AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0964680


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0964680 MtrunA17_Chr6g0485671 95.024 422 21 0 28 449 28 449 0.0 833
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0964680 AT5G19540.1 67.407 405 128 3 51 451 54 458 0.0 573
Msa0964680 AT5G19540.2 67.407 405 128 3 51 451 54 458 0.0 573

Find 107 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGACAATGCTTCTATTTC+AGG 0.070406 6_3:-91523219 None:intergenic
TGGCGGTGGATCTGTGGTTT+TGG 0.230954 6_3:+91524183 Msa0964680:CDS
TCATCGACTCAACAAGAAAA+TGG 0.230955 6_3:+91519943 Msa0964680:CDS
AACTCAAAACCTGGAGTAAT+TGG 0.256723 6_3:-91522899 None:intergenic
AATAAGATTGCCATACTTTA+CGG 0.263181 6_3:+91523954 Msa0964680:CDS
GGTAATTGAGACAATCTAAT+TGG 0.268697 6_3:-91522833 None:intergenic
AATTATTACCATATGATTTA+CGG 0.278611 6_3:+91524539 Msa0964680:three_prime_UTR
CGTAGGACTCAAGCTCCTTC+TGG 0.285730 6_3:-91522656 None:intergenic
TCAATTACCAGTCTGAAAAT+TGG 0.290529 6_3:+91522847 Msa0964680:CDS
GAATTTGAAAAGGGTGGTTT+TGG 0.293134 6_3:-91519892 None:intergenic
ACCTCTTTGGGGCATGGAAA+TGG 0.304134 6_3:+91524430 Msa0964680:three_prime_UTR
GAATTTGAGCCATCTGTCTT+TGG 0.312878 6_3:-91522797 None:intergenic
AAACGCTTCCGATGAGAAAA+AGG 0.312911 6_3:-91523164 None:intergenic
TCTTCGGTACCACGGTGAAT+TGG 0.317020 6_3:+91524213 Msa0964680:CDS
GCTCTTAAAACTTTGAGAAA+TGG 0.323854 6_3:-91524406 None:intergenic
AAGACAGTAGCTAGGGCTTC+AGG 0.348947 6_3:+91524107 Msa0964680:CDS
TTAAAAGATGATATGATCAT+TGG 0.353086 6_3:+91524277 Msa0964680:exon
CTCTTAAAACTTTGAGAAAT+GGG 0.360056 6_3:-91524405 None:intergenic
CTCCATGGATCAAGATCTTC+CGG 0.363319 6_3:-91523093 None:intergenic
CGATTGTGTCCTTTATGAAA+TGG 0.381202 6_3:+91522677 Msa0964680:CDS
ATAAGATTGCCATACTTTAC+GGG 0.388932 6_3:+91523955 Msa0964680:CDS
CTTCGGTACCACGGTGAATT+GGG 0.392853 6_3:+91524214 Msa0964680:CDS
GAGGAGAAATCTGTTATAAT+TGG 0.399530 6_3:+91523876 Msa0964680:CDS
CTCAATCTCCTTCCGAGATC+CGG 0.412651 6_3:-91523990 None:intergenic
CCTCTTTGGGGCATGGAAAT+GGG 0.413369 6_3:+91524431 Msa0964680:three_prime_UTR
GTACTTCCTATGCCGCTTGT+TGG 0.414173 6_3:+91523141 Msa0964680:CDS
ATGCATGTAATCATAAGAAA+TGG 0.414753 6_3:+91524457 Msa0964680:three_prime_UTR
TGCTAGCTACCATTTCATAA+AGG 0.415690 6_3:-91522686 None:intergenic
AAGAAAAGAAGGAAAAGCTT+TGG 0.417455 6_3:-91519860 None:intergenic
AAAGGGATTGATGGTTCTAC+TGG 0.424242 6_3:+91520021 Msa0964680:CDS
ATTTCAGGATATTCTGATGC+TGG 0.424776 6_3:-91523204 None:intergenic
AATGTTGCAGCCTTCAATTC+CGG 0.426914 6_3:+91523074 Msa0964680:CDS
GGAAAAGCTTTGGAAGTTGA+TGG 0.433291 6_3:-91519850 None:intergenic
GATATAAGAAGAAGTTTCCT+TGG 0.434374 6_3:+91520067 Msa0964680:CDS
TTGCTTTGTAGAAACTGTTC+TGG 0.435673 6_3:-91519970 None:intergenic
GTGTTGTACTATGATGTTGT+TGG 0.444714 6_3:-91519754 None:intergenic
AGGTTCAAGAAAGGGATTGA+TGG 0.445776 6_3:+91520012 Msa0964680:CDS
GGAAAACCAACAAGAAAAGA+AGG 0.456001 6_3:-91519871 None:intergenic
GGTGGCCACATGCCGGATCT+CGG 0.463228 6_3:+91523978 Msa0964680:CDS
GGATAACAGCTTGGTCCATA+AGG 0.467846 6_3:+91524048 Msa0964680:CDS
GACAGATGGCTCAAATTCTC+AGG 0.469611 6_3:+91522802 Msa0964680:CDS
ATGTTACCACAGAAATTCTT+CGG 0.470066 6_3:+91524243 Msa0964680:CDS
CTTGTGAACCGTAAATCATA+TGG 0.477047 6_3:-91524547 None:intergenic
TTTGAGGGTGGAATTTGAAA+AGG 0.479151 6_3:-91519902 None:intergenic
TCAAGATCTTCCGGAATTGA+AGG 0.479834 6_3:-91523084 None:intergenic
CGGATCTCGGAAGGAGATTG+AGG 0.480710 6_3:+91523991 Msa0964680:CDS
CGGAAGCGTTTGTGCAAATG+TGG 0.481614 6_3:+91523176 Msa0964680:CDS
CAGCTTGGTCCATAAGGAAA+AGG 0.483406 6_3:+91524054 Msa0964680:CDS
CGTTTCTGAAGACAGTAGCT+AGG 0.484748 6_3:+91524099 Msa0964680:CDS
AGAGCTACCTCTTTGGGGCA+TGG 0.486812 6_3:+91524424 Msa0964680:three_prime_UTR
ATTTCATGAGGTTCAAGAAA+GGG 0.490455 6_3:+91520004 Msa0964680:CDS
TGAGACCTTCCAATTACTCC+AGG 0.492747 6_3:+91522890 Msa0964680:CDS
TGATGTAAGTGCAGCAATGA+AGG 0.493608 6_3:+91523245 Msa0964680:CDS
TTGAGGGTGGAATTTGAAAA+GGG 0.494338 6_3:-91519901 None:intergenic
AAAAGGCCAACAAGCGGCAT+AGG 0.495123 6_3:-91523147 None:intergenic
CATCGACTCAACAAGAAAAT+GGG 0.498261 6_3:+91519944 Msa0964680:CDS
TTATGAAATGGTAGCTAGCA+AGG 0.507890 6_3:+91522689 Msa0964680:CDS
GAGTTCGATTTAGTCCCGTC+TGG 0.510649 6_3:+91524017 Msa0964680:CDS
CTAGCTACTGTCTTCAGAAA+CGG 0.511584 6_3:-91524098 None:intergenic
ACTCAAGTGTTCTACATATG+TGG 0.513154 6_3:+91524483 Msa0964680:three_prime_UTR
GTAAAGCTTGACACAAAATA+CGG 0.534541 6_3:+91523845 Msa0964680:intron
GATTTCATGAGGTTCAAGAA+AGG 0.544931 6_3:+91520003 Msa0964680:CDS
CAATCTTGGCGGTGGATCTG+TGG 0.546535 6_3:+91524177 Msa0964680:CDS
ACAGAAATTCTTCGGTATGT+TGG 0.549627 6_3:+91524251 Msa0964680:CDS
AGAGAATATGAGAAACCCTA+TGG 0.555242 6_3:+91522719 Msa0964680:CDS
CGATTTAGTCCCGTCTGGTG+TGG 0.555780 6_3:+91524022 Msa0964680:CDS
GAACCTCATGAAATCTGCAA+TGG 0.556856 6_3:-91519995 None:intergenic
GTTTCTGAAGACAGTAGCTA+GGG 0.558917 6_3:+91524100 Msa0964680:CDS
CATAAAAGCTTAGATCTCCA+TGG 0.559110 6_3:-91523108 None:intergenic
GTTGAACCGTTATCAGACAT+TGG 0.564903 6_3:+91524136 Msa0964680:CDS
CCCATTTCCATGCCCCAAAG+AGG 0.566399 6_3:-91524431 None:intergenic
GCCACATGCCGGATCTCGGA+AGG 0.567733 6_3:+91523982 Msa0964680:CDS
ACAAAATACGGCAGATGTGG+AGG 0.568405 6_3:+91523857 Msa0964680:CDS
TTCCGGAAGATCTTGATCCA+TGG 0.569292 6_3:+91523091 Msa0964680:CDS
GGATCTCGGAAGGAGATTGA+GGG 0.569864 6_3:+91523992 Msa0964680:CDS
GCAAAGCCAATGTCTGATAA+CGG 0.573019 6_3:-91524142 None:intergenic
CGAGAACCTCAGAAAAGCAA+TGG 0.576410 6_3:+91523920 Msa0964680:CDS
AGGACTCAAGCTCCTTCTGG+AGG 0.576534 6_3:-91522653 None:intergenic
AGGGTGGAATTTGAAAAGGG+TGG 0.581692 6_3:-91519898 None:intergenic
AATGAAGATGATGATGATGA+AGG 0.589533 6_3:-91519814 None:intergenic
GACACAAAATACGGCAGATG+TGG 0.592912 6_3:+91523854 Msa0964680:CDS
CTGAAATAGAAGCATTGTCA+AGG 0.597814 6_3:+91523220 Msa0964680:CDS
ATTCCATTGCAGATTTCATG+AGG 0.598572 6_3:+91519992 Msa0964680:CDS
AATGTCTGATAACGGTTCAA+CGG 0.600103 6_3:-91524134 None:intergenic
TTATCCACTCCACACCAGAC+GGG 0.604590 6_3:-91524031 None:intergenic
CAAAACCTGGAGTAATTGGA+AGG 0.605651 6_3:-91522895 None:intergenic
TAGTCCCGTCTGGTGTGGAG+TGG 0.608324 6_3:+91524027 Msa0964680:CDS
CAGATGTTAGTCTCTTTGCA+AGG 0.609726 6_3:-91523272 None:intergenic
TCCTTCCGAGATCCGGCATG+TGG 0.610617 6_3:-91523983 None:intergenic
CCTCAGAAAAGCAATGGACA+AGG 0.611848 6_3:+91523926 Msa0964680:CDS
GTGTGGAGTGGATAACAGCT+TGG 0.612779 6_3:+91524039 Msa0964680:CDS
TTAAAAGGATCACAAACTAG+AGG 0.613345 6_3:+91522753 Msa0964680:CDS
GGAGCTATTCTTCGGTACCA+CGG 0.617266 6_3:+91524205 Msa0964680:CDS
TATGACTCTTAGATCTACAA+AGG 0.619536 6_3:+91523050 Msa0964680:CDS
TGGATGCATCCAAAGACAGA+TGG 0.619679 6_3:+91522788 Msa0964680:CDS
AAAGGCTTCAAAAGAGACCA+AGG 0.623114 6_3:-91520084 None:intergenic
TAAGATTGCCATACTTTACG+GGG 0.624114 6_3:+91523956 Msa0964680:CDS
GTTATCCACTCCACACCAGA+CGG 0.632206 6_3:-91524032 None:intergenic
GGACTCAAGCTCCTTCTGGA+GGG 0.634976 6_3:-91522652 None:intergenic
AACATACCGAAGAATTTCTG+TGG 0.646117 6_3:-91524249 None:intergenic
GGAAGCGTTTGTGCAAATGT+GGG 0.646979 6_3:+91523177 Msa0964680:CDS
CTCAGAAAAGCAATGGACAA+GGG 0.666275 6_3:+91523927 Msa0964680:CDS
TCTCGGAAGGAGATTGAGGG+AGG 0.670087 6_3:+91523995 Msa0964680:CDS
CAGTAGCTAGGGCTTCAGGT+TGG 0.687504 6_3:+91524111 Msa0964680:CDS
TTCATAAAGGACACAATCGT+AGG 0.698872 6_3:-91522673 None:intergenic
AAGATTGCCATACTTTACGG+GGG 0.703694 6_3:+91523957 Msa0964680:CDS
ATCAGAGACCCAATTCACCG+TGG 0.790349 6_3:-91524222 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTAGAAATTTTATGAAAAT+TGG + chr6_3:91521160-91521179 Msa0964680:intron 10.0%
!!! TTATGTTCAAATTTTTATTT+AGG + chr6_3:91521713-91521732 Msa0964680:intron 10.0%
!! TTATTATGAACTAAATATTT+CGG - chr6_3:91521838-91521857 None:intergenic 10.0%
!!! ATATTTAGTTCATAATAAAA+TGG + chr6_3:91521840-91521859 Msa0964680:intron 10.0%
!! TAAACATTTATGTAAGTATT+TGG - chr6_3:91521237-91521256 None:intergenic 15.0%
!! AATTATTACCATATGATTTA+CGG + chr6_3:91524539-91524558 Msa0964680:three_prime_UTR 15.0%
!!! AAAACAAGTTTTGATTTTGA+GGG - chr6_3:91519920-91519939 None:intergenic 20.0%
!!! TTTCTTGTTTTTTTCTCAAT+TGG + chr6_3:91520134-91520153 Msa0964680:intron 20.0%
!!! TTCTTGTTTTTTTCTCAATT+GGG + chr6_3:91520135-91520154 Msa0964680:intron 20.0%
!! TTACAATCAAAGTTAAAATG+AGG + chr6_3:91521093-91521112 Msa0964680:intron 20.0%
!! GAAAGATTATGAAGAATTAT+GGG + chr6_3:91521514-91521533 Msa0964680:intron 20.0%
!!! ATAGTTTTAGATATTTATGC+AGG + chr6_3:91521617-91521636 Msa0964680:intron 20.0%
!! TGTACATCTATTGATATTAT+TGG + chr6_3:91521745-91521764 Msa0964680:intron 20.0%
!! AAAAGTTAATATACTGCTTT+GGG - chr6_3:91522591-91522610 None:intergenic 20.0%
!! TAAAAGTTAATATACTGCTT+TGG - chr6_3:91522592-91522611 None:intergenic 20.0%
!!! AAGTTTATTTTCTTTTGCAA+AGG + chr6_3:91523026-91523045 Msa0964680:CDS 20.0%
!! TTAAAAGATGATATGATCAT+TGG + chr6_3:91524277-91524296 Msa0964680:exon 20.0%
! ATCATAGTACAACACAAAAA+TGG + chr6_3:91519762-91519781 Msa0964680:exon 25.0%
!!! CAAAACAAGTTTTGATTTTG+AGG - chr6_3:91519921-91519940 None:intergenic 25.0%
! TTTAAACCAACCTGAAAAAA+AGG - chr6_3:91520105-91520124 None:intergenic 25.0%
!!! ATGTTATTTGTTGTTGTTGT+AGG + chr6_3:91520192-91520211 Msa0964680:intron 25.0%
!!! TTGTCATTTTTTTTCCCTTT+TGG + chr6_3:91520268-91520287 Msa0964680:intron 25.0%
!!! TTTTTTTCCCTTTTGGAATT+TGG + chr6_3:91520275-91520294 Msa0964680:intron 25.0%
! AAAACTACCAAATTCCAAAA+GGG - chr6_3:91520285-91520304 None:intergenic 25.0%
! TAAAACTACCAAATTCCAAA+AGG - chr6_3:91520286-91520305 None:intergenic 25.0%
!!! GTTTTAGCTTAATACCTTTT+TGG + chr6_3:91520300-91520319 Msa0964680:intron 25.0%
!! CTTAAGTTGTTTATCCAAAA+AGG - chr6_3:91520317-91520336 None:intergenic 25.0%
! TCTGTTTCCTTATTAGTTAT+AGG + chr6_3:91520390-91520409 Msa0964680:intron 25.0%
! TATTTATATGTTGTTGACCA+TGG + chr6_3:91520788-91520807 Msa0964680:intron 25.0%
! AAATCAATCAGCGAAAAAAA+GGG - chr6_3:91520868-91520887 None:intergenic 25.0%
! AAAATCAATCAGCGAAAAAA+AGG - chr6_3:91520869-91520888 None:intergenic 25.0%
!!! TTTTTTCGCTGATTGATTTT+TGG + chr6_3:91520869-91520888 Msa0964680:intron 25.0%
! TTATCAGTAGTGTTAGTATT+GGG + chr6_3:91521001-91521020 Msa0964680:intron 25.0%
! GGAAAGATTATGAAGAATTA+TGG + chr6_3:91521513-91521532 Msa0964680:intron 25.0%
!!! TTGATATTATTGGTGATGAT+CGG + chr6_3:91521755-91521774 Msa0964680:intron 25.0%
! AATAATATTAGCTGTACCTT+TGG + chr6_3:91521970-91521989 Msa0964680:intron 25.0%
! GATAAATATGATTCTCACAT+CGG + chr6_3:91522112-91522131 Msa0964680:intron 25.0%
! AAAGTTAATATACTGCTTTG+GGG - chr6_3:91522590-91522609 None:intergenic 25.0%
!!! TTAACCTTTTTTTAGCCATA+GGG - chr6_3:91522737-91522756 None:intergenic 25.0%
!!! TTTAACCTTTTTTTAGCCAT+AGG - chr6_3:91522738-91522757 None:intergenic 25.0%
! ATGGCTAAAAAAAGGTTAAA+AGG + chr6_3:91522738-91522757 Msa0964680:CDS 25.0%
!!! ACTAGAGGTTTTAACATTAT+TGG + chr6_3:91522768-91522787 Msa0964680:CDS 25.0%
! AATAAGATTGCCATACTTTA+CGG + chr6_3:91523954-91523973 Msa0964680:CDS 25.0%
!! CTCTTAAAACTTTGAGAAAT+GGG - chr6_3:91524408-91524427 None:intergenic 25.0%
! ATGCATGTAATCATAAGAAA+TGG + chr6_3:91524457-91524476 Msa0964680:three_prime_UTR 25.0%
! AATGAAGATGATGATGATGA+AGG - chr6_3:91519817-91519836 None:intergenic 30.0%
AAGAAAAGAAGGAAAAGCTT+TGG - chr6_3:91519863-91519882 None:intergenic 30.0%
ATTTCATGAGGTTCAAGAAA+GGG + chr6_3:91520004-91520023 Msa0964680:CDS 30.0%
GATATAAGAAGAAGTTTCCT+TGG + chr6_3:91520067-91520086 Msa0964680:CDS 30.0%
!!! TCTTTTGAAGCCTTTTTTTC+AGG + chr6_3:91520092-91520111 Msa0964680:CDS 30.0%
GAAACAGCCTATAACTAATA+AGG - chr6_3:91520400-91520419 None:intergenic 30.0%
AGACAATACATACTCTTCAT+CGG - chr6_3:91520839-91520858 None:intergenic 30.0%
!! TAGTTTTCAAGAGCAACTTA+AGG + chr6_3:91520898-91520917 Msa0964680:intron 30.0%
CTTATCAGTAGTGTTAGTAT+TGG + chr6_3:91521000-91521019 Msa0964680:intron 30.0%
TATCAGTAGTGTTAGTATTG+GGG + chr6_3:91521002-91521021 Msa0964680:intron 30.0%
ATCCAACAAAAGAAATGGAT+AGG - chr6_3:91521385-91521404 None:intergenic 30.0%
! ATCCATTTCTTTTGTTGGAT+AGG + chr6_3:91521385-91521404 Msa0964680:intron 30.0%
ATTATCATCCTGACATTCAA+CGG + chr6_3:91521872-91521891 Msa0964680:intron 30.0%
! ATTTTGTGAAGTCACGAATA+TGG + chr6_3:91522050-91522069 Msa0964680:intron 30.0%
!! TCACCTAATTGACTACTTTT+GGG + chr6_3:91522176-91522195 Msa0964680:intron 30.0%
TATCCCAAAAGTAGTCAATT+AGG - chr6_3:91522182-91522201 None:intergenic 30.0%
!!! TAATTGACTACTTTTGGGAT+AGG + chr6_3:91522181-91522200 Msa0964680:intron 30.0%
! CTTAAGAGCATAAATCCAAA+GGG - chr6_3:91522211-91522230 None:intergenic 30.0%
! TCTTAAGAGCATAAATCCAA+AGG - chr6_3:91522212-91522231 None:intergenic 30.0%
ACTTCACTTAACTTCTTCAA+TGG - chr6_3:91522315-91522334 None:intergenic 30.0%
AATACCTGCTCATCAAAATT+AGG - chr6_3:91522626-91522645 None:intergenic 30.0%
TTAAAAGGATCACAAACTAG+AGG + chr6_3:91522753-91522772 Msa0964680:CDS 30.0%
GGTAATTGAGACAATCTAAT+TGG - chr6_3:91522836-91522855 None:intergenic 30.0%
TCAATTACCAGTCTGAAAAT+TGG + chr6_3:91522847-91522866 Msa0964680:CDS 30.0%
AAAATTAGCAACTCAAAACC+TGG - chr6_3:91522911-91522930 None:intergenic 30.0%
TATGACTCTTAGATCTACAA+AGG + chr6_3:91523050-91523069 Msa0964680:CDS 30.0%
! ATGGAGATCTAAGCTTTTAT+GGG + chr6_3:91523110-91523129 Msa0964680:CDS 30.0%
! TTGTCATTTAAGTGCATGTT+TGG + chr6_3:91523389-91523408 Msa0964680:intron 30.0%
! CTACTGGTTGAAATTCATAT+AGG + chr6_3:91523587-91523606 Msa0964680:intron 30.0%
!!! AGATCCCATTGTTTTAGAAA+CGG - chr6_3:91523634-91523653 None:intergenic 30.0%
GTAAAGCTTGACACAAAATA+CGG + chr6_3:91523845-91523864 Msa0964680:intron 30.0%
GAGGAGAAATCTGTTATAAT+TGG + chr6_3:91523876-91523895 Msa0964680:CDS 30.0%
ATAAGATTGCCATACTTTAC+GGG + chr6_3:91523955-91523974 Msa0964680:CDS 30.0%
! ATCAAGTTTCCTTTTCCTTA+TGG - chr6_3:91524066-91524085 None:intergenic 30.0%
ATGTTACCACAGAAATTCTT+CGG + chr6_3:91524243-91524262 Msa0964680:CDS 30.0%
! GCTCTTAAAACTTTGAGAAA+TGG - chr6_3:91524409-91524428 None:intergenic 30.0%
! ATGTTGTTGGATTTTGTTGC+AGG - chr6_3:91519744-91519763 None:intergenic 35.0%
GTGTTGTACTATGATGTTGT+TGG - chr6_3:91519757-91519776 None:intergenic 35.0%
! GCTTTTCCTTCTTTTCTTGT+TGG + chr6_3:91519865-91519884 Msa0964680:CDS 35.0%
GGAAAACCAACAAGAAAAGA+AGG - chr6_3:91519874-91519893 None:intergenic 35.0%
! GAATTTGAAAAGGGTGGTTT+TGG - chr6_3:91519895-91519914 None:intergenic 35.0%
TTGAGGGTGGAATTTGAAAA+GGG - chr6_3:91519904-91519923 None:intergenic 35.0%
TTTGAGGGTGGAATTTGAAA+AGG - chr6_3:91519905-91519924 None:intergenic 35.0%
!!! ACAAGTTTTGATTTTGAGGG+TGG - chr6_3:91519917-91519936 None:intergenic 35.0%
!! TCATCGACTCAACAAGAAAA+TGG + chr6_3:91519943-91519962 Msa0964680:CDS 35.0%
!! CATCGACTCAACAAGAAAAT+GGG + chr6_3:91519944-91519963 Msa0964680:CDS 35.0%
TTGCTTTGTAGAAACTGTTC+TGG - chr6_3:91519973-91519992 None:intergenic 35.0%
ATTCCATTGCAGATTTCATG+AGG + chr6_3:91519992-91520011 Msa0964680:CDS 35.0%
GATTTCATGAGGTTCAAGAA+AGG + chr6_3:91520003-91520022 Msa0964680:CDS 35.0%
!!! TTGAAGCCTTTTTTTCAGGT+TGG + chr6_3:91520096-91520115 Msa0964680:intron 35.0%
TATGGAAATAAGCAGAAAGC+AGG + chr6_3:91520441-91520460 Msa0964680:intron 35.0%
!! AGACTGTTCAAGAGAGTATT+TGG - chr6_3:91520491-91520510 None:intergenic 35.0%
TATATGTTGTTGACCATGGA+TGG + chr6_3:91520792-91520811 Msa0964680:intron 35.0%
GATGGTAGCTGTAACATAAT+TGG + chr6_3:91520810-91520829 Msa0964680:intron 35.0%
!! CGCTGATTGATTTTTGGATT+TGG + chr6_3:91520875-91520894 Msa0964680:intron 35.0%
! AGAGCAACTTAAGGTTTGTT+TGG + chr6_3:91520907-91520926 Msa0964680:intron 35.0%
! ATCAGTAGTGTTAGTATTGG+GGG + chr6_3:91521003-91521022 Msa0964680:intron 35.0%
! AGCCTATCCATTTCTTTTGT+TGG + chr6_3:91521380-91521399 Msa0964680:intron 35.0%
AGCCTATCCAACAAAAGAAA+TGG - chr6_3:91521390-91521409 None:intergenic 35.0%
AGTCTTAAATCCAAACACTC+TGG + chr6_3:91521424-91521443 Msa0964680:intron 35.0%
AAGAAATTTGGGTATGGATG+AGG + chr6_3:91521462-91521481 Msa0964680:intron 35.0%
AGAAATTTGGGTATGGATGA+GGG + chr6_3:91521463-91521482 Msa0964680:intron 35.0%
!!! ACAATTCACAGGGTTTTTTG+AGG + chr6_3:91521492-91521511 Msa0964680:intron 35.0%
AAATCAATCATGAGAACAGG+TGG + chr6_3:91521537-91521556 Msa0964680:intron 35.0%
CTGAGATGAACAAGTAGAAT+TGG + chr6_3:91521582-91521601 Msa0964680:intron 35.0%
AACCTTATCCATAACCACAT+GGG - chr6_3:91521666-91521685 None:intergenic 35.0%
TAACCTTATCCATAACCACA+TGG - chr6_3:91521667-91521686 None:intergenic 35.0%
TGTGGTTATGGATAAGGTTA+AGG + chr6_3:91521667-91521686 Msa0964680:intron 35.0%
!! ATATTATTGGTGATGATCGG+AGG + chr6_3:91521758-91521777 Msa0964680:intron 35.0%
ACTACATCTCAAACAAACTG+CGG + chr6_3:91522006-91522025 Msa0964680:intron 35.0%
AATTAGGTGAGAAAATCCCT+AGG - chr6_3:91522166-91522185 None:intergenic 35.0%
! CTCACCTAATTGACTACTTT+TGG + chr6_3:91522175-91522194 Msa0964680:intron 35.0%
CATTGAGACTAATGACTTCT+CGG + chr6_3:91522242-91522261 Msa0964680:intron 35.0%
CACTTAACTTCTTCAATGGT+CGG - chr6_3:91522311-91522330 None:intergenic 35.0%
GAAGAAGTTAAGTGAAGTCA+CGG + chr6_3:91522317-91522336 Msa0964680:intron 35.0%
ACGTTTAAGTCTCACTTCTT+AGG - chr6_3:91522430-91522449 None:intergenic 35.0%
AAGTGAGACTTAAACGTCAA+AGG + chr6_3:91522433-91522452 Msa0964680:intron 35.0%
AGTGAGACTTAAACGTCAAA+GGG + chr6_3:91522434-91522453 Msa0964680:intron 35.0%
TCACATAACACTAGTCCATT+AGG - chr6_3:91522468-91522487 None:intergenic 35.0%
GTTATGAGCATAAGCCTAAA+GGG - chr6_3:91522499-91522518 None:intergenic 35.0%
AGTTATGAGCATAAGCCTAA+AGG - chr6_3:91522500-91522519 None:intergenic 35.0%
!! TGATCCTAATTTTGATGAGC+AGG + chr6_3:91522619-91522638 Msa0964680:intron 35.0%
! TTTGATGAGCAGGTATTTTC+TGG + chr6_3:91522629-91522648 Msa0964680:intron 35.0%
TTCATAAAGGACACAATCGT+AGG - chr6_3:91522676-91522695 None:intergenic 35.0%
CGATTGTGTCCTTTATGAAA+TGG + chr6_3:91522677-91522696 Msa0964680:CDS 35.0%
TGCTAGCTACCATTTCATAA+AGG - chr6_3:91522689-91522708 None:intergenic 35.0%
TTATGAAATGGTAGCTAGCA+AGG + chr6_3:91522689-91522708 Msa0964680:CDS 35.0%
AGAGAATATGAGAAACCCTA+TGG + chr6_3:91522719-91522738 Msa0964680:CDS 35.0%
GAAACCCTATGGCTAAAAAA+AGG + chr6_3:91522730-91522749 Msa0964680:CDS 35.0%
AACTCAAAACCTGGAGTAAT+TGG - chr6_3:91522902-91522921 None:intergenic 35.0%
!! CTTTTGTTTCAGCAAGCAAA+AGG + chr6_3:91523000-91523019 Msa0964680:intron 35.0%
CATAAAAGCTTAGATCTCCA+TGG - chr6_3:91523111-91523130 None:intergenic 35.0%
! CATGGAGATCTAAGCTTTTA+TGG + chr6_3:91523109-91523128 Msa0964680:CDS 35.0%
ATTTCAGGATATTCTGATGC+TGG - chr6_3:91523207-91523226 None:intergenic 35.0%
CTTGACAATGCTTCTATTTC+AGG - chr6_3:91523222-91523241 None:intergenic 35.0%
!! CTGAAATAGAAGCATTGTCA+AGG + chr6_3:91523220-91523239 Msa0964680:CDS 35.0%
AGATCTTCCCAAAATCATTG+TGG - chr6_3:91523447-91523466 None:intergenic 35.0%
TGAGTTTGACGAAATCATGT+CGG - chr6_3:91523487-91523506 None:intergenic 35.0%
!! TTCAACCAAGTTTTATGTCC+TGG - chr6_3:91523733-91523752 None:intergenic 35.0%
ATGCAATCTCTTGAATTGCA+CGG - chr6_3:91523757-91523776 None:intergenic 35.0%
TAAGATTGCCATACTTTACG+GGG + chr6_3:91523956-91523975 Msa0964680:CDS 35.0%
!! AATGTCTGATAACGGTTCAA+CGG - chr6_3:91524137-91524156 None:intergenic 35.0%
AACATACCGAAGAATTTCTG+TGG - chr6_3:91524252-91524271 None:intergenic 35.0%
ACAGAAATTCTTCGGTATGT+TGG + chr6_3:91524251-91524270 Msa0964680:CDS 35.0%
!!! AGTTTTAAGAGCTACCTCTT+TGG + chr6_3:91524417-91524436 Msa0964680:three_prime_UTR 35.0%
!!! GTTTTAAGAGCTACCTCTTT+GGG + chr6_3:91524418-91524437 Msa0964680:three_prime_UTR 35.0%
!! TTTTAAGAGCTACCTCTTTG+GGG + chr6_3:91524419-91524438 Msa0964680:three_prime_UTR 35.0%
ACTCAAGTGTTCTACATATG+TGG + chr6_3:91524483-91524502 Msa0964680:three_prime_UTR 35.0%
CTTGTGAACCGTAAATCATA+TGG - chr6_3:91524550-91524569 None:intergenic 35.0%
!! GGAAAAGCTTTGGAAGTTGA+TGG - chr6_3:91519853-91519872 None:intergenic 40.0%
GAACCTCATGAAATCTGCAA+TGG - chr6_3:91519998-91520017 None:intergenic 40.0%
AGGTTCAAGAAAGGGATTGA+TGG + chr6_3:91520012-91520031 Msa0964680:CDS 40.0%
! AAAGGGATTGATGGTTCTAC+TGG + chr6_3:91520021-91520040 Msa0964680:CDS 40.0%
AAAGGCTTCAAAAGAGACCA+AGG - chr6_3:91520087-91520106 None:intergenic 40.0%
! GCTGTTTCCATAAGCTATCA+TGG + chr6_3:91520412-91520431 Msa0964680:intron 40.0%
AGTCTCTCCATGATAGCTTA+TGG - chr6_3:91520422-91520441 None:intergenic 40.0%
AAGCTATCATGGAGAGACTA+TGG + chr6_3:91520423-91520442 Msa0964680:intron 40.0%
ACAGCAACTTAGAGCATGTT+TGG + chr6_3:91520572-91520591 Msa0964680:intron 40.0%
TATGTTACAGCTACCATCCA+TGG - chr6_3:91520808-91520827 None:intergenic 40.0%
AAACACTCTCACTGAGTGTT+TGG + chr6_3:91521323-91521342 Msa0964680:intron 40.0%
GTTAGGCGGCAAAGAAATTT+GGG + chr6_3:91521451-91521470 Msa0964680:intron 40.0%
GAAATTTGGGTATGGATGAG+GGG + chr6_3:91521464-91521483 Msa0964680:intron 40.0%
GGGAAATCAATCATGAGAAC+AGG + chr6_3:91521534-91521553 Msa0964680:intron 40.0%
AATCATGAGAACAGGTGGAT+AGG + chr6_3:91521542-91521561 Msa0964680:intron 40.0%
TGATTAGCACTCAGTGAGAT+TGG - chr6_3:91521693-91521712 None:intergenic 40.0%
TAGGCTTATAAGCCTCACTT+AGG - chr6_3:91522147-91522166 None:intergenic 40.0%
TAAGTGAGGCTTATAAGCCT+AGG + chr6_3:91522146-91522165 Msa0964680:intron 40.0%
AAGTGAGGCTTATAAGCCTA+GGG + chr6_3:91522147-91522166 Msa0964680:intron 40.0%
! CGAGAAGTCATTAGTCTCAA+TGG - chr6_3:91522244-91522263 None:intergenic 40.0%
CATTGAGTGAAAGTTGTCGT+AGG + chr6_3:91522350-91522369 Msa0964680:intron 40.0%
CAAAGGGTTCTTTCACCTAA+TGG + chr6_3:91522450-91522469 Msa0964680:intron 40.0%
ATGTGATGAGCTTTCCCTTT+AGG + chr6_3:91522482-91522501 Msa0964680:intron 40.0%
GAATTTGAGCCATCTGTCTT+TGG - chr6_3:91522800-91522819 None:intergenic 40.0%
! CATGTTGCCAATTTTCAGAC+TGG - chr6_3:91522857-91522876 None:intergenic 40.0%
CAAAACCTGGAGTAATTGGA+AGG - chr6_3:91522898-91522917 None:intergenic 40.0%
AATGTTGCAGCCTTCAATTC+CGG + chr6_3:91523074-91523093 Msa0964680:CDS 40.0%
TCAAGATCTTCCGGAATTGA+AGG - chr6_3:91523087-91523106 None:intergenic 40.0%
ATGAGAAAAAGGCCAACAAG+CGG - chr6_3:91523156-91523175 None:intergenic 40.0%
!!! CTTGTTGGCCTTTTTCTCAT+CGG + chr6_3:91523156-91523175 Msa0964680:CDS 40.0%
AAACGCTTCCGATGAGAAAA+AGG - chr6_3:91523167-91523186 None:intergenic 40.0%
TGATGTAAGTGCAGCAATGA+AGG + chr6_3:91523245-91523264 Msa0964680:CDS 40.0%
! CAGATGTTAGTCTCTTTGCA+AGG - chr6_3:91523275-91523294 None:intergenic 40.0%
AGATGCACACAGAAATGAGA+GGG - chr6_3:91523305-91523324 None:intergenic 40.0%
ATAGAAGCTCTTGTTCCTGT+AGG + chr6_3:91523338-91523357 Msa0964680:intron 40.0%
TAGAAGCTCTTGTTCCTGTA+GGG + chr6_3:91523339-91523358 Msa0964680:intron 40.0%
TAAGTGCATGTTTGGATCCA+TGG + chr6_3:91523397-91523416 Msa0964680:intron 40.0%
! ACAGTGTGCCACAATGATTT+TGG + chr6_3:91523436-91523455 Msa0964680:intron 40.0%
! CAGTGTGCCACAATGATTTT+GGG + chr6_3:91523437-91523456 Msa0964680:intron 40.0%
GACAACATAGTCTCTTCTAC+TGG + chr6_3:91523571-91523590 Msa0964680:intron 40.0%
! ATAGGTCCCGCATAATTTTG+TGG + chr6_3:91523605-91523624 Msa0964680:intron 40.0%
! TAGGTCCCGCATAATTTTGT+GGG + chr6_3:91523606-91523625 Msa0964680:intron 40.0%
!! GGGTCCGTTTCTAAAACAAT+GGG + chr6_3:91523627-91523646 Msa0964680:intron 40.0%
!!! TCCTTTTGAAAGTGTTGTCC+AGG + chr6_3:91523712-91523731 Msa0964680:intron 40.0%
TCCTGGACAACACTTTCAAA+AGG - chr6_3:91523716-91523735 None:intergenic 40.0%
GTTGTCCAGGACATAAAACT+TGG + chr6_3:91523725-91523744 Msa0964680:intron 40.0%
CTCAGAAAAGCAATGGACAA+GGG + chr6_3:91523927-91523946 Msa0964680:CDS 40.0%
AAGATTGCCATACTTTACGG+GGG + chr6_3:91523957-91523976 Msa0964680:CDS 40.0%
CTAGCTACTGTCTTCAGAAA+CGG - chr6_3:91524101-91524120 None:intergenic 40.0%
! GTTTCTGAAGACAGTAGCTA+GGG + chr6_3:91524100-91524119 Msa0964680:CDS 40.0%
GTTGAACCGTTATCAGACAT+TGG + chr6_3:91524136-91524155 Msa0964680:CDS 40.0%
GCAAAGCCAATGTCTGATAA+CGG - chr6_3:91524145-91524164 None:intergenic 40.0%
! GCTCATCTTTTCGTCAATCT+TGG + chr6_3:91524163-91524182 Msa0964680:CDS 40.0%
! CATCTTTTCGTCAATCTTGG+CGG + chr6_3:91524166-91524185 Msa0964680:CDS 40.0%
!!! TGGTTTTGGGAGCTATTCTT+CGG + chr6_3:91524197-91524216 Msa0964680:CDS 40.0%
AGGGTGGAATTTGAAAAGGG+TGG - chr6_3:91519901-91519920 None:intergenic 45.0%
!! GCTTCTCTGAAGCTAGTCAA+TGG - chr6_3:91520687-91520706 None:intergenic 45.0%
CGTTAGGCGGCAAAGAAATT+TGG + chr6_3:91521450-91521469 Msa0964680:intron 45.0%
GCGGCAAAGAAATTTGGGTA+TGG + chr6_3:91521456-91521475 Msa0964680:intron 45.0%
AGGGGCTGATACAATTCACA+GGG + chr6_3:91521482-91521501 Msa0964680:intron 45.0%
AGCCCATGTGGTTATGGATA+AGG + chr6_3:91521661-91521680 Msa0964680:intron 45.0%
TATTAGCTGTACCTTTGGCG+TGG + chr6_3:91521975-91521994 Msa0964680:intron 45.0%
! TTTGGGATAGGTTCTCCCTT+TGG + chr6_3:91522193-91522212 Msa0964680:intron 45.0%
GAGACTAATGACTTCTCGGT+CGG + chr6_3:91522246-91522265 Msa0964680:intron 45.0%
TAATGACTTCTCGGTCGGAA+AGG + chr6_3:91522251-91522270 Msa0964680:intron 45.0%
AATGACTTCTCGGTCGGAAA+GGG + chr6_3:91522252-91522271 Msa0964680:intron 45.0%
! TACTTGCGAAGGGTTCTGAT+CGG + chr6_3:91522276-91522295 Msa0964680:intron 45.0%
TGGATGCATCCAAAGACAGA+TGG + chr6_3:91522788-91522807 Msa0964680:CDS 45.0%
GACAGATGGCTCAAATTCTC+AGG + chr6_3:91522802-91522821 Msa0964680:CDS 45.0%
TGAGACCTTCCAATTACTCC+AGG + chr6_3:91522890-91522909 Msa0964680:CDS 45.0%
TTCCGGAAGATCTTGATCCA+TGG + chr6_3:91523091-91523110 Msa0964680:CDS 45.0%
CTCCATGGATCAAGATCTTC+CGG - chr6_3:91523096-91523115 None:intergenic 45.0%
!! GGAAGCGTTTGTGCAAATGT+GGG + chr6_3:91523177-91523196 Msa0964680:CDS 45.0%
GAGATGCACACAGAAATGAG+AGG - chr6_3:91523306-91523325 None:intergenic 45.0%
GTTTGGATCCATGGTGAGTT+TGG + chr6_3:91523406-91523425 Msa0964680:intron 45.0%
TGATTCAGCCAAACTCACCA+TGG - chr6_3:91523417-91523436 None:intergenic 45.0%
! AGGTCCCGCATAATTTTGTG+GGG + chr6_3:91523607-91523626 Msa0964680:intron 45.0%
ACGGACCCCACAAAATTATG+CGG - chr6_3:91523615-91523634 None:intergenic 45.0%
!! GGGGTCCGTTTCTAAAACAA+TGG + chr6_3:91523626-91523645 Msa0964680:intron 45.0%
GACACAAAATACGGCAGATG+TGG + chr6_3:91523854-91523873 Msa0964680:CDS 45.0%
ACAAAATACGGCAGATGTGG+AGG + chr6_3:91523857-91523876 Msa0964680:CDS 45.0%
CGAGAACCTCAGAAAAGCAA+TGG + chr6_3:91523920-91523939 Msa0964680:CDS 45.0%
!! CCTTGTCCATTGCTTTTCTG+AGG - chr6_3:91523929-91523948 None:intergenic 45.0%
CCTCAGAAAAGCAATGGACA+AGG + chr6_3:91523926-91523945 Msa0964680:CDS 45.0%
GGATAACAGCTTGGTCCATA+AGG + chr6_3:91524048-91524067 Msa0964680:CDS 45.0%
CAGCTTGGTCCATAAGGAAA+AGG + chr6_3:91524054-91524073 Msa0964680:CDS 45.0%
! CGTTTCTGAAGACAGTAGCT+AGG + chr6_3:91524099-91524118 Msa0964680:CDS 45.0%
!! GCACTTCTGAAGCTCTGTGA+AGG + chr6_3:91520626-91520645 Msa0964680:intron 50.0%
!! GTGTTAGTATTGGGGGCACT+TGG + chr6_3:91521010-91521029 Msa0964680:intron 50.0%
! CCTAACGAGTCCAGAGTGTT+TGG - chr6_3:91521437-91521456 None:intergenic 50.0%
CCAAACACTCTGGACTCGTT+AGG + chr6_3:91521434-91521453 Msa0964680:intron 50.0%
AACACTCTGGACTCGTTAGG+CGG + chr6_3:91521437-91521456 Msa0964680:intron 50.0%
GAGGGGCTGATACAATTCAC+AGG + chr6_3:91521481-91521500 Msa0964680:intron 50.0%
ATGAGAACAGGTGGATAGGC+AGG + chr6_3:91521546-91521565 Msa0964680:intron 50.0%
ATGCAGGTCTAGCAAACCAC+TGG + chr6_3:91521633-91521652 Msa0964680:intron 50.0%
GTTTGCAGCCCATGTGGTTA+TGG + chr6_3:91521655-91521674 Msa0964680:intron 50.0%
AGTTCAGCAATCCACGCCAA+AGG - chr6_3:91521989-91522008 None:intergenic 50.0%
CGGAAAGTCTCACCTAAGTG+AGG + chr6_3:91522132-91522151 Msa0964680:intron 50.0%
!! AGGCATCGATCCTCGAATGA+TGG + chr6_3:91522370-91522389 Msa0964680:intron 50.0%
! ATCCTCGAATGATGGTGCGT+TGG + chr6_3:91522378-91522397 Msa0964680:intron 50.0%
TTGGTGTGAGTCACACACTG+TGG + chr6_3:91522397-91522416 Msa0964680:intron 50.0%
CACAAGTGCTCGTTGATGCA+TGG + chr6_3:91522531-91522550 Msa0964680:intron 50.0%
!! GTATTTTCTGGCCCTCCAGA+AGG + chr6_3:91522641-91522660 Msa0964680:CDS 50.0%
! GTACTTCCTATGCCGCTTGT+TGG + chr6_3:91523141-91523160 Msa0964680:CDS 50.0%
AAAAGGCCAACAAGCGGCAT+AGG - chr6_3:91523150-91523169 None:intergenic 50.0%
!! CGGAAGCGTTTGTGCAAATG+TGG + chr6_3:91523176-91523195 Msa0964680:CDS 50.0%
CTCGTAGCTCAAAACCCTAC+AGG - chr6_3:91523356-91523375 None:intergenic 50.0%
CGGACCCCACAAAATTATGC+GGG - chr6_3:91523614-91523633 None:intergenic 50.0%
ATTGCCATACTTTACGGGGG+TGG + chr6_3:91523960-91523979 Msa0964680:CDS 50.0%
CTCAATCTCCTTCCGAGATC+CGG - chr6_3:91523993-91524012 None:intergenic 50.0%
GGATCTCGGAAGGAGATTGA+GGG + chr6_3:91523992-91524011 Msa0964680:CDS 50.0%
GAGTTCGATTTAGTCCCGTC+TGG + chr6_3:91524017-91524036 Msa0964680:CDS 50.0%
TTATCCACTCCACACCAGAC+GGG - chr6_3:91524034-91524053 None:intergenic 50.0%
GTTATCCACTCCACACCAGA+CGG - chr6_3:91524035-91524054 None:intergenic 50.0%
GTGTGGAGTGGATAACAGCT+TGG + chr6_3:91524039-91524058 Msa0964680:CDS 50.0%
AAGACAGTAGCTAGGGCTTC+AGG + chr6_3:91524107-91524126 Msa0964680:CDS 50.0%
! CTTTTCGTCAATCTTGGCGG+TGG + chr6_3:91524169-91524188 Msa0964680:CDS 50.0%
GGAGCTATTCTTCGGTACCA+CGG + chr6_3:91524205-91524224 Msa0964680:CDS 50.0%
TCTTCGGTACCACGGTGAAT+TGG + chr6_3:91524213-91524232 Msa0964680:CDS 50.0%
CTTCGGTACCACGGTGAATT+GGG + chr6_3:91524214-91524233 Msa0964680:CDS 50.0%
ATCAGAGACCCAATTCACCG+TGG - chr6_3:91524225-91524244 None:intergenic 50.0%
!! ACCTCTTTGGGGCATGGAAA+TGG + chr6_3:91524430-91524449 Msa0964680:three_prime_UTR 50.0%
!! CCTCTTTGGGGCATGGAAAT+GGG + chr6_3:91524431-91524450 Msa0964680:three_prime_UTR 50.0%
ATCCTGACATTCAACGGCCG+CGG + chr6_3:91521878-91521897 Msa0964680:intron 55.0%
TCGGAAAGGGCTACTTGCGA+AGG + chr6_3:91522265-91522284 Msa0964680:intron 55.0%
CGGAAAGGGCTACTTGCGAA+GGG + chr6_3:91522266-91522285 Msa0964680:intron 55.0%
! TTGCGAAGGGTTCTGATCGG+TGG + chr6_3:91522279-91522298 Msa0964680:intron 55.0%
! GAAGGGTTCTGATCGGTGGA+GGG + chr6_3:91522283-91522302 Msa0964680:intron 55.0%
CACCAACGCACCATCATTCG+AGG - chr6_3:91522383-91522402 None:intergenic 55.0%
GGACTCAAGCTCCTTCTGGA+GGG - chr6_3:91522655-91522674 None:intergenic 55.0%
AGGACTCAAGCTCCTTCTGG+AGG - chr6_3:91522656-91522675 None:intergenic 55.0%
CGTAGGACTCAAGCTCCTTC+TGG - chr6_3:91522659-91522678 None:intergenic 55.0%
CGGATCTCGGAAGGAGATTG+AGG + chr6_3:91523991-91524010 Msa0964680:CDS 55.0%
TCTCGGAAGGAGATTGAGGG+AGG + chr6_3:91523995-91524014 Msa0964680:CDS 55.0%
CGATTTAGTCCCGTCTGGTG+TGG + chr6_3:91524022-91524041 Msa0964680:CDS 55.0%
CAGTAGCTAGGGCTTCAGGT+TGG + chr6_3:91524111-91524130 Msa0964680:CDS 55.0%
CAATCTTGGCGGTGGATCTG+TGG + chr6_3:91524177-91524196 Msa0964680:CDS 55.0%
! TGGCGGTGGATCTGTGGTTT+TGG + chr6_3:91524183-91524202 Msa0964680:CDS 55.0%
! GGCGGTGGATCTGTGGTTTT+GGG + chr6_3:91524184-91524203 Msa0964680:CDS 55.0%
!! AGAGCTACCTCTTTGGGGCA+TGG + chr6_3:91524424-91524443 Msa0964680:three_prime_UTR 55.0%
CCCATTTCCATGCCCCAAAG+AGG - chr6_3:91524434-91524453 None:intergenic 55.0%
! CCACATGGGCTGCAAACCAG+TGG - chr6_3:91521652-91521671 None:intergenic 60.0%
!! CCACTGGTTTGCAGCCCATG+TGG + chr6_3:91521649-91521668 Msa0964680:intron 60.0%
TCCTGACATTCAACGGCCGC+GGG + chr6_3:91521879-91521898 Msa0964680:intron 60.0%
! CGAAGGGTTCTGATCGGTGG+AGG + chr6_3:91522282-91522301 Msa0964680:intron 60.0%
GTGGCCACCCCCGTAAAGTA+TGG - chr6_3:91523967-91523986 None:intergenic 60.0%
TCCTTCCGAGATCCGGCATG+TGG - chr6_3:91523986-91524005 None:intergenic 60.0%
TAGTCCCGTCTGGTGTGGAG+TGG + chr6_3:91524027-91524046 Msa0964680:CDS 60.0%
CCTGACATTCAACGGCCGCG+GGG + chr6_3:91521880-91521899 Msa0964680:intron 65.0%
CTGACATTCAACGGCCGCGG+GGG + chr6_3:91521881-91521900 Msa0964680:intron 65.0%
TTACGGGGGTGGCCACATGC+CGG + chr6_3:91523971-91523990 Msa0964680:CDS 65.0%
GGTGGCCACATGCCGGATCT+CGG + chr6_3:91523978-91523997 Msa0964680:CDS 65.0%
GCCACATGCCGGATCTCGGA+AGG + chr6_3:91523982-91524001 Msa0964680:CDS 65.0%
CCCCGCGGCCGTTGAATGTC+AGG - chr6_3:91521883-91521902 None:intergenic 70.0%
ACATTCAACGGCCGCGGGGG+TGG + chr6_3:91521884-91521903 Msa0964680:intron 70.0%
CATTCAACGGCCGCGGGGGT+GGG + chr6_3:91521885-91521904 Msa0964680:intron 70.0%
ATTCAACGGCCGCGGGGGTG+GGG + chr6_3:91521886-91521905 Msa0964680:intron 70.0%
TTCAACGGCCGCGGGGGTGG+GGG + chr6_3:91521887-91521906 Msa0964680:intron 75.0%
! TCAACGGCCGCGGGGGTGGG+GGG + chr6_3:91521888-91521907 Msa0964680:intron 80.0%
! CTTCCCTCCCCCCACCCCCG+CGG - chr6_3:91521898-91521917 None:intergenic 80.0%
! ACGGCCGCGGGGGTGGGGGG+AGG + chr6_3:91521891-91521910 Msa0964680:intron 90.0%
! CGGCCGCGGGGGTGGGGGGA+GGG + chr6_3:91521892-91521911 Msa0964680:intron 90.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 91519720 91524571 91519720 ID=Msa0964680;Name=Msa0964680
chr6_3 mRNA 91519720 91524571 91519720 ID=Msa0964680-mRNA-1;Parent=Msa0964680;Name=Msa0964680-mRNA-1;_AED=0.02;_eAED=0.02;_QI=61|1|1|1|1|1|5|291|451
chr6_3 exon 91519720 91520113 91519720 ID=Msa0964680-mRNA-1:exon:16559;Parent=Msa0964680-mRNA-1
chr6_3 exon 91520214 91520251 91520214 ID=Msa0964680-mRNA-1:exon:16560;Parent=Msa0964680-mRNA-1
chr6_3 exon 91522641 91522911 91522641 ID=Msa0964680-mRNA-1:exon:16561;Parent=Msa0964680-mRNA-1
chr6_3 exon 91523012 91523295 91523012 ID=Msa0964680-mRNA-1:exon:16562;Parent=Msa0964680-mRNA-1
chr6_3 exon 91523851 91524571 91523851 ID=Msa0964680-mRNA-1:exon:16563;Parent=Msa0964680-mRNA-1
chr6_3 five_prime_UTR 91519720 91519780 91519720 ID=Msa0964680-mRNA-1:five_prime_utr;Parent=Msa0964680-mRNA-1
chr6_3 CDS 91519781 91520113 91519781 ID=Msa0964680-mRNA-1:cds;Parent=Msa0964680-mRNA-1
chr6_3 CDS 91520214 91520251 91520214 ID=Msa0964680-mRNA-1:cds;Parent=Msa0964680-mRNA-1
chr6_3 CDS 91522641 91522911 91522641 ID=Msa0964680-mRNA-1:cds;Parent=Msa0964680-mRNA-1
chr6_3 CDS 91523012 91523295 91523012 ID=Msa0964680-mRNA-1:cds;Parent=Msa0964680-mRNA-1
chr6_3 CDS 91523851 91524280 91523851 ID=Msa0964680-mRNA-1:cds;Parent=Msa0964680-mRNA-1
chr6_3 three_prime_UTR 91524281 91524571 91524281 ID=Msa0964680-mRNA-1:three_prime_utr;Parent=Msa0964680-mRNA-1
Gene Sequence

>Msa0964680

ATGGTGTTAACTTCAATTTCATCAATATCTTCACCTTCATCATCATCATCTTCATTCTTCTCTGATTCACCATCAACTTCCAAAGCTTTTCCTTCTTTTCTTGTTGGTTTTCCAAAACCACCCTTTTCAAATTCCACCCTCAAAATCAAAACTTGTTTTGCTTCATCGACTCAACAAGAAAATGGGTCACCAGAACAGTTTCTACAAAGCAATTCCATTGCAGATTTCATGAGGTTCAAGAAAGGGATTGATGGTTCTACTGGTTTGTTGCAGACTGCTGTTGTTAGATATAAGAAGAAGTTTCCTTGGTCTCTTTTGAAGCCTTTTTTTCAGGTTGATTTGATTTCAACAATTCACATAGCAGATGAAGAGTATTTTCTGGCCCTCCAGAAGGAGCTTGAGTCCTACGATTGTGTCCTTTATGAAATGGTAGCTAGCAAGGAAACTTTAGAGAATATGAGAAACCCTATGGCTAAAAAAAGGTTAAAAGGATCACAAACTAGAGGTTTTAACATTATTGGATGCATCCAAAGACAGATGGCTCAAATTCTCAGGCTTGATTTCCAATTAGATTGTCTCAATTACCAGTCTGAAAATTGGCAACATGCAGATCTTGATTATGAGACCTTCCAATTACTCCAGCAAGCAAAAGGTGAAAGTTTATTTTCTTTTGCAAAGGATATGACTCTTAGATCTACAAAGGCAATGTTGCAGCCTTCAATTCCGGAAGATCTTGATCCATGGAGATCTAAGCTTTTATGGGCTTCACGTGTACTTCCTATGCCGCTTGTTGGCCTTTTTCTCATCGGAAGCGTTTGTGCAAATGTGGGAAGTCCAGCATCAGAATATCCTGAAATAGAAGCATTGTCAAGGCTTGATGTAAGTGCAGCAATGAAGGTCTTCCTTGCAAAGAGACTAACATCTGACTTGACACAAAATACGGCAGATGTGGAGGAGAAATCTGTTATAATTGGTGAGAGAAATCGAGTTGCAATCGAGAACCTCAGAAAAGCAATGGACAAGGGACAAAATAAGATTGCCATACTTTACGGGGGTGGCCACATGCCGGATCTCGGAAGGAGATTGAGGGAGGAGTTCGATTTAGTCCCGTCTGGTGTGGAGTGGATAACAGCTTGGTCCATAAGGAAAAGGAAACTTGATACAAGTTCACTTCCGTTTCTGAAGACAGTAGCTAGGGCTTCAGGTTGGCCGTTGAACCGTTATCAGACATTGGCTTTGCTCATCTTTTCGTCAATCTTGGCGGTGGATCTGTGGTTTTGGGAGCTATTCTTCGGTACCACGGTGAATTGGGTCTCTGATGTTACCACAGAAATTCTTCGGTATGTTGGTAATTAA

Protein sequence

>Msa0964680

MVLTSISSISSPSSSSSSFFSDSPSTSKAFPSFLVGFPKPPFSNSTLKIKTCFASSTQQENGSPEQFLQSNSIADFMRFKKGIDGSTGLLQTAVVRYKKKFPWSLLKPFFQVDLISTIHIADEEYFLALQKELESYDCVLYEMVASKETLENMRNPMAKKRLKGSQTRGFNIIGCIQRQMAQILRLDFQLDCLNYQSENWQHADLDYETFQLLQQAKGESLFSFAKDMTLRSTKAMLQPSIPEDLDPWRSKLLWASRVLPMPLVGLFLIGSVCANVGSPASEYPEIEALSRLDVSAAMKVFLAKRLTSDLTQNTADVEEKSVIIGERNRVAIENLRKAMDKGQNKIAILYGGGHMPDLGRRLREEFDLVPSGVEWITAWSIRKRKLDTSSLPFLKTVARASGWPLNRYQTLALLIFSSILAVDLWFWELFFGTTVNWVSDVTTEILRYVGN*