Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407180 | XP_003618127.1 | 91.489 | 94 | 6 | 2 | 31 | 124 | 60 | 151 | 2.21e-54 | 177 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407180 | G7KFG9 | 91.489 | 94 | 6 | 2 | 31 | 124 | 60 | 151 | 1.06e-54 | 177 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1367670 | Msa1407180 | 0.922404 | 1.027822e-88 | -8.615850e-47 |
| Msa1407180 | Msa1432120 | 0.900795 | 5.120539e-78 | -8.615850e-47 |
| Msa0627580 | Msa1407180 | 0.822692 | 2.067119e-53 | -8.615850e-47 |
| Msa0754550 | Msa1407180 | 0.889063 | 3.387755e-73 | -8.615850e-47 |
| Msa0216740 | Msa1407180 | 0.829590 | 4.728034e-55 | -8.615850e-47 |
| Msa1329420 | Msa1407180 | 0.801840 | 7.448464e-49 | -8.615850e-47 |
| Msa0242820 | Msa1407180 | 0.819862 | 9.291238e-53 | -8.615850e-47 |
| Msa0287640 | Msa1407180 | 0.810341 | 1.209622e-50 | -8.615850e-47 |
| Msa0287660 | Msa1407180 | 0.817721 | 2.847495e-52 | -8.615850e-47 |
| Msa0295960 | Msa1407180 | 0.822085 | 2.860868e-53 | -8.615850e-47 |
| Msa0333950 | Msa1407180 | 0.830071 | 3.609907e-55 | -8.615850e-47 |
| Msa0334060 | Msa1407180 | 0.827760 | 1.309424e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407180 | MtrunA17_Chr5g0448731 | 91.489 | 94 | 6 | 2 | 31 | 124 | 60 | 151 | 2.03e-58 | 177 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407180 | AT4G35320.1 | 45.349 | 86 | 46 | 1 | 31 | 115 | 54 | 139 | 8.14e-20 | 79.7 |
Find 34 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGATCTGTTGCAAAGAT+AGG | 0.315447 | tig0023272:-82007 | None:intergenic |
| GTTGGAAACATGTTATTTGC+AGG | 0.354673 | tig0023272:+82077 | Msa1407180:CDS |
| GGTGGACCTGGAGCTGGGCC+TGG | 0.359670 | tig0023272:+81969 | Msa1407180:CDS |
| TGAGAATGACGACTTGGATC+TGG | 0.361698 | tig0023272:-81915 | None:intergenic |
| TGGGCGACTCTATCAGAAAT+TGG | 0.371725 | tig0023272:+81948 | Msa1407180:CDS |
| GAGAGAGGAAGTTGATTGAT+AGG | 0.376623 | tig0023272:-81861 | None:intergenic |
| TTGCTGACTTCCCGTGATAA+GGG | 0.402825 | tig0023272:+82052 | Msa1407180:CDS |
| GTCATTCTCATTCTCATCCA+TGG | 0.415773 | tig0023272:+81928 | Msa1407180:CDS |
| GTTGCTGACTTCCCGTGATA+AGG | 0.430057 | tig0023272:+82051 | Msa1407180:CDS |
| GAAATTGGTGGACCTGGAGC+TGG | 0.438969 | tig0023272:+81963 | Msa1407180:CDS |
| GCCGACATGGTTTGAGGAAG+AGG | 0.443482 | tig0023272:-82151 | None:intergenic |
| TGCGTAGTAATAATCAGAAT+TGG | 0.448686 | tig0023272:-82128 | None:intergenic |
| GAGGATCCAGGCCCAGCTCC+AGG | 0.463280 | tig0023272:-81975 | None:intergenic |
| TGTTCATGTGCATGTTCAGC+AGG | 0.473945 | tig0023272:+80895 | Msa1407180:CDS |
| CTATCAGAAATTGGTGGACC+TGG | 0.485539 | tig0023272:+81957 | Msa1407180:CDS |
| AGATCTTGAAATGAATGAGC+AGG | 0.491670 | tig0023272:+82021 | Msa1407180:CDS |
| CAAAGATAGGCTTCCTTGAG+AGG | 0.500750 | tig0023272:-81994 | None:intergenic |
| ATCACGGGAAGTCAGCAACT+TGG | 0.507000 | tig0023272:-82047 | None:intergenic |
| GAGAATGACGACTTGGATCT+GGG | 0.517935 | tig0023272:-81914 | None:intergenic |
| AACATGTTATTTGCAGGATG+AGG | 0.535337 | tig0023272:+82083 | Msa1407180:CDS |
| GTTTCCAACTCCCCTTATCA+CGG | 0.535374 | tig0023272:-82063 | None:intergenic |
| TCATTCTCATTCTCATCCAT+GGG | 0.545509 | tig0023272:+81929 | Msa1407180:CDS |
| AAATTGGTGGACCTGGAGCT+GGG | 0.557795 | tig0023272:+81964 | Msa1407180:CDS |
| GTGTAAGCCGACATGGTTTG+AGG | 0.558720 | tig0023272:-82157 | None:intergenic |
| AGGCTTCCTTGAGAGGATCC+AGG | 0.559333 | tig0023272:-81987 | None:intergenic |
| TTTCCAACTCCCCTTATCAC+GGG | 0.565961 | tig0023272:-82062 | None:intergenic |
| TGTTGTTTCTGCAGTGAGAG+AGG | 0.590813 | tig0023272:-81876 | None:intergenic |
| TGCTGACTTCCCGTGATAAG+GGG | 0.596069 | tig0023272:+82053 | Msa1407180:CDS |
| TCATTGTGTGTAAGCCGACA+TGG | 0.600825 | tig0023272:-82164 | None:intergenic |
| GCGACTCTATCAGAAATTGG+TGG | 0.617542 | tig0023272:+81951 | Msa1407180:CDS |
| TGAGAATGAGAATGACGACT+TGG | 0.638362 | tig0023272:-81921 | None:intergenic |
| ATTTCTGATAGAGTCGCCCA+TGG | 0.647698 | tig0023272:-81945 | None:intergenic |
| ATGCACATGAACAACTACCA+TGG | 0.671731 | tig0023272:-80885 | None:intergenic |
| ACCTCTTCCTCAAACCATGT+CGG | 0.673431 | tig0023272:+82150 | Msa1407180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACTCATTTATTAATTAATTT+GGG | + | tig0023272:81264-81283 | Msa1407180:intron | 10.0% |
| !! | ACTCATTTATTAATTAATTT+GGG | + | tig0023272:81264-81283 | Msa1407180:intron | 10.0% |
| !!! | TATATATTTGGCTTAAAAAA+CGG | - | tig0023272:81008-81027 | None:intergenic | 15.0% |
| !! | GACTCATTTATTAATTAATT+TGG | + | tig0023272:81263-81282 | Msa1407180:intron | 15.0% |
| !! | AAAAAAAAAAGATTCAACTT+GGG | - | tig0023272:81320-81339 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAGATTCAACT+TGG | - | tig0023272:81321-81340 | None:intergenic | 15.0% |
| !!! | AGAATGAAATATTTAATTTG+AGG | + | tig0023272:81418-81437 | Msa1407180:intron | 15.0% |
| !!! | GAATGAAATATTTAATTTGA+GGG | + | tig0023272:81419-81438 | Msa1407180:intron | 15.0% |
| !!! | TATATATTTGGCTTAAAAAA+CGG | - | tig0023272:81008-81027 | None:intergenic | 15.0% |
| !! | GACTCATTTATTAATTAATT+TGG | + | tig0023272:81263-81282 | Msa1407180:intron | 15.0% |
| !! | AAAAAAAAAAGATTCAACTT+GGG | - | tig0023272:81320-81339 | None:intergenic | 15.0% |
| !! | AAAAAAAAAAAGATTCAACT+TGG | - | tig0023272:81321-81340 | None:intergenic | 15.0% |
| !!! | AGAATGAAATATTTAATTTG+AGG | + | tig0023272:81418-81437 | Msa1407180:intron | 15.0% |
| !!! | GAATGAAATATTTAATTTGA+GGG | + | tig0023272:81419-81438 | Msa1407180:intron | 15.0% |
| !! | AAAACATTAATTAAGTACGT+AGG | + | tig0023272:80929-80948 | Msa1407180:intron | 20.0% |
| !! | GATCGTAAGAATTATATATT+TGG | - | tig0023272:81020-81039 | None:intergenic | 20.0% |
| !! | ATTCATGTCCTTAATTATAA+GGG | + | tig0023272:81201-81220 | Msa1407180:intron | 20.0% |
| !! | TAATACTAATACCAATCATA+TGG | - | tig0023272:81630-81649 | None:intergenic | 20.0% |
| !! | AAAACATTAATTAAGTACGT+AGG | + | tig0023272:80929-80948 | Msa1407180:intron | 20.0% |
| !! | GATCGTAAGAATTATATATT+TGG | - | tig0023272:81020-81039 | None:intergenic | 20.0% |
| !! | ATTCATGTCCTTAATTATAA+GGG | + | tig0023272:81201-81220 | Msa1407180:intron | 20.0% |
| !! | TAATACTAATACCAATCATA+TGG | - | tig0023272:81630-81649 | None:intergenic | 20.0% |
| ! | GATTCATGTCCTTAATTATA+AGG | + | tig0023272:81200-81219 | Msa1407180:intron | 25.0% |
| ! | TTCATGTCCTTAATTATAAG+GGG | + | tig0023272:81202-81221 | Msa1407180:intron | 25.0% |
| !! | ATTAATTTGGGACTTGATTT+AGG | + | tig0023272:81276-81295 | Msa1407180:intron | 25.0% |
| !!! | ATTTAATTTGAGGGTTAAGA+AGG | + | tig0023272:81428-81447 | Msa1407180:intron | 25.0% |
| ! | GATTCATGTCCTTAATTATA+AGG | + | tig0023272:81200-81219 | Msa1407180:intron | 25.0% |
| ! | TTCATGTCCTTAATTATAAG+GGG | + | tig0023272:81202-81221 | Msa1407180:intron | 25.0% |
| !! | ATTAATTTGGGACTTGATTT+AGG | + | tig0023272:81276-81295 | Msa1407180:intron | 25.0% |
| !!! | ATTTAATTTGAGGGTTAAGA+AGG | + | tig0023272:81428-81447 | Msa1407180:intron | 25.0% |
| TCTTTACATAAATATGCTCG+TGG | - | tig0023272:81061-81080 | None:intergenic | 30.0% | |
| !! | TATACTGGTTTGAATCTCAT+TGG | - | tig0023272:81231-81250 | None:intergenic | 30.0% |
| !! | GTCTTTAAGATAGTCTATAC+TGG | - | tig0023272:81246-81265 | None:intergenic | 30.0% |
| AAAAAAAGATTCAACTTGGG+TGG | - | tig0023272:81317-81336 | None:intergenic | 30.0% | |
| ! | AGGTAAGGTAAGAGTAATTT+TGG | + | tig0023272:81453-81472 | Msa1407180:intron | 30.0% |
| TGCGTAGTAATAATCAGAAT+TGG | - | tig0023272:82131-82150 | None:intergenic | 30.0% | |
| TCTTTACATAAATATGCTCG+TGG | - | tig0023272:81061-81080 | None:intergenic | 30.0% | |
| !! | TATACTGGTTTGAATCTCAT+TGG | - | tig0023272:81231-81250 | None:intergenic | 30.0% |
| !! | GTCTTTAAGATAGTCTATAC+TGG | - | tig0023272:81246-81265 | None:intergenic | 30.0% |
| AAAAAAAGATTCAACTTGGG+TGG | - | tig0023272:81317-81336 | None:intergenic | 30.0% | |
| ! | AGGTAAGGTAAGAGTAATTT+TGG | + | tig0023272:81453-81472 | Msa1407180:intron | 30.0% |
| TGCGTAGTAATAATCAGAAT+TGG | - | tig0023272:82131-82150 | None:intergenic | 30.0% | |
| ACGTTGAAGATCAAGTGTAT+TGG | + | tig0023272:81127-81146 | Msa1407180:intron | 35.0% | |
| TTGGTTGCCCCTTATAATTA+AGG | - | tig0023272:81212-81231 | None:intergenic | 35.0% | |
| ATTTGAGGGTTAAGAAGGTA+AGG | + | tig0023272:81433-81452 | Msa1407180:intron | 35.0% | |
| AATAATAGCAAGAGACAGAG+AGG | + | tig0023272:81516-81535 | Msa1407180:intron | 35.0% | |
| CAAGCAAGAGAAAAGAGAAA+GGG | + | tig0023272:81546-81565 | Msa1407180:intron | 35.0% | |
| ! | AGAAAAGAGAAAGGGTGTAA+AGG | + | tig0023272:81554-81573 | Msa1407180:intron | 35.0% |
| ! | CCTGTTTATTCCTTTTTGTG+GGG | - | tig0023272:81585-81604 | None:intergenic | 35.0% |
| ! | GCCTGTTTATTCCTTTTTGT+GGG | - | tig0023272:81586-81605 | None:intergenic | 35.0% |
| ! | AGCCTGTTTATTCCTTTTTG+TGG | - | tig0023272:81587-81606 | None:intergenic | 35.0% |
| GATGCATTTCACCATATGAT+TGG | + | tig0023272:81616-81635 | Msa1407180:intron | 35.0% | |
| TCATGATATGGATGCTTGAT+TGG | - | tig0023272:81735-81754 | None:intergenic | 35.0% | |
| TTGGTAAGAAGCTCATGATA+TGG | - | tig0023272:81747-81766 | None:intergenic | 35.0% | |
| TTCTTACCAACAAGTAGAAG+TGG | + | tig0023272:81757-81776 | Msa1407180:intron | 35.0% | |
| !!! | ATTTGGTTTTGGTTGACACA+GGG | - | tig0023272:81795-81814 | None:intergenic | 35.0% |
| !!! | AATTTGGTTTTGGTTGACAC+AGG | - | tig0023272:81796-81815 | None:intergenic | 35.0% |
| GTGTCAACCAAAACCAAATT+AGG | + | tig0023272:81796-81815 | Msa1407180:intron | 35.0% | |
| !! | AGCATCTCCTAATTTGGTTT+TGG | - | tig0023272:81806-81825 | None:intergenic | 35.0% |
| TCATTCTCATTCTCATCCAT+GGG | + | tig0023272:81929-81948 | Msa1407180:CDS | 35.0% | |
| TCAAGATCTGTTGCAAAGAT+AGG | - | tig0023272:82010-82029 | None:intergenic | 35.0% | |
| AGATCTTGAAATGAATGAGC+AGG | + | tig0023272:82021-82040 | Msa1407180:CDS | 35.0% | |
| ! | GTTGGAAACATGTTATTTGC+AGG | + | tig0023272:82077-82096 | Msa1407180:CDS | 35.0% |
| ! | AACATGTTATTTGCAGGATG+AGG | + | tig0023272:82083-82102 | Msa1407180:CDS | 35.0% |
| ACGTTGAAGATCAAGTGTAT+TGG | + | tig0023272:81127-81146 | Msa1407180:intron | 35.0% | |
| TTGGTTGCCCCTTATAATTA+AGG | - | tig0023272:81212-81231 | None:intergenic | 35.0% | |
| ATTTGAGGGTTAAGAAGGTA+AGG | + | tig0023272:81433-81452 | Msa1407180:intron | 35.0% | |
| AATAATAGCAAGAGACAGAG+AGG | + | tig0023272:81516-81535 | Msa1407180:intron | 35.0% | |
| CAAGCAAGAGAAAAGAGAAA+GGG | + | tig0023272:81546-81565 | Msa1407180:intron | 35.0% | |
| ! | AGAAAAGAGAAAGGGTGTAA+AGG | + | tig0023272:81554-81573 | Msa1407180:intron | 35.0% |
| ! | CCTGTTTATTCCTTTTTGTG+GGG | - | tig0023272:81585-81604 | None:intergenic | 35.0% |
| ! | GCCTGTTTATTCCTTTTTGT+GGG | - | tig0023272:81586-81605 | None:intergenic | 35.0% |
| ! | AGCCTGTTTATTCCTTTTTG+TGG | - | tig0023272:81587-81606 | None:intergenic | 35.0% |
| GATGCATTTCACCATATGAT+TGG | + | tig0023272:81616-81635 | Msa1407180:intron | 35.0% | |
| TCATGATATGGATGCTTGAT+TGG | - | tig0023272:81735-81754 | None:intergenic | 35.0% | |
| TTGGTAAGAAGCTCATGATA+TGG | - | tig0023272:81747-81766 | None:intergenic | 35.0% | |
| TTCTTACCAACAAGTAGAAG+TGG | + | tig0023272:81757-81776 | Msa1407180:intron | 35.0% | |
| !!! | ATTTGGTTTTGGTTGACACA+GGG | - | tig0023272:81795-81814 | None:intergenic | 35.0% |
| !!! | AATTTGGTTTTGGTTGACAC+AGG | - | tig0023272:81796-81815 | None:intergenic | 35.0% |
| GTGTCAACCAAAACCAAATT+AGG | + | tig0023272:81796-81815 | Msa1407180:intron | 35.0% | |
| !! | AGCATCTCCTAATTTGGTTT+TGG | - | tig0023272:81806-81825 | None:intergenic | 35.0% |
| TCATTCTCATTCTCATCCAT+GGG | + | tig0023272:81929-81948 | Msa1407180:CDS | 35.0% | |
| TCAAGATCTGTTGCAAAGAT+AGG | - | tig0023272:82010-82029 | None:intergenic | 35.0% | |
| AGATCTTGAAATGAATGAGC+AGG | + | tig0023272:82021-82040 | Msa1407180:CDS | 35.0% | |
| ! | GTTGGAAACATGTTATTTGC+AGG | + | tig0023272:82077-82096 | Msa1407180:CDS | 35.0% |
| ! | AACATGTTATTTGCAGGATG+AGG | + | tig0023272:82083-82102 | Msa1407180:CDS | 35.0% |
| TGTATCTCTTTCTTACACCG+TGG | - | tig0023272:81158-81177 | None:intergenic | 40.0% | |
| AGGGTTAAGAAGGTAAGGTA+AGG | + | tig0023272:81438-81457 | Msa1407180:intron | 40.0% | |
| GCAAGCAAGAGAAAAGAGAA+AGG | + | tig0023272:81545-81564 | Msa1407180:intron | 40.0% | |
| ! | AAGAGAAAGGGTGTAAAGGA+AGG | + | tig0023272:81558-81577 | Msa1407180:intron | 40.0% |
| CCCCACAAAAAGGAATAAAC+AGG | + | tig0023272:81582-81601 | Msa1407180:intron | 40.0% | |
| AAGGAATAAACAGGCTGTGA+AGG | + | tig0023272:81591-81610 | Msa1407180:intron | 40.0% | |
| ATTAGTATTTCTCGCTCGCT+AGG | + | tig0023272:81658-81677 | Msa1407180:intron | 40.0% | |
| GATATGGATGCTTGATTGGT+TGG | - | tig0023272:81731-81750 | None:intergenic | 40.0% | |
| ACCAACAAGTAGAAGTGGAA+AGG | + | tig0023272:81762-81781 | Msa1407180:intron | 40.0% | |
| CCAACAAGTAGAAGTGGAAA+GGG | + | tig0023272:81763-81782 | Msa1407180:intron | 40.0% | |
| CAACAAGTAGAAGTGGAAAG+GGG | + | tig0023272:81764-81783 | Msa1407180:intron | 40.0% | |
| ! | GAGAGAGGAAGTTGATTGAT+AGG | - | tig0023272:81864-81883 | None:intergenic | 40.0% |
| TGAGAATGAGAATGACGACT+TGG | - | tig0023272:81924-81943 | None:intergenic | 40.0% | |
| GTCATTCTCATTCTCATCCA+TGG | + | tig0023272:81928-81947 | Msa1407180:CDS | 40.0% | |
| TGTATCTCTTTCTTACACCG+TGG | - | tig0023272:81158-81177 | None:intergenic | 40.0% | |
| AGGGTTAAGAAGGTAAGGTA+AGG | + | tig0023272:81438-81457 | Msa1407180:intron | 40.0% | |
| GCAAGCAAGAGAAAAGAGAA+AGG | + | tig0023272:81545-81564 | Msa1407180:intron | 40.0% | |
| ! | AAGAGAAAGGGTGTAAAGGA+AGG | + | tig0023272:81558-81577 | Msa1407180:intron | 40.0% |
| CCCCACAAAAAGGAATAAAC+AGG | + | tig0023272:81582-81601 | Msa1407180:intron | 40.0% | |
| AAGGAATAAACAGGCTGTGA+AGG | + | tig0023272:81591-81610 | Msa1407180:intron | 40.0% | |
| ATTAGTATTTCTCGCTCGCT+AGG | + | tig0023272:81658-81677 | Msa1407180:intron | 40.0% | |
| GATATGGATGCTTGATTGGT+TGG | - | tig0023272:81731-81750 | None:intergenic | 40.0% | |
| ACCAACAAGTAGAAGTGGAA+AGG | + | tig0023272:81762-81781 | Msa1407180:intron | 40.0% | |
| CCAACAAGTAGAAGTGGAAA+GGG | + | tig0023272:81763-81782 | Msa1407180:intron | 40.0% | |
| CAACAAGTAGAAGTGGAAAG+GGG | + | tig0023272:81764-81783 | Msa1407180:intron | 40.0% | |
| ! | GAGAGAGGAAGTTGATTGAT+AGG | - | tig0023272:81864-81883 | None:intergenic | 40.0% |
| TGAGAATGAGAATGACGACT+TGG | - | tig0023272:81924-81943 | None:intergenic | 40.0% | |
| GTCATTCTCATTCTCATCCA+TGG | + | tig0023272:81928-81947 | Msa1407180:CDS | 40.0% | |
| TGTTCATGTGCATGTTCAGC+AGG | + | tig0023272:80895-80914 | Msa1407180:CDS | 45.0% | |
| ! | CAAGTGTATTGGAGCATCCA+CGG | + | tig0023272:81138-81157 | Msa1407180:intron | 45.0% |
| AAAGGAAGGACCCCACAAAA+AGG | + | tig0023272:81572-81591 | Msa1407180:intron | 45.0% | |
| !! | TCGCTAGGTTGGTTTGGTTT+CGG | + | tig0023272:81673-81692 | Msa1407180:intron | 45.0% |
| ! | TGGATGCTTGATTGGTTGGT+TGG | - | tig0023272:81727-81746 | None:intergenic | 45.0% |
| CCCTTTCCACTTCTACTTGT+TGG | - | tig0023272:81766-81785 | None:intergenic | 45.0% | |
| AGCAGCAGCATCTCCTAATT+TGG | - | tig0023272:81812-81831 | None:intergenic | 45.0% | |
| !! | TGTTGTTTCTGCAGTGAGAG+AGG | - | tig0023272:81879-81898 | None:intergenic | 45.0% |
| ! | GAGAATGACGACTTGGATCT+GGG | - | tig0023272:81917-81936 | None:intergenic | 45.0% |
| ! | TGAGAATGACGACTTGGATC+TGG | - | tig0023272:81918-81937 | None:intergenic | 45.0% |
| ATTTCTGATAGAGTCGCCCA+TGG | - | tig0023272:81948-81967 | None:intergenic | 45.0% | |
| TGGGCGACTCTATCAGAAAT+TGG | + | tig0023272:81948-81967 | Msa1407180:CDS | 45.0% | |
| GCGACTCTATCAGAAATTGG+TGG | + | tig0023272:81951-81970 | Msa1407180:CDS | 45.0% | |
| ! | CTATCAGAAATTGGTGGACC+TGG | + | tig0023272:81957-81976 | Msa1407180:CDS | 45.0% |
| CAAAGATAGGCTTCCTTGAG+AGG | - | tig0023272:81997-82016 | None:intergenic | 45.0% | |
| !! | TTGCTGACTTCCCGTGATAA+GGG | + | tig0023272:82052-82071 | Msa1407180:CDS | 45.0% |
| TTTCCAACTCCCCTTATCAC+GGG | - | tig0023272:82065-82084 | None:intergenic | 45.0% | |
| GTTTCCAACTCCCCTTATCA+CGG | - | tig0023272:82066-82085 | None:intergenic | 45.0% | |
| ACCTCTTCCTCAAACCATGT+CGG | + | tig0023272:82150-82169 | Msa1407180:CDS | 45.0% | |
| TCATTGTGTGTAAGCCGACA+TGG | - | tig0023272:82167-82186 | None:intergenic | 45.0% | |
| TGTTCATGTGCATGTTCAGC+AGG | + | tig0023272:80895-80914 | Msa1407180:CDS | 45.0% | |
| ! | CAAGTGTATTGGAGCATCCA+CGG | + | tig0023272:81138-81157 | Msa1407180:intron | 45.0% |
| AAAGGAAGGACCCCACAAAA+AGG | + | tig0023272:81572-81591 | Msa1407180:intron | 45.0% | |
| !! | TCGCTAGGTTGGTTTGGTTT+CGG | + | tig0023272:81673-81692 | Msa1407180:intron | 45.0% |
| ! | TGGATGCTTGATTGGTTGGT+TGG | - | tig0023272:81727-81746 | None:intergenic | 45.0% |
| CCCTTTCCACTTCTACTTGT+TGG | - | tig0023272:81766-81785 | None:intergenic | 45.0% | |
| AGCAGCAGCATCTCCTAATT+TGG | - | tig0023272:81812-81831 | None:intergenic | 45.0% | |
| !! | TGTTGTTTCTGCAGTGAGAG+AGG | - | tig0023272:81879-81898 | None:intergenic | 45.0% |
| ! | GAGAATGACGACTTGGATCT+GGG | - | tig0023272:81917-81936 | None:intergenic | 45.0% |
| ! | TGAGAATGACGACTTGGATC+TGG | - | tig0023272:81918-81937 | None:intergenic | 45.0% |
| ATTTCTGATAGAGTCGCCCA+TGG | - | tig0023272:81948-81967 | None:intergenic | 45.0% | |
| TGGGCGACTCTATCAGAAAT+TGG | + | tig0023272:81948-81967 | Msa1407180:CDS | 45.0% | |
| GCGACTCTATCAGAAATTGG+TGG | + | tig0023272:81951-81970 | Msa1407180:CDS | 45.0% | |
| ! | CTATCAGAAATTGGTGGACC+TGG | + | tig0023272:81957-81976 | Msa1407180:CDS | 45.0% |
| CAAAGATAGGCTTCCTTGAG+AGG | - | tig0023272:81997-82016 | None:intergenic | 45.0% | |
| !! | TTGCTGACTTCCCGTGATAA+GGG | + | tig0023272:82052-82071 | Msa1407180:CDS | 45.0% |
| TTTCCAACTCCCCTTATCAC+GGG | - | tig0023272:82065-82084 | None:intergenic | 45.0% | |
| GTTTCCAACTCCCCTTATCA+CGG | - | tig0023272:82066-82085 | None:intergenic | 45.0% | |
| ACCTCTTCCTCAAACCATGT+CGG | + | tig0023272:82150-82169 | Msa1407180:CDS | 45.0% | |
| TCATTGTGTGTAAGCCGACA+TGG | - | tig0023272:82167-82186 | None:intergenic | 45.0% | |
| GTATTTCTCGCTCGCTAGGT+TGG | + | tig0023272:81662-81681 | Msa1407180:intron | 50.0% | |
| ! | AAATTGGTGGACCTGGAGCT+GGG | + | tig0023272:81964-81983 | Msa1407180:CDS | 50.0% |
| ATCACGGGAAGTCAGCAACT+TGG | - | tig0023272:82050-82069 | None:intergenic | 50.0% | |
| !! | GTTGCTGACTTCCCGTGATA+AGG | + | tig0023272:82051-82070 | Msa1407180:CDS | 50.0% |
| !! | TGCTGACTTCCCGTGATAAG+GGG | + | tig0023272:82053-82072 | Msa1407180:CDS | 50.0% |
| GTGTAAGCCGACATGGTTTG+AGG | - | tig0023272:82160-82179 | None:intergenic | 50.0% | |
| GTATTTCTCGCTCGCTAGGT+TGG | + | tig0023272:81662-81681 | Msa1407180:intron | 50.0% | |
| ! | AAATTGGTGGACCTGGAGCT+GGG | + | tig0023272:81964-81983 | Msa1407180:CDS | 50.0% |
| ATCACGGGAAGTCAGCAACT+TGG | - | tig0023272:82050-82069 | None:intergenic | 50.0% | |
| !! | GTTGCTGACTTCCCGTGATA+AGG | + | tig0023272:82051-82070 | Msa1407180:CDS | 50.0% |
| !! | TGCTGACTTCCCGTGATAAG+GGG | + | tig0023272:82053-82072 | Msa1407180:CDS | 50.0% |
| GTGTAAGCCGACATGGTTTG+AGG | - | tig0023272:82160-82179 | None:intergenic | 50.0% | |
| !! | TCTCGCTCGCTAGGTTGGTT+TGG | + | tig0023272:81667-81686 | Msa1407180:intron | 55.0% |
| ! | GAAATTGGTGGACCTGGAGC+TGG | + | tig0023272:81963-81982 | Msa1407180:CDS | 55.0% |
| AGGCTTCCTTGAGAGGATCC+AGG | - | tig0023272:81990-82009 | None:intergenic | 55.0% | |
| CTTCCCGTGATAAGGGGAGT+TGG | + | tig0023272:82059-82078 | Msa1407180:CDS | 55.0% | |
| GCCGACATGGTTTGAGGAAG+AGG | - | tig0023272:82154-82173 | None:intergenic | 55.0% | |
| !! | TCTCGCTCGCTAGGTTGGTT+TGG | + | tig0023272:81667-81686 | Msa1407180:intron | 55.0% |
| ! | GAAATTGGTGGACCTGGAGC+TGG | + | tig0023272:81963-81982 | Msa1407180:CDS | 55.0% |
| AGGCTTCCTTGAGAGGATCC+AGG | - | tig0023272:81990-82009 | None:intergenic | 55.0% | |
| CTTCCCGTGATAAGGGGAGT+TGG | + | tig0023272:82059-82078 | Msa1407180:CDS | 55.0% | |
| GCCGACATGGTTTGAGGAAG+AGG | - | tig0023272:82154-82173 | None:intergenic | 55.0% | |
| GATGCTGCTGCTGCTGATGC+AGG | + | tig0023272:81820-81839 | Msa1407180:intron | 60.0% | |
| GATGCTGCTGCTGCTGATGC+AGG | + | tig0023272:81820-81839 | Msa1407180:intron | 60.0% | |
| GCTGCTGCTGCTGATGCAGG+AGG | + | tig0023272:81823-81842 | Msa1407180:intron | 65.0% | |
| GCTGGGCCTGGATCCTCTCA+AGG | + | tig0023272:81981-82000 | Msa1407180:CDS | 65.0% | |
| GCTGCTGCTGCTGATGCAGG+AGG | + | tig0023272:81823-81842 | Msa1407180:intron | 65.0% | |
| GCTGGGCCTGGATCCTCTCA+AGG | + | tig0023272:81981-82000 | Msa1407180:CDS | 65.0% | |
| GAGGATCCAGGCCCAGCTCC+AGG | - | tig0023272:81978-81997 | None:intergenic | 70.0% | |
| GAGGATCCAGGCCCAGCTCC+AGG | - | tig0023272:81978-81997 | None:intergenic | 70.0% | |
| GGTGGACCTGGAGCTGGGCC+TGG | + | tig0023272:81969-81988 | Msa1407180:CDS | 75.0% | |
| GGTGGACCTGGAGCTGGGCC+TGG | + | tig0023272:81969-81988 | Msa1407180:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023272 | gene | 80887 | 82186 | 80887 | ID=Msa1407180;Name=Msa1407180 |
| tig0023272 | mRNA | 80887 | 82186 | 80887 | ID=Msa1407180-mRNA-1;Parent=Msa1407180;Name=Msa1407180-mRNA-1;_AED=0.15;_eAED=0.21;_QI=0|0|0|0.5|1|1|2|0|124 |
| tig0023272 | exon | 80887 | 80916 | 80887 | ID=Msa1407180-mRNA-1:exon:24935;Parent=Msa1407180-mRNA-1 |
| tig0023272 | exon | 81842 | 82186 | 81842 | ID=Msa1407180-mRNA-1:exon:24936;Parent=Msa1407180-mRNA-1 |
| tig0023272 | CDS | 80887 | 80916 | 80887 | ID=Msa1407180-mRNA-1:cds;Parent=Msa1407180-mRNA-1 |
| tig0023272 | CDS | 81842 | 82186 | 81842 | ID=Msa1407180-mRNA-1:cds;Parent=Msa1407180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
