AlfalfaGEDB | Msa1384370

M. sativa cultivar zhongmu-4 / Msa1384370

KEGG: K02183
GO: GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046872
PFAM: PF13499.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1384370	RHN61981.1	88.514	148	17	0	5	152	33	180	4.46e-85	257

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1384370	sp\|Q93Z27\|CML46_ARATH	41.593	113	63	2	42	151	91	203	1.13e-21	89.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1384370	A0A396IB26	88.514	148	17	0	5	152	33	180	2.13e-85	257

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0148720	Msa1384370	0.801492	8.776450e-49	-8.615850e-47
Msa0173990	Msa1384370	0.800228	1.590531e-48	-8.615850e-47
Msa0317510	Msa1384370	0.808820	2.566918e-50	-8.615850e-47
Msa0353690	Msa1384370	0.809491	1.843129e-50	-8.615850e-47
Msa0527680	Msa1384370	0.987069	6.012173e-169	-8.615850e-47
Msa0641360	Msa1384370	0.801462	8.901788e-49	-8.615850e-47
Msa0902020	Msa1384370	0.819625	1.052653e-52	-8.615850e-47
Msa0909120	Msa1384370	0.801155	1.028689e-48	-8.615850e-47
Msa1082500	Msa1384370	0.807261	5.509720e-50	-8.615850e-47
Msa1084240	Msa1384370	0.803282	3.755699e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1384370	MtrunA17_Chr4g0042491	88.514	148	17	0	5	152	33	180	4.10e-89	257
Msa1384370	MtrunA17_Chr5g0408251	43.333	150	77	4	6	148	48	196	3.50e-24	92.8
Msa1384370	MtrunA17_Chr7g0217621	45.968	124	63	3	28	148	76	198	7.07e-23	89.7
Msa1384370	MtrunA17_Chr4g0071941	47.009	117	59	2	38	151	33	149	2.57e-22	86.7
Msa1384370	MtrunA17_Chr4g0033601	35.200	125	62	4	41	148	20	142	5.43e-15	67.8
Msa1384370	MtrunA17_Chr7g0245911	51.515	66	31	1	85	149	127	192	7.26e-14	65.9
Msa1384370	MtrunA17_Chr1g0161211	50.000	70	34	1	84	152	117	186	1.92e-13	64.7
Msa1384370	MtrunA17_Chr2g0329371	52.459	61	27	1	90	148	143	203	2.50e-13	64.7
Msa1384370	MtrunA17_Chr4g0044961	32.787	122	69	2	41	150	72	192	8.93e-13	62.8
Msa1384370	MtrunA17_Chr5g0440931	44.595	74	41	0	74	147	73	146	1.86e-12	61.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1384370	AT5G39670.1	41.593	113	63	2	42	151	91	203	1.15e-22	89.4
Msa1384370	AT3G29000.1	46.429	112	55	4	43	151	84	193	2.51e-20	83.2
Msa1384370	AT3G47480.1	53.623	69	31	1	85	152	115	183	2.05e-15	70.1
Msa1384370	AT1G05990.1	44.330	97	48	3	57	148	48	143	3.76e-14	65.9
Msa1384370	AT4G03290.1	44.444	99	49	4	57	149	48	146	9.92e-14	65.1
Msa1384370	AT3G07490.1	49.180	61	29	1	90	148	82	142	4.30e-13	63.2
Msa1384370	AT1G66410.4	44.595	74	41	0	74	147	37	110	6.14e-13	62.0
Msa1384370	AT1G66410.3	44.595	74	41	0	74	147	37	110	6.14e-13	62.0
Msa1384370	AT5G44460.1	47.887	71	35	1	80	148	105	175	7.18e-13	63.2
Msa1384370	AT1G66410.1	44.595	74	41	0	74	147	73	146	1.15e-12	62.0

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Find 25 sgRNAs with CRISPR-Local

Find 27 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACAAAGATGGGTTTATAG+AGG	0.531105	tig0020655:+121380	Msa1384370:CDS
AAGAGAGTCTTGTGTTGTTT+GGG	0.336625	tig0020655:+121414	Msa1384370:CDS
AATCTTGAACAAGTGAAGCA+GGG	0.597395	tig0020655:+121162	Msa1384370:CDS
AGAAGAAATCATTGTTGTGA+TGG	0.498467	tig0020655:+121224	Msa1384370:CDS
ATTAAGAGTGGAGTTTGATG+GGG	0.610187	tig0020655:+121257	Msa1384370:CDS
ATTAATGCAGTTGATCAAAA+TGG	0.313664	tig0020655:+121471	Msa1384370:CDS
ATTGCTCATATGTTTGAAAA+TGG	0.169368	tig0020655:+121312	Msa1384370:CDS
ATTGTTGTGATGGAAAAGCT+GGG	0.629690	tig0020655:+121234	Msa1384370:CDS
CATTGTTGTGATGGAAAAGC+TGG	0.452065	tig0020655:+121233	Msa1384370:CDS
CTATGAGTTTGTTGTGTTGA+TGG	0.336088	tig0020655:+121512	Msa1384370:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGAAATCATTGTTGTGA+TGG	+	tig0020655:121224-121243	Msa1384370:CDS	30.0%
TGCTCATATGTTTGAAAATG+GGG	+	tig0020655:121314-121333	Msa1384370:CDS	30.0%
GTGTTTGATGAAAACAAAGA+TGG	+	tig0020655:121369-121388	Msa1384370:CDS	30.0%
TAATCTTGAACAAGTGAAGC+AGG	+	tig0020655:121161-121180	Msa1384370:CDS	35.0%
AATCTTGAACAAGTGAAGCA+GGG	+	tig0020655:121162-121181	Msa1384370:CDS	35.0%
TTGAATAGCTGCATTCAAAG+TGG	+	tig0020655:121186-121205	Msa1384370:CDS	35.0%
GATTAAGAGTGGAGTTTGAT+GGG	+	tig0020655:121256-121275	Msa1384370:CDS	35.0%
ATTAAGAGTGGAGTTTGATG+GGG	+	tig0020655:121257-121276	Msa1384370:CDS	35.0%
TCAACACAACAAACTCATAG+TGG	-	tig0020655:121512-121531	None:intergenic	35.0%
GGATTAAGAGTGGAGTTTGA+TGG	+	tig0020655:121255-121274	Msa1384370:CDS	40.0%

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Chromosome	Type	Strat	End	Strand	Name
tig0020655	gene	121093	121551	121093	ID=Msa1384370;Name=Msa1384370
tig0020655	mRNA	121093	121551	121093	ID=Msa1384370-mRNA-1;Parent=Msa1384370;Name=Msa1384370-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|152
tig0020655	exon	121093	121551	121093	ID=Msa1384370-mRNA-1:exon:9028;Parent=Msa1384370-mRNA-1
tig0020655	CDS	121093	121551	121093	ID=Msa1384370-mRNA-1:cds;Parent=Msa1384370-mRNA-1

Gene Sequence

>Msa1384370

TTGTGGAACTATGTTTTCTTTTTCTACAATTGGAAGTTATGCAATTGCATCACTCTTTCAAGCTACTCTAATCTTGAACAAGTGAAGCAGGGTTTGAATAGCTGCATTCAAAGTGGTGAGAAACTGTGCAAAGAAGAAATCATTGTTGTGATGGAAAAGCTGGGATTAAGAGTGGAGTTTGATGGGGATTGTATAGATGAGTTTGGTGATGAACAAGAAATTGCTCATATGTTTGAAAATGGGGTTAGTTTGGAAGAGTTGAATGAAGCTTTCAATGTGTTTGATGAAAACAAAGATGGGTTTATAGAGGCTGCTGAGTTGAAGAGAGTCTTGTGTTGTTTGGGATTGCATAGAGATTTTGTGGAGTGTCAGAAAATGATTAATGCAGTTGATCAAAATGGAGATGGATTAATTGACCACTATGAGTTTGTTGTGTTGATGGAACAAAGTTTTGGTTGA

Protein sequence

>Msa1384370

LWNYVFFFYNWKLCNCITLSSYSNLEQVKQGLNSCIQSGEKLCKEEIIVVMEKLGLRVEFDGDCIDEFGDEQEIAHMFENGVSLEELNEAFNVFDENKDGFIEAAELKRVLCCLGLHRDFVECQKMINAVDQNGDGLIDHYEFVVLMEQSFG*