 | 0.994668 | 3.554276e-209 | -8.615850e-47 |
| Msa1119070 | Msa1258710 | 0.818284 | 2.124432e-52 | -8.615850e-47 |
| Msa1119070 | Msa1266060 | 0.830677 | 2.566279e-55 | -8.615850e-47 |
| Msa1119070 | Msa1333560 | 0.811856 | 5.677958e-51 | -8.615850e-47 |
| Msa1119070 | Msa1380380 | 0.994254 | 8.968278e-206 | -8.615850e-47 |
| Msa1119070 | Msa1410440 | 0.834119 | 3.602581e-56 | -8.615850e-47 |
| Msa1119070 | Msa1449930 | 0.809172 | 2.157616e-50 | -8.615850e-47 |
| Msa0867060 | Msa1119070 | 0.826943 | 2.055463e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119070 | MtrunA17_Chr7g0267671 | 94.615 | 130 | 7 | 0 | 1 | 130 | 1 | 130 | 1.03e-86 | 248 |
| Msa1119070 | MtrunA17_Chr2g0322821 | 85.271 | 129 | 19 | 0 | 1 | 129 | 15 | 143 | 2.94e-79 | 230 |
| Msa1119070 | MtrunA17_Chr7g0267651 | 82.946 | 129 | 22 | 0 | 2 | 130 | 5 | 133 | 1.76e-74 | 217 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1119070 | AT5G62980.2 | 65.079 | 126 | 43 | 1 | 2 | 126 | 4 | 129 | 8.45e-53 | 163 |
| Msa1119070 | AT5G62980.1 | 65.079 | 126 | 43 | 1 | 2 | 126 | 4 | 129 | 8.45e-53 | 163 |
| Msa1119070 | AT3G11750.1 | 61.983 | 121 | 45 | 1 | 7 | 126 | 21 | 141 | 2.69e-49 | 154 |
| Msa1119070 | AT3G21730.1 | 50.000 | 120 | 59 | 1 | 8 | 126 | 40 | 159 | 9.27e-39 | 128 |
| Msa1119070 | AT3G21730.2 | 43.750 | 64 | 35 | 1 | 64 | 126 | 12 | 75 | 4.29e-13 | 60.5 |
Find 37 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGAGGGGATTGACATTCTT+TGG | 0.182580 | 7_3:+67926289 | Msa1119070:CDS |
| AAAGCCTCATGTGGCTATTC+AGG | 0.228909 | 7_3:+67927328 | Msa1119070:CDS |
| GAAACTATAAGCAGATAATT+TGG | 0.259747 | 7_3:+67927529 | Msa1119070:three_prime_UTR |
| AGGACCAGCTCAAAACCTTC+TGG | 0.353642 | 7_3:+67927229 | Msa1119070:CDS |
| ATTATTGTATCAAACAGAAT+TGG | 0.367027 | 7_3:-67927447 | None:intergenic |
| TTGAACCTCAGTTATTTGAT+TGG | 0.374751 | 7_3:-67926055 | None:intergenic |
| TTAGCTACGCTGAAATATAT+CGG | 0.447993 | 7_3:+67926425 | Msa1119070:CDS |
| AGTTTCATATTTACTACTGC+TGG | 0.453178 | 7_3:+67927411 | Msa1119070:three_prime_UTR |
| TCAACGCCTAAGTAATCAAC+CGG | 0.493700 | 7_3:-67927353 | None:intergenic |
| CAGTTATTTGATTGGAGAGA+CGG | 0.500268 | 7_3:-67926047 | None:intergenic |
| TCATGTGGCTATTCAGGGTC+CGG | 0.501646 | 7_3:+67927334 | Msa1119070:CDS |
| AGTTATTTGATTGGAGAGAC+GGG | 0.503862 | 7_3:-67926046 | None:intergenic |
| AAGCCTCATGTGGCTATTCA+GGG | 0.505045 | 7_3:+67927329 | Msa1119070:CDS |
| TGGATGGATCTTAAACCAGC+TGG | 0.524717 | 7_3:+67926376 | Msa1119070:CDS |
| CAGGGTCCGGTTGATTACTT+AGG | 0.534205 | 7_3:+67927347 | Msa1119070:CDS |
| CTACAACGAACTTCTGTCCA+AGG | 0.552732 | 7_3:-67926342 | None:intergenic |
| CTCTTTGTGAATTGTCAAAG+TGG | 0.557952 | 7_3:-67927279 | None:intergenic |
| GTGGAGACAAACTGATTCTG+AGG | 0.567883 | 7_3:+67926272 | Msa1119070:CDS |
| TACAACGAACTTCTGTCCAA+GGG | 0.568116 | 7_3:-67926341 | None:intergenic |
| TCTGCTGTTCGTGTGAAGAT+CGG | 0.568597 | 7_3:+67927305 | Msa1119070:CDS |
| ATAGCTAAGGAAGTTGTTGA+AGG | 0.569588 | 7_3:+67927209 | Msa1119070:CDS |
| AAATGATCAGAAATTCCAGC+TGG | 0.574592 | 7_3:-67926391 | None:intergenic |
| AAAATGGATGCGTTAATAGG+TGG | 0.579943 | 7_3:+67926253 | Msa1119070:exon |
| TGTAGATATAGATGCTTGGA+TGG | 0.580239 | 7_3:+67926360 | Msa1119070:CDS |
| TGGAGACAAACTGATTCTGA+GGG | 0.582302 | 7_3:+67926273 | Msa1119070:CDS |
| CCGCAGAGAGATATGACGAT+TGG | 0.587929 | 7_3:-67926107 | None:intergenic |
| TGGTTGATGCAGTATAGCTA+AGG | 0.588966 | 7_3:+67927196 | Msa1119070:intron |
| TCGTTGTAGATATAGATGCT+TGG | 0.592315 | 7_3:+67926356 | Msa1119070:CDS |
| TCAAAACCTTCTGGAATCAG+TGG | 0.595819 | 7_3:+67927238 | Msa1119070:CDS |
| TTTGGGCCACTGATTCCAGA+AGG | 0.599019 | 7_3:-67927244 | None:intergenic |
| ACAGTGAGTGAGTGAGTGAC+TGG | 0.609773 | 7_3:+67926077 | Msa1119070:five_prime_UTR |
| GTTATTTGATTGGAGAGACG+GGG | 0.665380 | 7_3:-67926045 | None:intergenic |
| GAAGATCGGAAAGCCTCATG+TGG | 0.680483 | 7_3:+67927319 | Msa1119070:CDS |
| GGACCCTGAATAGCCACATG+AGG | 0.705107 | 7_3:-67927332 | None:intergenic |
| TCTCTCCAATCAAATAACTG+AGG | 0.708232 | 7_3:+67926050 | Msa1119070:five_prime_UTR |
| CCAATCGTCATATCTCTCTG+CGG | 0.734128 | 7_3:+67926107 | Msa1119070:five_prime_UTR |
| GGAGACAAACTGATTCTGAG+GGG | 0.749444 | 7_3:+67926274 | Msa1119070:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTAAATTAAATAGTAG+TGG | - | chr7_3:67926609-67926628 | None:intergenic | 10.0% |
| !! | TAAATCTGAAAAATAAATAA+CGG | + | chr7_3:67926687-67926706 | Msa1119070:intron | 10.0% |
| !! | TAAATTAAATTAAATAGTAG+TGG | - | chr7_3:67926609-67926628 | None:intergenic | 10.0% |
| !! | TAAATCTGAAAAATAAATAA+CGG | + | chr7_3:67926687-67926706 | Msa1119070:intron | 10.0% |
| !! | TATACTGCTATAAATTATAA+TGG | + | chr7_3:67926768-67926787 | Msa1119070:intron | 15.0% |
| !! | AAATACAATTCAAAATAACA+GGG | - | chr7_3:67926828-67926847 | None:intergenic | 15.0% |
| !! | TATACTGCTATAAATTATAA+TGG | + | chr7_3:67926768-67926787 | Msa1119070:intron | 15.0% |
| !! | AAATACAATTCAAAATAACA+GGG | - | chr7_3:67926828-67926847 | None:intergenic | 15.0% |
| !! | GAGTTTATTTATTTAATTGC+AGG | + | chr7_3:67926224-67926243 | Msa1119070:intron | 20.0% |
| !! | TCATAAGAATAATGATAAAG+TGG | - | chr7_3:67926464-67926483 | None:intergenic | 20.0% |
| !! | ATCTACAGTATAATTTGAAT+TGG | - | chr7_3:67926666-67926685 | None:intergenic | 20.0% |
| !! | GAAATACAATTCAAAATAAC+AGG | - | chr7_3:67926829-67926848 | None:intergenic | 20.0% |
| !! | CTAAAACAGAAGATAAAATA+CGG | - | chr7_3:67927062-67927081 | None:intergenic | 20.0% |
| !!! | TCAAAAATTACTCTTCTTTT+GGG | - | chr7_3:67927124-67927143 | None:intergenic | 20.0% |
| !! | ATTATTGTATCAAACAGAAT+TGG | - | chr7_3:67927450-67927469 | None:intergenic | 20.0% |
| !!! | AACATCAAATCTACTATTTT+TGG | - | chr7_3:67926009-67926028 | None:intergenic | 20.0% |
| !! | GAGTTTATTTATTTAATTGC+AGG | + | chr7_3:67926224-67926243 | Msa1119070:intron | 20.0% |
| !! | TCATAAGAATAATGATAAAG+TGG | - | chr7_3:67926464-67926483 | None:intergenic | 20.0% |
| !! | ATCTACAGTATAATTTGAAT+TGG | - | chr7_3:67926666-67926685 | None:intergenic | 20.0% |
| !! | GAAATACAATTCAAAATAAC+AGG | - | chr7_3:67926829-67926848 | None:intergenic | 20.0% |
| !! | CTAAAACAGAAGATAAAATA+CGG | - | chr7_3:67927062-67927081 | None:intergenic | 20.0% |
| !!! | TCAAAAATTACTCTTCTTTT+GGG | - | chr7_3:67927124-67927143 | None:intergenic | 20.0% |
| !! | ATTATTGTATCAAACAGAAT+TGG | - | chr7_3:67927450-67927469 | None:intergenic | 20.0% |
| ! | AAAAAAATGGATGCGTTAAT+AGG | + | chr7_3:67926250-67926269 | Msa1119070:exon | 25.0% |
| !!! | TTATGAGTGAGTATTGAAAA+TGG | + | chr7_3:67926560-67926579 | Msa1119070:intron | 25.0% |
| !! | ATAAATAACGGAGTTGTTAA+TGG | + | chr7_3:67926699-67926718 | Msa1119070:intron | 25.0% |
| ! | AAATTTAATATCATCAACCC+TGG | - | chr7_3:67926734-67926753 | None:intergenic | 25.0% |
| !! | TGAATAGTTTGTGCTTAATT+TGG | + | chr7_3:67926849-67926868 | Msa1119070:intron | 25.0% |
| ! | TTAACATTCTGAACATACTT+TGG | + | chr7_3:67926873-67926892 | Msa1119070:intron | 25.0% |
| ! | TAACATTCTGAACATACTTT+GGG | + | chr7_3:67926874-67926893 | Msa1119070:intron | 25.0% |
| !!! | GGTCAAACTGTTTTAAAATA+AGG | - | chr7_3:67927041-67927060 | None:intergenic | 25.0% |
| !! | CTCAAAAATTACTCTTCTTT+TGG | - | chr7_3:67927125-67927144 | None:intergenic | 25.0% |
| !! | CAAAAGAAGAGTAATTTTTG+AGG | + | chr7_3:67927123-67927142 | Msa1119070:intron | 25.0% |
| ! | TTAAACTAAACATACACACT+TGG | + | chr7_3:67927176-67927195 | Msa1119070:intron | 25.0% |
| ! | GAAACTATAAGCAGATAATT+TGG | + | chr7_3:67927529-67927548 | Msa1119070:three_prime_UTR | 25.0% |
| ! | AAAAAAATGGATGCGTTAAT+AGG | + | chr7_3:67926250-67926269 | Msa1119070:exon | 25.0% |
| !!! | TTATGAGTGAGTATTGAAAA+TGG | + | chr7_3:67926560-67926579 | Msa1119070:intron | 25.0% |
| !! | ATAAATAACGGAGTTGTTAA+TGG | + | chr7_3:67926699-67926718 | Msa1119070:intron | 25.0% |
| ! | AAATTTAATATCATCAACCC+TGG | - | chr7_3:67926734-67926753 | None:intergenic | 25.0% |
| !! | TGAATAGTTTGTGCTTAATT+TGG | + | chr7_3:67926849-67926868 | Msa1119070:intron | 25.0% |
| ! | TTAACATTCTGAACATACTT+TGG | + | chr7_3:67926873-67926892 | Msa1119070:intron | 25.0% |
| ! | TAACATTCTGAACATACTTT+GGG | + | chr7_3:67926874-67926893 | Msa1119070:intron | 25.0% |
| !!! | GGTCAAACTGTTTTAAAATA+AGG | - | chr7_3:67927041-67927060 | None:intergenic | 25.0% |
| !! | CTCAAAAATTACTCTTCTTT+TGG | - | chr7_3:67927125-67927144 | None:intergenic | 25.0% |
| !! | CAAAAGAAGAGTAATTTTTG+AGG | + | chr7_3:67927123-67927142 | Msa1119070:intron | 25.0% |
| ! | TTAAACTAAACATACACACT+TGG | + | chr7_3:67927176-67927195 | Msa1119070:intron | 25.0% |
| ! | GAAACTATAAGCAGATAATT+TGG | + | chr7_3:67927529-67927548 | Msa1119070:three_prime_UTR | 25.0% |
| TTGAACCTCAGTTATTTGAT+TGG | - | chr7_3:67926058-67926077 | None:intergenic | 30.0% | |
| TAATTGCAGGAGCAAAAAAA+TGG | + | chr7_3:67926237-67926256 | Msa1119070:intron | 30.0% | |
| !!! | TTGACATTCTTTGGTTTTCA+TGG | + | chr7_3:67926298-67926317 | Msa1119070:CDS | 30.0% |
| ATAAAGGAAGAAAAAACCCT+TGG | + | chr7_3:67926325-67926344 | Msa1119070:CDS | 30.0% | |
| TTAGCTACGCTGAAATATAT+CGG | + | chr7_3:67926425-67926444 | Msa1119070:CDS | 30.0% | |
| !!! | GAGTGAGTGTTGAATATTTT+TGG | + | chr7_3:67926533-67926552 | Msa1119070:intron | 30.0% |
| TGTTAATGGTAAATTTGTCC+AGG | + | chr7_3:67926713-67926732 | Msa1119070:intron | 30.0% | |
| GTTAATGGTAAATTTGTCCA+GGG | + | chr7_3:67926714-67926733 | Msa1119070:intron | 30.0% | |
| ! | CAAGCATTGTGAAACTATTT+AGG | + | chr7_3:67926935-67926954 | Msa1119070:intron | 30.0% |
| !!! | AGTGGAGATTGCAATTTTTT+GGG | - | chr7_3:67927264-67927283 | None:intergenic | 30.0% |
| !!! | AAGTGGAGATTGCAATTTTT+TGG | - | chr7_3:67927265-67927284 | None:intergenic | 30.0% |
| AGTTTCATATTTACTACTGC+TGG | + | chr7_3:67927411-67927430 | Msa1119070:three_prime_UTR | 30.0% | |
| TTGAACCTCAGTTATTTGAT+TGG | - | chr7_3:67926058-67926077 | None:intergenic | 30.0% | |
| TAATTGCAGGAGCAAAAAAA+TGG | + | chr7_3:67926237-67926256 | Msa1119070:intron | 30.0% | |
| !!! | TTGACATTCTTTGGTTTTCA+TGG | + | chr7_3:67926298-67926317 | Msa1119070:CDS | 30.0% |
| ATAAAGGAAGAAAAAACCCT+TGG | + | chr7_3:67926325-67926344 | Msa1119070:CDS | 30.0% | |
| TTAGCTACGCTGAAATATAT+CGG | + | chr7_3:67926425-67926444 | Msa1119070:CDS | 30.0% | |
| !!! | GAGTGAGTGTTGAATATTTT+TGG | + | chr7_3:67926533-67926552 | Msa1119070:intron | 30.0% |
| TGTTAATGGTAAATTTGTCC+AGG | + | chr7_3:67926713-67926732 | Msa1119070:intron | 30.0% | |
| GTTAATGGTAAATTTGTCCA+GGG | + | chr7_3:67926714-67926733 | Msa1119070:intron | 30.0% | |
| ! | CAAGCATTGTGAAACTATTT+AGG | + | chr7_3:67926935-67926954 | Msa1119070:intron | 30.0% |
| !!! | AGTGGAGATTGCAATTTTTT+GGG | - | chr7_3:67927264-67927283 | None:intergenic | 30.0% |
| !!! | AAGTGGAGATTGCAATTTTT+TGG | - | chr7_3:67927265-67927284 | None:intergenic | 30.0% |
| AGTTTCATATTTACTACTGC+TGG | + | chr7_3:67927411-67927430 | Msa1119070:three_prime_UTR | 30.0% | |
| AGTTATTTGATTGGAGAGAC+GGG | - | chr7_3:67926049-67926068 | None:intergenic | 35.0% | |
| CAGTTATTTGATTGGAGAGA+CGG | - | chr7_3:67926050-67926069 | None:intergenic | 35.0% | |
| TCTCTCCAATCAAATAACTG+AGG | + | chr7_3:67926050-67926069 | Msa1119070:five_prime_UTR | 35.0% | |
| ATGTAATGGCAAACAATGAG+GGG | - | chr7_3:67926145-67926164 | None:intergenic | 35.0% | |
| CATGTAATGGCAAACAATGA+GGG | - | chr7_3:67926146-67926165 | None:intergenic | 35.0% | |
| AAAATGGATGCGTTAATAGG+TGG | + | chr7_3:67926253-67926272 | Msa1119070:exon | 35.0% | |
| ! | TGGTTTTCATGGAGCAATAA+AGG | + | chr7_3:67926309-67926328 | Msa1119070:CDS | 35.0% |
| TCGTTGTAGATATAGATGCT+TGG | + | chr7_3:67926356-67926375 | Msa1119070:CDS | 35.0% | |
| TGTAGATATAGATGCTTGGA+TGG | + | chr7_3:67926360-67926379 | Msa1119070:CDS | 35.0% | |
| AAATGATCAGAAATTCCAGC+TGG | - | chr7_3:67926394-67926413 | None:intergenic | 35.0% | |
| TCACTCTGAGCATTAAGTTT+AGG | - | chr7_3:67926519-67926538 | None:intergenic | 35.0% | |
| ! | GAACATACTTTGGGTTTGTT+TGG | + | chr7_3:67926883-67926902 | Msa1119070:intron | 35.0% |
| GAGTTTATGGGAAATAAGCT+TGG | - | chr7_3:67926989-67927008 | None:intergenic | 35.0% | |
| AGCTATCGTTGAGAGTTTAT+GGG | - | chr7_3:67927001-67927020 | None:intergenic | 35.0% | |
| AAGCTATCGTTGAGAGTTTA+TGG | - | chr7_3:67927002-67927021 | None:intergenic | 35.0% | |
| !! | TACTCTTCTTTTGGGAACAA+AGG | - | chr7_3:67927116-67927135 | None:intergenic | 35.0% |
| AAGCTCCACAAACATATGTT+TGG | - | chr7_3:67927149-67927168 | None:intergenic | 35.0% | |
| ATAGCTAAGGAAGTTGTTGA+AGG | + | chr7_3:67927209-67927228 | Msa1119070:CDS | 35.0% | |
| CTCTTTGTGAATTGTCAAAG+TGG | - | chr7_3:67927282-67927301 | None:intergenic | 35.0% | |
| AGTTATTTGATTGGAGAGAC+GGG | - | chr7_3:67926049-67926068 | None:intergenic | 35.0% | |
| CAGTTATTTGATTGGAGAGA+CGG | - | chr7_3:67926050-67926069 | None:intergenic | 35.0% | |
| TCTCTCCAATCAAATAACTG+AGG | + | chr7_3:67926050-67926069 | Msa1119070:five_prime_UTR | 35.0% | |
| ATGTAATGGCAAACAATGAG+GGG | - | chr7_3:67926145-67926164 | None:intergenic | 35.0% | |
| CATGTAATGGCAAACAATGA+GGG | - | chr7_3:67926146-67926165 | None:intergenic | 35.0% | |
| AAAATGGATGCGTTAATAGG+TGG | + | chr7_3:67926253-67926272 | Msa1119070:exon | 35.0% | |
| ! | TGGTTTTCATGGAGCAATAA+AGG | + | chr7_3:67926309-67926328 | Msa1119070:CDS | 35.0% |
| TCGTTGTAGATATAGATGCT+TGG | + | chr7_3:67926356-67926375 | Msa1119070:CDS | 35.0% | |
| TGTAGATATAGATGCTTGGA+TGG | + | chr7_3:67926360-67926379 | Msa1119070:CDS | 35.0% | |
| AAATGATCAGAAATTCCAGC+TGG | - | chr7_3:67926394-67926413 | None:intergenic | 35.0% | |
| TCACTCTGAGCATTAAGTTT+AGG | - | chr7_3:67926519-67926538 | None:intergenic | 35.0% | |
| ! | GAACATACTTTGGGTTTGTT+TGG | + | chr7_3:67926883-67926902 | Msa1119070:intron | 35.0% |
| GAGTTTATGGGAAATAAGCT+TGG | - | chr7_3:67926989-67927008 | None:intergenic | 35.0% | |
| AGCTATCGTTGAGAGTTTAT+GGG | - | chr7_3:67927001-67927020 | None:intergenic | 35.0% | |
| AAGCTATCGTTGAGAGTTTA+TGG | - | chr7_3:67927002-67927021 | None:intergenic | 35.0% | |
| !! | TACTCTTCTTTTGGGAACAA+AGG | - | chr7_3:67927116-67927135 | None:intergenic | 35.0% |
| AAGCTCCACAAACATATGTT+TGG | - | chr7_3:67927149-67927168 | None:intergenic | 35.0% | |
| ATAGCTAAGGAAGTTGTTGA+AGG | + | chr7_3:67927209-67927228 | Msa1119070:CDS | 35.0% | |
| CTCTTTGTGAATTGTCAAAG+TGG | - | chr7_3:67927282-67927301 | None:intergenic | 35.0% | |
| GTTATTTGATTGGAGAGACG+GGG | - | chr7_3:67926048-67926067 | None:intergenic | 40.0% | |
| TGTAATGGCAAACAATGAGG+GGG | - | chr7_3:67926144-67926163 | None:intergenic | 40.0% | |
| GCATGTAATGGCAAACAATG+AGG | - | chr7_3:67926147-67926166 | None:intergenic | 40.0% | |
| CTCTCTCTCTCTACTACTTT+AGG | + | chr7_3:67926192-67926211 | Msa1119070:intron | 40.0% | |
| ! | TGGAGACAAACTGATTCTGA+GGG | + | chr7_3:67926273-67926292 | Msa1119070:CDS | 40.0% |
| TACAACGAACTTCTGTCCAA+GGG | - | chr7_3:67926344-67926363 | None:intergenic | 40.0% | |
| TGAGGCCAAACATATGTTTG+TGG | + | chr7_3:67927141-67927160 | Msa1119070:intron | 40.0% | |
| ! | TGGTTGATGCAGTATAGCTA+AGG | + | chr7_3:67927196-67927215 | Msa1119070:intron | 40.0% |
| !! | TCAAAACCTTCTGGAATCAG+TGG | + | chr7_3:67927238-67927257 | Msa1119070:CDS | 40.0% |
| TCAACGCCTAAGTAATCAAC+CGG | - | chr7_3:67927356-67927375 | None:intergenic | 40.0% | |
| GTTATTTGATTGGAGAGACG+GGG | - | chr7_3:67926048-67926067 | None:intergenic | 40.0% | |
| TGTAATGGCAAACAATGAGG+GGG | - | chr7_3:67926144-67926163 | None:intergenic | 40.0% | |
| GCATGTAATGGCAAACAATG+AGG | - | chr7_3:67926147-67926166 | None:intergenic | 40.0% | |
| CTCTCTCTCTCTACTACTTT+AGG | + | chr7_3:67926192-67926211 | Msa1119070:intron | 40.0% | |
| ! | TGGAGACAAACTGATTCTGA+GGG | + | chr7_3:67926273-67926292 | Msa1119070:CDS | 40.0% |
| TACAACGAACTTCTGTCCAA+GGG | - | chr7_3:67926344-67926363 | None:intergenic | 40.0% | |
| TGAGGCCAAACATATGTTTG+TGG | + | chr7_3:67927141-67927160 | Msa1119070:intron | 40.0% | |
| ! | TGGTTGATGCAGTATAGCTA+AGG | + | chr7_3:67927196-67927215 | Msa1119070:intron | 40.0% |
| !! | TCAAAACCTTCTGGAATCAG+TGG | + | chr7_3:67927238-67927257 | Msa1119070:CDS | 40.0% |
| TCAACGCCTAAGTAATCAAC+CGG | - | chr7_3:67927356-67927375 | None:intergenic | 40.0% | |
| CCAATCGTCATATCTCTCTG+CGG | + | chr7_3:67926107-67926126 | Msa1119070:five_prime_UTR | 45.0% | |
| TAATGGCAAACAATGAGGGG+GGG | - | chr7_3:67926142-67926161 | None:intergenic | 45.0% | |
| GTAATGGCAAACAATGAGGG+GGG | - | chr7_3:67926143-67926162 | None:intergenic | 45.0% | |
| GAGAGAGATAACGAGTGTGA+GGG | - | chr7_3:67926173-67926192 | None:intergenic | 45.0% | |
| AGAGAGAGATAACGAGTGTG+AGG | - | chr7_3:67926174-67926193 | None:intergenic | 45.0% | |
| ! | GTGGAGACAAACTGATTCTG+AGG | + | chr7_3:67926272-67926291 | Msa1119070:CDS | 45.0% |
| ! | GGAGACAAACTGATTCTGAG+GGG | + | chr7_3:67926274-67926293 | Msa1119070:CDS | 45.0% |
| CTGAGGGGATTGACATTCTT+TGG | + | chr7_3:67926289-67926308 | Msa1119070:CDS | 45.0% | |
| CTACAACGAACTTCTGTCCA+AGG | - | chr7_3:67926345-67926364 | None:intergenic | 45.0% | |
| TGGATGGATCTTAAACCAGC+TGG | + | chr7_3:67926376-67926395 | Msa1119070:CDS | 45.0% | |
| GGCAGTACCAATGTTAGACT+CGG | - | chr7_3:67926807-67926826 | None:intergenic | 45.0% | |
| !!! | GATTCCAGAAGGTTTTGAGC+TGG | - | chr7_3:67927236-67927255 | None:intergenic | 45.0% |
| TCTGCTGTTCGTGTGAAGAT+CGG | + | chr7_3:67927305-67927324 | Msa1119070:CDS | 45.0% | |
| AAAGCCTCATGTGGCTATTC+AGG | + | chr7_3:67927328-67927347 | Msa1119070:CDS | 45.0% | |
| AAGCCTCATGTGGCTATTCA+GGG | + | chr7_3:67927329-67927348 | Msa1119070:CDS | 45.0% | |
| CCAATCGTCATATCTCTCTG+CGG | + | chr7_3:67926107-67926126 | Msa1119070:five_prime_UTR | 45.0% | |
| TAATGGCAAACAATGAGGGG+GGG | - | chr7_3:67926142-67926161 | None:intergenic | 45.0% | |
| GTAATGGCAAACAATGAGGG+GGG | - | chr7_3:67926143-67926162 | None:intergenic | 45.0% | |
| GAGAGAGATAACGAGTGTGA+GGG | - | chr7_3:67926173-67926192 | None:intergenic | 45.0% | |
| AGAGAGAGATAACGAGTGTG+AGG | - | chr7_3:67926174-67926193 | None:intergenic | 45.0% | |
| ! | GTGGAGACAAACTGATTCTG+AGG | + | chr7_3:67926272-67926291 | Msa1119070:CDS | 45.0% |
| ! | GGAGACAAACTGATTCTGAG+GGG | + | chr7_3:67926274-67926293 | Msa1119070:CDS | 45.0% |
| CTGAGGGGATTGACATTCTT+TGG | + | chr7_3:67926289-67926308 | Msa1119070:CDS | 45.0% | |
| CTACAACGAACTTCTGTCCA+AGG | - | chr7_3:67926345-67926364 | None:intergenic | 45.0% | |
| TGGATGGATCTTAAACCAGC+TGG | + | chr7_3:67926376-67926395 | Msa1119070:CDS | 45.0% | |
| GGCAGTACCAATGTTAGACT+CGG | - | chr7_3:67926807-67926826 | None:intergenic | 45.0% | |
| !!! | GATTCCAGAAGGTTTTGAGC+TGG | - | chr7_3:67927236-67927255 | None:intergenic | 45.0% |
| TCTGCTGTTCGTGTGAAGAT+CGG | + | chr7_3:67927305-67927324 | Msa1119070:CDS | 45.0% | |
| AAAGCCTCATGTGGCTATTC+AGG | + | chr7_3:67927328-67927347 | Msa1119070:CDS | 45.0% | |
| AAGCCTCATGTGGCTATTCA+GGG | + | chr7_3:67927329-67927348 | Msa1119070:CDS | 45.0% | |
| ACAGTGAGTGAGTGAGTGAC+TGG | + | chr7_3:67926077-67926096 | Msa1119070:five_prime_UTR | 50.0% | |
| CCGCAGAGAGATATGACGAT+TGG | - | chr7_3:67926110-67926129 | None:intergenic | 50.0% | |
| ! | GTGTGAGGGTGTGCATGTAA+TGG | - | chr7_3:67926159-67926178 | None:intergenic | 50.0% |
| ! | CCAATGTTAGACTCGGTACG+TGG | - | chr7_3:67926800-67926819 | None:intergenic | 50.0% |
| CCACGTACCGAGTCTAACAT+TGG | + | chr7_3:67926797-67926816 | Msa1119070:intron | 50.0% | |
| AGGACCAGCTCAAAACCTTC+TGG | + | chr7_3:67927229-67927248 | Msa1119070:CDS | 50.0% | |
| !! | TTTGGGCCACTGATTCCAGA+AGG | - | chr7_3:67927247-67927266 | None:intergenic | 50.0% |
| GAAGATCGGAAAGCCTCATG+TGG | + | chr7_3:67927319-67927338 | Msa1119070:CDS | 50.0% | |
| TCATGTGGCTATTCAGGGTC+CGG | + | chr7_3:67927334-67927353 | Msa1119070:CDS | 50.0% | |
| CAGGGTCCGGTTGATTACTT+AGG | + | chr7_3:67927347-67927366 | Msa1119070:CDS | 50.0% | |
| ACAGTGAGTGAGTGAGTGAC+TGG | + | chr7_3:67926077-67926096 | Msa1119070:five_prime_UTR | 50.0% | |
| CCGCAGAGAGATATGACGAT+TGG | - | chr7_3:67926110-67926129 | None:intergenic | 50.0% | |
| ! | GTGTGAGGGTGTGCATGTAA+TGG | - | chr7_3:67926159-67926178 | None:intergenic | 50.0% |
| ! | CCAATGTTAGACTCGGTACG+TGG | - | chr7_3:67926800-67926819 | None:intergenic | 50.0% |
| CCACGTACCGAGTCTAACAT+TGG | + | chr7_3:67926797-67926816 | Msa1119070:intron | 50.0% | |
| AGGACCAGCTCAAAACCTTC+TGG | + | chr7_3:67927229-67927248 | Msa1119070:CDS | 50.0% | |
| !! | TTTGGGCCACTGATTCCAGA+AGG | - | chr7_3:67927247-67927266 | None:intergenic | 50.0% |
| GAAGATCGGAAAGCCTCATG+TGG | + | chr7_3:67927319-67927338 | Msa1119070:CDS | 50.0% | |
| TCATGTGGCTATTCAGGGTC+CGG | + | chr7_3:67927334-67927353 | Msa1119070:CDS | 50.0% | |
| CAGGGTCCGGTTGATTACTT+AGG | + | chr7_3:67927347-67927366 | Msa1119070:CDS | 50.0% | |
| GGACCCTGAATAGCCACATG+AGG | - | chr7_3:67927335-67927354 | None:intergenic | 55.0% | |
| GGACCCTGAATAGCCACATG+AGG | - | chr7_3:67927335-67927354 | None:intergenic | 55.0% | |
| TGGCAAACAATGAGGGGGGG+AGG | - | chr7_3:67926139-67926158 | None:intergenic | 60.0% | |
| TGGCAAACAATGAGGGGGGG+AGG | - | chr7_3:67926139-67926158 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_3 | gene | 67926009 | 67927599 | 67926009 | ID=Msa1119070;Name=Msa1119070 |
| chr7_3 | mRNA | 67926009 | 67927599 | 67926009 | ID=Msa1119070-mRNA-1;Parent=Msa1119070;Name=Msa1119070-mRNA-1;_AED=0.26;_eAED=0.26;_QI=130|1|1|1|0.5|0.33|3|190|130 |
| chr7_3 | exon | 67926009 | 67926128 | 67926009 | ID=Msa1119070-mRNA-1:exon:16852;Parent=Msa1119070-mRNA-1 |
| chr7_3 | exon | 67926246 | 67926446 | 67926246 | ID=Msa1119070-mRNA-1:exon:16853;Parent=Msa1119070-mRNA-1 |
| chr7_3 | exon | 67927208 | 67927599 | 67927208 | ID=Msa1119070-mRNA-1:exon:16854;Parent=Msa1119070-mRNA-1 |
| chr7_3 | five_prime_UTR | 67926009 | 67926128 | 67926009 | ID=Msa1119070-mRNA-1:five_prime_utr;Parent=Msa1119070-mRNA-1 |
| chr7_3 | five_prime_UTR | 67926246 | 67926255 | 67926246 | ID=Msa1119070-mRNA-1:five_prime_utr;Parent=Msa1119070-mRNA-1 |
| chr7_3 | CDS | 67926256 | 67926446 | 67926256 | ID=Msa1119070-mRNA-1:cds;Parent=Msa1119070-mRNA-1 |
| chr7_3 | CDS | 67927208 | 67927409 | 67927208 | ID=Msa1119070-mRNA-1:cds;Parent=Msa1119070-mRNA-1 |
| chr7_3 | three_prime_UTR | 67927410 | 67927599 | 67927410 | ID=Msa1119070-mRNA-1:three_prime_utr;Parent=Msa1119070-mRNA-1 |
| Gene Sequence |
| Protein sequence |
