Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407120 | GAU40858.1 | 76.974 | 152 | 13 | 1 | 83 | 212 | 4 | 155 | 2.02e-77 | 243 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407120 | sp|Q9FZ62|PPSP2_ARATH | 61.842 | 152 | 36 | 1 | 83 | 212 | 6 | 157 | 1.02e-61 | 196 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407120 | A0A2Z6N7P3 | 76.974 | 152 | 13 | 1 | 83 | 212 | 4 | 155 | 9.66e-78 | 243 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa1407120 | 0.803063 | 4.168537e-49 | -8.615850e-47 |
| Msa1407120 | Msa1451620 | -0.802429 | 5.634372e-49 | -8.615850e-47 |
| Msa0657970 | Msa1407120 | 0.811970 | 5.362056e-51 | -8.615850e-47 |
| Msa0693380 | Msa1407120 | 0.802218 | 6.225458e-49 | -8.615850e-47 |
| Msa0157290 | Msa1407120 | 0.802379 | 5.769055e-49 | -8.615850e-47 |
| Msa1082500 | Msa1407120 | 0.817689 | 2.895357e-52 | -8.615850e-47 |
| Msa0258760 | Msa1407120 | 0.805395 | 1.363164e-49 | -8.615850e-47 |
| Msa0484780 | Msa1407120 | 0.808006 | 3.829096e-50 | -8.615850e-47 |
| Msa0512900 | Msa1407120 | 0.814296 | 1.655801e-51 | -8.615850e-47 |
| Msa0880140 | Msa1407120 | 0.801659 | 8.111990e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407120 | MtrunA17_Chr2g0330511 | 77.778 | 153 | 11 | 2 | 82 | 212 | 2 | 153 | 3.04e-80 | 240 |
| Msa1407120 | MtrunA17_Chr2g0309111 | 72.903 | 155 | 20 | 1 | 80 | 212 | 44 | 198 | 1.19e-76 | 233 |
| Msa1407120 | MtrunA17_Chr8g0341721 | 67.105 | 152 | 28 | 1 | 83 | 212 | 4 | 155 | 1.92e-71 | 218 |
| Msa1407120 | MtrunA17_Chr8g0341701 | 67.763 | 152 | 27 | 1 | 83 | 212 | 4 | 155 | 5.86e-70 | 214 |
| Msa1407120 | MtrunA17_Chr8g0341731 | 62.745 | 153 | 34 | 2 | 83 | 212 | 4 | 156 | 1.68e-66 | 206 |
| Msa1407120 | MtrunA17_Chr8g0341741 | 62.745 | 153 | 34 | 2 | 83 | 212 | 4 | 156 | 1.92e-65 | 203 |
| Msa1407120 | MtrunA17_Chr2g0330491 | 53.595 | 153 | 49 | 1 | 82 | 212 | 2 | 154 | 1.29e-53 | 172 |
| Msa1407120 | MtrunA17_Chr8g0389271 | 53.595 | 153 | 47 | 4 | 84 | 212 | 2 | 154 | 1.60e-48 | 158 |
| Msa1407120 | MtrunA17_Chr3g0134051 | 45.570 | 79 | 43 | 0 | 4 | 82 | 91 | 169 | 7.03e-13 | 64.3 |
| Msa1407120 | MtrunA17_Chr6g0480701 | 44.872 | 78 | 43 | 0 | 4 | 81 | 711 | 788 | 8.07e-13 | 66.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407120 | AT1G17710.1 | 61.842 | 152 | 36 | 1 | 83 | 212 | 6 | 157 | 1.04e-62 | 196 |
| Msa1407120 | AT1G73010.1 | 62.092 | 153 | 34 | 2 | 84 | 212 | 14 | 166 | 1.63e-62 | 196 |
| Msa1407120 | AT4G29530.1 | 52.941 | 153 | 50 | 2 | 82 | 212 | 2 | 154 | 1.37e-50 | 164 |
| Msa1407120 | AT1G17710.2 | 52.778 | 108 | 29 | 1 | 127 | 212 | 18 | 125 | 1.48e-31 | 115 |
| Msa1407120 | AT4G29530.2 | 51.852 | 108 | 30 | 2 | 127 | 212 | 36 | 143 | 3.45e-28 | 106 |
Find 45 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACTTCCACAATGTCTTTAA+TGG | 0.174330 | tig0023257:-91501 | None:intergenic |
| TTCTAGAGCACTTTGGAATT+AGG | 0.208027 | tig0023257:+91745 | Msa1407120:CDS |
| TCTAGAGCACTTTGGAATTA+GGG | 0.274154 | tig0023257:+91746 | Msa1407120:CDS |
| ATCACTGTCACATTCAACTA+TGG | 0.343409 | tig0023257:-90682 | None:intergenic |
| TAACTGGGTTGTTGATGAAT+TGG | 0.370937 | tig0023257:+90704 | Msa1407120:CDS |
| TAACCATCACATTGGTTTGA+TGG | 0.376446 | tig0023257:-89962 | None:intergenic |
| AACTGGGTTGTTGATGAATT+GGG | 0.392070 | tig0023257:+90705 | Msa1407120:CDS |
| TTGAATGTGACAGTGATAAC+TGG | 0.395709 | tig0023257:+90688 | Msa1407120:CDS |
| ATACGCACCTTGCACATGTT+TGG | 0.398432 | tig0023257:-91882 | None:intergenic |
| ATGATGGAGCTTCATTCTAA+TGG | 0.400881 | tig0023257:+91474 | Msa1407120:CDS |
| CCTTCTTCATCAACATAACC+TGG | 0.425623 | tig0023257:-91795 | None:intergenic |
| AACCATCACATTGGTTTGAT+GGG | 0.425759 | tig0023257:-89961 | None:intergenic |
| TTTATAGGATAGGATGATGA+TGG | 0.429720 | tig0023257:+91458 | Msa1407120:intron |
| TCAGAGATTAACACTAATCC+AGG | 0.467147 | tig0023257:+91777 | Msa1407120:CDS |
| GAACCAATGTGCAAGTTTCA+TGG | 0.469051 | tig0023257:+90004 | Msa1407120:CDS |
| TCGGATGAACAAAGTGTCAT+TGG | 0.473615 | tig0023257:-90111 | None:intergenic |
| TATTATGGCTAGTATTGTTG+TGG | 0.486243 | tig0023257:+90641 | Msa1407120:intron |
| CGCACCTTGCACATGTTTGG+AGG | 0.489361 | tig0023257:-91879 | None:intergenic |
| AGAAGATTGATAAGACTGGC+AGG | 0.499503 | tig0023257:-90077 | None:intergenic |
| CCAGGTTATGTTGATGAAGA+AGG | 0.507815 | tig0023257:+91795 | Msa1407120:CDS |
| GAGACAATTCTAGAGCACTT+TGG | 0.511273 | tig0023257:+91738 | Msa1407120:CDS |
| GAGGAGGCTTATTGAGATCA+TGG | 0.513521 | tig0023257:-91839 | None:intergenic |
| TATGAGAAGATTGATAAGAC+TGG | 0.540383 | tig0023257:-90081 | None:intergenic |
| AACTTGTTCCCACCATGCCA+TGG | 0.561111 | tig0023257:+90748 | Msa1407120:CDS |
| CATGAGATTGTTCCATGGCA+TGG | 0.577635 | tig0023257:-90760 | None:intergenic |
| ACGAAAAGGCTAACTTAACT+CGG | 0.586281 | tig0023257:-90130 | None:intergenic |
| TTACCATGAAACTTGCACAT+TGG | 0.589613 | tig0023257:-90007 | None:intergenic |
| GAAAACCATTAAAGACATTG+TGG | 0.590646 | tig0023257:+91496 | Msa1407120:CDS |
| ACCATCACATTGGTTTGATG+GGG | 0.602541 | tig0023257:-89960 | None:intergenic |
| GCCCCATCAAACCAATGTGA+TGG | 0.604708 | tig0023257:+89959 | Msa1407120:CDS |
| GTTATGTTGATGAAGAAGGA+AGG | 0.606768 | tig0023257:+91799 | Msa1407120:CDS |
| GGCTTATTGAGATCATGGTA+AGG | 0.607600 | tig0023257:-91834 | None:intergenic |
| GTTAGTCACACTCTTAGAGA+GGG | 0.612863 | tig0023257:+89981 | Msa1407120:CDS |
| AGATTGTTCCATGGCATGGT+GGG | 0.618496 | tig0023257:-90756 | None:intergenic |
| CTTACCATGAGATTGTTCCA+TGG | 0.621753 | tig0023257:-90765 | None:intergenic |
| CATGCCATGGAACAATCTCA+TGG | 0.631759 | tig0023257:+90761 | Msa1407120:CDS |
| GGTTAGTCACACTCTTAGAG+AGG | 0.637052 | tig0023257:+89980 | Msa1407120:CDS |
| GAAGATTGATAAGACTGGCA+GGG | 0.647569 | tig0023257:-90076 | None:intergenic |
| AGTGTGACTAACCATCACAT+TGG | 0.658318 | tig0023257:-89970 | None:intergenic |
| CACAGATTACATCTGTGAGG+AGG | 0.674754 | tig0023257:-91855 | None:intergenic |
| GTGTCCTCCAAACATGTGCA+AGG | 0.682508 | tig0023257:+91875 | Msa1407120:CDS |
| GAGATTGTTCCATGGCATGG+TGG | 0.684870 | tig0023257:-90757 | None:intergenic |
| TGAATGTGACAGTGATAACT+GGG | 0.689812 | tig0023257:+90689 | Msa1407120:CDS |
| TTAGTCACACTCTTAGAGAG+GGG | 0.716545 | tig0023257:+89982 | Msa1407120:CDS |
| GGACACAGATTACATCTGTG+AGG | 0.733835 | tig0023257:-91858 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTTTATTTTTTTTTAT+AGG | + | tig0023257:91443-91462 | Msa1407120:intron | 0.0% |
| !!! | TTTATTTTATTTTTTTTTAT+AGG | + | tig0023257:91443-91462 | Msa1407120:intron | 0.0% |
| !!! | TGAAAATTGAAAATTTTATA+GGG | - | tig0023257:90969-90988 | None:intergenic | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | - | tig0023257:91053-91072 | None:intergenic | 10.0% |
| !!! | AAAAAATTCTAATTTTTTTC+AGG | + | tig0023257:91177-91196 | Msa1407120:intron | 10.0% |
| !!! | TTTATTTTTTTTTATAGGAT+AGG | + | tig0023257:91448-91467 | Msa1407120:intron | 10.0% |
| !!! | AAAATTATACTTTTTTAACA+TGG | + | tig0023257:91646-91665 | Msa1407120:intron | 10.0% |
| !!! | ATTTTGTAATTTTATTTTTC+AGG | + | tig0023257:91673-91692 | Msa1407120:intron | 10.0% |
| !!! | TGAAAATTGAAAATTTTATA+GGG | - | tig0023257:90969-90988 | None:intergenic | 10.0% |
| !!! | TATAATATTTTGAATTTTTC+TGG | - | tig0023257:91053-91072 | None:intergenic | 10.0% |
| !!! | AAAAAATTCTAATTTTTTTC+AGG | + | tig0023257:91177-91196 | Msa1407120:intron | 10.0% |
| !!! | TTTATTTTTTTTTATAGGAT+AGG | + | tig0023257:91448-91467 | Msa1407120:intron | 10.0% |
| !!! | AAAATTATACTTTTTTAACA+TGG | + | tig0023257:91646-91665 | Msa1407120:intron | 10.0% |
| !!! | ATTTTGTAATTTTATTTTTC+AGG | + | tig0023257:91673-91692 | Msa1407120:intron | 10.0% |
| !!! | AATATGCTATATTTTTGATT+TGG | - | tig0023257:90189-90208 | None:intergenic | 15.0% |
| !!! | TTTTTTCAATGATATATCTT+TGG | + | tig0023257:90865-90884 | Msa1407120:intron | 15.0% |
| !!! | TTTTTCAATGATATATCTTT+GGG | + | tig0023257:90866-90885 | Msa1407120:intron | 15.0% |
| !!! | GTGAAAATTGAAAATTTTAT+AGG | - | tig0023257:90970-90989 | None:intergenic | 15.0% |
| !!! | AAATTTTCAATTTTCACTTT+TGG | + | tig0023257:90973-90992 | Msa1407120:intron | 15.0% |
| !!! | CATAAATTAAGTTGAAAATA+AGG | + | tig0023257:91251-91270 | Msa1407120:intron | 15.0% |
| !!! | ACTATAACATTTTTTTTCAT+AGG | - | tig0023257:91618-91637 | None:intergenic | 15.0% |
| !!! | AATATGCTATATTTTTGATT+TGG | - | tig0023257:90189-90208 | None:intergenic | 15.0% |
| !!! | TTTTTTCAATGATATATCTT+TGG | + | tig0023257:90865-90884 | Msa1407120:intron | 15.0% |
| !!! | TTTTTCAATGATATATCTTT+GGG | + | tig0023257:90866-90885 | Msa1407120:intron | 15.0% |
| !!! | GTGAAAATTGAAAATTTTAT+AGG | - | tig0023257:90970-90989 | None:intergenic | 15.0% |
| !!! | AAATTTTCAATTTTCACTTT+TGG | + | tig0023257:90973-90992 | Msa1407120:intron | 15.0% |
| !!! | CATAAATTAAGTTGAAAATA+AGG | + | tig0023257:91251-91270 | Msa1407120:intron | 15.0% |
| !!! | ACTATAACATTTTTTTTCAT+AGG | - | tig0023257:91618-91637 | None:intergenic | 15.0% |
| !! | TATTTATAGTGAACAATACA+AGG | - | tig0023257:90492-90511 | None:intergenic | 20.0% |
| !! | CTAACATTTAAGAAATGAAA+GGG | - | tig0023257:90515-90534 | None:intergenic | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | - | tig0023257:91342-91361 | None:intergenic | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | - | tig0023257:91000-91019 | None:intergenic | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | - | tig0023257:91001-91020 | None:intergenic | 20.0% |
| !!! | TAGTGATTGAAAGTTTTATA+GGG | + | tig0023257:91282-91301 | Msa1407120:intron | 20.0% |
| !!! | TAAAATTTTCCTTCAACTTT+TGG | - | tig0023257:90942-90961 | None:intergenic | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | + | tig0023257:91342-91361 | Msa1407120:intron | 20.0% |
| !!! | TATAGGGTTAAATATGTTTT+TGG | - | tig0023257:91369-91388 | None:intergenic | 20.0% |
| !! | TCATAGGAAACAAAAATAAA+TGG | - | tig0023257:91602-91621 | None:intergenic | 20.0% |
| !! | TATTTATAGTGAACAATACA+AGG | - | tig0023257:90492-90511 | None:intergenic | 20.0% |
| !! | CTAACATTTAAGAAATGAAA+GGG | - | tig0023257:90515-90534 | None:intergenic | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | - | tig0023257:91342-91361 | None:intergenic | 20.0% |
| !!! | TATGAGTTTACTTTAAAAGA+GGG | - | tig0023257:91000-91019 | None:intergenic | 20.0% |
| !!! | ATATGAGTTTACTTTAAAAG+AGG | - | tig0023257:91001-91020 | None:intergenic | 20.0% |
| !!! | TAGTGATTGAAAGTTTTATA+GGG | + | tig0023257:91282-91301 | Msa1407120:intron | 20.0% |
| !!! | TAAAATTTTCCTTCAACTTT+TGG | - | tig0023257:90942-90961 | None:intergenic | 20.0% |
| !! | GAAAAGTTGACATATTTATA+GGG | + | tig0023257:91342-91361 | Msa1407120:intron | 20.0% |
| !!! | TATAGGGTTAAATATGTTTT+TGG | - | tig0023257:91369-91388 | None:intergenic | 20.0% |
| !! | TCATAGGAAACAAAAATAAA+TGG | - | tig0023257:91602-91621 | None:intergenic | 20.0% |
| ! | AAACAACAAAACAAACGAAA+AGG | - | tig0023257:90147-90166 | None:intergenic | 25.0% |
| !! | GATTTGGTTACAATGATAAA+TGG | - | tig0023257:90173-90192 | None:intergenic | 25.0% |
| ! | TTAAATACGAATTAGAACGT+AGG | + | tig0023257:90223-90242 | Msa1407120:intron | 25.0% |
| ! | TGAAAAAAAGAATATTCGAG+GGG | - | tig0023257:90311-90330 | None:intergenic | 25.0% |
| ! | GTGAAAAAAAGAATATTCGA+GGG | - | tig0023257:90312-90331 | None:intergenic | 25.0% |
| ! | TGTGAAAAAAAGAATATTCG+AGG | - | tig0023257:90313-90332 | None:intergenic | 25.0% |
| ! | TTAAATTGAATTACAACCGT+TGG | - | tig0023257:90381-90400 | None:intergenic | 25.0% |
| ! | CTAACTCAAAAAAACAACAA+AGG | - | tig0023257:90455-90474 | None:intergenic | 25.0% |
| !!! | CTTTGTTGTTTTTTTGAGTT+AGG | + | tig0023257:90453-90472 | Msa1407120:intron | 25.0% |
| ! | GCTAACATTTAAGAAATGAA+AGG | - | tig0023257:90516-90535 | None:intergenic | 25.0% |
| !!! | GCTCTCAAAATTGTATTTTT+TGG | - | tig0023257:90544-90563 | None:intergenic | 25.0% |
| ! | TCAAGAATTTGATTCCAATT+GGG | - | tig0023257:90578-90597 | None:intergenic | 25.0% |
| !!! | CTTTGGGTTAAATATGTTTT+TGG | + | tig0023257:90882-90901 | Msa1407120:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | - | tig0023257:91341-91360 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | tig0023257:91311-91330 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | tig0023257:91310-91329 | None:intergenic | 25.0% |
| ! | TTATAGGGATTAAAAGTTGA+AGG | - | tig0023257:90954-90973 | None:intergenic | 25.0% |
| !! | AAACTTTCAATCACTACTTT+TGG | - | tig0023257:91278-91297 | None:intergenic | 25.0% |
| !!! | GTAGTGATTGAAAGTTTTAT+AGG | + | tig0023257:91281-91300 | Msa1407120:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | tig0023257:91310-91329 | Msa1407120:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | tig0023257:91311-91330 | Msa1407120:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | + | tig0023257:91341-91360 | Msa1407120:intron | 25.0% |
| ! | AAACAACAAAACAAACGAAA+AGG | - | tig0023257:90147-90166 | None:intergenic | 25.0% |
| !! | GATTTGGTTACAATGATAAA+TGG | - | tig0023257:90173-90192 | None:intergenic | 25.0% |
| ! | TTAAATACGAATTAGAACGT+AGG | + | tig0023257:90223-90242 | Msa1407120:intron | 25.0% |
| ! | TGAAAAAAAGAATATTCGAG+GGG | - | tig0023257:90311-90330 | None:intergenic | 25.0% |
| ! | GTGAAAAAAAGAATATTCGA+GGG | - | tig0023257:90312-90331 | None:intergenic | 25.0% |
| ! | TGTGAAAAAAAGAATATTCG+AGG | - | tig0023257:90313-90332 | None:intergenic | 25.0% |
| ! | TTAAATTGAATTACAACCGT+TGG | - | tig0023257:90381-90400 | None:intergenic | 25.0% |
| ! | CTAACTCAAAAAAACAACAA+AGG | - | tig0023257:90455-90474 | None:intergenic | 25.0% |
| !!! | CTTTGTTGTTTTTTTGAGTT+AGG | + | tig0023257:90453-90472 | Msa1407120:intron | 25.0% |
| ! | GCTAACATTTAAGAAATGAA+AGG | - | tig0023257:90516-90535 | None:intergenic | 25.0% |
| !!! | GCTCTCAAAATTGTATTTTT+TGG | - | tig0023257:90544-90563 | None:intergenic | 25.0% |
| ! | TCAAGAATTTGATTCCAATT+GGG | - | tig0023257:90578-90597 | None:intergenic | 25.0% |
| !!! | CTTTGGGTTAAATATGTTTT+TGG | + | tig0023257:90882-90901 | Msa1407120:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | - | tig0023257:91341-91360 | None:intergenic | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | - | tig0023257:91311-91330 | None:intergenic | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | - | tig0023257:91310-91329 | None:intergenic | 25.0% |
| ! | TTATAGGGATTAAAAGTTGA+AGG | - | tig0023257:90954-90973 | None:intergenic | 25.0% |
| !! | AAACTTTCAATCACTACTTT+TGG | - | tig0023257:91278-91297 | None:intergenic | 25.0% |
| !!! | GTAGTGATTGAAAGTTTTAT+AGG | + | tig0023257:91281-91300 | Msa1407120:intron | 25.0% |
| !! | AAGTTGAAGGAAAATTTTAG+AGG | + | tig0023257:91310-91329 | Msa1407120:intron | 25.0% |
| !! | AGTTGAAGGAAAATTTTAGA+GGG | + | tig0023257:91311-91330 | Msa1407120:intron | 25.0% |
| ! | CGAAAAGTTGACATATTTAT+AGG | + | tig0023257:91341-91360 | Msa1407120:intron | 25.0% |
| TATGAGAAGATTGATAAGAC+TGG | - | tig0023257:90084-90103 | None:intergenic | 30.0% | |
| ! | ATGGAAGTGGATTTCATATA+TGG | + | tig0023257:90265-90284 | Msa1407120:intron | 30.0% |
| GGGAATTTATTTAGTGTAGT+TGG | - | tig0023257:90291-90310 | None:intergenic | 30.0% | |
| TAGTTTGGTCAAGTAATAGA+GGG | - | tig0023257:90345-90364 | None:intergenic | 30.0% | |
| ! | TTAGTTTGGTCAAGTAATAG+AGG | - | tig0023257:90346-90365 | None:intergenic | 30.0% |
| GGATTTGATGAACTTTAGTT+TGG | - | tig0023257:90360-90379 | None:intergenic | 30.0% | |
| CTAAAGTTCATCAAATCCAA+CGG | + | tig0023257:90362-90381 | Msa1407120:intron | 30.0% | |
| CAATGGGATATTACAATTTG+TGG | - | tig0023257:90417-90436 | None:intergenic | 30.0% | |
| CACAAATTGTAATATCCCAT+TGG | + | tig0023257:90415-90434 | Msa1407120:intron | 30.0% | |
| TTGTAATATCCCATTGGAAT+TGG | + | tig0023257:90421-90440 | Msa1407120:intron | 30.0% | |
| !!! | GTTTTGATTCCAATTCCAAT+GGG | - | tig0023257:90433-90452 | None:intergenic | 30.0% |
| !!! | TTTTTTTGAGTTAGGCTTCA+CGG | + | tig0023257:90461-90480 | Msa1407120:intron | 30.0% |
| CTCAAGAATTTGATTCCAAT+TGG | - | tig0023257:90579-90598 | None:intergenic | 30.0% | |
| TATTATGGCTAGTATTGTTG+TGG | + | tig0023257:90641-90660 | Msa1407120:intron | 30.0% | |
| TTAGAGGGACAAAAGATATA+GGG | - | tig0023257:91385-91404 | None:intergenic | 30.0% | |
| TTTATAGGATAGGATGATGA+TGG | + | tig0023257:91458-91477 | Msa1407120:intron | 30.0% | |
| GAAAACCATTAAAGACATTG+TGG | + | tig0023257:91496-91515 | Msa1407120:CDS | 30.0% | |
| AACTTCCACAATGTCTTTAA+TGG | - | tig0023257:91504-91523 | None:intergenic | 30.0% | |
| ! | TAAAGACATTGTGGAAGTTT+TGG | + | tig0023257:91505-91524 | Msa1407120:intron | 30.0% |
| ATATGAATACCCTAAAGCAT+TGG | - | tig0023257:91576-91595 | None:intergenic | 30.0% | |
| !!! | TATTTTTCAGGTGTGATTTG+AGG | + | tig0023257:91685-91704 | Msa1407120:intron | 30.0% |
| TATGAGAAGATTGATAAGAC+TGG | - | tig0023257:90084-90103 | None:intergenic | 30.0% | |
| ! | ATGGAAGTGGATTTCATATA+TGG | + | tig0023257:90265-90284 | Msa1407120:intron | 30.0% |
| GGGAATTTATTTAGTGTAGT+TGG | - | tig0023257:90291-90310 | None:intergenic | 30.0% | |
| TAGTTTGGTCAAGTAATAGA+GGG | - | tig0023257:90345-90364 | None:intergenic | 30.0% | |
| ! | TTAGTTTGGTCAAGTAATAG+AGG | - | tig0023257:90346-90365 | None:intergenic | 30.0% |
| GGATTTGATGAACTTTAGTT+TGG | - | tig0023257:90360-90379 | None:intergenic | 30.0% | |
| CTAAAGTTCATCAAATCCAA+CGG | + | tig0023257:90362-90381 | Msa1407120:intron | 30.0% | |
| CAATGGGATATTACAATTTG+TGG | - | tig0023257:90417-90436 | None:intergenic | 30.0% | |
| CACAAATTGTAATATCCCAT+TGG | + | tig0023257:90415-90434 | Msa1407120:intron | 30.0% | |
| TTGTAATATCCCATTGGAAT+TGG | + | tig0023257:90421-90440 | Msa1407120:intron | 30.0% | |
| !!! | GTTTTGATTCCAATTCCAAT+GGG | - | tig0023257:90433-90452 | None:intergenic | 30.0% |
| !!! | TTTTTTTGAGTTAGGCTTCA+CGG | + | tig0023257:90461-90480 | Msa1407120:intron | 30.0% |
| CTCAAGAATTTGATTCCAAT+TGG | - | tig0023257:90579-90598 | None:intergenic | 30.0% | |
| TATTATGGCTAGTATTGTTG+TGG | + | tig0023257:90641-90660 | Msa1407120:intron | 30.0% | |
| TTAGAGGGACAAAAGATATA+GGG | - | tig0023257:91385-91404 | None:intergenic | 30.0% | |
| TTTATAGGATAGGATGATGA+TGG | + | tig0023257:91458-91477 | Msa1407120:intron | 30.0% | |
| GAAAACCATTAAAGACATTG+TGG | + | tig0023257:91496-91515 | Msa1407120:CDS | 30.0% | |
| AACTTCCACAATGTCTTTAA+TGG | - | tig0023257:91504-91523 | None:intergenic | 30.0% | |
| ! | TAAAGACATTGTGGAAGTTT+TGG | + | tig0023257:91505-91524 | Msa1407120:intron | 30.0% |
| ATATGAATACCCTAAAGCAT+TGG | - | tig0023257:91576-91595 | None:intergenic | 30.0% | |
| !!! | TATTTTTCAGGTGTGATTTG+AGG | + | tig0023257:91685-91704 | Msa1407120:intron | 30.0% |
| !! | GGGGCAATTGTTTTATATCT+TGG | - | tig0023257:89944-89963 | None:intergenic | 35.0% |
| !! | AACCATCACATTGGTTTGAT+GGG | - | tig0023257:89964-89983 | None:intergenic | 35.0% |
| !! | TAACCATCACATTGGTTTGA+TGG | - | tig0023257:89965-89984 | None:intergenic | 35.0% |
| TTACCATGAAACTTGCACAT+TGG | - | tig0023257:90010-90029 | None:intergenic | 35.0% | |
| ACGAAAAGGCTAACTTAACT+CGG | - | tig0023257:90133-90152 | None:intergenic | 35.0% | |
| AATACGAATTAGAACGTAGG+TGG | + | tig0023257:90226-90245 | Msa1407120:intron | 35.0% | |
| TGGAATATTCCTCTAGACAA+TGG | + | tig0023257:90246-90265 | Msa1407120:intron | 35.0% | |
| !!! | GGTTTTGATTCCAATTCCAA+TGG | - | tig0023257:90434-90453 | None:intergenic | 35.0% |
| AGCAGTTTCAAATACCCAAT+TGG | + | tig0023257:90561-90580 | Msa1407120:intron | 35.0% | |
| CACTCTCTTTGTCACTATTA+TGG | + | tig0023257:90626-90645 | Msa1407120:intron | 35.0% | |
| ATCACTGTCACATTCAACTA+TGG | - | tig0023257:90685-90704 | None:intergenic | 35.0% | |
| TTGAATGTGACAGTGATAAC+TGG | + | tig0023257:90688-90707 | Msa1407120:CDS | 35.0% | |
| TGAATGTGACAGTGATAACT+GGG | + | tig0023257:90689-90708 | Msa1407120:CDS | 35.0% | |
| ! | TAACTGGGTTGTTGATGAAT+TGG | + | tig0023257:90704-90723 | Msa1407120:CDS | 35.0% |
| ! | AACTGGGTTGTTGATGAATT+GGG | + | tig0023257:90705-90724 | Msa1407120:CDS | 35.0% |
| TTATAGGGACCAAAAGTTGA+AGG | + | tig0023257:91297-91316 | Msa1407120:intron | 35.0% | |
| GTTAGAGGGACAAAAGATAT+AGG | - | tig0023257:91386-91405 | None:intergenic | 35.0% | |
| ! | ATGATGGAGCTTCATTCTAA+TGG | + | tig0023257:91474-91493 | Msa1407120:CDS | 35.0% |
| !! | TAAAGCATTGGCTGCTTTAA+TGG | - | tig0023257:91564-91583 | None:intergenic | 35.0% |
| ATTAAAGCAGCCAATGCTTT+AGG | + | tig0023257:91563-91582 | Msa1407120:intron | 35.0% | |
| TTAAAGCAGCCAATGCTTTA+GGG | + | tig0023257:91564-91583 | Msa1407120:intron | 35.0% | |
| !! | TTCTAGAGCACTTTGGAATT+AGG | + | tig0023257:91745-91764 | Msa1407120:CDS | 35.0% |
| !! | TCTAGAGCACTTTGGAATTA+GGG | + | tig0023257:91746-91765 | Msa1407120:CDS | 35.0% |
| TCAGAGATTAACACTAATCC+AGG | + | tig0023257:91777-91796 | Msa1407120:CDS | 35.0% | |
| ! | GTTATGTTGATGAAGAAGGA+AGG | + | tig0023257:91799-91818 | Msa1407120:CDS | 35.0% |
| !! | GGGGCAATTGTTTTATATCT+TGG | - | tig0023257:89944-89963 | None:intergenic | 35.0% |
| !! | AACCATCACATTGGTTTGAT+GGG | - | tig0023257:89964-89983 | None:intergenic | 35.0% |
| !! | TAACCATCACATTGGTTTGA+TGG | - | tig0023257:89965-89984 | None:intergenic | 35.0% |
| TTACCATGAAACTTGCACAT+TGG | - | tig0023257:90010-90029 | None:intergenic | 35.0% | |
| ACGAAAAGGCTAACTTAACT+CGG | - | tig0023257:90133-90152 | None:intergenic | 35.0% | |
| AATACGAATTAGAACGTAGG+TGG | + | tig0023257:90226-90245 | Msa1407120:intron | 35.0% | |
| TGGAATATTCCTCTAGACAA+TGG | + | tig0023257:90246-90265 | Msa1407120:intron | 35.0% | |
| !!! | GGTTTTGATTCCAATTCCAA+TGG | - | tig0023257:90434-90453 | None:intergenic | 35.0% |
| AGCAGTTTCAAATACCCAAT+TGG | + | tig0023257:90561-90580 | Msa1407120:intron | 35.0% | |
| CACTCTCTTTGTCACTATTA+TGG | + | tig0023257:90626-90645 | Msa1407120:intron | 35.0% | |
| ATCACTGTCACATTCAACTA+TGG | - | tig0023257:90685-90704 | None:intergenic | 35.0% | |
| TTGAATGTGACAGTGATAAC+TGG | + | tig0023257:90688-90707 | Msa1407120:CDS | 35.0% | |
| TGAATGTGACAGTGATAACT+GGG | + | tig0023257:90689-90708 | Msa1407120:CDS | 35.0% | |
| ! | TAACTGGGTTGTTGATGAAT+TGG | + | tig0023257:90704-90723 | Msa1407120:CDS | 35.0% |
| ! | AACTGGGTTGTTGATGAATT+GGG | + | tig0023257:90705-90724 | Msa1407120:CDS | 35.0% |
| TTATAGGGACCAAAAGTTGA+AGG | + | tig0023257:91297-91316 | Msa1407120:intron | 35.0% | |
| GTTAGAGGGACAAAAGATAT+AGG | - | tig0023257:91386-91405 | None:intergenic | 35.0% | |
| ! | ATGATGGAGCTTCATTCTAA+TGG | + | tig0023257:91474-91493 | Msa1407120:CDS | 35.0% |
| !! | TAAAGCATTGGCTGCTTTAA+TGG | - | tig0023257:91564-91583 | None:intergenic | 35.0% |
| ATTAAAGCAGCCAATGCTTT+AGG | + | tig0023257:91563-91582 | Msa1407120:intron | 35.0% | |
| TTAAAGCAGCCAATGCTTTA+GGG | + | tig0023257:91564-91583 | Msa1407120:intron | 35.0% | |
| !! | TTCTAGAGCACTTTGGAATT+AGG | + | tig0023257:91745-91764 | Msa1407120:CDS | 35.0% |
| !! | TCTAGAGCACTTTGGAATTA+GGG | + | tig0023257:91746-91765 | Msa1407120:CDS | 35.0% |
| TCAGAGATTAACACTAATCC+AGG | + | tig0023257:91777-91796 | Msa1407120:CDS | 35.0% | |
| ! | GTTATGTTGATGAAGAAGGA+AGG | + | tig0023257:91799-91818 | Msa1407120:CDS | 35.0% |
| !! | ACCATCACATTGGTTTGATG+GGG | - | tig0023257:89963-89982 | None:intergenic | 40.0% |
| AGTGTGACTAACCATCACAT+TGG | - | tig0023257:89973-89992 | None:intergenic | 40.0% | |
| GTTAGTCACACTCTTAGAGA+GGG | + | tig0023257:89981-90000 | Msa1407120:CDS | 40.0% | |
| TTAGTCACACTCTTAGAGAG+GGG | + | tig0023257:89982-90001 | Msa1407120:CDS | 40.0% | |
| GAACCAATGTGCAAGTTTCA+TGG | + | tig0023257:90004-90023 | Msa1407120:CDS | 40.0% | |
| GAAGATTGATAAGACTGGCA+GGG | - | tig0023257:90079-90098 | None:intergenic | 40.0% | |
| AGAAGATTGATAAGACTGGC+AGG | - | tig0023257:90080-90099 | None:intergenic | 40.0% | |
| ! | TCGGATGAACAAAGTGTCAT+TGG | - | tig0023257:90114-90133 | None:intergenic | 40.0% |
| ATTCCTCTAGACAATGGAAG+TGG | + | tig0023257:90252-90271 | Msa1407120:intron | 40.0% | |
| AATCCACTTCCATTGTCTAG+AGG | - | tig0023257:90258-90277 | None:intergenic | 40.0% | |
| CTTACCATGAGATTGTTCCA+TGG | - | tig0023257:90768-90787 | None:intergenic | 40.0% | |
| TAAACACCATGCACGTTAGA+GGG | - | tig0023257:91400-91419 | None:intergenic | 40.0% | |
| ATAAACACCATGCACGTTAG+AGG | - | tig0023257:91401-91420 | None:intergenic | 40.0% | |
| !!! | ACATTGTGGAAGTTTTGGAG+AGG | + | tig0023257:91510-91529 | Msa1407120:intron | 40.0% |
| TTAATGGCAGGGATTGTTCT+GGG | - | tig0023257:91548-91567 | None:intergenic | 40.0% | |
| TTTAATGGCAGGGATTGTTC+TGG | - | tig0023257:91549-91568 | None:intergenic | 40.0% | |
| !! | GAGACAATTCTAGAGCACTT+TGG | + | tig0023257:91738-91757 | Msa1407120:CDS | 40.0% |
| CCTTCTTCATCAACATAACC+TGG | - | tig0023257:91798-91817 | None:intergenic | 40.0% | |
| ! | CCAGGTTATGTTGATGAAGA+AGG | + | tig0023257:91795-91814 | Msa1407120:CDS | 40.0% |
| GGCTTATTGAGATCATGGTA+AGG | - | tig0023257:91837-91856 | None:intergenic | 40.0% | |
| !! | ACCATCACATTGGTTTGATG+GGG | - | tig0023257:89963-89982 | None:intergenic | 40.0% |
| AGTGTGACTAACCATCACAT+TGG | - | tig0023257:89973-89992 | None:intergenic | 40.0% | |
| GTTAGTCACACTCTTAGAGA+GGG | + | tig0023257:89981-90000 | Msa1407120:CDS | 40.0% | |
| TTAGTCACACTCTTAGAGAG+GGG | + | tig0023257:89982-90001 | Msa1407120:CDS | 40.0% | |
| GAACCAATGTGCAAGTTTCA+TGG | + | tig0023257:90004-90023 | Msa1407120:CDS | 40.0% | |
| GAAGATTGATAAGACTGGCA+GGG | - | tig0023257:90079-90098 | None:intergenic | 40.0% | |
| AGAAGATTGATAAGACTGGC+AGG | - | tig0023257:90080-90099 | None:intergenic | 40.0% | |
| ! | TCGGATGAACAAAGTGTCAT+TGG | - | tig0023257:90114-90133 | None:intergenic | 40.0% |
| ATTCCTCTAGACAATGGAAG+TGG | + | tig0023257:90252-90271 | Msa1407120:intron | 40.0% | |
| AATCCACTTCCATTGTCTAG+AGG | - | tig0023257:90258-90277 | None:intergenic | 40.0% | |
| CTTACCATGAGATTGTTCCA+TGG | - | tig0023257:90768-90787 | None:intergenic | 40.0% | |
| TAAACACCATGCACGTTAGA+GGG | - | tig0023257:91400-91419 | None:intergenic | 40.0% | |
| ATAAACACCATGCACGTTAG+AGG | - | tig0023257:91401-91420 | None:intergenic | 40.0% | |
| !!! | ACATTGTGGAAGTTTTGGAG+AGG | + | tig0023257:91510-91529 | Msa1407120:intron | 40.0% |
| TTAATGGCAGGGATTGTTCT+GGG | - | tig0023257:91548-91567 | None:intergenic | 40.0% | |
| TTTAATGGCAGGGATTGTTC+TGG | - | tig0023257:91549-91568 | None:intergenic | 40.0% | |
| !! | GAGACAATTCTAGAGCACTT+TGG | + | tig0023257:91738-91757 | Msa1407120:CDS | 40.0% |
| CCTTCTTCATCAACATAACC+TGG | - | tig0023257:91798-91817 | None:intergenic | 40.0% | |
| ! | CCAGGTTATGTTGATGAAGA+AGG | + | tig0023257:91795-91814 | Msa1407120:CDS | 40.0% |
| GGCTTATTGAGATCATGGTA+AGG | - | tig0023257:91837-91856 | None:intergenic | 40.0% | |
| ! | GGTTAGTCACACTCTTAGAG+AGG | + | tig0023257:89980-89999 | Msa1407120:CDS | 45.0% |
| AGATTGTTCCATGGCATGGT+GGG | - | tig0023257:90759-90778 | None:intergenic | 45.0% | |
| CATGAGATTGTTCCATGGCA+TGG | - | tig0023257:90763-90782 | None:intergenic | 45.0% | |
| CATGCCATGGAACAATCTCA+TGG | + | tig0023257:90761-90780 | Msa1407120:CDS | 45.0% | |
| ! | TTTTGTCCCTCTAACGTGCA+TGG | + | tig0023257:91391-91410 | Msa1407120:intron | 45.0% |
| TAATGGCAGGGATTGTTCTG+GGG | - | tig0023257:91547-91566 | None:intergenic | 45.0% | |
| ! | CATTGGCTGCTTTAATGGCA+GGG | - | tig0023257:91559-91578 | None:intergenic | 45.0% |
| GAGGAGGCTTATTGAGATCA+TGG | - | tig0023257:91842-91861 | None:intergenic | 45.0% | |
| CACAGATTACATCTGTGAGG+AGG | - | tig0023257:91858-91877 | None:intergenic | 45.0% | |
| GGACACAGATTACATCTGTG+AGG | - | tig0023257:91861-91880 | None:intergenic | 45.0% | |
| ! | GGTTAGTCACACTCTTAGAG+AGG | + | tig0023257:89980-89999 | Msa1407120:CDS | 45.0% |
| AGATTGTTCCATGGCATGGT+GGG | - | tig0023257:90759-90778 | None:intergenic | 45.0% | |
| CATGAGATTGTTCCATGGCA+TGG | - | tig0023257:90763-90782 | None:intergenic | 45.0% | |
| CATGCCATGGAACAATCTCA+TGG | + | tig0023257:90761-90780 | Msa1407120:CDS | 45.0% | |
| ! | TTTTGTCCCTCTAACGTGCA+TGG | + | tig0023257:91391-91410 | Msa1407120:intron | 45.0% |
| TAATGGCAGGGATTGTTCTG+GGG | - | tig0023257:91547-91566 | None:intergenic | 45.0% | |
| ! | CATTGGCTGCTTTAATGGCA+GGG | - | tig0023257:91559-91578 | None:intergenic | 45.0% |
| GAGGAGGCTTATTGAGATCA+TGG | - | tig0023257:91842-91861 | None:intergenic | 45.0% | |
| CACAGATTACATCTGTGAGG+AGG | - | tig0023257:91858-91877 | None:intergenic | 45.0% | |
| GGACACAGATTACATCTGTG+AGG | - | tig0023257:91861-91880 | None:intergenic | 45.0% | |
| !!! | TAAAAAATTCTAAATTTTTT+TGG | - | tig0023257:91085-91104 | None:intergenic | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+CGG | + | tig0023257:91123-91142 | Msa1407120:intron | 5.0% |
| !!! | TAAAAAATTCTAAATTTTTT+TGG | - | tig0023257:91085-91104 | None:intergenic | 5.0% |
| !!! | ATGAATTTTTATATTTTTTA+CGG | + | tig0023257:91123-91142 | Msa1407120:intron | 5.0% |
| GCCCCATCAAACCAATGTGA+TGG | + | tig0023257:89959-89978 | Msa1407120:CDS | 50.0% | |
| ! | AACTTGTTCCCACCATGCCA+TGG | + | tig0023257:90748-90767 | Msa1407120:CDS | 50.0% |
| GAGATTGTTCCATGGCATGG+TGG | - | tig0023257:90760-90779 | None:intergenic | 50.0% | |
| !! | GGGATTGTTCTGGGGTGAAT+AGG | - | tig0023257:91539-91558 | None:intergenic | 50.0% |
| !! | GCATTGGCTGCTTTAATGGC+AGG | - | tig0023257:91560-91579 | None:intergenic | 50.0% |
| GCCCCATCAAACCAATGTGA+TGG | + | tig0023257:89959-89978 | Msa1407120:CDS | 50.0% | |
| ! | AACTTGTTCCCACCATGCCA+TGG | + | tig0023257:90748-90767 | Msa1407120:CDS | 50.0% |
| GAGATTGTTCCATGGCATGG+TGG | - | tig0023257:90760-90779 | None:intergenic | 50.0% | |
| !! | GGGATTGTTCTGGGGTGAAT+AGG | - | tig0023257:91539-91558 | None:intergenic | 50.0% |
| !! | GCATTGGCTGCTTTAATGGC+AGG | - | tig0023257:91560-91579 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023257 | gene | 89891 | 91896 | 89891 | ID=Msa1407120;Name=Msa1407120 |
| tig0023257 | mRNA | 89891 | 91896 | 89891 | ID=Msa1407120-mRNA-1;Parent=Msa1407120;Name=Msa1407120-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.33|0|1|1|1|4|0|212 |
| tig0023257 | exon | 89891 | 90138 | 89891 | ID=Msa1407120-mRNA-1:exon:24867;Parent=Msa1407120-mRNA-1 |
| tig0023257 | exon | 90653 | 90782 | 90653 | ID=Msa1407120-mRNA-1:exon:24868;Parent=Msa1407120-mRNA-1 |
| tig0023257 | exon | 91465 | 91520 | 91465 | ID=Msa1407120-mRNA-1:exon:24869;Parent=Msa1407120-mRNA-1 |
| tig0023257 | exon | 91695 | 91896 | 91695 | ID=Msa1407120-mRNA-1:exon:24870;Parent=Msa1407120-mRNA-1 |
| tig0023257 | CDS | 89891 | 90138 | 89891 | ID=Msa1407120-mRNA-1:cds;Parent=Msa1407120-mRNA-1 |
| tig0023257 | CDS | 90653 | 90782 | 90653 | ID=Msa1407120-mRNA-1:cds;Parent=Msa1407120-mRNA-1 |
| tig0023257 | CDS | 91465 | 91520 | 91465 | ID=Msa1407120-mRNA-1:cds;Parent=Msa1407120-mRNA-1 |
| tig0023257 | CDS | 91695 | 91896 | 91695 | ID=Msa1407120-mRNA-1:cds;Parent=Msa1407120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
