AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1322420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1322420 MtrunA17_Chr8g0354891 86.983 484 10 3 1 431 1 484 0.0 839
Msa1322420 MtrunA17_Chr8g0354851 75.050 497 52 3 7 431 3 499 0.0 743
Msa1322420 MtrunA17_Chr8g0354841 76.569 478 59 3 7 431 3 480 0.0 740
Msa1322420 MtrunA17_Chr8g0354831 69.815 487 91 4 1 431 1 487 0.0 691
Msa1322420 MtrunA17_Chr3g0080421 60.656 488 134 5 1 431 1 487 0.0 596
Msa1322420 MtrunA17_Chr3g0080431 56.933 476 146 5 4 423 2 474 1.53e-180 512
Msa1322420 MtrunA17_Chr8g0364441 55.603 464 118 5 1 400 1 440 1.87e-177 503
Msa1322420 MtrunA17_Chr8g0354861 76.056 284 32 2 149 396 4 287 1.77e-150 429
Msa1322420 MtrunA17_Chr3g0123421 62.201 209 57 2 1 188 1 208 3.55e-80 246
Msa1322420 MtrunA17_Chr3g0123441 60.638 94 22 1 317 395 1 94 4.06e-30 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1322420 AT5G13750.1 49.375 480 185 7 1 424 1 478 1.48e-161 464
Msa1322420 AT5G13740.1 47.228 487 193 6 1 424 1 486 6.64e-151 437
Msa1322420 AT5G13740.2 49.433 441 176 5 1 395 1 440 5.86e-150 433
Msa1322420 AT3G43790.1 44.468 479 205 5 1 421 1 476 1.14e-144 421
Msa1322420 AT3G43790.4 44.468 479 205 5 1 421 1 476 1.14e-144 421
Msa1322420 AT3G43790.2 43.918 485 205 5 1 421 1 482 1.80e-143 418
Msa1322420 AT3G43790.3 43.918 485 205 5 1 421 1 482 1.80e-143 418
Msa1322420 AT5G13750.3 49.874 397 173 5 1 373 1 395 1.11e-138 403
Msa1322420 AT5G13750.4 49.874 397 173 5 1 373 1 395 1.11e-138 403
Msa1322420 AT3G43790.5 46.056 393 183 3 1 367 1 390 9.05e-128 375
Msa1322420 AT5G13750.2 48.469 392 146 5 89 424 1 392 1.06e-125 370
Msa1322420 AT5G13940.2 41.250 80 31 1 248 327 8 71 1.17e-13 73.6
Msa1322420 AT5G13940.1 41.250 80 31 1 248 327 159 222 1.69e-13 73.2

Find 115 sgRNAs with CRISPR-Local

Find 355 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTTCCCTTCCTTTATTTCA+TGG 0.165001 8_4:-29442907 Msa1322420:intron
GGTGATGTTCTTTCAATTTC+AGG 0.192163 8_4:-29439532 Msa1322420:intron
AGTTACTATGCTGGTTATAT+TGG 0.247965 8_4:-29442149 Msa1322420:intron
TATTTCCAAAAGACTCCTTT+TGG 0.262117 8_4:-29440356 Msa1322420:CDS
CGAAAACCTGTATTAATAAT+GGG 0.292773 8_4:-29441973 Msa1322420:CDS
TTTCTTCTCGGAGGTTTAAA+TGG 0.293841 8_4:-29441788 Msa1322420:CDS
TTCCATTAGCTGCCCCTCTT+TGG 0.304002 8_4:+29438839 None:intergenic
CTGTTAGTCCTCTGAGGCTA+GGG 0.304962 8_4:-29439582 Msa1322420:CDS
TCGAAAACCTGTATTAATAA+TGG 0.307777 8_4:-29441974 Msa1322420:CDS
GTAAAGCAGGGCAAGAAGTA+TGG 0.308634 8_4:+29440215 None:intergenic
TTATCCCAAAAGGAGTCTTT+TGG 0.310679 8_4:+29440351 None:intergenic
CTTATGTATGTCAGAGAAAT+CGG 0.312310 8_4:+29443583 None:intergenic
CCCTTCATAGCAATGTTATC+AGG 0.316047 8_4:-29439212 Msa1322420:CDS
GATGTTTCACAGCTGTATTA+TGG 0.319545 8_4:-29442020 Msa1322420:CDS
ATGAAAACCTCTTCATGAAT+TGG 0.334833 8_4:-29439783 Msa1322420:CDS
CAAGTCCTTCAACTAAATTA+AGG 0.344503 8_4:+29437937 None:intergenic
TTGATGTGTAAACCATTTCT+TGG 0.346056 8_4:-29437906 Msa1322420:CDS
GATGCCGAAGCTTTAGAAAA+TGG 0.351168 8_4:-29439835 Msa1322420:CDS
AATACTAATCACAATGTATA+AGG 0.356429 8_4:+29439184 None:intergenic
CGAGAAGAGCACCAAGCTAT+AGG 0.358397 8_4:-29441629 Msa1322420:CDS
CTTAATTTAGTTGAAGGACT+TGG 0.359089 8_4:-29437936 Msa1322420:CDS
CAGTAGCCATTGTCTGCATC+TGG 0.361846 8_4:-29440172 Msa1322420:CDS
GCAATGATAGATGACATTAA+AGG 0.367674 8_4:+29439760 None:intergenic
CATTGTCTGCATCTGGATTC+CGG 0.370257 8_4:-29440165 Msa1322420:intron
ATTGTCTTGGCCCGCATCAC+AGG 0.371288 8_4:-29439354 Msa1322420:CDS
ATGTTTCACAGCTGTATTAT+GGG 0.376227 8_4:-29442019 Msa1322420:CDS
ATTATGATATGTACCTTAAC+TGG 0.378185 8_4:+29441755 None:intergenic
ATAAACTCACCATGAAATAA+AGG 0.383235 8_4:+29442898 None:intergenic
TTCTTCCTTAATTTAGTTGA+AGG 0.384116 8_4:-29437942 Msa1322420:CDS
ATAATCCCCATTATTAATAC+AGG 0.384478 8_4:+29441967 None:intergenic
GCTGTTAGTCCTCTGAGGCT+AGG 0.385522 8_4:-29439583 Msa1322420:CDS
TTACAGCAATAACATTCTTA+AGG 0.400756 8_4:+29439153 None:intergenic
AAATTAATATGTTGTCATAA+AGG 0.400795 8_4:-29437747 Msa1322420:three_prime_UTR
TCCTGATAACATTGCTATGA+AGG 0.404149 8_4:+29439211 None:intergenic
CACATTATTCGGCCTTAGTA+CGG 0.407588 8_4:-29441837 Msa1322420:CDS
CACCAAAGAGGGGCAGCTAA+TGG 0.408771 8_4:-29438841 Msa1322420:CDS
ATTTGTGGATATTTGTCTAC+AGG 0.409111 8_4:+29440378 None:intergenic
CACTTTCCCTTGCGTACGCA+TGG 0.409903 8_4:-29437830 Msa1322420:three_prime_UTR
TTTATAATGAATAAGACATA+TGG 0.417331 8_4:+29437708 None:intergenic
TGGCGTGCTTGGACCAGTTA+AGG 0.432244 8_4:-29441768 Msa1322420:intron
CACAGCTGTATTATGGGGAA+TGG 0.442320 8_4:-29442013 Msa1322420:CDS
ACCTATGGAGCTCAATGAAT+GGG 0.447833 8_4:+29443527 None:intergenic
AACAGGAACAACACCAAAGA+GGG 0.450572 8_4:-29438852 Msa1322420:intron
GTGATGCGGGCCAAGACAAT+AGG 0.460321 8_4:+29439357 None:intergenic
GGAGGTTTAAATGGCGTGCT+TGG 0.463077 8_4:-29441779 Msa1322420:CDS
AGCAATAACATTCTTAAGGA+TGG 0.463454 8_4:+29439157 None:intergenic
AACCTATGGAGCTCAATGAA+TGG 0.471065 8_4:+29443526 None:intergenic
TGGGTCAATTTGTTTAATGT+AGG 0.472473 8_4:-29437810 Msa1322420:three_prime_UTR
AAAGCTGTTGGACCTGCTGC+TGG 0.472813 8_4:-29438790 Msa1322420:CDS
CATATGGATATATGAAAAGT+TGG 0.474064 8_4:+29439397 None:intergenic
AAGGGGTAACTTTGCAAAAG+TGG 0.475663 8_4:+29439230 None:intergenic
TTGTCTTGGCCCGCATCACA+GGG 0.478766 8_4:-29439353 Msa1322420:CDS
AAAACTTACCCCTGTGATGC+GGG 0.480200 8_4:+29439344 None:intergenic
TTATGTATGTCAGAGAAATC+GGG 0.492652 8_4:+29443584 None:intergenic
ATTGTCACGAGATTTCTTCT+CGG 0.495718 8_4:-29441800 Msa1322420:CDS
AAGTGCTGATATTGTAAAGC+AGG 0.496000 8_4:+29440202 None:intergenic
TTTAACTGCAGGAACTCAAA+TGG 0.496682 8_4:-29437970 Msa1322420:intron
TCCCATTCATTGAGCTCCAT+AGG 0.503447 8_4:-29443528 Msa1322420:five_prime_UTR
ACATTATTCGGCCTTAGTAC+GGG 0.508387 8_4:-29441836 Msa1322420:CDS
CCTGATAACATTGCTATGAA+GGG 0.508710 8_4:+29439212 None:intergenic
CATAAGGTGCATGTGAGACT+AGG 0.510437 8_4:-29443566 Msa1322420:five_prime_UTR
GCTGATATTAGTTACTATGC+TGG 0.515027 8_4:-29442158 Msa1322420:CDS
GTCCACTTACTTATCCCAAA+AGG 0.516728 8_4:+29440341 None:intergenic
TGAGGATTGTCCTGGTTGTA+AGG 0.517571 8_4:-29443273 Msa1322420:CDS
CGATTTCTCTGACATACATA+AGG 0.518399 8_4:-29443582 Msa1322420:five_prime_UTR
TATTGCTTCTTCTCCAACAA+TGG 0.519872 8_4:+29443299 None:intergenic
GCATATGAGAGAGCCATTGT+TGG 0.520685 8_4:-29443312 Msa1322420:CDS
TGTTAGTCCTCTGAGGCTAG+GGG 0.525174 8_4:-29439581 Msa1322420:CDS
GTAGGATCTTCATACATGCT+TGG 0.530305 8_4:-29442045 Msa1322420:intron
GTAACTTTGCAAAAGTGGTA+TGG 0.530998 8_4:+29439235 None:intergenic
AGCTTGTGGACCTATTGTCT+TGG 0.531880 8_4:-29439367 Msa1322420:CDS
TAAAGCAGGGCAAGAAGTAT+GGG 0.534775 8_4:+29440216 None:intergenic
CAAGCAAATGAGCTTAATGA+AGG 0.535127 8_4:-29443245 Msa1322420:CDS
AAGGGAAAGAGAGATGATGT+AGG 0.538040 8_4:+29442921 None:intergenic
CAAGGGAAAGTGATATAGCT+AGG 0.547520 8_4:+29437841 None:intergenic
TTAAAGGCCAATTCATGAAG+AGG 0.547614 8_4:+29439776 None:intergenic
ACTTTCCCTTGCGTACGCAT+GGG 0.553296 8_4:-29437829 Msa1322420:three_prime_UTR
ACAGTTCCGTGAGAAACCTA+TGG 0.557399 8_4:+29443512 None:intergenic
AATTGACCCATGCGTACGCA+AGG 0.557948 8_4:+29437823 None:intergenic
CAATACTATGAGGATTGTCC+TGG 0.559637 8_4:-29443281 Msa1322420:CDS
ATGTCTCTATTCAAAGCTGT+TGG 0.560681 8_4:-29438802 Msa1322420:CDS
CACATTGTACCACCAGCAGC+AGG 0.570958 8_4:+29438778 None:intergenic
TTCTGTAACAAACATGGAGG+AGG 0.580200 8_4:-29443336 Msa1322420:exon
TCATGATATTGCTTATCAAG+AGG 0.581145 8_4:-29439719 Msa1322420:intron
ACTCACCATGAAATAAAGGA+AGG 0.582200 8_4:+29442902 None:intergenic
CGGTAGAAAGTCCTATAGCT+TGG 0.583615 8_4:+29441618 None:intergenic
AAATCGGGGTTTGTAAGATG+AGG 0.584470 8_4:+29443599 None:intergenic
GCTTGTTCCACCTTACAACC+AGG 0.584931 8_4:+29443263 None:intergenic
CGGAATCCAGATGCAGACAA+TGG 0.590292 8_4:+29440166 None:intergenic
AAACAGGAACAACACCAAAG+AGG 0.593747 8_4:-29438853 Msa1322420:intron
GGAGAAGAAGCAATACTATG+AGG 0.594400 8_4:-29443291 Msa1322420:CDS
GTCACGAGATTTCTTCTCGG+AGG 0.595988 8_4:-29441797 Msa1322420:CDS
GAATGGGAATGAACAACACT+AGG 0.600227 8_4:+29443543 None:intergenic
CTCACCATGAAATAAAGGAA+GGG 0.600349 8_4:+29442903 None:intergenic
GAAAACTTACCCCTGTGATG+CGG 0.607952 8_4:+29439343 None:intergenic
GTTAGTCCTCTGAGGCTAGG+GGG 0.610530 8_4:-29439580 Msa1322420:CDS
AATGGTAGCGAAGAGTTCAA+AGG 0.611758 8_4:-29439859 Msa1322420:CDS
ACATATGGTTAAGAAGAAAG+AGG 0.611954 8_4:+29437723 None:intergenic
TGAGCTCCATAGGTTTCTCA+CGG 0.612167 8_4:-29443518 Msa1322420:five_prime_UTR
GAAAACCTGTATTAATAATG+GGG 0.613201 8_4:-29441972 Msa1322420:CDS
TGTTTCACAGCTGTATTATG+GGG 0.615339 8_4:-29442018 Msa1322420:CDS
CTGATAACATTGCTATGAAG+GGG 0.616481 8_4:+29439213 None:intergenic
AAGTTTACAACTGATGATGT+TGG 0.618360 8_4:-29439553 Msa1322420:CDS
ATTGAATTCTGTAACAAACA+TGG 0.635180 8_4:-29443342 Msa1322420:exon
GCTGTTGGACCTGCTGCTGG+TGG 0.638330 8_4:-29438787 Msa1322420:intron
AGTGCTGATATTGTAAAGCA+GGG 0.641165 8_4:+29440203 None:intergenic
TGTGGGCTGTTAGTCCTCTG+AGG 0.646848 8_4:-29439588 Msa1322420:CDS
TATGTATGTCAGAGAAATCG+GGG 0.649196 8_4:+29443585 None:intergenic
ATTGACCCATGCGTACGCAA+GGG 0.657339 8_4:+29437824 None:intergenic
GGAATGGTTTCAGATCGCTA+TGG 0.663331 8_4:-29441997 Msa1322420:CDS
GGATTGTCCTGGTTGTAAGG+TGG 0.686354 8_4:-29443270 Msa1322420:CDS
GAAACACTTCACAATCACAA+TGG 0.703385 8_4:-29439877 Msa1322420:CDS
ACAGGAACAACACCAAAGAG+GGG 0.717818 8_4:-29438851 Msa1322420:intron
GAATTCTGTAACAAACATGG+AGG 0.737814 8_4:-29443339 Msa1322420:exon
TGTCTTGGCCCGCATCACAG+GGG 0.765570 8_4:-29439352 Msa1322420:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATCAAAAGTTTTATAA+TGG + chr8_4:29438121-29438140 None:intergenic 10.0%
!!! TTATAAAACTTTTGATTATA+TGG - chr8_4:29438121-29438140 Msa1322420:intron 10.0%
!!! TTTTTCAAATTTTATGAATT+TGG - chr8_4:29440144-29440163 Msa1322420:intron 10.0%
!!! TTTTAATTTATATGAATTCA+AGG + chr8_4:29441691-29441710 None:intergenic 10.0%
!!! TTGTAATTTTTTTTAATAAG+GGG + chr8_4:29442682-29442701 None:intergenic 10.0%
!! AAAATATGTAGATAAAAAAT+TGG + chr8_4:29442935-29442954 None:intergenic 10.0%
!!! CAATAAATATTTATGATTTT+TGG + chr8_4:29443133-29443152 None:intergenic 10.0%
!!! CAATTAATTTTGACAAAAAT+TGG - chr8_4:29438725-29438744 Msa1322420:intron 15.0%
!!! AAATCTTTTGAAATGAAATA+CGG + chr8_4:29438806-29438825 None:intergenic 15.0%
!!! AATAATGCAACATTTATTTT+AGG - chr8_4:29439125-29439144 Msa1322420:intron 15.0%
!!! ACTTTTATGTTATATAACAT+TGG - chr8_4:29439865-29439884 Msa1322420:CDS 15.0%
!! TATATAACATTGACAAATAA+GGG + chr8_4:29440591-29440610 None:intergenic 15.0%
!! TTATATAACATTGACAAATA+AGG + chr8_4:29440592-29440611 None:intergenic 15.0%
!! CAAAATTGAAATATCATTTA+AGG + chr8_4:29441093-29441112 None:intergenic 15.0%
!!! AAATGATATTTCAATTTTGT+AGG - chr8_4:29441094-29441113 Msa1322420:intron 15.0%
!! AGGTAAATTTCTAATTATTT+AGG - chr8_4:29441636-29441655 Msa1322420:CDS 15.0%
!!! CTAATTATTTAGGTTAAAAA+TGG - chr8_4:29441646-29441665 Msa1322420:CDS 15.0%
!!! AATAAATATGTATCATTTTC+AGG - chr8_4:29441844-29441863 Msa1322420:CDS 15.0%
!!! CAATTAATTAAACTGAATTT+TGG + chr8_4:29442236-29442255 None:intergenic 15.0%
!! TATTAATATCAAAATTTACG+AGG + chr8_4:29442431-29442450 None:intergenic 15.0%
!! TTGATATTAATAGTTGTTTA+TGG - chr8_4:29442439-29442458 Msa1322420:intron 15.0%
!!! AAATGTTAGTAGAATTTTTT+AGG - chr8_4:29442608-29442627 Msa1322420:intron 15.0%
!! AAATTAATATGTTGTCATAA+AGG - chr8_4:29443588-29443607 Msa1322420:five_prime_UTR 15.0%
!! TCACTTTATATGAAATATGA+AGG + chr8_4:29437952-29437971 None:intergenic 20.0%
!! TGATATATAGAAAAAAGAGA+AGG - chr8_4:29437969-29437988 Msa1322420:intron 20.0%
!!! AAAACTTTTGATTATATGGA+TGG - chr8_4:29438125-29438144 Msa1322420:intron 20.0%
!! AACAACAATTATTCTTAAAG+TGG + chr8_4:29438199-29438218 None:intergenic 20.0%
!!! TGACATTTGTTATTTCTTAA+AGG - chr8_4:29438510-29438529 Msa1322420:intron 20.0%
!!! ATCATGGACAAAATTATTTT+TGG - chr8_4:29438873-29438892 Msa1322420:intron 20.0%
!!! TTTGGTTAATAATTTTCCTT+CGG - chr8_4:29438891-29438910 Msa1322420:intron 20.0%
!! GAAACTAGAAATTTACATTA+TGG + chr8_4:29439015-29439034 None:intergenic 20.0%
!! TGATAAAAGACTTAAATGAA+TGG + chr8_4:29439232-29439251 None:intergenic 20.0%
!! ATCACACTGAATTATTATAA+TGG + chr8_4:29439792-29439811 None:intergenic 20.0%
!! ATATAACATAAAAGTCACTA+TGG + chr8_4:29439860-29439879 None:intergenic 20.0%
!! TTATATAACATTGGCAAATA+AGG - chr8_4:29439874-29439893 Msa1322420:CDS 20.0%
!! TATATAACATTGGCAAATAA+GGG - chr8_4:29439875-29439894 Msa1322420:CDS 20.0%
!! GAAAAAAAAAAAGATTGTGA+AGG + chr8_4:29440130-29440149 None:intergenic 20.0%
!!! CAAATTTTATGAATTTGGTT+TGG - chr8_4:29440149-29440168 Msa1322420:intron 20.0%
!!! AATTTGTTGTAAAAAAACTC+AGG - chr8_4:29440417-29440436 Msa1322420:intron 20.0%
!! TATAACATAAAAAACCACTA+TGG - chr8_4:29440607-29440626 Msa1322420:intron 20.0%
!! TATGAGCATGTAAAAATTTA+AGG + chr8_4:29440755-29440774 None:intergenic 20.0%
!!! TACATTATTTGAAATGCTTT+TGG - chr8_4:29440779-29440798 Msa1322420:intron 20.0%
!! AAAACTAAAGAATTCAACTT+TGG - chr8_4:29441040-29441059 Msa1322420:intron 20.0%
!!! TACTAACTTGTGAAATTATT+AGG - chr8_4:29441897-29441916 Msa1322420:intron 20.0%
!! AATACTAATCACAATGTATA+AGG + chr8_4:29442154-29442173 None:intergenic 20.0%
!!! ACTGGTTGTATTATATTTTA+TGG - chr8_4:29442284-29442303 Msa1322420:intron 20.0%
!!! GTATTATATTTTATGGACTT+AGG - chr8_4:29442291-29442310 Msa1322420:intron 20.0%
!!! TTCTGTCATTTTTTTCATAA+GGG - chr8_4:29442860-29442879 Msa1322420:intron 20.0%
!!! TGTTCTTTTTCTTTTGATAT+TGG - chr8_4:29442994-29443013 Msa1322420:intron 20.0%
!!! CAACTTTTTGAGAAATTAAT+CGG - chr8_4:29443168-29443187 Msa1322420:intron 20.0%
!! TGGTATATTAAATGTTACAA+GGG + chr8_4:29443266-29443285 None:intergenic 20.0%
!! TTGGTATATTAAATGTTACA+AGG + chr8_4:29443267-29443286 None:intergenic 20.0%
!! ATACTAGCAAAGATATAATT+TGG + chr8_4:29443286-29443305 None:intergenic 20.0%
! ATTGAATTCTGTAACAAACA+TGG - chr8_4:29437993-29438012 Msa1322420:intron 25.0%
!!! TTTCTTAATTTGTTGTGTCA+CGG - chr8_4:29438283-29438302 Msa1322420:intron 25.0%
! CCTTACATAACTTATTCAAA+AGG + chr8_4:29438315-29438334 None:intergenic 25.0%
!! CCTTTTGAATAAGTTATGTA+AGG - chr8_4:29438312-29438331 Msa1322420:intron 25.0%
! ATAAACTCACCATGAAATAA+AGG + chr8_4:29438440-29438459 None:intergenic 25.0%
!!! ATTTTGACAAAAATTGGAGA+AGG - chr8_4:29438731-29438750 Msa1322420:intron 25.0%
!! TTTTGACAAAAATTGGAGAA+GGG - chr8_4:29438732-29438751 Msa1322420:intron 25.0%
! TTCATCATCATTCTTGTATA+TGG - chr8_4:29438974-29438993 Msa1322420:intron 25.0%
! TTGTATATGGTACAAACAAT+TGG - chr8_4:29438987-29439006 Msa1322420:intron 25.0%
! ACAAGATATGACAAAACAAA+GGG + chr8_4:29439049-29439068 None:intergenic 25.0%
!!! TGCAACATTTATTTTAGGTA+AGG - chr8_4:29439130-29439149 Msa1322420:intron 25.0%
!!! GCAACATTTATTTTAGGTAA+GGG - chr8_4:29439131-29439150 Msa1322420:intron 25.0%
! ATGAAGATTGAAAATGTTGT+AGG - chr8_4:29439272-29439291 Msa1322420:intron 25.0%
! TCGAAAACCTGTATTAATAA+TGG - chr8_4:29439361-29439380 Msa1322420:CDS 25.0%
! CGAAAACCTGTATTAATAAT+GGG - chr8_4:29439362-29439381 Msa1322420:CDS 25.0%
! GAAAACCTGTATTAATAATG+GGG - chr8_4:29439363-29439382 Msa1322420:CDS 25.0%
! ATAATCCCCATTATTAATAC+AGG + chr8_4:29439371-29439390 None:intergenic 25.0%
! AGTAAAACATGAACAATTGT+GGG + chr8_4:29439457-29439476 None:intergenic 25.0%
! AAGTAAAACATGAACAATTG+TGG + chr8_4:29439458-29439477 None:intergenic 25.0%
!!! GTCATTTTCAACACATTATT+CGG - chr8_4:29439487-29439506 Msa1322420:intron 25.0%
! ATTATGATATGTACCTTAAC+TGG + chr8_4:29439583-29439602 None:intergenic 25.0%
!!! ATTTGGTTTGGAATGAATTT+TGG - chr8_4:29440161-29440180 Msa1322420:intron 25.0%
!!! TTTGGTTTGGAATGAATTTT+GGG - chr8_4:29440162-29440181 Msa1322420:intron 25.0%
!!! TGCAATTTTTTTATCCTTTG+TGG + chr8_4:29440849-29440868 None:intergenic 25.0%
! TAAACTATAGAAACACAAGA+TGG + chr8_4:29441069-29441088 None:intergenic 25.0%
!! ATAATATCTAAGATGCATAC+CGG + chr8_4:29441192-29441211 None:intergenic 25.0%
!! GAAATCATTTTGCATTAGTA+TGG + chr8_4:29441370-29441389 None:intergenic 25.0%
! CTATTCATGTTTCTTTCTTT+AGG - chr8_4:29441715-29441734 Msa1322420:intron 25.0%
! CATATGGATATATGAAAAGT+TGG + chr8_4:29441941-29441960 None:intergenic 25.0%
!! ACTTTTCATATATCCATATG+TGG - chr8_4:29441941-29441960 Msa1322420:intron 25.0%
! TTACAGCAATAACATTCTTA+AGG + chr8_4:29442185-29442204 None:intergenic 25.0%
! TGTAAGTGAATCTCTTTAAA+TGG - chr8_4:29442200-29442219 Msa1322420:intron 25.0%
! CTTTGTATTACAAATTTGAC+TGG - chr8_4:29442266-29442285 Msa1322420:intron 25.0%
! CAAAACACAATTAATGAAAG+AGG + chr8_4:29442405-29442424 None:intergenic 25.0%
!! TTTTCAAAATGTTGCGATTA+TGG + chr8_4:29442763-29442782 None:intergenic 25.0%
!!! GCAACATTTTGAAAAGATAA+GGG - chr8_4:29442768-29442787 Msa1322420:intron 25.0%
!!! CAACATTTTGAAAAGATAAG+GGG - chr8_4:29442769-29442788 Msa1322420:intron 25.0%
! ATCATATTTCCCTTATGTTA+GGG - chr8_4:29442799-29442818 Msa1322420:intron 25.0%
!!! CTTCTGTCATTTTTTTCATA+AGG - chr8_4:29442859-29442878 Msa1322420:intron 25.0%
!!! TCTGTCATTTTTTTCATAAG+GGG - chr8_4:29442861-29442880 Msa1322420:intron 25.0%
!!! TCGCAACTTTTTGAAATTTA+AGG - chr8_4:29442890-29442909 Msa1322420:intron 25.0%
!!! CGCAACTTTTTGAAATTTAA+GGG - chr8_4:29442891-29442910 Msa1322420:intron 25.0%
!!! GCAACTTTTTGAAATTTAAG+GGG - chr8_4:29442892-29442911 Msa1322420:intron 25.0%
! TTGGTTAATACAGATTAACT+TGG - chr8_4:29443013-29443032 Msa1322420:intron 25.0%
! ATGATGATTGTTCATAGTTA+AGG + chr8_4:29443080-29443099 None:intergenic 25.0%
!! CTTTTATTAATCCCATCTTT+TGG - chr8_4:29443313-29443332 Msa1322420:CDS 25.0%
! TTCTTCCTTAATTTAGTTGA+AGG - chr8_4:29443393-29443412 Msa1322420:intron 25.0%
TTATGTATGTCAGAGAAATC+GGG + chr8_4:29437754-29437773 None:intergenic 30.0%
CTTATGTATGTCAGAGAAAT+CGG + chr8_4:29437755-29437774 None:intergenic 30.0%
!! ACTTTTGATTATATGGATGG+TGG - chr8_4:29438128-29438147 Msa1322420:intron 30.0%
! TGTGTTCTAAGTTCTTAGTA+CGG - chr8_4:29438246-29438265 Msa1322420:intron 30.0%
!! TTCTTAATTTGTTGTGTCAC+GGG - chr8_4:29438284-29438303 Msa1322420:intron 30.0%
TGTTAGATAGAGAAGAACAA+AGG + chr8_4:29438368-29438387 None:intergenic 30.0%
TTGAAATACTGGAAAAGACT+AGG + chr8_4:29438929-29438948 None:intergenic 30.0%
! CTTTTCCAGTATTTCAAGAA+AGG - chr8_4:29438932-29438951 Msa1322420:intron 30.0%
GTATTCCTTTCTTGAAATAC+TGG + chr8_4:29438940-29438959 None:intergenic 30.0%
CACAAGATATGACAAAACAA+AGG + chr8_4:29439050-29439069 None:intergenic 30.0%
! AGTTACTATGCTGGTTATAT+TGG - chr8_4:29439186-29439205 Msa1322420:CDS 30.0%
ATGTTTCACAGCTGTATTAT+GGG - chr8_4:29439316-29439335 Msa1322420:intron 30.0%
GACAAACTTCATCATTTAAC+AGG - chr8_4:29439663-29439682 Msa1322420:intron 30.0%
AGAAGAATTGTTGAGACTTA+CGG + chr8_4:29439740-29439759 None:intergenic 30.0%
ATTCAGTGTGATATGATTTC+AGG - chr8_4:29439800-29439819 Msa1322420:CDS 30.0%
!!! TGAATTTTGGGATTCATTGA+AGG - chr8_4:29440174-29440193 Msa1322420:CDS 30.0%
!!! TGAGTGAGTTTTGTTTTGAA+GGG - chr8_4:29440457-29440476 Msa1322420:intron 30.0%
ATTTGTGGATATTTGTCTAC+AGG + chr8_4:29440960-29440979 None:intergenic 30.0%
!! GAGTCTTTTGGAAATATTTG+TGG + chr8_4:29440975-29440994 None:intergenic 30.0%
! TATTTCCAAAAGACTCCTTT+TGG - chr8_4:29440979-29440998 Msa1322420:intron 30.0%
! ATTTCCAAAAGACTCCTTTT+GGG - chr8_4:29440980-29440999 Msa1322420:intron 30.0%
ATAGTTATTAAACTATCCGC+AGG - chr8_4:29441436-29441455 Msa1322420:intron 30.0%
! TGAAGAGGTTTTCATTCTTT+TGG + chr8_4:29441547-29441566 None:intergenic 30.0%
ATGAAAACCTCTTCATGAAT+TGG - chr8_4:29441552-29441571 Msa1322420:intron 30.0%
GCAATGATAGATGACATTAA+AGG + chr8_4:29441578-29441597 None:intergenic 30.0%
TCATGATATTGCTTATCAAG+AGG - chr8_4:29441616-29441635 Msa1322420:intron 30.0%
!! TTCTTTAGGTTTTCTCATTG+TGG - chr8_4:29441729-29441748 Msa1322420:intron 30.0%
!! TCTTTAGGTTTTCTCATTGT+GGG - chr8_4:29441730-29441749 Msa1322420:intron 30.0%
! AAGTTTACAACTGATGATGT+TGG - chr8_4:29441782-29441801 Msa1322420:CDS 30.0%
AGCAATAACATTCTTAAGGA+TGG + chr8_4:29442181-29442200 None:intergenic 30.0%
CAAATATACTTACCACTACT+CGG + chr8_4:29442351-29442370 None:intergenic 30.0%
!!! AACTTTTTGAAACTTAAGGG+GGG + chr8_4:29442649-29442668 None:intergenic 30.0%
!!! CAACTTTTTGAAACTTAAGG+GGG + chr8_4:29442650-29442669 None:intergenic 30.0%
!!! GCAACTTTTTGAAACTTAAG+GGG + chr8_4:29442651-29442670 None:intergenic 30.0%
!!! CGCAACTTTTTGAAACTTAA+GGG + chr8_4:29442652-29442671 None:intergenic 30.0%
!!! TCGCAACTTTTTGAAACTTA+AGG + chr8_4:29442653-29442672 None:intergenic 30.0%
! GTTTCAAAAAGTTGCGATTT+TGG - chr8_4:29442656-29442675 Msa1322420:intron 30.0%
!! CGCAACATTTTGAAAAGATA+AGG - chr8_4:29442767-29442786 Msa1322420:intron 30.0%
GATCATATTTCCCTTATGTT+AGG - chr8_4:29442798-29442817 Msa1322420:intron 30.0%
TCATATTTCCCTTATGTTAG+GGG - chr8_4:29442800-29442819 Msa1322420:intron 30.0%
CAAGTAATACACCAAAAGAT+GGG + chr8_4:29443327-29443346 None:intergenic 30.0%
TCAAGTAATACACCAAAAGA+TGG + chr8_4:29443328-29443347 None:intergenic 30.0%
CAAGTCCTTCAACTAAATTA+AGG + chr8_4:29443401-29443420 None:intergenic 30.0%
CTTAATTTAGTTGAAGGACT+TGG - chr8_4:29443399-29443418 Msa1322420:intron 30.0%
TTGATGTGTAAACCATTTCT+TGG - chr8_4:29443429-29443448 Msa1322420:intron 30.0%
! TTCTTCTTTTCACCAAGAAA+TGG + chr8_4:29443444-29443463 None:intergenic 30.0%
! TGGGTCAATTTGTTTAATGT+AGG - chr8_4:29443525-29443544 Msa1322420:five_prime_UTR 30.0%
ACATATGGTTAAGAAGAAAG+AGG + chr8_4:29443615-29443634 None:intergenic 30.0%
TATGTATGTCAGAGAAATCG+GGG + chr8_4:29437753-29437772 None:intergenic 35.0%
CGATTTCTCTGACATACATA+AGG - chr8_4:29437753-29437772 Msa1322420:three_prime_UTR 35.0%
GAATTCTGTAACAAACATGG+AGG - chr8_4:29437996-29438015 Msa1322420:intron 35.0%
TATTGCTTCTTCTCCAACAA+TGG + chr8_4:29438039-29438058 None:intergenic 35.0%
CAAGCAAATGAGCTTAATGA+AGG - chr8_4:29438090-29438109 Msa1322420:intron 35.0%
!! TCTTAATTTGTTGTGTCACG+GGG - chr8_4:29438285-29438304 Msa1322420:intron 35.0%
! AGAGAAGAACAAAGGTACAT+AGG + chr8_4:29438360-29438379 None:intergenic 35.0%
! CTTTCCCTTCCTTTATTTCA+TGG - chr8_4:29438428-29438447 Msa1322420:intron 35.0%
CTCACCATGAAATAAAGGAA+GGG + chr8_4:29438435-29438454 None:intergenic 35.0%
ACTCACCATGAAATAAAGGA+AGG + chr8_4:29438436-29438455 None:intergenic 35.0%
CATGGTGAGTTTATTTATCC+AGG - chr8_4:29438446-29438465 Msa1322420:intron 35.0%
! GAAAGGTATAGAATAAGTCC+TGG + chr8_4:29438467-29438486 None:intergenic 35.0%
CAGTGTAGTAATCTTGTGAA+AGG + chr8_4:29438484-29438503 None:intergenic 35.0%
! TCTGCACATCAGTTTTTGAA+AGG - chr8_4:29438657-29438676 Msa1322420:intron 35.0%
TAGGAAAAATATCGATCCGA+AGG + chr8_4:29438910-29438929 None:intergenic 35.0%
ATGATGAATAAACAGCGAAG+TGG + chr8_4:29438962-29438981 None:intergenic 35.0%
GCTGATATTAGTTACTATGC+TGG - chr8_4:29439177-29439196 Msa1322420:CDS 35.0%
GATGTTTCACAGCTGTATTA+TGG - chr8_4:29439315-29439334 Msa1322420:intron 35.0%
TGTTTCACAGCTGTATTATG+GGG - chr8_4:29439317-29439336 Msa1322420:intron 35.0%
ATTGTCACGAGATTTCTTCT+CGG - chr8_4:29439535-29439554 Msa1322420:CDS 35.0%
TTTCTTCTCGGAGGTTTAAA+TGG - chr8_4:29439547-29439566 Msa1322420:CDS 35.0%
TCGAAAAAGTTCAGTAGCAT+AGG + chr8_4:29439689-29439708 None:intergenic 35.0%
AAGGCAAGAGGAAGAATTAA+CGG + chr8_4:29440111-29440130 None:intergenic 35.0%
AAAAAGATTGTGAAGGCAAG+AGG + chr8_4:29440123-29440142 None:intergenic 35.0%
AAACTCAGGAAAACTGATGA+TGG - chr8_4:29440431-29440450 Msa1322420:intron 35.0%
!!! GTGAGTGAGTTTTGTTTTGA+AGG - chr8_4:29440456-29440475 Msa1322420:intron 35.0%
!!! GAGTGAGTTTTGTTTTGAAG+GGG - chr8_4:29440458-29440477 Msa1322420:intron 35.0%
! ATGCTTTTGGCATATTGAGA+AGG - chr8_4:29440792-29440811 Msa1322420:intron 35.0%
CAATCAATTGAGAACCACAA+AGG - chr8_4:29440832-29440851 Msa1322420:intron 35.0%
! TTATCCCAAAAGGAGTCTTT+TGG + chr8_4:29440987-29441006 None:intergenic 35.0%
!! AGTGCTGATATTGTAAAGCA+GGG + chr8_4:29441135-29441154 None:intergenic 35.0%
!! AAGTGCTGATATTGTAAAGC+AGG + chr8_4:29441136-29441155 None:intergenic 35.0%
GAAACACTTCACAATCACAA+TGG - chr8_4:29441458-29441477 Msa1322420:intron 35.0%
!!! GCTTCCATTTTCTAAAGCTT+CGG + chr8_4:29441507-29441526 None:intergenic 35.0%
TTAAAGGCCAATTCATGAAG+AGG + chr8_4:29441562-29441581 None:intergenic 35.0%
GGTGATGTTCTTTCAATTTC+AGG - chr8_4:29441803-29441822 Msa1322420:CDS 35.0%
GTAACTTTGCAAAAGTGGTA+TGG + chr8_4:29442103-29442122 None:intergenic 35.0%
CTGATAACATTGCTATGAAG+GGG + chr8_4:29442125-29442144 None:intergenic 35.0%
CCTGATAACATTGCTATGAA+GGG + chr8_4:29442126-29442145 None:intergenic 35.0%
TCCTGATAACATTGCTATGA+AGG + chr8_4:29442127-29442146 None:intergenic 35.0%
GACTTAGGTGACAATTACAA+CGG - chr8_4:29442306-29442325 Msa1322420:intron 35.0%
ACTTAGGTGACAATTACAAC+GGG - chr8_4:29442307-29442326 Msa1322420:intron 35.0%
! ATGGAAGTGTGACATTGATT+TGG - chr8_4:29442458-29442477 Msa1322420:intron 35.0%
!! GTGACATTGATTTGGAAAAC+AGG - chr8_4:29442466-29442485 Msa1322420:intron 35.0%
ATGTCTCTATTCAAAGCTGT+TGG - chr8_4:29442533-29442552 Msa1322420:intron 35.0%
CATATTTCCCTTATGTTAGG+GGG - chr8_4:29442801-29442820 Msa1322420:intron 35.0%
! CTTTTAACCCCCTAACATAA+GGG + chr8_4:29442811-29442830 None:intergenic 35.0%
! TCTTTTAACCCCCTAACATA+AGG + chr8_4:29442812-29442831 None:intergenic 35.0%
AGAGCATATTTCCCTAAACA+TGG - chr8_4:29442829-29442848 Msa1322420:intron 35.0%
GAGCATATTTCCCTAAACAT+GGG - chr8_4:29442830-29442849 Msa1322420:intron 35.0%
AGCATATTTCCCTAAACATG+GGG - chr8_4:29442831-29442850 Msa1322420:intron 35.0%
TCATAGTTAAGGATCAAACC+TGG + chr8_4:29443069-29443088 None:intergenic 35.0%
ACTATTGCACATTTAACTGC+AGG - chr8_4:29443354-29443373 Msa1322420:five_prime_UTR 35.0%
TTTAACTGCAGGAACTCAAA+TGG - chr8_4:29443365-29443384 Msa1322420:five_prime_UTR 35.0%
AAATCGGGGTTTGTAAGATG+AGG + chr8_4:29437739-29437758 None:intergenic 40.0%
GAATGGGAATGAACAACACT+AGG + chr8_4:29437795-29437814 None:intergenic 40.0%
ACCTATGGAGCTCAATGAAT+GGG + chr8_4:29437811-29437830 None:intergenic 40.0%
AACCTATGGAGCTCAATGAA+TGG + chr8_4:29437812-29437831 None:intergenic 40.0%
TTCTGTAACAAACATGGAGG+AGG - chr8_4:29437999-29438018 Msa1322420:intron 40.0%
GGAGAAGAAGCAATACTATG+AGG - chr8_4:29438044-29438063 Msa1322420:intron 40.0%
CAATACTATGAGGATTGTCC+TGG - chr8_4:29438054-29438073 Msa1322420:intron 40.0%
! GAACAAAGGTACATAGGACA+TGG + chr8_4:29438354-29438373 None:intergenic 40.0%
AAGGGAAAGAGAGATGATGT+AGG + chr8_4:29438417-29438436 None:intergenic 40.0%
! ACTTGCTAGTTGCTTCTCTA+TGG - chr8_4:29438680-29438699 Msa1322420:intron 40.0%
! CTATGTCGCTTGAGATTACA+TGG - chr8_4:29438829-29438848 Msa1322420:CDS 40.0%
! TTTTGTCCATGATGTGTCAG+TGG + chr8_4:29438866-29438885 None:intergenic 40.0%
GTAGGATCTTCATACATGCT+TGG - chr8_4:29439290-29439309 Msa1322420:intron 40.0%
CACATTATTCGGCCTTAGTA+CGG - chr8_4:29439498-29439517 Msa1322420:intron 40.0%
ACATTATTCGGCCTTAGTAC+GGG - chr8_4:29439499-29439518 Msa1322420:intron 40.0%
!! ATTTCAGGTTAGTGCAGCTT+CGG - chr8_4:29439815-29439834 Msa1322420:CDS 40.0%
AAGTCACTATGGTACACAAG+TGG + chr8_4:29439849-29439868 None:intergenic 40.0%
!!! GAGTTTTGTTTTGAAGGGGA+AGG - chr8_4:29440462-29440481 Msa1322420:intron 40.0%
GGGAAGGAAGAAGAAGAAAA+GGG - chr8_4:29440478-29440497 Msa1322420:intron 40.0%
! TATATAAAGGGTGTGCCATG+TGG - chr8_4:29440561-29440580 Msa1322420:intron 40.0%
AATTAAACCTATGCCCCAAG+CGG + chr8_4:29440647-29440666 None:intergenic 40.0%
TGGGGCATAGGTTTAATTGT+TGG - chr8_4:29440649-29440668 Msa1322420:intron 40.0%
TTAATTGTTGGCCCAGCAAT+AGG - chr8_4:29440661-29440680 Msa1322420:intron 40.0%
!!! CTCCTTTTGGGATAAGTAAG+TGG - chr8_4:29440992-29441011 Msa1322420:intron 40.0%
GTCCACTTACTTATCCCAAA+AGG + chr8_4:29440997-29441016 None:intergenic 40.0%
! TAAAGCAGGGCAAGAAGTAT+GGG + chr8_4:29441122-29441141 None:intergenic 40.0%
TCGTCACAAAACATGAAGAC+AGG + chr8_4:29441253-29441272 None:intergenic 40.0%
! TGTCTTCATGTTTTGTGACG+AGG - chr8_4:29441252-29441271 Msa1322420:intron 40.0%
! TGATTGTGAAGTGTTTCCTG+CGG + chr8_4:29441455-29441474 None:intergenic 40.0%
! AATGGTAGCGAAGAGTTCAA+AGG - chr8_4:29441476-29441495 Msa1322420:intron 40.0%
!! GATGCCGAAGCTTTAGAAAA+TGG - chr8_4:29441500-29441519 Msa1322420:intron 40.0%
!! CCACAAGCTTTTTCCACATA+TGG + chr8_4:29441957-29441976 None:intergenic 40.0%
CCATATGTGGAAAAAGCTTG+TGG - chr8_4:29441954-29441973 Msa1322420:intron 40.0%
AAGGGGTAACTTTGCAAAAG+TGG + chr8_4:29442108-29442127 None:intergenic 40.0%
CCCTTCATAGCAATGTTATC+AGG - chr8_4:29442123-29442142 Msa1322420:intron 40.0%
CTTAGGTGACAATTACAACG+GGG - chr8_4:29442308-29442327 Msa1322420:intron 40.0%
AAACAGGAACAACACCAAAG+AGG - chr8_4:29442482-29442501 Msa1322420:intron 40.0%
AACAGGAACAACACCAAAGA+GGG - chr8_4:29442483-29442502 Msa1322420:intron 40.0%
GCATATTTCCCTAAACATGG+GGG - chr8_4:29442832-29442851 Msa1322420:intron 40.0%
CATATTTCCCTAAACATGGG+GGG - chr8_4:29442833-29442852 Msa1322420:intron 40.0%
! AACTTGGTCACAAAAGCGTA+TGG - chr8_4:29443029-29443048 Msa1322420:intron 40.0%
AGTTAAGGATCAAACCTGGT+AGG + chr8_4:29443065-29443084 None:intergenic 40.0%
CAAGGGAAAGTGATATAGCT+AGG + chr8_4:29443497-29443516 None:intergenic 40.0%
CATAAGGTGCATGTGAGACT+AGG - chr8_4:29437769-29437788 Msa1322420:three_prime_UTR 45.0%
TCCCATTCATTGAGCTCCAT+AGG - chr8_4:29437807-29437826 Msa1322420:three_prime_UTR 45.0%
TGAGCTCCATAGGTTTCTCA+CGG - chr8_4:29437817-29437836 Msa1322420:three_prime_UTR 45.0%
ACAGTTCCGTGAGAAACCTA+TGG + chr8_4:29437826-29437845 None:intergenic 45.0%
GCATATGAGAGAGCCATTGT+TGG - chr8_4:29438023-29438042 Msa1322420:intron 45.0%
TGAGGATTGTCCTGGTTGTA+AGG - chr8_4:29438062-29438081 Msa1322420:intron 45.0%
GTCTTACCACTGACACATCA+TGG - chr8_4:29438857-29438876 Msa1322420:intron 45.0%
CACAGCTGTATTATGGGGAA+TGG - chr8_4:29439322-29439341 Msa1322420:intron 45.0%
GGAATGGTTTCAGATCGCTA+TGG - chr8_4:29439338-29439357 Msa1322420:intron 45.0%
CCATCCAAAAACCCGTACTA+AGG + chr8_4:29439513-29439532 None:intergenic 45.0%
!! CCTTAGTACGGGTTTTTGGA+TGG - chr8_4:29439510-29439529 Msa1322420:intron 45.0%
CGGTAGAAAGTCCTATAGCT+TGG + chr8_4:29439720-29439739 None:intergenic 45.0%
!! TTTCAGGTTAGTGCAGCTTC+GGG - chr8_4:29439816-29439835 Msa1322420:CDS 45.0%
! TTTAAAAAGGGTGTGCCACG+TGG + chr8_4:29439905-29439924 None:intergenic 45.0%
TATGGTATAACCGTGGTCGA+CGG + chr8_4:29440083-29440102 None:intergenic 45.0%
GCAAGAGGAAGAATTAACGG+CGG + chr8_4:29440108-29440127 None:intergenic 45.0%
GGGGAAGGAAGAAGAAGAAA+AGG - chr8_4:29440477-29440496 Msa1322420:intron 45.0%
! ACAAATAAGGGTGTGCCACA+TGG + chr8_4:29440579-29440598 None:intergenic 45.0%
AAACCACTATGGCACACAAG+TGG - chr8_4:29440618-29440637 Msa1322420:intron 45.0%
ATTAAACCTATGCCCCAAGC+GGG + chr8_4:29440646-29440665 None:intergenic 45.0%
CCAAATAGCCTCCTATTGCT+GGG + chr8_4:29440675-29440694 None:intergenic 45.0%
! AATAGGAGGCTATTTGGCTC+AGG - chr8_4:29440678-29440697 Msa1322420:intron 45.0%
GTAAAGCAGGGCAAGAAGTA+TGG + chr8_4:29441123-29441142 None:intergenic 45.0%
CATTGTCTGCATCTGGATTC+CGG - chr8_4:29441170-29441189 Msa1322420:intron 45.0%
AGCTTGTGGACCTATTGTCT+TGG - chr8_4:29441968-29441987 Msa1322420:CDS 45.0%
AAAACTTACCCCTGTGATGC+GGG + chr8_4:29441994-29442013 None:intergenic 45.0%
GAAAACTTACCCCTGTGATG+CGG + chr8_4:29441995-29442014 None:intergenic 45.0%
!! CCACTACTCGGTTTTGTACA+AGG + chr8_4:29442339-29442358 None:intergenic 45.0%
CCTTGTACAAAACCGAGTAG+TGG - chr8_4:29442336-29442355 Msa1322420:intron 45.0%
ACAGGAACAACACCAAAGAG+GGG - chr8_4:29442484-29442503 Msa1322420:intron 45.0%
! TGGCGTCTTCTCAGCAATTT+TGG + chr8_4:29442722-29442741 None:intergenic 45.0%
!!! GCGATTATGGCCCCTTTTTT+GGG + chr8_4:29442750-29442769 None:intergenic 45.0%
!!! TGCGATTATGGCCCCTTTTT+TGG + chr8_4:29442751-29442770 None:intergenic 45.0%
ATGGATGCTTCTTTCCTACC+AGG - chr8_4:29443048-29443067 Msa1322420:intron 45.0%
!!! TGATTTTTTATTTTTAAAAA+GGG + chr8_4:29439917-29439936 None:intergenic 5.0%
!!! TTGATTTTTTATTTTTAAAA+AGG + chr8_4:29439918-29439937 None:intergenic 5.0%
!!! TTTGATTTTTTTATATATAA+AGG - chr8_4:29440548-29440567 Msa1322420:intron 5.0%
!!! TTGATTTTTTTATATATAAA+GGG - chr8_4:29440549-29440568 Msa1322420:intron 5.0%
!!! ATTGTAATTTTTTTTAATAA+GGG + chr8_4:29442683-29442702 None:intergenic 5.0%
!!! AATTGTAATTTTTTTTAATA+AGG + chr8_4:29442684-29442703 None:intergenic 5.0%
!!! ATTAAAAAAAATTACAATTT+TGG - chr8_4:29442685-29442704 Msa1322420:intron 5.0%
!! TAAAAATAAAAATTATGTAT+TGG + chr8_4:29443202-29443221 None:intergenic 5.0%
GGATTGTCCTGGTTGTAAGG+TGG - chr8_4:29438065-29438084 Msa1322420:intron 50.0%
GCTTGTTCCACCTTACAACC+AGG + chr8_4:29438075-29438094 None:intergenic 50.0%
! TCGGCCTTAGTACGGGTTTT+TGG - chr8_4:29439506-29439525 Msa1322420:intron 50.0%
GTCACGAGATTTCTTCTCGG+AGG - chr8_4:29439538-29439557 Msa1322420:CDS 50.0%
GGAGGTTTAAATGGCGTGCT+TGG - chr8_4:29439556-29439575 Msa1322420:CDS 50.0%
!! CGAGAAGAGCACCAAGCTAT+AGG - chr8_4:29439706-29439725 Msa1322420:intron 50.0%
!! AGAAGTTGATGGTGGGTGCT+GGG + chr8_4:29440027-29440046 None:intergenic 50.0%
!! GGTGGAGAGAAGTTGATGGT+GGG + chr8_4:29440034-29440053 None:intergenic 50.0%
!! AGGTGGAGAGAAGTTGATGG+TGG + chr8_4:29440035-29440054 None:intergenic 50.0%
GAGAGGTGGAGAGAAGTTGA+TGG + chr8_4:29440038-29440057 None:intergenic 50.0%
GTCGACCACGGTTATACCAT+AGG - chr8_4:29440082-29440101 Msa1322420:intron 50.0%
GAAGAATTAACGGCGGCCTA+TGG + chr8_4:29440101-29440120 None:intergenic 50.0%
GTACCACTTGTGTGCCATAG+TGG + chr8_4:29440624-29440643 None:intergenic 50.0%
ATTGTTGGCCCAGCAATAGG+AGG - chr8_4:29440664-29440683 Msa1322420:intron 50.0%
CCCAGCAATAGGAGGCTATT+TGG - chr8_4:29440672-29440691 Msa1322420:intron 50.0%
GCCAAATAGCCTCCTATTGC+TGG + chr8_4:29440676-29440695 None:intergenic 50.0%
CAGTAGCCATTGTCTGCATC+TGG - chr8_4:29441163-29441182 Msa1322420:intron 50.0%
CGGAATCCAGATGCAGACAA+TGG + chr8_4:29441172-29441191 None:intergenic 50.0%
!! CTGTTAGTCCTCTGAGGCTA+GGG - chr8_4:29441753-29441772 Msa1322420:intron 50.0%
!! TGTTAGTCCTCTGAGGCTAG+GGG - chr8_4:29441754-29441773 Msa1322420:intron 50.0%
TTCCATTAGCTGCCCCTCTT+TGG + chr8_4:29442499-29442518 None:intergenic 50.0%
ACGCCACGTGTCCCAAAAAA+GGG - chr8_4:29442736-29442755 Msa1322420:intron 50.0%
GAAGTGACCCCCCATGTTTA+GGG + chr8_4:29442843-29442862 None:intergenic 50.0%
AGAAGTGACCCCCCATGTTT+AGG + chr8_4:29442844-29442863 None:intergenic 50.0%
ACTTTCCCTTGCGTACGCAT+GGG - chr8_4:29443506-29443525 Msa1322420:intron 50.0%
ATTGACCCATGCGTACGCAA+GGG + chr8_4:29443514-29443533 None:intergenic 50.0%
AATTGACCCATGCGTACGCA+AGG + chr8_4:29443515-29443534 None:intergenic 50.0%
TGGCGTGCTTGGACCAGTTA+AGG - chr8_4:29439567-29439586 Msa1322420:CDS 55.0%
! GCAAATAAGGGTGTGCCACG+TGG - chr8_4:29439887-29439906 Msa1322420:intron 55.0%
TAGAAGGGAGGTCGCAGGTA+GGG + chr8_4:29440002-29440021 None:intergenic 55.0%
TTAGAAGGGAGGTCGCAGGT+AGG + chr8_4:29440003-29440022 None:intergenic 55.0%
!! GGTGGGTGCTGGGTTTAGAA+GGG + chr8_4:29440017-29440036 None:intergenic 55.0%
!! TGGTGGGTGCTGGGTTTAGA+AGG + chr8_4:29440018-29440037 None:intergenic 55.0%
!! GAGAAGTTGATGGTGGGTGC+TGG + chr8_4:29440028-29440047 None:intergenic 55.0%
CACACAAGTGGTACCCGCTT+GGG - chr8_4:29440630-29440649 Msa1322420:intron 55.0%
ACACAAGTGGTACCCGCTTG+GGG - chr8_4:29440631-29440650 Msa1322420:intron 55.0%
! TGTGGGCTGTTAGTCCTCTG+AGG - chr8_4:29441747-29441766 Msa1322420:intron 55.0%
!! GCTGTTAGTCCTCTGAGGCT+AGG - chr8_4:29441752-29441771 Msa1322420:intron 55.0%
!! GTTAGTCCTCTGAGGCTAGG+GGG - chr8_4:29441755-29441774 Msa1322420:intron 55.0%
TTCAAACCCCCTAGCCTCAG+AGG + chr8_4:29441764-29441783 None:intergenic 55.0%
GTGATGCGGGCCAAGACAAT+AGG + chr8_4:29441981-29442000 None:intergenic 55.0%
ATTGTCTTGGCCCGCATCAC+AGG - chr8_4:29441981-29442000 Msa1322420:CDS 55.0%
TTGTCTTGGCCCGCATCACA+GGG - chr8_4:29441982-29442001 Msa1322420:CDS 55.0%
CACCAAAGAGGGGCAGCTAA+TGG - chr8_4:29442494-29442513 Msa1322420:intron 55.0%
AAAGCTGTTGGACCTGCTGC+TGG - chr8_4:29442545-29442564 Msa1322420:intron 55.0%
CACATTGTACCACCAGCAGC+AGG + chr8_4:29442560-29442579 None:intergenic 55.0%
GACGCCACGTGTCCCAAAAA+AGG - chr8_4:29442735-29442754 Msa1322420:intron 55.0%
CGCCACGTGTCCCAAAAAAG+GGG - chr8_4:29442737-29442756 Msa1322420:intron 55.0%
CACTTTCCCTTGCGTACGCA+TGG - chr8_4:29443505-29443524 Msa1322420:intron 55.0%
AGGTTAGTGCAGCTTCGGGC+AGG - chr8_4:29439820-29439839 Msa1322420:CDS 60.0%
GGTTAGTGCAGCTTCGGGCA+GGG - chr8_4:29439821-29439840 Msa1322420:CDS 60.0%
GGTCGCAGGTAGGGAGAAAG+AGG + chr8_4:29439993-29440012 None:intergenic 60.0%
GGGTTTAGAAGGGAGGTCGC+AGG + chr8_4:29440007-29440026 None:intergenic 60.0%
!! GGGTGCTGGGTTTAGAAGGG+AGG + chr8_4:29440014-29440033 None:intergenic 60.0%
GTCGACGGTGGAGAGAAGGA+CGG + chr8_4:29440068-29440087 None:intergenic 60.0%
CTTCTCTCCACCGTCGACCA+CGG - chr8_4:29440070-29440089 Msa1322420:intron 60.0%
GGTATAACCGTGGTCGACGG+TGG + chr8_4:29440080-29440099 None:intergenic 60.0%
GGCGGCCTATGGTATAACCG+TGG + chr8_4:29440090-29440109 None:intergenic 60.0%
GCACACAAGTGGTACCCGCT+TGG - chr8_4:29440629-29440648 Msa1322420:intron 60.0%
TGTCTTGGCCCGCATCACAG+GGG - chr8_4:29441983-29442002 Msa1322420:CDS 60.0%
!!! GGCCCCTTTTTTGGGACACG+TGG + chr8_4:29442742-29442761 None:intergenic 60.0%
GACGGTGGAGAGAAGGACGG+CGG + chr8_4:29440065-29440084 None:intergenic 65.0%
CGTGGTCGACGGTGGAGAGA+AGG + chr8_4:29440072-29440091 None:intergenic 65.0%
GTGGTACCCGCTTGGGGCAT+AGG - chr8_4:29440637-29440656 Msa1322420:intron 65.0%
GCTGTTGGACCTGCTGCTGG+TGG - chr8_4:29442548-29442567 Msa1322420:intron 65.0%
AGAAGGACGGCGGCGGAGAG+AGG + chr8_4:29440055-29440074 None:intergenic 70.0%
GGTGGAGAGAAGGACGGCGG+CGG + chr8_4:29440062-29440081 None:intergenic 70.0%
AGGACGGCGGCGGAGAGAGG+TGG + chr8_4:29440052-29440071 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 29437713 29443644 29437713 ID=Msa1322420;Name=Msa1322420
chr8_4 mRNA 29437713 29443644 29437713 ID=Msa1322420-mRNA-1;Parent=Msa1322420;Name=Msa1322420-mRNA-1;_AED=0.25;_eAED=0.25;_QI=174|0.78|0.93|1|0.92|0.86|15|156|431
chr8_4 exon 29437713 29437981 29437713 ID=Msa1322420-mRNA-1:exon:9798;Parent=Msa1322420-mRNA-1
chr8_4 exon 29438788 29438869 29438788 ID=Msa1322420-mRNA-1:exon:9797;Parent=Msa1322420-mRNA-1
chr8_4 exon 29439157 29439264 29439157 ID=Msa1322420-mRNA-1:exon:9796;Parent=Msa1322420-mRNA-1
chr8_4 exon 29439353 29439438 29439353 ID=Msa1322420-mRNA-1:exon:9795;Parent=Msa1322420-mRNA-1
chr8_4 exon 29439533 29439620 29439533 ID=Msa1322420-mRNA-1:exon:9794;Parent=Msa1322420-mRNA-1
chr8_4 exon 29439720 29439899 29439720 ID=Msa1322420-mRNA-1:exon:9793;Parent=Msa1322420-mRNA-1
chr8_4 exon 29440166 29440241 29440166 ID=Msa1322420-mRNA-1:exon:9792;Parent=Msa1322420-mRNA-1
chr8_4 exon 29440351 29440400 29440351 ID=Msa1322420-mRNA-1:exon:9791;Parent=Msa1322420-mRNA-1
chr8_4 exon 29441619 29441672 29441619 ID=Msa1322420-mRNA-1:exon:9790;Parent=Msa1322420-mRNA-1
chr8_4 exon 29441769 29441871 29441769 ID=Msa1322420-mRNA-1:exon:9789;Parent=Msa1322420-mRNA-1
chr8_4 exon 29441961 29442063 29441961 ID=Msa1322420-mRNA-1:exon:9788;Parent=Msa1322420-mRNA-1
chr8_4 exon 29442150 29442210 29442150 ID=Msa1322420-mRNA-1:exon:9787;Parent=Msa1322420-mRNA-1
chr8_4 exon 29442908 29442948 29442908 ID=Msa1322420-mRNA-1:exon:9786;Parent=Msa1322420-mRNA-1
chr8_4 exon 29443195 29443388 29443195 ID=Msa1322420-mRNA-1:exon:9785;Parent=Msa1322420-mRNA-1
chr8_4 exon 29443514 29443644 29443514 ID=Msa1322420-mRNA-1:exon:9784;Parent=Msa1322420-mRNA-1
chr8_4 five_prime_UTR 29443514 29443644 29443514 ID=Msa1322420-mRNA-1:five_prime_utr;Parent=Msa1322420-mRNA-1
chr8_4 five_prime_UTR 29443346 29443388 29443346 ID=Msa1322420-mRNA-1:five_prime_utr;Parent=Msa1322420-mRNA-1
chr8_4 CDS 29443195 29443345 29443195 ID=Msa1322420-mRNA-1:cds;Parent=Msa1322420-mRNA-1
chr8_4 CDS 29442908 29442948 29442908 ID=Msa1322420-mRNA-1:cds;Parent=Msa1322420-mRNA-1
chr8_4 CDS 29442150 29442210 29442150 ID=Msa1322420-mRNA-1:cds;Parent=Msa1322420-mRNA-1
chr8_4 CDS 29441961 29442063 29441961 ID=Msa1322420-mRNA-1:cds;Parent=Msa1322420-mRNA-1
chr8_4 CDS 29441769 29441871 29441769 ID=Msa1322420-mRNA-1:cds;Parent=Msa1322420-mRNA-1
chr8_4 CDS 29441619 29441672 29441619 ID=Msa1322420-mRNA-1:cds;Parent=Msa1322420-mRNA-1
chr8_4 CDS 29440351 29440400 29440351 ID=Msa1322420-mRNA-1:cds;Parent=Msa1322420-mRNA-1
chr8_4 CDS 29440166 29440241 29440166 ID=Msa1322420-mRNA-1:cds;Parent=Msa1322420-mRNA-1
chr8_4 CDS 29439720 29439899 29439720 ID=Msa1322420-mRNA-1:cds;Parent=Msa1322420-mRNA-1
chr8_4 CDS 29439533 29439620 29439533 ID=Msa1322420-mRNA-1:cds;Parent=Msa1322420-mRNA-1
chr8_4 CDS 29439353 29439438 29439353 ID=Msa1322420-mRNA-1:cds;Parent=Msa1322420-mRNA-1
chr8_4 CDS 29439157 29439264 29439157 ID=Msa1322420-mRNA-1:cds;Parent=Msa1322420-mRNA-1
chr8_4 CDS 29438788 29438869 29438788 ID=Msa1322420-mRNA-1:cds;Parent=Msa1322420-mRNA-1
chr8_4 CDS 29437869 29437981 29437869 ID=Msa1322420-mRNA-1:cds;Parent=Msa1322420-mRNA-1
chr8_4 three_prime_UTR 29437713 29437868 29437713 ID=Msa1322420-mRNA-1:three_prime_utr;Parent=Msa1322420-mRNA-1
Gene Sequence

>Msa1322420

ATGGAGGAGGAGCATATGAGAGAGCCATTGTTGGAGAAGAAGCAATACTATGAGGATTGTCCTGGTTGTAAGGTGGAACAAGCAAATGAGCTTAATGAAGGTGTATCCATTATAAAACTTTTGATTATATGGATGGTGGTTTTATCTGCAACTCTTCCTACATCATCTCTCTTTCCCTTCCTTTATTTCATGGTAAGGGACTTCAATATTGCAGCAGAAGAAGCTGATATTAGTTACTATGCTGGTTATATTGGATCTTCATACATGCTTGGAAGATGTTTCACAGCTGTATTATGGGGAATGGTTTCAGATCGCTATGGTCGAAAACCTGTATTAATAATGGGGATTATCGCAGTTGTCATTTTCAACACATTATTCGGCCTTAGTACGGGTTTTTGGATGGCTATTGTCACGAGATTTCTTCTCGGAGGTTTAAATGGCGTGCTTGGACCAGTTAAGGCCTATGCTACTGAACTTTTTCGAGAAGAGCACCAAGCTATAGGACTTTCTACCCCTGTAGACAAATATCCACAAATATTTCCAAAAGACTCCTTTTGGGATAAGTTCCCATACTTCTTGCCCTGCTTTACAATATCAGCACTTGCACTTACAGTAGCCATTGTCTGCATCTGGATTCCGGAAACACTTCACAATCACAATGGTAGCGAAGAGTTCAAAGGTGATGCCGAAGCTTTAGAAAATGGAAGCAGCAAAGAAAAGACAGTCCAAAAGAATGAAAACCTCTTCATGAATTGGCCTTTAATGTCATCTATCATTGCTTATTGCGTCGTCTCACTTCATGATATTGCTTATCAAGAGGTTTTCTCATTGTGGGCTGTTAGTCCTCTGAGGCTAGGGGGTTTGAAGTTTACAACTGATGATGTTGGTGATGTTCTTTCAATTTCAGGAGTTGCACTATGCATCTACCAACTTTTCATATATCCATATGTGGAAAAAGCTTGTGGACCTATTGTCTTGGCCCGCATCACAGGGATTATTTCCATACCACTTTTGCAAAGTTACCCCTTCATAGCAATGTTATCAGGAATAACCTTATACATTGTGATTAGTATTGCTTCCATCCTTAAGAATGTTATTGCTGAACAACACCAAAGAGGGGCAGCTAATGGAATTTCTATGACAGCAATGTCTCTATTCAAAGCTGTTGGACCTGCTGCTGGTGGAACTCAAATGGTGTTTTTCTTCCTTAATTTAGTTGAAGGACTTGGAATACTTTTGATGTGTAAACCATTTCTTGGTGAAAAGAAGAAAACAAATTCACACGAGTTACATTGA

Protein sequence

>Msa1322420

MEEEHMREPLLEKKQYYEDCPGCKVEQANELNEGVSIIKLLIIWMVVLSATLPTSSLFPFLYFMVRDFNIAAEEADISYYAGYIGSSYMLGRCFTAVLWGMVSDRYGRKPVLIMGIIAVVIFNTLFGLSTGFWMAIVTRFLLGGLNGVLGPVKAYATELFREEHQAIGLSTPVDKYPQIFPKDSFWDKFPYFLPCFTISALALTVAIVCIWIPETLHNHNGSEEFKGDAEALENGSSKEKTVQKNENLFMNWPLMSSIIAYCVVSLHDIAYQEVFSLWAVSPLRLGGLKFTTDDVGDVLSISGVALCIYQLFIYPYVEKACGPIVLARITGIISIPLLQSYPFIAMLSGITLYIVISIASILKNVIAEQHQRGAANGISMTAMSLFKAVGPAAGGTQMVFFFLNLVEGLGILLMCKPFLGEKKKTNSHELH*