Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329420 | G7JCS7 | 53.097 | 226 | 55 | 3 | 1 | 197 | 1 | 204 | 2.93e-34 | 130 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0627580 | Msa1329420 | 0.853016 | 3.156209e-61 | -8.615850e-47 |
| Msa0629440 | Msa1329420 | 0.915487 | 5.555563e-85 | -8.615850e-47 |
| Msa0667070 | Msa1329420 | 0.923458 | 2.587275e-89 | -8.615850e-47 |
| Msa0700490 | Msa1329420 | 0.806515 | 7.925177e-50 | -8.615850e-47 |
| Msa1304320 | Msa1329420 | 0.959286 | 2.831826e-117 | -8.615850e-47 |
| Msa1329350 | Msa1329420 | 0.964401 | 2.789142e-123 | -8.615850e-47 |
| Msa1329420 | Msa1329580 | 0.959372 | 2.273075e-117 | -8.615850e-47 |
| Msa1329420 | Msa1362000 | 0.825798 | 3.850832e-54 | -8.615850e-47 |
| Msa1329420 | Msa1379680 | 0.819838 | 9.409316e-53 | -8.615850e-47 |
| Msa1329420 | Msa1407180 | 0.801840 | 7.448464e-49 | -8.615850e-47 |
| Msa1329420 | Msa1412620 | 0.915669 | 4.470397e-85 | -8.615850e-47 |
| Msa0376340 | Msa1329420 | -0.800875 | 1.173898e-48 | -8.615850e-47 |
| Msa0390090 | Msa1329420 | 0.811090 | 8.329116e-51 | -8.615850e-47 |
| Msa0424780 | Msa1329420 | -0.807682 | 4.485962e-50 | -8.615850e-47 |
| Msa1041160 | Msa1329420 | 0.817668 | 2.925941e-52 | -8.615850e-47 |
| Msa0242820 | Msa1329420 | 0.857646 | 1.416343e-62 | -8.615850e-47 |
| Msa0269260 | Msa1329420 | 0.815377 | 9.535667e-52 | -8.615850e-47 |
| Msa0287640 | Msa1329420 | 0.824684 | 7.065310e-54 | -8.615850e-47 |
| Msa0287660 | Msa1329420 | 0.850246 | 1.922864e-60 | -8.615850e-47 |
| Msa1127170 | Msa1329420 | 0.814788 | 1.288861e-51 | -8.615850e-47 |
| Msa1204600 | Msa1329420 | 0.954049 | 7.079664e-112 | -8.615850e-47 |
| Msa1204770 | Msa1329420 | 0.962593 | 4.614165e-121 | -8.615850e-47 |
| Msa0516160 | Msa1329420 | -0.812084 | 5.065042e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1329420 | MtrunA17_Chr4g0053731 | 53.097 | 226 | 55 | 3 | 1 | 197 | 1 | 204 | 5.65e-38 | 130 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 90 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCTTGCTTGGTGCTGGAGC+TGG | 0.249954 | 8_4:+48003631 | None:intergenic |
| TTCTTTCCCTTGCTTGGTGC+TGG | 0.263309 | 8_4:+48003625 | None:intergenic |
| GGTGTTGTTGGTGTGGTTGT+AGG | 0.304465 | 8_4:+48003865 | None:intergenic |
| GGTGCTCCTGCTGGTGGTGC+TGG | 0.331916 | 8_4:+48003553 | None:intergenic |
| AGCAGCTGGAGGAGATGATT+TGG | 0.353606 | 8_4:+48003825 | None:intergenic |
| TTGTTCTTCTTTCCCTTGCT+TGG | 0.362413 | 8_4:+48003619 | None:intergenic |
| GGAGGTTTGGTTGCCGGAGC+AGG | 0.362636 | 8_4:+48003799 | None:intergenic |
| GTGGTGGCGGCCGGAGTTGA+TGG | 0.392958 | 8_4:+48003916 | None:intergenic |
| CACCACTCCTGTTGCATCTC+CGG | 0.398121 | 8_4:-48003899 | Msa1329420:intron |
| AGAGTGGAGCAGAAACTATC+AGG | 0.404075 | 8_4:-48002624 | Msa1329420:CDS |
| GCTGCCGGAGGTTTGGTTGC+CGG | 0.408047 | 8_4:+48003793 | None:intergenic |
| GCACCACCAGCAGGAGCACC+TGG | 0.414679 | 8_4:-48003550 | Msa1329420:CDS |
| CCTGCATCTTCGCTTGGTCC+AGG | 0.415878 | 8_4:+48003532 | None:intergenic |
| GCTGGTGGTGGAGTGCTGAC+TGG | 0.421414 | 8_4:+48003752 | None:intergenic |
| GCCGGAGCAGGTGCAGCAGC+TGG | 0.433970 | 8_4:+48003811 | None:intergenic |
| AGCACCATCACCAGCGTTGT+TGG | 0.436518 | 8_4:-48003581 | Msa1329420:CDS |
| GCACCATCACCAGCGTTGTT+GGG | 0.436941 | 8_4:-48003580 | Msa1329420:CDS |
| GCAGCTGGAGGAGATGATTT+GGG | 0.439226 | 8_4:+48003826 | None:intergenic |
| AGGTGACTGGCCTCCGACGC+CGG | 0.439946 | 8_4:+48003960 | None:intergenic |
| GGTGCTGGAGCTGGAACCGC+TGG | 0.440384 | 8_4:+48003640 | None:intergenic |
| AAGATTTACCTCATCGTTCG+CGG | 0.444163 | 8_4:+48003489 | None:intergenic |
| GCTCCTGCTGGTGGTGCTGG+TGG | 0.457667 | 8_4:+48003556 | None:intergenic |
| TGCATTATCGTCGCCGGCGT+CGG | 0.458092 | 8_4:-48003973 | Msa1329420:CDS |
| TCCAGCTGCTGCACCTGCTC+CGG | 0.458206 | 8_4:-48003812 | Msa1329420:CDS |
| CTTGGTCCAGGTGCTCCTGC+TGG | 0.461592 | 8_4:+48003544 | None:intergenic |
| TGGTGATGCTGCCGGAGGTT+TGG | 0.463953 | 8_4:+48003786 | None:intergenic |
| TTGGGAGAAGCAACGGGAGC+TGG | 0.468676 | 8_4:+48003844 | None:intergenic |
| TTGGTGCAGCGGAAGGTGAC+TGG | 0.475188 | 8_4:+48003947 | None:intergenic |
| ACAGGAACTGGTGCTGGTGG+TGG | 0.475601 | 8_4:+48003740 | None:intergenic |
| AGGCTTAGCTTTGAGCTGGA+TGG | 0.476021 | 8_4:-48002584 | Msa1329420:CDS |
| GGTGGTGATTTGACAGGAAC+TGG | 0.477818 | 8_4:+48003728 | None:intergenic |
| GGTGCTCCTGCATCTTCGCT+TGG | 0.481476 | 8_4:+48003526 | None:intergenic |
| AGCGAAGATGCAGGAGCACC+TGG | 0.485174 | 8_4:-48003523 | Msa1329420:CDS |
| CTCATCGTTCGCGGTAGAAG+CGG | 0.489228 | 8_4:+48003498 | None:intergenic |
| GCAACGGGAGCTGGTGTTGT+TGG | 0.490912 | 8_4:+48003853 | None:intergenic |
| GATGATTTGGGAGAAGCAAC+GGG | 0.491381 | 8_4:+48003838 | None:intergenic |
| GCTGCTACCGGAGATGCAAC+AGG | 0.501881 | 8_4:+48003892 | None:intergenic |
| GCAACAGGAGTGGTGGCGGC+CGG | 0.507920 | 8_4:+48003907 | None:intergenic |
| TCCAGCTCCAGCACCAAGCA+AGG | 0.510907 | 8_4:-48003632 | Msa1329420:CDS |
| GGAGTTGATGGTGAGGTGGT+TGG | 0.517435 | 8_4:+48003928 | None:intergenic |
| GTGGTGGTTGGAGCAGCCAC+AGG | 0.519021 | 8_4:+48003664 | None:intergenic |
| GGTGGTGAGCTGACTGGAGT+AGG | 0.519043 | 8_4:+48003701 | None:intergenic |
| CCTGGACCAAGCGAAGATGC+AGG | 0.520602 | 8_4:-48003532 | Msa1329420:CDS |
| GGTCCAGGTGCTCCTGCTGG+TGG | 0.523649 | 8_4:+48003547 | None:intergenic |
| AGCTGGAACCGCTGGTGTGG+TGG | 0.532724 | 8_4:+48003648 | None:intergenic |
| ACTGCTGGTGGTGAGCTGAC+TGG | 0.534197 | 8_4:+48003695 | None:intergenic |
| GGAACCGCTGGTGTGGTGGT+TGG | 0.535849 | 8_4:+48003652 | None:intergenic |
| AACCACCTCACCATCAACTC+CGG | 0.540937 | 8_4:-48003926 | Msa1329420:CDS |
| AGATGATTTGGGAGAAGCAA+CGG | 0.541525 | 8_4:+48003837 | None:intergenic |
| GAGGTGGTTGGTGCAGCGGA+AGG | 0.541625 | 8_4:+48003940 | None:intergenic |
| AACAACGCTGGTGATGGTGC+TGG | 0.542731 | 8_4:+48003583 | None:intergenic |
| AGATGCAACAGGAGTGGTGG+CGG | 0.543847 | 8_4:+48003903 | None:intergenic |
| GTTGTTGGTGTGGTTGTAGG+AGG | 0.547446 | 8_4:+48003868 | None:intergenic |
| TAGGAGGCTTAGCTTTGAGC+TGG | 0.549247 | 8_4:-48002588 | Msa1329420:CDS |
| TGGAGCTGGAACCGCTGGTG+TGG | 0.549390 | 8_4:+48003645 | None:intergenic |
| GAGCTGACTGGAGTAGGTGT+GGG | 0.550496 | 8_4:+48003707 | None:intergenic |
| GGTCCACCAGCACCACCAGC+AGG | 0.553644 | 8_4:-48003559 | Msa1329420:CDS |
| GGAGCAGGTGCAGCAGCTGG+AGG | 0.554589 | 8_4:+48003814 | None:intergenic |
| TTCATCTGCATTATCGTCGC+CGG | 0.560042 | 8_4:-48003979 | Msa1329420:CDS |
| TGCTCCGGCAACCAAACCTC+CGG | 0.560313 | 8_4:-48003797 | Msa1329420:CDS |
| GGCCGGAGTTGATGGTGAGG+TGG | 0.565131 | 8_4:+48003924 | None:intergenic |
| ACCTCCGGCAGCATCACCAC+CGG | 0.566788 | 8_4:-48003782 | Msa1329420:CDS |
| GGACCCAACAACGCTGGTGA+TGG | 0.568484 | 8_4:+48003577 | None:intergenic |
| GATTTGACAGGAACTGGTGC+TGG | 0.568714 | 8_4:+48003734 | None:intergenic |
| TGAGCTGACTGGAGTAGGTG+TGG | 0.570354 | 8_4:+48003706 | None:intergenic |
| ATTATCGTCGCCGGCGTCGG+AGG | 0.579627 | 8_4:-48003970 | Msa1329420:CDS |
| CGGAGATGCAACAGGAGTGG+TGG | 0.583940 | 8_4:+48003900 | None:intergenic |
| AGTGCTGACTGGTGTCCCGC+CGG | 0.584005 | 8_4:+48003763 | None:intergenic |
| GCTGACTGGTGTCCCGCCGG+TGG | 0.599671 | 8_4:+48003766 | None:intergenic |
| TCCGGCAGCATCACCACCGG+CGG | 0.605271 | 8_4:-48003779 | Msa1329420:CDS |
| TGCTCCAACCACCACACCAG+CGG | 0.608500 | 8_4:-48003656 | Msa1329420:CDS |
| TGGTGAGGTGGTTGGTGCAG+CGG | 0.610327 | 8_4:+48003936 | None:intergenic |
| CCGGCAGCATCACCACCGGC+GGG | 0.611687 | 8_4:-48003778 | Msa1329420:CDS |
| GGGAGCTGGTGTTGTTGGTG+TGG | 0.611766 | 8_4:+48003858 | None:intergenic |
| TTGACAGGAACTGGTGCTGG+TGG | 0.617477 | 8_4:+48003737 | None:intergenic |
| CTGACTGGAGTAGGTGTGGG+TGG | 0.619650 | 8_4:+48003710 | None:intergenic |
| CGATAATGCAGATGAATGCG+AGG | 0.621043 | 8_4:+48003986 | None:intergenic |
| GCCGGTGGTGATGCTGCCGG+AGG | 0.626872 | 8_4:+48003781 | None:intergenic |
| ATCAGGAGCTTGAAGATGCT+AGG | 0.627021 | 8_4:-48002607 | Msa1329420:CDS |
| GGCGGCCGGAGTTGATGGTG+AGG | 0.629145 | 8_4:+48003921 | None:intergenic |
| CAGGTGTTACTTACTGCTGG+TGG | 0.634643 | 8_4:+48003683 | None:intergenic |
| TACCGGAGATGCAACAGGAG+TGG | 0.639684 | 8_4:+48003897 | None:intergenic |
| GGAAAGAAGAACAAGAAGCA+CGG | 0.641441 | 8_4:-48003610 | Msa1329420:CDS |
| CCAGCTCCAGCACCAAGCAA+GGG | 0.643686 | 8_4:-48003631 | Msa1329420:CDS |
| GCTGGTGGACCCAACAACGC+TGG | 0.656094 | 8_4:+48003571 | None:intergenic |
| CGCTTCTACCGCGAACGATG+AGG | 0.660407 | 8_4:-48003497 | Msa1329420:intron |
| GGTGTGGGTGGTGATTTGAC+AGG | 0.660565 | 8_4:+48003722 | None:intergenic |
| AGGAGCTTGAAGATGCTAGG+AGG | 0.675654 | 8_4:-48002604 | Msa1329420:CDS |
| GATAATGCAGATGAATGCGA+GGG | 0.678738 | 8_4:+48003987 | None:intergenic |
| CCAGCAGTAAGTAACACCTG+TGG | 0.762801 | 8_4:-48003680 | Msa1329420:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAATTTATATTTATAT+TGG | + | chr8_4:48003319-48003338 | None:intergenic | 0.0% |
| !!! | ATTACTTTCTTTTTAAAATA+AGG | + | chr8_4:48003110-48003129 | None:intergenic | 10.0% |
| !! | AATAAGAATAAAAAAAAAGA+TGG | + | chr8_4:48003653-48003672 | None:intergenic | 10.0% |
| !!! | CTTTTTTTTTATTCTTATTT+TGG | - | chr8_4:48003654-48003673 | Msa1329420:CDS | 10.0% |
| !!! | TTGTATAGATATATAAATTT+TGG | - | chr8_4:48003926-48003945 | Msa1329420:CDS | 10.0% |
| !! | AAATAAGGTTATAAAGATAA+AGG | - | chr8_4:48003012-48003031 | Msa1329420:intron | 15.0% |
| !! | AATAAGGTTATAAAGATAAA+GGG | - | chr8_4:48003013-48003032 | Msa1329420:intron | 15.0% |
| !! | TAAATATATTGTTCATACAA+TGG | - | chr8_4:48003160-48003179 | Msa1329420:intron | 15.0% |
| !!! | TTTTATTTTCAGACCTAATA+AGG | + | chr8_4:48002864-48002883 | None:intergenic | 20.0% |
| !!! | ATTTTATTCATATTTGGATC+TGG | + | chr8_4:48002987-48003006 | None:intergenic | 20.0% |
| !!! | TAGAAATATGTTCATAGTTT+TGG | - | chr8_4:48003056-48003075 | Msa1329420:intron | 20.0% |
| !! | ATAGTAGTATATGTCTATTT+AGG | + | chr8_4:48003134-48003153 | None:intergenic | 20.0% |
| !! | GTATGATTATAAAACAATGA+TGG | - | chr8_4:48003439-48003458 | Msa1329420:intron | 20.0% |
| !!! | AGAAATTTCAAGATTTGTTT+TGG | + | chr8_4:48003480-48003499 | None:intergenic | 20.0% |
| !!! | TATTATTTTTGAAAATGCTG+TGG | - | chr8_4:48003767-48003786 | Msa1329420:CDS | 20.0% |
| ! | ATAGTTAACATAGTACAATG+TGG | - | chr8_4:48002711-48002730 | Msa1329420:intron | 25.0% |
| ! | CTAACCAAAATCTAAGTTTA+AGG | - | chr8_4:48002794-48002813 | Msa1329420:intron | 25.0% |
| ! | ACCATAAAAAGAAGAGTAAT+TGG | - | chr8_4:48002896-48002915 | Msa1329420:intron | 25.0% |
| !! | ACCAATTACTCTTCTTTTTA+TGG | + | chr8_4:48002900-48002919 | None:intergenic | 25.0% |
| !!! | ATGAAATGATGTTAGTTTTC+TGG | - | chr8_4:48003371-48003390 | Msa1329420:intron | 25.0% |
| ! | CAATGATGGTTAATGTTAAT+CGG | - | chr8_4:48003453-48003472 | Msa1329420:intron | 25.0% |
| !!! | TTCTTATTTTGGCTATCTTA+TGG | - | chr8_4:48003665-48003684 | Msa1329420:CDS | 25.0% |
| !!! | TCTTATTTTGGCTATCTTAT+GGG | - | chr8_4:48003666-48003685 | Msa1329420:CDS | 25.0% |
| ! | AATGCTAGATATCAGAATAA+TGG | + | chr8_4:48003824-48003843 | None:intergenic | 25.0% |
| !! | TTACAAATTGAGGGATTTTA+CGG | + | chr8_4:48003987-48004006 | None:intergenic | 25.0% |
| ! | CACACCTTAAACTTAGATTT+TGG | + | chr8_4:48002801-48002820 | None:intergenic | 30.0% |
| TATTCATATTTGGATCTGGA+TGG | + | chr8_4:48002983-48003002 | None:intergenic | 30.0% | |
| AATAACAGTTACTGATGATC+TGG | - | chr8_4:48003200-48003219 | Msa1329420:intron | 30.0% | |
| ATAACAGTTACTGATGATCT+GGG | - | chr8_4:48003201-48003220 | Msa1329420:intron | 30.0% | |
| !!! | TGTTCCATTTTTTTTCAGAG+TGG | - | chr8_4:48003501-48003520 | Msa1329420:CDS | 30.0% |
| !! | GTTGTTTTATTCTTCTAGTC+TGG | - | chr8_4:48003582-48003601 | Msa1329420:CDS | 30.0% |
| AGAGTGTGATAATAAGATCA+AGG | + | chr8_4:48003616-48003635 | None:intergenic | 30.0% | |
| ATAGTATCATAGATGTCTCA+AGG | + | chr8_4:48003735-48003754 | None:intergenic | 30.0% | |
| ! | CTGTGGTCATATTTTATTCT+TGG | - | chr8_4:48003784-48003803 | Msa1329420:CDS | 30.0% |
| ! | TACAAATTGAGGGATTTTAC+GGG | + | chr8_4:48003986-48004005 | None:intergenic | 30.0% |
| ! | AAGATAAAGGGTGTACTATC+TGG | - | chr8_4:48003025-48003044 | Msa1329420:intron | 35.0% |
| ! | TGCTCCACTCTGAAAAAAAA+TGG | + | chr8_4:48003508-48003527 | None:intergenic | 35.0% |
| AATGCGAGCTTACAAATTGA+GGG | + | chr8_4:48003996-48004015 | None:intergenic | 35.0% | |
| AAATGCGAGCTTACAAATTG+AGG | + | chr8_4:48003997-48004016 | None:intergenic | 35.0% | |
| GATAATGCAGATGAATGCGA+GGG | + | chr8_4:48002157-48002176 | None:intergenic | 40.0% | |
| ! | AGATGATTTGGGAGAAGCAA+CGG | + | chr8_4:48002307-48002326 | None:intergenic | 40.0% |
| TTGTTCTTCTTTCCCTTGCT+TGG | + | chr8_4:48002525-48002544 | None:intergenic | 40.0% | |
| GGAAAGAAGAACAAGAAGCA+CGG | - | chr8_4:48002531-48002550 | Msa1329420:intron | 40.0% | |
| AAGATTTACCTCATCGTTCG+CGG | + | chr8_4:48002655-48002674 | None:intergenic | 40.0% | |
| !!! | GAGCTGTCGTTTTTGTTTTC+TGG | - | chr8_4:48002945-48002964 | Msa1329420:intron | 40.0% |
| CGATAATGCAGATGAATGCG+AGG | + | chr8_4:48002158-48002177 | None:intergenic | 45.0% | |
| TTCATCTGCATTATCGTCGC+CGG | - | chr8_4:48002162-48002181 | Msa1329420:intron | 45.0% | |
| ! | GATGATTTGGGAGAAGCAAC+GGG | + | chr8_4:48002306-48002325 | None:intergenic | 45.0% |
| GGTGTAGGAGACACCTTATT+AGG | - | chr8_4:48002848-48002867 | Msa1329420:intron | 45.0% | |
| AGAGTGGAGCAGAAACTATC+AGG | - | chr8_4:48003517-48003536 | Msa1329420:CDS | 45.0% | |
| ATCAGGAGCTTGAAGATGCT+AGG | - | chr8_4:48003534-48003553 | Msa1329420:CDS | 45.0% | |
| GTGAGTATGTGACTGCTTGA+CGG | - | chr8_4:48003878-48003897 | Msa1329420:intron | 45.0% | |
| ! | GGGATTTTACGGGAAAAGAC+AGG | + | chr8_4:48003976-48003995 | None:intergenic | 45.0% |
| !!! | TTATTTATTTTATTCATATT+TGG | + | chr8_4:48002993-48003012 | None:intergenic | 5.0% |
| !! | TGAATAAAATAAATAAAATA+AGG | - | chr8_4:48002997-48003016 | Msa1329420:intron | 5.0% |
| AACCACCTCACCATCAACTC+CGG | - | chr8_4:48002215-48002234 | Msa1329420:intron | 50.0% | |
| GTTGTTGGTGTGGTTGTAGG+AGG | + | chr8_4:48002276-48002295 | None:intergenic | 50.0% | |
| !! | GGTGTTGTTGGTGTGGTTGT+AGG | + | chr8_4:48002279-48002298 | None:intergenic | 50.0% |
| GCAGCTGGAGGAGATGATTT+GGG | + | chr8_4:48002318-48002337 | None:intergenic | 50.0% | |
| AGCAGCTGGAGGAGATGATT+TGG | + | chr8_4:48002319-48002338 | None:intergenic | 50.0% | |
| GATTTGACAGGAACTGGTGC+TGG | + | chr8_4:48002410-48002429 | None:intergenic | 50.0% | |
| GGTGGTGATTTGACAGGAAC+TGG | + | chr8_4:48002416-48002435 | None:intergenic | 50.0% | |
| !! | CAGGTGTTACTTACTGCTGG+TGG | + | chr8_4:48002461-48002480 | None:intergenic | 50.0% |
| !! | CCACAGGTGTTACTTACTGC+TGG | + | chr8_4:48002464-48002483 | None:intergenic | 50.0% |
| CCAGCAGTAAGTAACACCTG+TGG | - | chr8_4:48002461-48002480 | Msa1329420:intron | 50.0% | |
| !! | TTCTTTCCCTTGCTTGGTGC+TGG | + | chr8_4:48002519-48002538 | None:intergenic | 50.0% |
| AGGAGCTTGAAGATGCTAGG+AGG | - | chr8_4:48003537-48003556 | Msa1329420:CDS | 50.0% | |
| !! | TAGGAGGCTTAGCTTTGAGC+TGG | - | chr8_4:48003553-48003572 | Msa1329420:CDS | 50.0% |
| !! | AGGCTTAGCTTTGAGCTGGA+TGG | - | chr8_4:48003557-48003576 | Msa1329420:CDS | 50.0% |
| !! | GGAGTTGATGGTGAGGTGGT+TGG | + | chr8_4:48002216-48002235 | None:intergenic | 55.0% |
| AGATGCAACAGGAGTGGTGG+CGG | + | chr8_4:48002241-48002260 | None:intergenic | 55.0% | |
| CACCACTCCTGTTGCATCTC+CGG | - | chr8_4:48002242-48002261 | Msa1329420:intron | 55.0% | |
| TACCGGAGATGCAACAGGAG+TGG | + | chr8_4:48002247-48002266 | None:intergenic | 55.0% | |
| !! | GTTGTAGGAGGTGCTGCTAC+CGG | + | chr8_4:48002264-48002283 | None:intergenic | 55.0% |
| ! | TTGACAGGAACTGGTGCTGG+TGG | + | chr8_4:48002407-48002426 | None:intergenic | 55.0% |
| GGTGTGGGTGGTGATTTGAC+AGG | + | chr8_4:48002422-48002441 | None:intergenic | 55.0% | |
| GAGCTGACTGGAGTAGGTGT+GGG | + | chr8_4:48002437-48002456 | None:intergenic | 55.0% | |
| TGAGCTGACTGGAGTAGGTG+TGG | + | chr8_4:48002438-48002457 | None:intergenic | 55.0% | |
| !! | AACAACGCTGGTGATGGTGC+TGG | + | chr8_4:48002561-48002580 | None:intergenic | 55.0% |
| AGCACCATCACCAGCGTTGT+TGG | - | chr8_4:48002560-48002579 | Msa1329420:intron | 55.0% | |
| GCACCATCACCAGCGTTGTT+GGG | - | chr8_4:48002561-48002580 | Msa1329420:intron | 55.0% | |
| TCATCGTTCGCGGTAGAAGC+GGG | + | chr8_4:48002645-48002664 | None:intergenic | 55.0% | |
| CTCATCGTTCGCGGTAGAAG+CGG | + | chr8_4:48002646-48002665 | None:intergenic | 55.0% | |
| TACACCGAACCCACCGTCAA+TGG | + | chr8_4:48002834-48002853 | None:intergenic | 55.0% | |
| !! | ATTGACGGTGGGTTCGGTGT+AGG | - | chr8_4:48002833-48002852 | Msa1329420:intron | 55.0% |
| TGCATTATCGTCGCCGGCGT+CGG | - | chr8_4:48002168-48002187 | Msa1329420:intron | 60.0% | |
| TTGGTGCAGCGGAAGGTGAC+TGG | + | chr8_4:48002197-48002216 | None:intergenic | 60.0% | |
| ! | TGGTGAGGTGGTTGGTGCAG+CGG | + | chr8_4:48002208-48002227 | None:intergenic | 60.0% |
| CGGAGATGCAACAGGAGTGG+TGG | + | chr8_4:48002244-48002263 | None:intergenic | 60.0% | |
| GCTGCTACCGGAGATGCAAC+AGG | + | chr8_4:48002252-48002271 | None:intergenic | 60.0% | |
| !! | GGGAGCTGGTGTTGTTGGTG+TGG | + | chr8_4:48002286-48002305 | None:intergenic | 60.0% |
| !! | GCAACGGGAGCTGGTGTTGT+TGG | + | chr8_4:48002291-48002310 | None:intergenic | 60.0% |
| TTGGGAGAAGCAACGGGAGC+TGG | + | chr8_4:48002300-48002319 | None:intergenic | 60.0% | |
| TGCTCCGGCAACCAAACCTC+CGG | - | chr8_4:48002344-48002363 | Msa1329420:intron | 60.0% | |
| ! | TGGTGATGCTGCCGGAGGTT+TGG | + | chr8_4:48002358-48002377 | None:intergenic | 60.0% |
| !! | ACAGGAACTGGTGCTGGTGG+TGG | + | chr8_4:48002404-48002423 | None:intergenic | 60.0% |
| CTGACTGGAGTAGGTGTGGG+TGG | + | chr8_4:48002434-48002453 | None:intergenic | 60.0% | |
| GGTGGTGAGCTGACTGGAGT+AGG | + | chr8_4:48002443-48002462 | None:intergenic | 60.0% | |
| ! | ACTGCTGGTGGTGAGCTGAC+TGG | + | chr8_4:48002449-48002468 | None:intergenic | 60.0% |
| TGCTCCAACCACCACACCAG+CGG | - | chr8_4:48002485-48002504 | Msa1329420:intron | 60.0% | |
| TCCAGCTCCAGCACCAAGCA+AGG | - | chr8_4:48002509-48002528 | Msa1329420:intron | 60.0% | |
| CCAGCTCCAGCACCAAGCAA+GGG | - | chr8_4:48002510-48002529 | Msa1329420:intron | 60.0% | |
| GGACCCAACAACGCTGGTGA+TGG | + | chr8_4:48002567-48002586 | None:intergenic | 60.0% | |
| CCTGCATCTTCGCTTGGTCC+AGG | + | chr8_4:48002612-48002631 | None:intergenic | 60.0% | |
| CCTGGACCAAGCGAAGATGC+AGG | - | chr8_4:48002609-48002628 | Msa1329420:CDS | 60.0% | |
| GGTGCTCCTGCATCTTCGCT+TGG | + | chr8_4:48002618-48002637 | None:intergenic | 60.0% | |
| !! | AGCGAAGATGCAGGAGCACC+TGG | - | chr8_4:48002618-48002637 | Msa1329420:CDS | 60.0% |
| CGCTTCTACCGCGAACGATG+AGG | - | chr8_4:48002644-48002663 | Msa1329420:intron | 60.0% | |
| ! | GCCACCATTGACGGTGGGTT+CGG | - | chr8_4:48002827-48002846 | Msa1329420:intron | 60.0% |
| ACCGAACCCACCGTCAATGG+TGG | + | chr8_4:48002831-48002850 | None:intergenic | 60.0% | |
| ! | ATTATCGTCGCCGGCGTCGG+AGG | - | chr8_4:48002171-48002190 | Msa1329420:intron | 65.0% |
| ! | GAGGTGGTTGGTGCAGCGGA+AGG | + | chr8_4:48002204-48002223 | None:intergenic | 65.0% |
| !! | GGCCGGAGTTGATGGTGAGG+TGG | + | chr8_4:48002220-48002239 | None:intergenic | 65.0% |
| TCCAGCTGCTGCACCTGCTC+CGG | - | chr8_4:48002329-48002348 | Msa1329420:intron | 65.0% | |
| ! | GGAGGTTTGGTTGCCGGAGC+AGG | + | chr8_4:48002345-48002364 | None:intergenic | 65.0% |
| ! | GCTGCCGGAGGTTTGGTTGC+CGG | + | chr8_4:48002351-48002370 | None:intergenic | 65.0% |
| ACCTCCGGCAGCATCACCAC+CGG | - | chr8_4:48002359-48002378 | Msa1329420:intron | 65.0% | |
| !! | AGTGCTGACTGGTGTCCCGC+CGG | + | chr8_4:48002381-48002400 | None:intergenic | 65.0% |
| !! | GCTGGTGGTGGAGTGCTGAC+TGG | + | chr8_4:48002392-48002411 | None:intergenic | 65.0% |
| GTGGTGGTTGGAGCAGCCAC+AGG | + | chr8_4:48002480-48002499 | None:intergenic | 65.0% | |
| GGAACCGCTGGTGTGGTGGT+TGG | + | chr8_4:48002492-48002511 | None:intergenic | 65.0% | |
| AGCTGGAACCGCTGGTGTGG+TGG | + | chr8_4:48002496-48002515 | None:intergenic | 65.0% | |
| TGGAGCTGGAACCGCTGGTG+TGG | + | chr8_4:48002499-48002518 | None:intergenic | 65.0% | |
| !! | CCCTTGCTTGGTGCTGGAGC+TGG | + | chr8_4:48002513-48002532 | None:intergenic | 65.0% |
| ! | GCTGGTGGACCCAACAACGC+TGG | + | chr8_4:48002573-48002592 | None:intergenic | 65.0% |
| CTTGGTCCAGGTGCTCCTGC+TGG | + | chr8_4:48002600-48002619 | None:intergenic | 65.0% | |
| TTCGCGGTAGAAGCGGGTCC+AGG | + | chr8_4:48002639-48002658 | None:intergenic | 65.0% | |
| GTGCCACGCGCCACCATTGA+CGG | - | chr8_4:48002818-48002837 | Msa1329420:intron | 65.0% | |
| CACGCGCCACCATTGACGGT+GGG | - | chr8_4:48002822-48002841 | Msa1329420:intron | 65.0% | |
| !! | AGGTGACTGGCCTCCGACGC+CGG | + | chr8_4:48002184-48002203 | None:intergenic | 70.0% |
| !! | GGCGGCCGGAGTTGATGGTG+AGG | + | chr8_4:48002223-48002242 | None:intergenic | 70.0% |
| !! | GTGGTGGCGGCCGGAGTTGA+TGG | + | chr8_4:48002228-48002247 | None:intergenic | 70.0% |
| !! | GCAACAGGAGTGGTGGCGGC+CGG | + | chr8_4:48002237-48002256 | None:intergenic | 70.0% |
| GGAGCAGGTGCAGCAGCTGG+AGG | + | chr8_4:48002330-48002349 | None:intergenic | 70.0% | |
| TCCGGCAGCATCACCACCGG+CGG | - | chr8_4:48002362-48002381 | Msa1329420:intron | 70.0% | |
| ! | GGTGCTGGAGCTGGAACCGC+TGG | + | chr8_4:48002504-48002523 | None:intergenic | 70.0% |
| GGTCCACCAGCACCACCAGC+AGG | - | chr8_4:48002582-48002601 | Msa1329420:CDS | 70.0% | |
| ! | GCTCCTGCTGGTGGTGCTGG+TGG | + | chr8_4:48002588-48002607 | None:intergenic | 70.0% |
| ! | GGTGCTCCTGCTGGTGGTGC+TGG | + | chr8_4:48002591-48002610 | None:intergenic | 70.0% |
| !! | GCACCACCAGCAGGAGCACC+TGG | - | chr8_4:48002591-48002610 | Msa1329420:CDS | 70.0% |
| GGTCCAGGTGCTCCTGCTGG+TGG | + | chr8_4:48002597-48002616 | None:intergenic | 70.0% | |
| ! | CCACCGTCAATGGTGGCGCG+TGG | + | chr8_4:48002824-48002843 | None:intergenic | 70.0% |
| CCACGCGCCACCATTGACGG+TGG | - | chr8_4:48002821-48002840 | Msa1329420:intron | 70.0% | |
| GCCGGAGCAGGTGCAGCAGC+TGG | + | chr8_4:48002333-48002352 | None:intergenic | 75.0% | |
| ! | GCCGGTGGTGATGCTGCCGG+AGG | + | chr8_4:48002363-48002382 | None:intergenic | 75.0% |
| ! | CCCGCCGGTGGTGATGCTGC+CGG | + | chr8_4:48002366-48002385 | None:intergenic | 75.0% |
| CCGGCAGCATCACCACCGGC+GGG | - | chr8_4:48002363-48002382 | Msa1329420:intron | 75.0% | |
| GCTGACTGGTGTCCCGCCGG+TGG | + | chr8_4:48002378-48002397 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 48002132 | 48004031 | 48002132 | ID=Msa1329420;Name=Msa1329420 |
| chr8_4 | mRNA | 48002132 | 48004031 | 48002132 | ID=Msa1329420-mRNA-1;Parent=Msa1329420;Name=Msa1329420-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.25|0|0.8|0|0|5|0|198 |
| chr8_4 | exon | 48003900 | 48004031 | 48003900 | ID=Msa1329420-mRNA-1:exon:13780;Parent=Msa1329420-mRNA-1 |
| chr8_4 | exon | 48003697 | 48003892 | 48003697 | ID=Msa1329420-mRNA-1:exon:13779;Parent=Msa1329420-mRNA-1 |
| chr8_4 | exon | 48003498 | 48003691 | 48003498 | ID=Msa1329420-mRNA-1:exon:13778;Parent=Msa1329420-mRNA-1 |
| chr8_4 | exon | 48002579 | 48002644 | 48002579 | ID=Msa1329420-mRNA-1:exon:13777;Parent=Msa1329420-mRNA-1 |
| chr8_4 | exon | 48002132 | 48002137 | 48002132 | ID=Msa1329420-mRNA-1:exon:13776;Parent=Msa1329420-mRNA-1 |
| chr8_4 | CDS | 48003900 | 48004031 | 48003900 | ID=Msa1329420-mRNA-1:cds;Parent=Msa1329420-mRNA-1 |
| chr8_4 | CDS | 48003697 | 48003892 | 48003697 | ID=Msa1329420-mRNA-1:cds;Parent=Msa1329420-mRNA-1 |
| chr8_4 | CDS | 48003498 | 48003691 | 48003498 | ID=Msa1329420-mRNA-1:cds;Parent=Msa1329420-mRNA-1 |
| chr8_4 | CDS | 48002579 | 48002644 | 48002579 | ID=Msa1329420-mRNA-1:cds;Parent=Msa1329420-mRNA-1 |
| chr8_4 | CDS | 48002132 | 48002137 | 48002132 | ID=Msa1329420-mRNA-1:cds;Parent=Msa1329420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
