Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401470 | XP_003613437.2 | 98.291 | 234 | 1 | 2 | 1 | 234 | 1 | 231 | 1.18e-151 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401470 | sp|B9DFG3|ISE2_ARATH | 86.555 | 119 | 16 | 0 | 116 | 234 | 122 | 240 | 8.68e-63 | 214 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401470 | G7K5N2 | 98.291 | 234 | 1 | 2 | 1 | 234 | 1 | 231 | 5.66e-152 | 461 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0630970 | Msa1401470 | 0.834691 | 2.588512e-56 | -8.615850e-47 |
| Msa0654060 | Msa1401470 | 0.821676 | 3.556482e-53 | -8.615850e-47 |
| Msa0724030 | Msa1401470 | 0.803616 | 3.201834e-49 | -8.615850e-47 |
| Msa0724050 | Msa1401470 | 0.806974 | 6.338422e-50 | -8.615850e-47 |
| Msa0763880 | Msa1401470 | 0.825234 | 5.239740e-54 | -8.615850e-47 |
| Msa0763910 | Msa1401470 | 0.827153 | 1.830707e-54 | -8.615850e-47 |
| Msa1322420 | Msa1401470 | 0.816052 | 6.744424e-52 | -8.615850e-47 |
| Msa1335720 | Msa1401470 | 0.825330 | 4.970676e-54 | -8.615850e-47 |
| Msa0530210 | Msa1401470 | 0.808134 | 3.596340e-50 | -8.615850e-47 |
| Msa0558890 | Msa1401470 | 0.803724 | 3.040569e-49 | -8.615850e-47 |
| Msa0590660 | Msa1401470 | 0.801946 | 7.083190e-49 | -8.615850e-47 |
| Msa0844100 | Msa1401470 | 0.816466 | 5.451281e-52 | -8.615850e-47 |
| Msa0964680 | Msa1401470 | 0.813657 | 2.290925e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401470 | MtrunA17_Chr5g0415021 | 98.291 | 234 | 1 | 2 | 1 | 234 | 1 | 231 | 1.09e-155 | 461 |
| Msa1401470 | MtrunA17_Chr7g0249761 | 46.809 | 94 | 48 | 1 | 140 | 233 | 52 | 143 | 7.91e-20 | 87.8 |
| Msa1401470 | MtrunA17_Chr8g0389051 | 48.387 | 93 | 46 | 1 | 141 | 233 | 76 | 166 | 2.83e-19 | 86.3 |
| Msa1401470 | MtrunA17_Chr5g0429251 | 46.067 | 89 | 46 | 1 | 141 | 229 | 73 | 159 | 3.58e-18 | 82.8 |
| Msa1401470 | MtrunA17_Chr3g0103751 | 41.667 | 96 | 53 | 1 | 138 | 233 | 338 | 430 | 6.01e-16 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1401470 | AT1G70070.1 | 86.555 | 119 | 16 | 0 | 116 | 234 | 122 | 240 | 8.82e-64 | 214 |
| Msa1401470 | AT1G59760.1 | 47.191 | 89 | 45 | 1 | 145 | 233 | 64 | 150 | 2.75e-20 | 89.7 |
| Msa1401470 | AT2G06990.1 | 44.681 | 94 | 50 | 1 | 140 | 233 | 73 | 164 | 1.55e-18 | 84.7 |
| Msa1401470 | AT3G46960.1 | 42.708 | 96 | 52 | 1 | 138 | 233 | 350 | 442 | 7.16e-17 | 79.7 |
| Msa1401470 | AT3G46960.3 | 42.708 | 96 | 52 | 1 | 138 | 233 | 222 | 314 | 8.38e-17 | 79.7 |
| Msa1401470 | AT3G46960.2 | 42.708 | 96 | 52 | 1 | 138 | 233 | 213 | 305 | 8.45e-17 | 79.7 |
Find 65 sgRNAs with CRISPR-Local
Find 230 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTAATGAAGTTAGAGAGTT+TGG | 0.269633 | tig0022546:+97646 | Msa1401470:CDS |
| ATGAGAAAGTAGTTGGAGTT+TGG | 0.277860 | tig0022546:-97351 | None:intergenic |
| TGAAGTTGAGGTTGAGGAAT+TGG | 0.284894 | tig0022546:+97579 | Msa1401470:CDS |
| GAAGTTGAGGTTGAGGAATT+GGG | 0.323426 | tig0022546:+97580 | Msa1401470:CDS |
| GGAATTTGAGAGAGCGGTTG+GGG | 0.331928 | tig0022546:-97384 | None:intergenic |
| ATCAGAAATTTCGTGAATTC+CGG | 0.332299 | tig0022546:+98547 | Msa1401470:CDS |
| TGTTCTTTCAGGGAGACTTT+TGG | 0.356442 | tig0022546:+98865 | Msa1401470:intron |
| CAGTAATGTTGGCCTTCTTA+CGG | 0.356845 | tig0022546:+98891 | Msa1401470:CDS |
| GGGAATTTGAGAGAGCGGTT+GGG | 0.361640 | tig0022546:-97385 | None:intergenic |
| AGGGAATTTGAGAGAGCGGT+TGG | 0.364531 | tig0022546:-97386 | None:intergenic |
| TTCGTCGTCGTCGGCATTGA+AGG | 0.382688 | tig0022546:-97449 | None:intergenic |
| AGAGAGAATGAGAAAGTAGT+TGG | 0.385423 | tig0022546:-97358 | None:intergenic |
| CAGCTGTTGCTACTGTGGCT+AGG | 0.388680 | tig0022546:+98481 | Msa1401470:CDS |
| TGCTGTCAACAAGGATGCTC+AGG | 0.400200 | tig0022546:+98921 | Msa1401470:CDS |
| TGATTAGACAACGCTTTAAG+AGG | 0.401685 | tig0022546:-98528 | None:intergenic |
| AGGATAAGTTTCGGTTTCGT+GGG | 0.417615 | tig0022546:-97289 | None:intergenic |
| AGTAATGTTGGCCTTCTTAC+GGG | 0.420374 | tig0022546:+98892 | Msa1401470:CDS |
| GAGGATAAGTTTCGGTTTCG+TGG | 0.421680 | tig0022546:-97290 | None:intergenic |
| AGTTGTATCCGGTGAGGCTT+CGG | 0.427083 | tig0022546:+97549 | Msa1401470:CDS |
| TGGTGAAGGTGGAGATTTGA+AGG | 0.432106 | tig0022546:-97419 | None:intergenic |
| AGCTGTTGCTACTGTGGCTA+GGG | 0.446918 | tig0022546:+98482 | Msa1401470:CDS |
| GAAGTTAGAGAGTTTGGTGT+TGG | 0.465647 | tig0022546:+97652 | Msa1401470:CDS |
| TTCTTCGTCTTCGTCGTCGT+CGG | 0.465817 | tig0022546:-97458 | None:intergenic |
| AGGAGTGAGAGGATAAGTTT+CGG | 0.466796 | tig0022546:-97298 | None:intergenic |
| AGAAAGTGTGGTGATGAGGT+TGG | 0.475020 | tig0022546:-97321 | None:intergenic |
| TCTGAGAGGTTCATCGGTGG+TGG | 0.477035 | tig0022546:+98413 | Msa1401470:CDS |
| ATCTTCATCCGAAGCCTCAC+CGG | 0.488563 | tig0022546:-97557 | None:intergenic |
| AAGTTAGAGAGTTTGGTGTT+GGG | 0.490022 | tig0022546:+97653 | Msa1401470:CDS |
| AGAGAGGGAATTTGAGAGAG+CGG | 0.490926 | tig0022546:-97390 | None:intergenic |
| ATTTGAGAGAGCGGTTGGGG+AGG | 0.498401 | tig0022546:-97381 | None:intergenic |
| AAGTTGAGGTTGAGGAATTG+GGG | 0.505378 | tig0022546:+97581 | Msa1401470:CDS |
| TGAAGATGAAGTTGAGGTTG+AGG | 0.508471 | tig0022546:+97573 | Msa1401470:CDS |
| CGACGAAGACGAAGAAGAAG+AGG | 0.510636 | tig0022546:+97465 | Msa1401470:CDS |
| CAGCAGAATCACCCGTAAGA+AGG | 0.521135 | tig0022546:-98903 | None:intergenic |
| GTGATAGCCATGGCGGGAGA+TGG | 0.528834 | tig0022546:-97262 | None:intergenic |
| AGAGAGAAAGTGTGGTGATG+AGG | 0.533410 | tig0022546:-97325 | None:intergenic |
| GTTTCTGCACCGACGAGTAG+TGG | 0.536117 | tig0022546:+98435 | Msa1401470:CDS |
| TTTGGAAGAGAGAGAAAGTG+TGG | 0.539824 | tig0022546:-97333 | None:intergenic |
| GATATGATGATGGATTTAAG+TGG | 0.550941 | tig0022546:+97605 | Msa1401470:CDS |
| TCGGCATTGAAGGTGCGGAT+TGG | 0.556559 | tig0022546:-97439 | None:intergenic |
| CGACGAAGACGATGAAGAAG+AGG | 0.561888 | tig0022546:+97495 | Msa1401470:CDS |
| TTGAAGGTGCGGATTGGTGA+AGG | 0.562137 | tig0022546:-97433 | None:intergenic |
| TATGATGAAGTAGTTGTATC+CGG | 0.562685 | tig0022546:+97538 | Msa1401470:CDS |
| GGCTGCAGCTGTTGCTACTG+TGG | 0.567848 | tig0022546:+98476 | Msa1401470:CDS |
| GGGGTGGTGATAGCCATGGC+GGG | 0.569944 | tig0022546:-97268 | None:intergenic |
| GATTTGAAGGAGAAAGAGAG+AGG | 0.570259 | tig0022546:-97406 | None:intergenic |
| AACCTCACCATCTCCCGCCA+TGG | 0.574048 | tig0022546:+97255 | None:intergenic |
| GATGAGGTTGGAGGAGTGAG+AGG | 0.575551 | tig0022546:-97309 | None:intergenic |
| ATTTGAAGGAGAAAGAGAGA+GGG | 0.579912 | tig0022546:-97405 | None:intergenic |
| AAGTGTGGTGATGAGGTTGG+AGG | 0.581525 | tig0022546:-97318 | None:intergenic |
| GAATTGGGGAGATATGATGA+TGG | 0.584365 | tig0022546:+97595 | Msa1401470:CDS |
| AAGGTGCGGATTGGTGAAGG+TGG | 0.597702 | tig0022546:-97430 | None:intergenic |
| GGATAAGTTTCGGTTTCGTG+GGG | 0.598796 | tig0022546:-97288 | None:intergenic |
| CGTCGTCGGCATTGAAGGTG+CGG | 0.602002 | tig0022546:-97444 | None:intergenic |
| TGGGAAGACTTTGATTGCGG+AGG | 0.605678 | tig0022546:+98455 | Msa1401470:CDS |
| GGGTGATTCTGCTGTCAACA+AGG | 0.609818 | tig0022546:+98912 | Msa1401470:CDS |
| TTTCTGCACCGACGAGTAGT+GGG | 0.612292 | tig0022546:+98436 | Msa1401470:CDS |
| TTCGGATGAAGATGAAGTTG+AGG | 0.613436 | tig0022546:+97567 | Msa1401470:CDS |
| TAGTGGGAAGACTTTGATTG+CGG | 0.625717 | tig0022546:+98452 | Msa1401470:CDS |
| GATAAGTTTCGGTTTCGTGG+GGG | 0.627333 | tig0022546:-97287 | None:intergenic |
| AAAGTCTTCCCACTACTCGT+CGG | 0.665132 | tig0022546:-98444 | None:intergenic |
| TGAAGAAGAGGAAGATATCG+CGG | 0.688682 | tig0022546:+97507 | Msa1401470:CDS |
| TGAAGTAGTTGTATCCGGTG+AGG | 0.708978 | tig0022546:+97543 | Msa1401470:CDS |
| GCTGTTGCTACTGTGGCTAG+GGG | 0.711698 | tig0022546:+98483 | Msa1401470:CDS |
| AGAAGAGGAAGATATCGCGG+CGG | 0.771719 | tig0022546:+97510 | Msa1401470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTACTATCAATTTTAT+TGG | - | tig0022546:97899-97918 | None:intergenic | 10.0% |
| !!! | ATTTTTACTATCAATTTTAT+TGG | - | tig0022546:97899-97918 | None:intergenic | 10.0% |
| !! | AAAAAAGTAAAAACAACTTT+GGG | + | tig0022546:98685-98704 | Msa1401470:intron | 15.0% |
| !! | AAAAAAGTAAAAACAACTTT+GGG | + | tig0022546:98685-98704 | Msa1401470:intron | 15.0% |
| !!! | AGAGAATTTAATTTTCTGTT+CGG | + | tig0022546:97768-97787 | Msa1401470:intron | 20.0% |
| !! | CAAAAAAGTAAAAACAACTT+TGG | + | tig0022546:98684-98703 | Msa1401470:intron | 20.0% |
| !!! | AGAGAATTTAATTTTCTGTT+CGG | + | tig0022546:97768-97787 | Msa1401470:intron | 20.0% |
| !! | CAAAAAAGTAAAAACAACTT+TGG | + | tig0022546:98684-98703 | Msa1401470:intron | 20.0% |
| !! | TTGCTTCTGTTTATGATTTT+CGG | + | tig0022546:97695-97714 | Msa1401470:CDS | 25.0% |
| ! | CAGAAAATTAAATTCTCTAC+AGG | - | tig0022546:97766-97785 | None:intergenic | 25.0% |
| ! | CAGTTAAAGTGATTTATGAT+TGG | + | tig0022546:97848-97867 | Msa1401470:intron | 25.0% |
| ! | AAAGTTAGAATCAATTCTGA+AGG | + | tig0022546:98228-98247 | Msa1401470:intron | 25.0% |
| !!! | TACATCTCTAGAATAAAGTT+TGG | + | tig0022546:98298-98317 | Msa1401470:intron | 25.0% |
| ! | ATACACAAATCAAAAACTCT+TGG | - | tig0022546:98341-98360 | None:intergenic | 25.0% |
| !!! | TTTTTGATTTGTGTATGTTG+TGG | + | tig0022546:98345-98364 | Msa1401470:intron | 25.0% |
| !!! | TGTTTTTTGTTTTTTGCTAG+CGG | + | tig0022546:98373-98392 | Msa1401470:intron | 25.0% |
| ! | CTTATTTACATAATCTCTTC+AGG | - | tig0022546:98664-98683 | None:intergenic | 25.0% |
| ! | CAGTGTAAAAAAAGCAATAA+CGG | - | tig0022546:98815-98834 | None:intergenic | 25.0% |
| !!! | ATTGCTTTTTTTACACTGTT+TGG | + | tig0022546:98817-98836 | Msa1401470:intron | 25.0% |
| !! | TTGCTTCTGTTTATGATTTT+CGG | + | tig0022546:97695-97714 | Msa1401470:CDS | 25.0% |
| ! | CAGAAAATTAAATTCTCTAC+AGG | - | tig0022546:97766-97785 | None:intergenic | 25.0% |
| ! | CAGTTAAAGTGATTTATGAT+TGG | + | tig0022546:97848-97867 | Msa1401470:intron | 25.0% |
| ! | AAAGTTAGAATCAATTCTGA+AGG | + | tig0022546:98228-98247 | Msa1401470:intron | 25.0% |
| !!! | TACATCTCTAGAATAAAGTT+TGG | + | tig0022546:98298-98317 | Msa1401470:intron | 25.0% |
| ! | ATACACAAATCAAAAACTCT+TGG | - | tig0022546:98341-98360 | None:intergenic | 25.0% |
| !!! | TTTTTGATTTGTGTATGTTG+TGG | + | tig0022546:98345-98364 | Msa1401470:intron | 25.0% |
| !!! | TGTTTTTTGTTTTTTGCTAG+CGG | + | tig0022546:98373-98392 | Msa1401470:intron | 25.0% |
| ! | CTTATTTACATAATCTCTTC+AGG | - | tig0022546:98664-98683 | None:intergenic | 25.0% |
| ! | CAGTGTAAAAAAAGCAATAA+CGG | - | tig0022546:98815-98834 | None:intergenic | 25.0% |
| !!! | ATTGCTTTTTTTACACTGTT+TGG | + | tig0022546:98817-98836 | Msa1401470:intron | 25.0% |
| TATGATGAAGTAGTTGTATC+CGG | + | tig0022546:97538-97557 | Msa1401470:CDS | 30.0% | |
| !! | GATATGATGATGGATTTAAG+TGG | + | tig0022546:97605-97624 | Msa1401470:CDS | 30.0% |
| TGTAATGAAGTTAGAGAGTT+TGG | + | tig0022546:97646-97665 | Msa1401470:CDS | 30.0% | |
| ! | TTTTCGGATTGATAAGTTTC+AGG | + | tig0022546:97711-97730 | Msa1401470:CDS | 30.0% |
| GATTTATGATTGGACATGTT+TGG | + | tig0022546:97858-97877 | Msa1401470:intron | 30.0% | |
| TCAGAACACTTTCTCATATT+TGG | - | tig0022546:97952-97971 | None:intergenic | 30.0% | |
| ! | CTATTTGTGTTTGATGCTTT+TGG | + | tig0022546:97991-98010 | Msa1401470:intron | 30.0% |
| TCTTATGCAACGAGTTTAAA+GGG | + | tig0022546:98039-98058 | Msa1401470:intron | 30.0% | |
| ATCAGAAATTTCGTGAATTC+CGG | + | tig0022546:98547-98566 | Msa1401470:CDS | 30.0% | |
| TATGATGAAGTAGTTGTATC+CGG | + | tig0022546:97538-97557 | Msa1401470:CDS | 30.0% | |
| !! | GATATGATGATGGATTTAAG+TGG | + | tig0022546:97605-97624 | Msa1401470:CDS | 30.0% |
| TGTAATGAAGTTAGAGAGTT+TGG | + | tig0022546:97646-97665 | Msa1401470:CDS | 30.0% | |
| ! | TTTTCGGATTGATAAGTTTC+AGG | + | tig0022546:97711-97730 | Msa1401470:CDS | 30.0% |
| GATTTATGATTGGACATGTT+TGG | + | tig0022546:97858-97877 | Msa1401470:intron | 30.0% | |
| TCAGAACACTTTCTCATATT+TGG | - | tig0022546:97952-97971 | None:intergenic | 30.0% | |
| ! | CTATTTGTGTTTGATGCTTT+TGG | + | tig0022546:97991-98010 | Msa1401470:intron | 30.0% |
| TCTTATGCAACGAGTTTAAA+GGG | + | tig0022546:98039-98058 | Msa1401470:intron | 30.0% | |
| ATCAGAAATTTCGTGAATTC+CGG | + | tig0022546:98547-98566 | Msa1401470:CDS | 30.0% | |
| ATGAGAAAGTAGTTGGAGTT+TGG | - | tig0022546:97354-97373 | None:intergenic | 35.0% | |
| AGAGAGAATGAGAAAGTAGT+TGG | - | tig0022546:97361-97380 | None:intergenic | 35.0% | |
| ATTTGAAGGAGAAAGAGAGA+GGG | - | tig0022546:97408-97427 | None:intergenic | 35.0% | |
| !! | AAGTTAGAGAGTTTGGTGTT+GGG | + | tig0022546:97653-97672 | Msa1401470:CDS | 35.0% |
| !! | GGATTGATAAGTTTCAGGTT+TGG | + | tig0022546:97716-97735 | Msa1401470:intron | 35.0% |
| AGATCCAAAACCTATATGCT+AGG | - | tig0022546:98020-98039 | None:intergenic | 35.0% | |
| CTCTTATGCAACGAGTTTAA+AGG | + | tig0022546:98038-98057 | Msa1401470:intron | 35.0% | |
| !!! | GGTGTGGTTTTTAAGATGAT+TGG | + | tig0022546:98097-98116 | Msa1401470:intron | 35.0% |
| TGAAATGCAAACAGTCAACA+AGG | - | tig0022546:98153-98172 | None:intergenic | 35.0% | |
| ! | TGATTAGACAACGCTTTAAG+AGG | - | tig0022546:98531-98550 | None:intergenic | 35.0% |
| CTCAATTGTTCATCACATAC+CGG | - | tig0022546:98569-98588 | None:intergenic | 35.0% | |
| GATTGCAAGTATTTATGCAC+AGG | + | tig0022546:98622-98641 | Msa1401470:intron | 35.0% | |
| !! | ACTTTTGGTGACAGTAATGT+TGG | + | tig0022546:98880-98899 | Msa1401470:CDS | 35.0% |
| ATGAGAAAGTAGTTGGAGTT+TGG | - | tig0022546:97354-97373 | None:intergenic | 35.0% | |
| AGAGAGAATGAGAAAGTAGT+TGG | - | tig0022546:97361-97380 | None:intergenic | 35.0% | |
| ATTTGAAGGAGAAAGAGAGA+GGG | - | tig0022546:97408-97427 | None:intergenic | 35.0% | |
| !! | AAGTTAGAGAGTTTGGTGTT+GGG | + | tig0022546:97653-97672 | Msa1401470:CDS | 35.0% |
| !! | GGATTGATAAGTTTCAGGTT+TGG | + | tig0022546:97716-97735 | Msa1401470:intron | 35.0% |
| AGATCCAAAACCTATATGCT+AGG | - | tig0022546:98020-98039 | None:intergenic | 35.0% | |
| CTCTTATGCAACGAGTTTAA+AGG | + | tig0022546:98038-98057 | Msa1401470:intron | 35.0% | |
| !!! | GGTGTGGTTTTTAAGATGAT+TGG | + | tig0022546:98097-98116 | Msa1401470:intron | 35.0% |
| TGAAATGCAAACAGTCAACA+AGG | - | tig0022546:98153-98172 | None:intergenic | 35.0% | |
| ! | TGATTAGACAACGCTTTAAG+AGG | - | tig0022546:98531-98550 | None:intergenic | 35.0% |
| CTCAATTGTTCATCACATAC+CGG | - | tig0022546:98569-98588 | None:intergenic | 35.0% | |
| GATTGCAAGTATTTATGCAC+AGG | + | tig0022546:98622-98641 | Msa1401470:intron | 35.0% | |
| !! | ACTTTTGGTGACAGTAATGT+TGG | + | tig0022546:98880-98899 | Msa1401470:CDS | 35.0% |
| AGGATAAGTTTCGGTTTCGT+GGG | - | tig0022546:97292-97311 | None:intergenic | 40.0% | |
| AGGAGTGAGAGGATAAGTTT+CGG | - | tig0022546:97301-97320 | None:intergenic | 40.0% | |
| TTTGGAAGAGAGAGAAAGTG+TGG | - | tig0022546:97336-97355 | None:intergenic | 40.0% | |
| GATTTGAAGGAGAAAGAGAG+AGG | - | tig0022546:97409-97428 | None:intergenic | 40.0% | |
| TGAAGAAGAGGAAGATATCG+CGG | + | tig0022546:97507-97526 | Msa1401470:CDS | 40.0% | |
| TTCGGATGAAGATGAAGTTG+AGG | + | tig0022546:97567-97586 | Msa1401470:CDS | 40.0% | |
| TGAAGATGAAGTTGAGGTTG+AGG | + | tig0022546:97573-97592 | Msa1401470:CDS | 40.0% | |
| TGAAGTTGAGGTTGAGGAAT+TGG | + | tig0022546:97579-97598 | Msa1401470:CDS | 40.0% | |
| GAAGTTGAGGTTGAGGAATT+GGG | + | tig0022546:97580-97599 | Msa1401470:CDS | 40.0% | |
| AAGTTGAGGTTGAGGAATTG+GGG | + | tig0022546:97581-97600 | Msa1401470:CDS | 40.0% | |
| GAATTGGGGAGATATGATGA+TGG | + | tig0022546:97595-97614 | Msa1401470:CDS | 40.0% | |
| !! | GAAGTTAGAGAGTTTGGTGT+TGG | + | tig0022546:97652-97671 | Msa1401470:CDS | 40.0% |
| !!! | CTTTTGGCTTCCTAGCATAT+AGG | + | tig0022546:98007-98026 | Msa1401470:intron | 40.0% |
| ! | GCTTCCTAGCATATAGGTTT+TGG | + | tig0022546:98013-98032 | Msa1401470:intron | 40.0% |
| ATAGCAATGTTGTGTCTCCT+AGG | + | tig0022546:98068-98087 | Msa1401470:intron | 40.0% | |
| TGTTGTGTCTCCTAGGTTTA+TGG | + | tig0022546:98075-98094 | Msa1401470:intron | 40.0% | |
| GTTGTGTCTCCTAGGTTTAT+GGG | + | tig0022546:98076-98095 | Msa1401470:intron | 40.0% | |
| AAAACCACACCCATAAACCT+AGG | - | tig0022546:98088-98107 | None:intergenic | 40.0% | |
| !!! | TTGGTTTTGCCATCCAGAAA+CGG | + | tig0022546:98116-98135 | Msa1401470:intron | 40.0% |
| ! | AAGTTTGGCTTCTCTAGAAG+TGG | + | tig0022546:98313-98332 | Msa1401470:intron | 40.0% |
| !! | AGCTTTTCTGAGAGGTTCAT+CGG | + | tig0022546:98407-98426 | Msa1401470:CDS | 40.0% |
| TAGTGGGAAGACTTTGATTG+CGG | + | tig0022546:98452-98471 | Msa1401470:CDS | 40.0% | |
| ACACTGTTTGGAAGTTGAAC+TGG | + | tig0022546:98829-98848 | Msa1401470:intron | 40.0% | |
| TGGGTTGTTGTGTTCTTTCA+GGG | + | tig0022546:98855-98874 | Msa1401470:intron | 40.0% | |
| ! | TGTTCTTTCAGGGAGACTTT+TGG | + | tig0022546:98865-98884 | Msa1401470:intron | 40.0% |
| !! | CAGTAATGTTGGCCTTCTTA+CGG | + | tig0022546:98891-98910 | Msa1401470:CDS | 40.0% |
| !! | AGTAATGTTGGCCTTCTTAC+GGG | + | tig0022546:98892-98911 | Msa1401470:CDS | 40.0% |
| AGGATAAGTTTCGGTTTCGT+GGG | - | tig0022546:97292-97311 | None:intergenic | 40.0% | |
| AGGAGTGAGAGGATAAGTTT+CGG | - | tig0022546:97301-97320 | None:intergenic | 40.0% | |
| TTTGGAAGAGAGAGAAAGTG+TGG | - | tig0022546:97336-97355 | None:intergenic | 40.0% | |
| GATTTGAAGGAGAAAGAGAG+AGG | - | tig0022546:97409-97428 | None:intergenic | 40.0% | |
| TGAAGAAGAGGAAGATATCG+CGG | + | tig0022546:97507-97526 | Msa1401470:CDS | 40.0% | |
| TTCGGATGAAGATGAAGTTG+AGG | + | tig0022546:97567-97586 | Msa1401470:CDS | 40.0% | |
| TGAAGATGAAGTTGAGGTTG+AGG | + | tig0022546:97573-97592 | Msa1401470:CDS | 40.0% | |
| TGAAGTTGAGGTTGAGGAAT+TGG | + | tig0022546:97579-97598 | Msa1401470:CDS | 40.0% | |
| GAAGTTGAGGTTGAGGAATT+GGG | + | tig0022546:97580-97599 | Msa1401470:CDS | 40.0% | |
| AAGTTGAGGTTGAGGAATTG+GGG | + | tig0022546:97581-97600 | Msa1401470:CDS | 40.0% | |
| GAATTGGGGAGATATGATGA+TGG | + | tig0022546:97595-97614 | Msa1401470:CDS | 40.0% | |
| !! | GAAGTTAGAGAGTTTGGTGT+TGG | + | tig0022546:97652-97671 | Msa1401470:CDS | 40.0% |
| !!! | CTTTTGGCTTCCTAGCATAT+AGG | + | tig0022546:98007-98026 | Msa1401470:intron | 40.0% |
| ! | GCTTCCTAGCATATAGGTTT+TGG | + | tig0022546:98013-98032 | Msa1401470:intron | 40.0% |
| ATAGCAATGTTGTGTCTCCT+AGG | + | tig0022546:98068-98087 | Msa1401470:intron | 40.0% | |
| TGTTGTGTCTCCTAGGTTTA+TGG | + | tig0022546:98075-98094 | Msa1401470:intron | 40.0% | |
| GTTGTGTCTCCTAGGTTTAT+GGG | + | tig0022546:98076-98095 | Msa1401470:intron | 40.0% | |
| AAAACCACACCCATAAACCT+AGG | - | tig0022546:98088-98107 | None:intergenic | 40.0% | |
| !!! | TTGGTTTTGCCATCCAGAAA+CGG | + | tig0022546:98116-98135 | Msa1401470:intron | 40.0% |
| ! | AAGTTTGGCTTCTCTAGAAG+TGG | + | tig0022546:98313-98332 | Msa1401470:intron | 40.0% |
| !! | AGCTTTTCTGAGAGGTTCAT+CGG | + | tig0022546:98407-98426 | Msa1401470:CDS | 40.0% |
| TAGTGGGAAGACTTTGATTG+CGG | + | tig0022546:98452-98471 | Msa1401470:CDS | 40.0% | |
| ACACTGTTTGGAAGTTGAAC+TGG | + | tig0022546:98829-98848 | Msa1401470:intron | 40.0% | |
| TGGGTTGTTGTGTTCTTTCA+GGG | + | tig0022546:98855-98874 | Msa1401470:intron | 40.0% | |
| ! | TGTTCTTTCAGGGAGACTTT+TGG | + | tig0022546:98865-98884 | Msa1401470:intron | 40.0% |
| !! | CAGTAATGTTGGCCTTCTTA+CGG | + | tig0022546:98891-98910 | Msa1401470:CDS | 40.0% |
| !! | AGTAATGTTGGCCTTCTTAC+GGG | + | tig0022546:98892-98911 | Msa1401470:CDS | 40.0% |
| GATAAGTTTCGGTTTCGTGG+GGG | - | tig0022546:97290-97309 | None:intergenic | 45.0% | |
| GGATAAGTTTCGGTTTCGTG+GGG | - | tig0022546:97291-97310 | None:intergenic | 45.0% | |
| GAGGATAAGTTTCGGTTTCG+TGG | - | tig0022546:97293-97312 | None:intergenic | 45.0% | |
| ! | AGAAAGTGTGGTGATGAGGT+TGG | - | tig0022546:97324-97343 | None:intergenic | 45.0% |
| ! | AGAGAGAAAGTGTGGTGATG+AGG | - | tig0022546:97328-97347 | None:intergenic | 45.0% |
| AGAGAGGGAATTTGAGAGAG+CGG | - | tig0022546:97393-97412 | None:intergenic | 45.0% | |
| TGGTGAAGGTGGAGATTTGA+AGG | - | tig0022546:97422-97441 | None:intergenic | 45.0% | |
| TGAAGTAGTTGTATCCGGTG+AGG | + | tig0022546:97543-97562 | Msa1401470:CDS | 45.0% | |
| TGCCATCCAGAAACGGTTAA+CGG | + | tig0022546:98123-98142 | Msa1401470:intron | 45.0% | |
| ! | GCGATTCAAGCTTTTCTGAG+AGG | + | tig0022546:98399-98418 | Msa1401470:CDS | 45.0% |
| !! | TTTTCTGAGAGGTTCATCGG+TGG | + | tig0022546:98410-98429 | Msa1401470:CDS | 45.0% |
| AAAGTCTTCCCACTACTCGT+CGG | - | tig0022546:98447-98466 | None:intergenic | 45.0% | |
| CTGTTTGGAAGTTGAACTGG+TGG | + | tig0022546:98832-98851 | Msa1401470:intron | 45.0% | |
| TTTGGAAGTTGAACTGGTGG+TGG | + | tig0022546:98835-98854 | Msa1401470:intron | 45.0% | |
| TTGGAAGTTGAACTGGTGGT+GGG | + | tig0022546:98836-98855 | Msa1401470:intron | 45.0% | |
| ! | GTGGGTTGTTGTGTTCTTTC+AGG | + | tig0022546:98854-98873 | Msa1401470:intron | 45.0% |
| GATAAGTTTCGGTTTCGTGG+GGG | - | tig0022546:97290-97309 | None:intergenic | 45.0% | |
| GGATAAGTTTCGGTTTCGTG+GGG | - | tig0022546:97291-97310 | None:intergenic | 45.0% | |
| GAGGATAAGTTTCGGTTTCG+TGG | - | tig0022546:97293-97312 | None:intergenic | 45.0% | |
| ! | AGAAAGTGTGGTGATGAGGT+TGG | - | tig0022546:97324-97343 | None:intergenic | 45.0% |
| ! | AGAGAGAAAGTGTGGTGATG+AGG | - | tig0022546:97328-97347 | None:intergenic | 45.0% |
| AGAGAGGGAATTTGAGAGAG+CGG | - | tig0022546:97393-97412 | None:intergenic | 45.0% | |
| TGGTGAAGGTGGAGATTTGA+AGG | - | tig0022546:97422-97441 | None:intergenic | 45.0% | |
| TGAAGTAGTTGTATCCGGTG+AGG | + | tig0022546:97543-97562 | Msa1401470:CDS | 45.0% | |
| TGCCATCCAGAAACGGTTAA+CGG | + | tig0022546:98123-98142 | Msa1401470:intron | 45.0% | |
| ! | GCGATTCAAGCTTTTCTGAG+AGG | + | tig0022546:98399-98418 | Msa1401470:CDS | 45.0% |
| !! | TTTTCTGAGAGGTTCATCGG+TGG | + | tig0022546:98410-98429 | Msa1401470:CDS | 45.0% |
| AAAGTCTTCCCACTACTCGT+CGG | - | tig0022546:98447-98466 | None:intergenic | 45.0% | |
| CTGTTTGGAAGTTGAACTGG+TGG | + | tig0022546:98832-98851 | Msa1401470:intron | 45.0% | |
| TTTGGAAGTTGAACTGGTGG+TGG | + | tig0022546:98835-98854 | Msa1401470:intron | 45.0% | |
| TTGGAAGTTGAACTGGTGGT+GGG | + | tig0022546:98836-98855 | Msa1401470:intron | 45.0% | |
| ! | GTGGGTTGTTGTGTTCTTTC+AGG | + | tig0022546:98854-98873 | Msa1401470:intron | 45.0% |
| ! | AAGTGTGGTGATGAGGTTGG+AGG | - | tig0022546:97321-97340 | None:intergenic | 50.0% |
| GGAATTTGAGAGAGCGGTTG+GGG | - | tig0022546:97387-97406 | None:intergenic | 50.0% | |
| GGGAATTTGAGAGAGCGGTT+GGG | - | tig0022546:97388-97407 | None:intergenic | 50.0% | |
| AGGGAATTTGAGAGAGCGGT+TGG | - | tig0022546:97389-97408 | None:intergenic | 50.0% | |
| !! | TTGAAGGTGCGGATTGGTGA+AGG | - | tig0022546:97436-97455 | None:intergenic | 50.0% |
| TTCTTCGTCTTCGTCGTCGT+CGG | - | tig0022546:97461-97480 | None:intergenic | 50.0% | |
| CGACGAAGACGAAGAAGAAG+AGG | + | tig0022546:97465-97484 | Msa1401470:CDS | 50.0% | |
| CGACGAAGACGATGAAGAAG+AGG | + | tig0022546:97495-97514 | Msa1401470:CDS | 50.0% | |
| AGAAGAGGAAGATATCGCGG+CGG | + | tig0022546:97510-97529 | Msa1401470:CDS | 50.0% | |
| AGTTGTATCCGGTGAGGCTT+CGG | + | tig0022546:97549-97568 | Msa1401470:CDS | 50.0% | |
| ATCTTCATCCGAAGCCTCAC+CGG | - | tig0022546:97560-97579 | None:intergenic | 50.0% | |
| GTCTCCTAGGTTTATGGGTG+TGG | + | tig0022546:98081-98100 | Msa1401470:intron | 50.0% | |
| ! | TTTCTGCACCGACGAGTAGT+GGG | + | tig0022546:98436-98455 | Msa1401470:CDS | 50.0% |
| TGGGAAGACTTTGATTGCGG+AGG | + | tig0022546:98455-98474 | Msa1401470:CDS | 50.0% | |
| AGCTGTTGCTACTGTGGCTA+GGG | + | tig0022546:98482-98501 | Msa1401470:CDS | 50.0% | |
| CAGCAGAATCACCCGTAAGA+AGG | - | tig0022546:98906-98925 | None:intergenic | 50.0% | |
| GGGTGATTCTGCTGTCAACA+AGG | + | tig0022546:98912-98931 | Msa1401470:CDS | 50.0% | |
| ! | AAGTGTGGTGATGAGGTTGG+AGG | - | tig0022546:97321-97340 | None:intergenic | 50.0% |
| GGAATTTGAGAGAGCGGTTG+GGG | - | tig0022546:97387-97406 | None:intergenic | 50.0% | |
| GGGAATTTGAGAGAGCGGTT+GGG | - | tig0022546:97388-97407 | None:intergenic | 50.0% | |
| AGGGAATTTGAGAGAGCGGT+TGG | - | tig0022546:97389-97408 | None:intergenic | 50.0% | |
| !! | TTGAAGGTGCGGATTGGTGA+AGG | - | tig0022546:97436-97455 | None:intergenic | 50.0% |
| TTCTTCGTCTTCGTCGTCGT+CGG | - | tig0022546:97461-97480 | None:intergenic | 50.0% | |
| CGACGAAGACGAAGAAGAAG+AGG | + | tig0022546:97465-97484 | Msa1401470:CDS | 50.0% | |
| CGACGAAGACGATGAAGAAG+AGG | + | tig0022546:97495-97514 | Msa1401470:CDS | 50.0% | |
| AGAAGAGGAAGATATCGCGG+CGG | + | tig0022546:97510-97529 | Msa1401470:CDS | 50.0% | |
| AGTTGTATCCGGTGAGGCTT+CGG | + | tig0022546:97549-97568 | Msa1401470:CDS | 50.0% | |
| ATCTTCATCCGAAGCCTCAC+CGG | - | tig0022546:97560-97579 | None:intergenic | 50.0% | |
| GTCTCCTAGGTTTATGGGTG+TGG | + | tig0022546:98081-98100 | Msa1401470:intron | 50.0% | |
| ! | TTTCTGCACCGACGAGTAGT+GGG | + | tig0022546:98436-98455 | Msa1401470:CDS | 50.0% |
| TGGGAAGACTTTGATTGCGG+AGG | + | tig0022546:98455-98474 | Msa1401470:CDS | 50.0% | |
| AGCTGTTGCTACTGTGGCTA+GGG | + | tig0022546:98482-98501 | Msa1401470:CDS | 50.0% | |
| CAGCAGAATCACCCGTAAGA+AGG | - | tig0022546:98906-98925 | None:intergenic | 50.0% | |
| GGGTGATTCTGCTGTCAACA+AGG | + | tig0022546:98912-98931 | Msa1401470:CDS | 50.0% | |
| AAGTTTCGGTTTCGTGGGGG+TGG | - | tig0022546:97287-97306 | None:intergenic | 55.0% | |
| GATGAGGTTGGAGGAGTGAG+AGG | - | tig0022546:97312-97331 | None:intergenic | 55.0% | |
| ATTTGAGAGAGCGGTTGGGG+AGG | - | tig0022546:97384-97403 | None:intergenic | 55.0% | |
| !! | AAGGTGCGGATTGGTGAAGG+TGG | - | tig0022546:97433-97452 | None:intergenic | 55.0% |
| ! | TCGGCATTGAAGGTGCGGAT+TGG | - | tig0022546:97442-97461 | None:intergenic | 55.0% |
| ! | TTCGTCGTCGTCGGCATTGA+AGG | - | tig0022546:97452-97471 | None:intergenic | 55.0% |
| ! | CGCCGTTAACCGTTTCTGGA+TGG | - | tig0022546:98128-98147 | None:intergenic | 55.0% |
| TCTGAGAGGTTCATCGGTGG+TGG | + | tig0022546:98413-98432 | Msa1401470:CDS | 55.0% | |
| ! | GTTTCTGCACCGACGAGTAG+TGG | + | tig0022546:98435-98454 | Msa1401470:CDS | 55.0% |
| CAGCTGTTGCTACTGTGGCT+AGG | + | tig0022546:98481-98500 | Msa1401470:CDS | 55.0% | |
| GCTGTTGCTACTGTGGCTAG+GGG | + | tig0022546:98483-98502 | Msa1401470:CDS | 55.0% | |
| AAGTTTCGGTTTCGTGGGGG+TGG | - | tig0022546:97287-97306 | None:intergenic | 55.0% | |
| GATGAGGTTGGAGGAGTGAG+AGG | - | tig0022546:97312-97331 | None:intergenic | 55.0% | |
| ATTTGAGAGAGCGGTTGGGG+AGG | - | tig0022546:97384-97403 | None:intergenic | 55.0% | |
| !! | AAGGTGCGGATTGGTGAAGG+TGG | - | tig0022546:97433-97452 | None:intergenic | 55.0% |
| ! | TCGGCATTGAAGGTGCGGAT+TGG | - | tig0022546:97442-97461 | None:intergenic | 55.0% |
| ! | TTCGTCGTCGTCGGCATTGA+AGG | - | tig0022546:97452-97471 | None:intergenic | 55.0% |
| ! | CGCCGTTAACCGTTTCTGGA+TGG | - | tig0022546:98128-98147 | None:intergenic | 55.0% |
| TCTGAGAGGTTCATCGGTGG+TGG | + | tig0022546:98413-98432 | Msa1401470:CDS | 55.0% | |
| ! | GTTTCTGCACCGACGAGTAG+TGG | + | tig0022546:98435-98454 | Msa1401470:CDS | 55.0% |
| CAGCTGTTGCTACTGTGGCT+AGG | + | tig0022546:98481-98500 | Msa1401470:CDS | 55.0% | |
| GCTGTTGCTACTGTGGCTAG+GGG | + | tig0022546:98483-98502 | Msa1401470:CDS | 55.0% | |
| ! | GTGATAGCCATGGCGGGAGA+TGG | - | tig0022546:97265-97284 | None:intergenic | 60.0% |
| ! | CGTCGTCGGCATTGAAGGTG+CGG | - | tig0022546:97447-97466 | None:intergenic | 60.0% |
| GGTGCGCCGTTAACCGTTTC+TGG | - | tig0022546:98132-98151 | None:intergenic | 60.0% | |
| GGCTGCAGCTGTTGCTACTG+TGG | + | tig0022546:98476-98495 | Msa1401470:CDS | 60.0% | |
| ! | GTGATAGCCATGGCGGGAGA+TGG | - | tig0022546:97265-97284 | None:intergenic | 60.0% |
| ! | CGTCGTCGGCATTGAAGGTG+CGG | - | tig0022546:97447-97466 | None:intergenic | 60.0% |
| GGTGCGCCGTTAACCGTTTC+TGG | - | tig0022546:98132-98151 | None:intergenic | 60.0% | |
| GGCTGCAGCTGTTGCTACTG+TGG | + | tig0022546:98476-98495 | Msa1401470:CDS | 60.0% | |
| GGGGTGGTGATAGCCATGGC+GGG | - | tig0022546:97271-97290 | None:intergenic | 65.0% | |
| GGGGGTGGTGATAGCCATGG+CGG | - | tig0022546:97272-97291 | None:intergenic | 65.0% | |
| CGTGGGGGTGGTGATAGCCA+TGG | - | tig0022546:97275-97294 | None:intergenic | 65.0% | |
| GGGGTGGTGATAGCCATGGC+GGG | - | tig0022546:97271-97290 | None:intergenic | 65.0% | |
| GGGGGTGGTGATAGCCATGG+CGG | - | tig0022546:97272-97291 | None:intergenic | 65.0% | |
| CGTGGGGGTGGTGATAGCCA+TGG | - | tig0022546:97275-97294 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022546 | gene | 97262 | 98942 | 97262 | ID=Msa1401470;Name=Msa1401470 |
| tig0022546 | mRNA | 97262 | 98942 | 97262 | ID=Msa1401470-mRNA-1;Parent=Msa1401470;Name=Msa1401470-mRNA-1;_AED=0.05;_eAED=0.05;_QI=12|0.5|0.66|0.66|1|1|3|0|234 |
| tig0022546 | exon | 97262 | 97732 | 97262 | ID=Msa1401470-mRNA-1:exon:18348;Parent=Msa1401470-mRNA-1 |
| tig0022546 | exon | 98393 | 98568 | 98393 | ID=Msa1401470-mRNA-1:exon:18349;Parent=Msa1401470-mRNA-1 |
| tig0022546 | exon | 98876 | 98942 | 98876 | ID=Msa1401470-mRNA-1:exon:18350;Parent=Msa1401470-mRNA-1 |
| tig0022546 | five_prime_UTR | 97262 | 97273 | 97262 | ID=Msa1401470-mRNA-1:five_prime_utr;Parent=Msa1401470-mRNA-1 |
| tig0022546 | CDS | 97274 | 97732 | 97274 | ID=Msa1401470-mRNA-1:cds;Parent=Msa1401470-mRNA-1 |
| tig0022546 | CDS | 98393 | 98568 | 98393 | ID=Msa1401470-mRNA-1:cds;Parent=Msa1401470-mRNA-1 |
| tig0022546 | CDS | 98876 | 98942 | 98876 | ID=Msa1401470-mRNA-1:cds;Parent=Msa1401470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
