AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1383980

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1383980 MtrunA17_Chr4g0074021 100.000 159 0 0 1 159 1 159 5.08e-117 327
Msa1383980 MtrunA17_Chr4g0061171 93.711 159 10 0 1 159 1 159 2.71e-109 308
Msa1383980 MtrunA17_Chr3g0091481 92.453 159 12 0 1 159 1 159 1.42e-108 306
Msa1383980 MtrunA17_Chr5g0418211 89.937 159 16 0 1 159 1 159 1.75e-106 300
Msa1383980 MtrunA17_Chr4g0062241 68.627 102 22 1 1 102 1 92 3.17e-45 143
Msa1383980 MtrunA17_Chr4g0074011 47.656 128 19 2 18 145 42 121 1.06e-26 98.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1383980 AT1G13950.1 91.824 159 12 1 1 159 1 158 4.28e-105 297
Msa1383980 AT1G69410.1 86.792 159 20 1 1 159 1 158 9.26e-102 289
Msa1383980 AT1G26630.1 81.529 157 28 1 1 157 1 156 1.42e-93 268
Msa1383980 AT1G26630.2 84.252 127 19 1 1 127 1 126 6.93e-76 223

Find 64 sgRNAs with CRISPR-Local

Find 164 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATATCCAATAAGTTATTT+TGG 0.141811 tig0020633:+29112 Msa1383980:three_prime_UTR
TTCATCCCAAAATAACTTAT+TGG 0.178416 tig0020633:-29118 None:intergenic
GATCAATGCGGTTAACTTAT+AGG 0.258167 tig0020633:+28899 Msa1383980:three_prime_UTR
ATTATTGAACTCTCTGGTTT+TGG 0.270929 tig0020633:+28651 Msa1383980:three_prime_UTR
ATCAATGCGGTTAACTTATA+GGG 0.274474 tig0020633:+28900 Msa1383980:three_prime_UTR
CGGTCGATTAGTTGTGTCTA+AGG 0.307333 tig0020633:+29007 Msa1383980:three_prime_UTR
AAAGAGCACAGAGGAGAGAT+AGG 0.326363 tig0020633:-28735 None:intergenic
AGCCTGTTGAGGGTAGGTTT+TGG 0.330390 tig0020633:-26333 None:intergenic
AGGAAGCTTCAGATCATCTT+TGG 0.330486 tig0020633:-28309 None:intergenic
ACTTAGGACCAATGTCCTTC+AGG 0.343359 tig0020633:-28518 None:intergenic
TTGATTGATATTTCTGAAGA+TGG 0.371340 tig0020633:+27436 Msa1383980:CDS
CTTATAGGGGATGCGGATCT+AGG 0.397089 tig0020633:+28914 Msa1383980:three_prime_UTR
TCTTTAATTATTGAACTCTC+TGG 0.403510 tig0020633:+28645 Msa1383980:three_prime_UTR
CTGAGTAGTTGTGTATATAT+TGG 0.412034 tig0020633:+28983 Msa1383980:three_prime_UTR
TGAGGATCGGATGAATGATT+AGG 0.418550 tig0020633:+26145 None:intergenic
GCAGAAAACCTTGCAAGGCC+TGG 0.423629 tig0020633:-26393 None:intergenic
TTAAAGAGACAAGATAAATA+TGG 0.437632 tig0020633:-28629 None:intergenic
ATCCAAAACCTACCCTCAAC+AGG 0.440341 tig0020633:+26331 Msa1383980:CDS
ATACATTCATAGATTAAAGA+TGG 0.442913 tig0020633:+28429 Msa1383980:intron
TAAAACATGGTGTGGAGAAA+AGG 0.446845 tig0020633:+28605 Msa1383980:three_prime_UTR
GGATGCTCCGGCATCGGCAG+CGG 0.446886 tig0020633:-26312 None:intergenic
GATGCTCCGGCATCGGCAGC+GGG 0.447940 tig0020633:-26311 None:intergenic
TTTGAACCCGCTGCCGATGC+CGG 0.456716 tig0020633:+26305 Msa1383980:CDS
TTAGTTGTGTCTAAGGGTTA+AGG 0.475769 tig0020633:+29014 Msa1383980:three_prime_UTR
CTTAGGACCAATGTCCTTCA+GGG 0.484561 tig0020633:-28517 None:intergenic
ATTAAAGATGGATTTGCTGA+TGG 0.488295 tig0020633:+28441 Msa1383980:CDS
GGACACTTAAAGAATTCATC+TGG 0.489024 tig0020633:-28674 None:intergenic
GAATAGTACCAGCCTGTTGA+GGG 0.502881 tig0020633:-26343 None:intergenic
GGTTTCTGTTATGTCTGCGA+TGG 0.503255 tig0020633:+28476 Msa1383980:CDS
ACATCACAATTGTGGGATGA+AGG 0.511953 tig0020633:-27306 None:intergenic
CTAACTTACATCACAATTGT+GGG 0.513530 tig0020633:-27313 None:intergenic
TCTAACTTACATCACAATTG+TGG 0.519354 tig0020633:-27314 None:intergenic
CATCAAGTCCAGGCCTTGCA+AGG 0.525229 tig0020633:+26385 Msa1383980:CDS
GCTGGTACTATTCGCAAGAA+TGG 0.527051 tig0020633:+26353 Msa1383980:CDS
CGAATAGTACCAGCCTGTTG+AGG 0.540601 tig0020633:-26344 None:intergenic
TTGATTGCAAGTTATAAAGC+TGG 0.545199 tig0020633:-28855 None:intergenic
CGGTTAACTTATAGGGGATG+CGG 0.553112 tig0020633:+28907 Msa1383980:three_prime_UTR
GTTTCTGTTATGTCTGCGAT+GGG 0.555762 tig0020633:+28477 Msa1383980:CDS
GTGTGTGATGTAGTGTGCAC+TGG 0.568452 tig0020633:+28795 Msa1383980:three_prime_UTR
TTGCAAGTTATAAAGCTGGT+TGG 0.569207 tig0020633:-28851 None:intergenic
AAGAGCACAGAGGAGAGATA+GGG 0.569296 tig0020633:-28734 None:intergenic
GGTCGATTAGTTGTGTCTAA+GGG 0.576561 tig0020633:+29008 Msa1383980:three_prime_UTR
AAAACCTACCCTCAACAGGC+TGG 0.584266 tig0020633:+26335 Msa1383980:CDS
GATGCTTTCTCTGCGCGCGT+GGG 0.584738 tig0020633:-26253 None:intergenic
GAAACTCATAAAACATGGTG+TGG 0.589277 tig0020633:+28597 Msa1383980:three_prime_UTR
AGAGCAGATATGTGCCCTGA+AGG 0.589389 tig0020633:+28503 Msa1383980:CDS
TGCTGATGGAAAAGATCTCG+TGG 0.593109 tig0020633:+28455 Msa1383980:CDS
GAAAAGCAGAAAACCTTGCA+AGG 0.593565 tig0020633:-26398 None:intergenic
ATATGTGCCCTGAAGGACAT+TGG 0.593679 tig0020633:+28510 Msa1383980:CDS
GTTACATAGTCATCAAGTCC+AGG 0.598114 tig0020633:+26375 Msa1383980:CDS
TGATGCTTTCTCTGCGCGCG+TGG 0.598798 tig0020633:-26254 None:intergenic
TGATGATTCACTACTTACTC+AGG 0.602143 tig0020633:+28334 Msa1383980:CDS
TCAATGCGGTTAACTTATAG+GGG 0.604359 tig0020633:+28901 Msa1383980:three_prime_UTR
GTAAGTAGTGAATCATCAGT+AGG 0.605999 tig0020633:-28329 None:intergenic
AGTACCAGCCTGTTGAGGGT+AGG 0.611010 tig0020633:-26339 None:intergenic
GTGAGTTTGTTGACTGACAA+TGG 0.614472 tig0020633:+28281 Msa1383980:CDS
TATGTGTGAGGAGAAGAAGA+TGG 0.621382 tig0020633:-26222 None:intergenic
GTAGTTGTGTATATATTGGA+CGG 0.637381 tig0020633:+28987 Msa1383980:three_prime_UTR
GCTCAATAAACTTGTCAATG+TGG 0.641522 tig0020633:+28564 Msa1383980:three_prime_UTR
AGCTTGAAACTCATAAAACA+TGG 0.668434 tig0020633:+28592 Msa1383980:three_prime_UTR
TTTATAACTTGCAATCAACA+CGG 0.675149 tig0020633:+28860 Msa1383980:three_prime_UTR
TGGGTAATGTGTTATGTGTG+AGG 0.693706 tig0020633:-26234 None:intergenic
TAATCAGTACGATTCACATG+AGG 0.718954 tig0020633:-27409 None:intergenic
ATTAGTTGAAAAGAGCACAG+AGG 0.742860 tig0020633:-28744 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTGATTTGATTGTTTTAAA+CGG + tig0020633:26633-26652 Msa1383980:intron 15.0%
!!! TTTGAAACAATTTTTAAAGA+TGG + tig0020633:26965-26984 Msa1383980:intron 15.0%
!!! TTTTATAAACTTGATATAAC+TGG + tig0020633:27027-27046 Msa1383980:intron 15.0%
!! AATATATTGAGAAACAAATA+CGG - tig0020633:27177-27196 None:intergenic 15.0%
!!! ATTTGTTTCTCAATATATTT+TGG + tig0020633:27178-27197 Msa1383980:intron 15.0%
!! ATTAAGTTAAAACTTTCAAA+TGG + tig0020633:27506-27525 Msa1383980:intron 15.0%
!! ACAAAAATATAAAGTTACAA+GGG - tig0020633:28698-28717 None:intergenic 15.0%
!! AACAAAAATATAAAGTTACA+AGG - tig0020633:28699-28718 None:intergenic 15.0%
!!! ATATATCCAATAAGTTATTT+TGG + tig0020633:29112-29131 Msa1383980:three_prime_UTR 15.0%
!!! TTTAGAATAAAAAGAGAGTT+AGG + tig0020633:26168-26187 Msa1383980:five_prime_UTR 20.0%
!! TTAGAATAAAAAGAGAGTTA+GGG + tig0020633:26169-26188 Msa1383980:five_prime_UTR 20.0%
!! AAAAAATACAAATCTAGAAG+GGG - tig0020633:26429-26448 None:intergenic 20.0%
!! CAAAAAATACAAATCTAGAA+GGG - tig0020633:26430-26449 None:intergenic 20.0%
!! TCAAAAAATACAAATCTAGA+AGG - tig0020633:26431-26450 None:intergenic 20.0%
!! TGTTTGAATCGAATAAAAAT+TGG + tig0020633:26589-26608 Msa1383980:intron 20.0%
!! ATAAAAATTGGAACATGATT+TGG + tig0020633:26601-26620 Msa1383980:intron 20.0%
!! AAAAATTGTTTCAAAACCTA+GGG - tig0020633:26960-26979 None:intergenic 20.0%
!! TAAAAATTGTTTCAAAACCT+AGG - tig0020633:26961-26980 None:intergenic 20.0%
!!! TTGCTATTGATATTTTCAAT+GGG + tig0020633:27262-27281 Msa1383980:CDS 20.0%
!! GGATATATAAAATGAGAATT+AGG + tig0020633:27527-27546 Msa1383980:intron 20.0%
!! TGTTATCTTAATGTCTATTA+AGG + tig0020633:27577-27596 Msa1383980:intron 20.0%
!! GTTATCTTAATGTCTATTAA+GGG + tig0020633:27578-27597 Msa1383980:intron 20.0%
!!! ATAAAACATACTCAGTTTTT+AGG - tig0020633:27622-27641 None:intergenic 20.0%
!! AAATATTATAGTCATTCCTT+TGG - tig0020633:27729-27748 None:intergenic 20.0%
!!! TTTACATTATGTTTTATGTC+AGG + tig0020633:27760-27779 Msa1383980:intron 20.0%
!! TTTAGTGTAATTATAAGTGT+CGG + tig0020633:27957-27976 Msa1383980:intron 20.0%
!! AAGTAAAAATAAGATGACAT+AGG + tig0020633:28062-28081 Msa1383980:intron 20.0%
!! AGTAAAAATAAGATGACATA+GGG + tig0020633:28063-28082 Msa1383980:intron 20.0%
!! AAAGAGACAAAATATATATG+TGG - tig0020633:28394-28413 None:intergenic 20.0%
!!! GTCTCTTTAATTTGATTTAT+TGG + tig0020633:28406-28425 Msa1383980:intron 20.0%
!! ATACATTCATAGATTAAAGA+TGG + tig0020633:28429-28448 Msa1383980:intron 20.0%
!! TTAAAGAGACAAGATAAATA+TGG - tig0020633:28632-28651 None:intergenic 20.0%
!! TGATGGAGAAAAATAAATTT+AGG + tig0020633:28767-28786 Msa1383980:three_prime_UTR 20.0%
! AATTCCTTATTCGATTAATC+TGG + tig0020633:26450-26469 Msa1383980:intron 25.0%
! TTAACATGCTTCTGTTTATA+TGG + tig0020633:26536-26555 Msa1383980:intron 25.0%
!!! TGTTTATATGGTGTTGATTT+TGG + tig0020633:26548-26567 Msa1383980:intron 25.0%
! TTTACATCTAGATCTAACAT+TGG + tig0020633:26678-26697 Msa1383980:intron 25.0%
!! AAGTTAATCTCTTTTCAACA+TGG - tig0020633:26737-26756 None:intergenic 25.0%
!!! AATTGTGCTAACTTGTTTAT+TGG + tig0020633:27148-27167 Msa1383980:intron 25.0%
!!! ATTGTGCTAACTTGTTTATT+GGG + tig0020633:27149-27168 Msa1383980:intron 25.0%
!!! GTTTCTCAATATATTTTGGT+AGG + tig0020633:27182-27201 Msa1383980:intron 25.0%
!!! GTTGCTATTGATATTTTCAA+TGG + tig0020633:27261-27280 Msa1383980:CDS 25.0%
!! TTGATTGATATTTCTGAAGA+TGG + tig0020633:27436-27455 Msa1383980:CDS 25.0%
! GTTATATAGATGAGTTACAT+GGG + tig0020633:27549-27568 Msa1383980:intron 25.0%
! TTATATAGATGAGTTACATG+GGG + tig0020633:27550-27569 Msa1383980:intron 25.0%
!! TTCACAGTAAATTTTACCAA+AGG + tig0020633:27710-27729 Msa1383980:intron 25.0%
! TTCTTCATGTTAGGAAAATA+TGG - tig0020633:27815-27834 None:intergenic 25.0%
!! TATTTGACTTTCTTCATGTT+AGG - tig0020633:27824-27843 None:intergenic 25.0%
!! ACTTGTTTGTATTCACATTT+TGG - tig0020633:28178-28197 None:intergenic 25.0%
! CATACGAAAAATTACTACTT+AGG - tig0020633:28537-28556 None:intergenic 25.0%
! TCTTTAATTATTGAACTCTC+TGG + tig0020633:28645-28664 Msa1383980:three_prime_UTR 25.0%
!! TTTATAACTTGCAATCAACA+CGG + tig0020633:28860-28879 Msa1383980:three_prime_UTR 25.0%
!!! AGTTAAGAGATTTTTTGGTG+CGG - tig0020633:26199-26218 None:intergenic 30.0%
!!! GGATGAGTTAAGAGATTTTT+TGG - tig0020633:26204-26223 None:intergenic 30.0%
GATTCCAGATTAATCGAATA+AGG - tig0020633:26457-26476 None:intergenic 30.0%
!!! ATTTTGGTTGATTGGTAACT+GGG + tig0020633:26564-26583 Msa1383980:intron 30.0%
TCAAATAAGTCAATCCAAAC+AGG + tig0020633:26934-26953 Msa1383980:intron 30.0%
!!! CATTGGAATTTTAGTTTTGC+TGG + tig0020633:27093-27112 Msa1383980:intron 30.0%
!!! TATATTTTGGTAGGTTGTTG+AGG + tig0020633:27191-27210 Msa1383980:intron 30.0%
ACTTCAAAAACAGGAAAACA+TGG + tig0020633:27219-27238 Msa1383980:CDS 30.0%
CTAACTTACATCACAATTGT+GGG - tig0020633:27316-27335 None:intergenic 30.0%
TCTAACTTACATCACAATTG+TGG - tig0020633:27317-27336 None:intergenic 30.0%
TTACTTGTGACAACTTTAGT+AGG + tig0020633:27477-27496 Msa1383980:intron 30.0%
GGTTATATAGATGAGTTACA+TGG + tig0020633:27548-27567 Msa1383980:intron 30.0%
TATATAGATGAGTTACATGG+GGG + tig0020633:27551-27570 Msa1383980:intron 30.0%
TTAATGTCTATTAAGGGATG+AGG + tig0020633:27584-27603 Msa1383980:intron 30.0%
TAATGTCTATTAAGGGATGA+GGG + tig0020633:27585-27604 Msa1383980:intron 30.0%
TTCTTCATGTTAGGAAAACA+AGG - tig0020633:27680-27699 None:intergenic 30.0%
TAGTTGACATTCTTCATGTT+AGG - tig0020633:27689-27708 None:intergenic 30.0%
CCTAAACAAAACATTCATGT+AGG - tig0020633:28262-28281 None:intergenic 30.0%
!!! CCTACATGAATGTTTTGTTT+AGG + tig0020633:28259-28278 Msa1383980:intron 30.0%
!! ATTAAAGATGGATTTGCTGA+TGG + tig0020633:28441-28460 Msa1383980:CDS 30.0%
AGCTTGAAACTCATAAAACA+TGG + tig0020633:28592-28611 Msa1383980:three_prime_UTR 30.0%
!! ATTATTGAACTCTCTGGTTT+TGG + tig0020633:28651-28670 Msa1383980:three_prime_UTR 30.0%
! TGCTCTTTTCAACTAATTGA+TGG + tig0020633:28750-28769 Msa1383980:three_prime_UTR 30.0%
TTGATTGCAAGTTATAAAGC+TGG - tig0020633:28858-28877 None:intergenic 30.0%
!!! ACACGGTTAACTTTTTTCAA+AGG + tig0020633:28877-28896 Msa1383980:three_prime_UTR 30.0%
!!! CTTTTTTCAAAGGATCAATG+CGG + tig0020633:28887-28906 Msa1383980:three_prime_UTR 30.0%
ATCAATGCGGTTAACTTATA+GGG + tig0020633:28900-28919 Msa1383980:three_prime_UTR 30.0%
CTGAGTAGTTGTGTATATAT+TGG + tig0020633:28983-29002 Msa1383980:three_prime_UTR 30.0%
GTAGTTGTGTATATATTGGA+CGG + tig0020633:28987-29006 Msa1383980:three_prime_UTR 30.0%
TACAAATCTAGAAGGGGAAA+GGG - tig0020633:26423-26442 None:intergenic 35.0%
ATACAAATCTAGAAGGGGAA+AGG - tig0020633:26424-26443 None:intergenic 35.0%
!!! TGGTGTTGATTTTGGTTGAT+TGG + tig0020633:26556-26575 Msa1383980:intron 35.0%
!!! GATTTTGGTTGATTGGTAAC+TGG + tig0020633:26563-26582 Msa1383980:intron 35.0%
TAAACGGAGACATAGACATA+TGG + tig0020633:26649-26668 Msa1383980:intron 35.0%
GAGGTTTCTACTTCAAAAAC+AGG + tig0020633:27210-27229 Msa1383980:CDS 35.0%
TAATCAGTACGATTCACATG+AGG - tig0020633:27412-27431 None:intergenic 35.0%
TTGTGACAACTTTAGTAGGT+GGG + tig0020633:27481-27500 Msa1383980:intron 35.0%
!!! CATACTCAGTTTTTAGGACA+TGG - tig0020633:27616-27635 None:intergenic 35.0%
GAGTTTACAACTATGAAGCA+TGG - tig0020633:28007-28026 None:intergenic 35.0%
ACAAGTGCACAACAAGAAAA+AGG + tig0020633:28192-28211 Msa1383980:intron 35.0%
CAAGTGCACAACAAGAAAAA+GGG + tig0020633:28193-28212 Msa1383980:intron 35.0%
TTATGCTATTGTCATTGCAG+TGG + tig0020633:28224-28243 Msa1383980:intron 35.0%
GTAAGTAGTGAATCATCAGT+AGG - tig0020633:28332-28351 None:intergenic 35.0%
TGATGATTCACTACTTACTC+AGG + tig0020633:28334-28353 Msa1383980:CDS 35.0%
TTCACTACTTACTCAGGTAT+TGG + tig0020633:28340-28359 Msa1383980:intron 35.0%
TCACTACTTACTCAGGTATT+GGG + tig0020633:28341-28360 Msa1383980:intron 35.0%
GCTCAATAAACTTGTCAATG+TGG + tig0020633:28564-28583 Msa1383980:three_prime_UTR 35.0%
GAAACTCATAAAACATGGTG+TGG + tig0020633:28597-28616 Msa1383980:three_prime_UTR 35.0%
TAAAACATGGTGTGGAGAAA+AGG + tig0020633:28605-28624 Msa1383980:three_prime_UTR 35.0%
GGACACTTAAAGAATTCATC+TGG - tig0020633:28677-28696 None:intergenic 35.0%
! ATTAGTTGAAAAGAGCACAG+AGG - tig0020633:28747-28766 None:intergenic 35.0%
TTGCAAGTTATAAAGCTGGT+TGG - tig0020633:28854-28873 None:intergenic 35.0%
GATCAATGCGGTTAACTTAT+AGG + tig0020633:28899-28918 Msa1383980:three_prime_UTR 35.0%
TCAATGCGGTTAACTTATAG+GGG + tig0020633:28901-28920 Msa1383980:three_prime_UTR 35.0%
TTAGTTGTGTCTAAGGGTTA+AGG + tig0020633:29014-29033 Msa1383980:three_prime_UTR 35.0%
!!! TAAGAGATTTTTTGGTGCGG+TGG - tig0020633:26196-26215 None:intergenic 40.0%
TATGTGTGAGGAGAAGAAGA+TGG - tig0020633:26225-26244 None:intergenic 40.0%
TGGGTAATGTGTTATGTGTG+AGG - tig0020633:26237-26256 None:intergenic 40.0%
GTTACATAGTCATCAAGTCC+AGG + tig0020633:26375-26394 Msa1383980:CDS 40.0%
GAAAAGCAGAAAACCTTGCA+AGG - tig0020633:26401-26420 None:intergenic 40.0%
TCCCTATAATCCTTGACAAC+AGG + tig0020633:27068-27087 Msa1383980:intron 40.0%
CCCTGTTGTCAAGGATTATA+GGG - tig0020633:27072-27091 None:intergenic 40.0%
CCCTATAATCCTTGACAACA+GGG + tig0020633:27069-27088 Msa1383980:intron 40.0%
TCCCTGTTGTCAAGGATTAT+AGG - tig0020633:27073-27092 None:intergenic 40.0%
ACATCACAATTGTGGGATGA+AGG - tig0020633:27309-27328 None:intergenic 40.0%
ATCATCTTTGCTCTCTTTGC+AGG + tig0020633:27384-27403 Msa1383980:intron 40.0%
CTTGTGACAACTTTAGTAGG+TGG + tig0020633:27480-27499 Msa1383980:intron 40.0%
TGCTGTAAACCTATGAAGCA+CGG + tig0020633:27878-27897 Msa1383980:intron 40.0%
!! TATAAGTGTCGGTGTTGTGT+CGG + tig0020633:27968-27987 Msa1383980:intron 40.0%
!! GTGAGTTTGTTGACTGACAA+TGG + tig0020633:28281-28300 Msa1383980:CDS 40.0%
AGGAAGCTTCAGATCATCTT+TGG - tig0020633:28312-28331 None:intergenic 40.0%
GTTTCTGTTATGTCTGCGAT+GGG + tig0020633:28477-28496 Msa1383980:CDS 40.0%
! GGTCGATTAGTTGTGTCTAA+GGG + tig0020633:29008-29027 Msa1383980:three_prime_UTR 40.0%
ATCCAAAACCTACCCTCAAC+AGG + tig0020633:26331-26350 Msa1383980:CDS 45.0%
GAATAGTACCAGCCTGTTGA+GGG - tig0020633:26346-26365 None:intergenic 45.0%
GCTGGTACTATTCGCAAGAA+TGG + tig0020633:26353-26372 Msa1383980:CDS 45.0%
TTCAAAACCTAGGGCCTGTT+TGG - tig0020633:26951-26970 None:intergenic 45.0%
CGACATCGTTAGGATGAGTT+AGG + tig0020633:26997-27016 Msa1383980:intron 45.0%
ATCCTTGACAACAGGGACAT+TGG + tig0020633:27076-27095 Msa1383980:intron 45.0%
TTCCAATGTCCCTGTTGTCA+AGG - tig0020633:27081-27100 None:intergenic 45.0%
TGTCTGTATCCGTGCTTCAT+AGG - tig0020633:27890-27909 None:intergenic 45.0%
TGCTGATGGAAAAGATCTCG+TGG + tig0020633:28455-28474 Msa1383980:CDS 45.0%
GGTTTCTGTTATGTCTGCGA+TGG + tig0020633:28476-28495 Msa1383980:CDS 45.0%
ATATGTGCCCTGAAGGACAT+TGG + tig0020633:28510-28529 Msa1383980:CDS 45.0%
CTTAGGACCAATGTCCTTCA+GGG - tig0020633:28520-28539 None:intergenic 45.0%
ACTTAGGACCAATGTCCTTC+AGG - tig0020633:28521-28540 None:intergenic 45.0%
! AAGAGCACAGAGGAGAGATA+GGG - tig0020633:28737-28756 None:intergenic 45.0%
! AAAGAGCACAGAGGAGAGAT+AGG - tig0020633:28738-28757 None:intergenic 45.0%
CGGTTAACTTATAGGGGATG+CGG + tig0020633:28907-28926 Msa1383980:three_prime_UTR 45.0%
! CGGTCGATTAGTTGTGTCTA+AGG + tig0020633:29007-29026 Msa1383980:three_prime_UTR 45.0%
!!! AGGGTAGGTTTTGGATGCTC+CGG - tig0020633:26327-26346 None:intergenic 50.0%
! AGCCTGTTGAGGGTAGGTTT+TGG - tig0020633:26336-26355 None:intergenic 50.0%
AAAACCTACCCTCAACAGGC+TGG + tig0020633:26335-26354 Msa1383980:CDS 50.0%
CGAATAGTACCAGCCTGTTG+AGG - tig0020633:26347-26366 None:intergenic 50.0%
AGTCAATCCAAACAGGCCCT+AGG + tig0020633:26941-26960 Msa1383980:intron 50.0%
GACACGTAGTCGACATCGTT+AGG + tig0020633:26987-27006 Msa1383980:intron 50.0%
TGAAGCACGGATACAGACAC+CGG + tig0020633:27891-27910 Msa1383980:intron 50.0%
AGAGCAGATATGTGCCCTGA+AGG + tig0020633:28503-28522 Msa1383980:CDS 50.0%
GTGTGTGATGTAGTGTGCAC+TGG + tig0020633:28795-28814 Msa1383980:three_prime_UTR 50.0%
CTTATAGGGGATGCGGATCT+AGG + tig0020633:28914-28933 Msa1383980:three_prime_UTR 50.0%
!!! GGTTTTGGATGCTCCGGCAT+CGG - tig0020633:26321-26340 None:intergenic 55.0%
AGTACCAGCCTGTTGAGGGT+AGG - tig0020633:26342-26361 None:intergenic 55.0%
CATCAAGTCCAGGCCTTGCA+AGG + tig0020633:26385-26404 Msa1383980:CDS 55.0%
GCAGAAAACCTTGCAAGGCC+TGG - tig0020633:26396-26415 None:intergenic 55.0%
ACGGATACAGACACCGGACA+CGG + tig0020633:27897-27916 Msa1383980:intron 55.0%
GTTATGCCAGTGTCCGTGTC+CGG - tig0020633:27913-27932 None:intergenic 55.0%
GATGCTTTCTCTGCGCGCGT+GGG - tig0020633:26256-26275 None:intergenic 60.0%
TGATGCTTTCTCTGCGCGCG+TGG - tig0020633:26257-26276 None:intergenic 60.0%
TTTGAACCCGCTGCCGATGC+CGG + tig0020633:26305-26324 Msa1383980:CDS 60.0%
CAGACACCGGACACGGACAC+TGG + tig0020633:27904-27923 Msa1383980:intron 65.0%
!! GATGCTCCGGCATCGGCAGC+GGG - tig0020633:26314-26333 None:intergenic 70.0%
!! GGATGCTCCGGCATCGGCAG+CGG - tig0020633:26315-26334 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
tig0020633 gene 26157 29135 26157 ID=Msa1383980;Name=Msa1383980
tig0020633 mRNA 26157 29135 26157 ID=Msa1383980-mRNA-1;Parent=Msa1383980;Name=Msa1383980-mRNA-1;_AED=0.02;_eAED=0.02;_QI=127|1|1|1|1|1|5|593|159
tig0020633 exon 26157 26406 26157 ID=Msa1383980-mRNA-1:exon:8857;Parent=Msa1383980-mRNA-1
tig0020633 exon 27204 27326 27204 ID=Msa1383980-mRNA-1:exon:8858;Parent=Msa1383980-mRNA-1
tig0020633 exon 27406 27462 27406 ID=Msa1383980-mRNA-1:exon:8859;Parent=Msa1383980-mRNA-1
tig0020633 exon 28281 28355 28281 ID=Msa1383980-mRNA-1:exon:8860;Parent=Msa1383980-mRNA-1
tig0020633 exon 28441 29135 28441 ID=Msa1383980-mRNA-1:exon:8861;Parent=Msa1383980-mRNA-1
tig0020633 five_prime_UTR 26157 26283 26157 ID=Msa1383980-mRNA-1:five_prime_utr;Parent=Msa1383980-mRNA-1
tig0020633 CDS 26284 26406 26284 ID=Msa1383980-mRNA-1:cds;Parent=Msa1383980-mRNA-1
tig0020633 CDS 27204 27326 27204 ID=Msa1383980-mRNA-1:cds;Parent=Msa1383980-mRNA-1
tig0020633 CDS 27406 27462 27406 ID=Msa1383980-mRNA-1:cds;Parent=Msa1383980-mRNA-1
tig0020633 CDS 28281 28355 28281 ID=Msa1383980-mRNA-1:cds;Parent=Msa1383980-mRNA-1
tig0020633 CDS 28441 28542 28441 ID=Msa1383980-mRNA-1:cds;Parent=Msa1383980-mRNA-1
tig0020633 three_prime_UTR 28543 29135 28543 ID=Msa1383980-mRNA-1:three_prime_utr;Parent=Msa1383980-mRNA-1
Gene Sequence

>Msa1383980

ATGTCTGACGAAGAACATCACTTTGAACCCGCTGCCGATGCCGGAGCATCCAAAACCTACCCTCAACAGGCTGGTACTATTCGCAAGAATGGTTACATAGTCATCAAGTCCAGGCCTTGCAAGGTTGTTGAGGTTTCTACTTCAAAAACAGGAAAACATGGACATGCAAAGTGTCACTTTGTTGCTATTGATATTTTCAATGGGAAAAAACTTGAAGATATTGTTCCTTCATCCCACAATTGTGATGTTCCTCATGTGAATCGTACTGATTATCAGTTGATTGATATTTCTGAAGATGGATTTGTGAGTTTGTTGACTGACAATGGAAGTACCAAAGATGATCTGAAGCTTCCTACTGATGATTCACTACTTACTCAGATTAAAGATGGATTTGCTGATGGAAAAGATCTCGTGGTTTCTGTTATGTCTGCGATGGGTGAAGAGCAGATATGTGCCCTGAAGGACATTGGTCCTAAGTAG
Protein sequence

>Msa1383980

MSDEEHHFEPAADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGSTKDDLKLPTDDSLLTQIKDGFADGKDLVVSVMSAMGEEQICALKDIGPK*