AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0627580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0627580 MtrunA17_Chr2g0295241 95.556 450 12 1 136 577 3 452 0.0 878
Msa0627580 MtrunA17_Chr4g0067811 72.196 428 109 2 145 562 13 440 0.0 638
Msa0627580 MtrunA17_Chr7g0270821 51.556 450 202 5 129 567 3 447 8.29e-161 467
Msa0627580 MtrunA17_Chr1g0193961 55.808 396 164 3 166 553 39 431 2.25e-155 453
Msa0627580 MtrunA17_Chr8g0387391 48.866 397 194 2 166 553 40 436 2.33e-137 407
Msa0627580 MtrunA17_Chr7g0255311 45.516 446 227 5 121 553 16 458 6.98e-136 404
Msa0627580 MtrunA17_Chr1g0202651 47.445 411 203 3 156 553 37 447 4.40e-135 402
Msa0627580 MtrunA17_Chr3g0095221 47.942 413 193 5 166 564 43 447 2.17e-131 391
Msa0627580 MtrunA17_Chr1g0202641 46.065 432 214 4 141 553 16 447 2.79e-129 402
Msa0627580 MtrunA17_Chr1g0202641 46.898 403 205 2 161 554 546 948 2.18e-125 392
Msa0627580 MtrunA17_Chr7g0248451 45.146 412 215 3 163 564 48 458 1.78e-127 382
Msa0627580 MtrunA17_Chr1g0202621 47.000 400 197 3 163 553 41 434 3.32e-127 381
Msa0627580 MtrunA17_Chr8g0348491 44.091 440 234 3 137 564 19 458 9.18e-126 378
Msa0627580 MtrunA17_Chr3g0130251 44.789 451 238 3 122 564 28 475 1.86e-122 369
Msa0627580 MtrunA17_Chr5g0442221 46.101 436 218 6 133 553 5 438 2.77e-121 365
Msa0627580 MtrunA17_Chr4g0070281 40.724 442 247 5 122 553 32 468 4.59e-118 358
Msa0627580 MtrunA17_Chr2g0301091 41.553 438 243 5 126 553 15 449 1.98e-115 351
Msa0627580 MtrunA17_Chr2g0319881 53.801 171 70 2 136 298 10 179 3.58e-52 176
Msa0627580 MtrunA17_Chr8g0365901 25.183 409 257 15 170 561 65 441 1.72e-19 91.7
Msa0627580 MtrunA17_Chr6g0449961 27.273 308 195 9 162 464 37 320 2.08e-18 87.8
Msa0627580 MtrunA17_Chr5g0418411 26.959 319 187 10 171 473 30 318 1.19e-17 85.5
Msa0627580 MtrunA17_Chr3g0121891 25.967 362 227 11 172 523 31 361 1.80e-17 84.7
Msa0627580 MtrunA17_Chr7g0258111 27.358 424 229 19 163 553 41 418 2.28e-17 85.1
Msa0627580 MtrunA17_Chr1g0173451 21.655 411 249 11 156 538 58 423 1.44e-16 82.4
Msa0627580 MtrunA17_Chr5g0413141 25.786 318 194 12 161 460 47 340 3.33e-16 81.3
Msa0627580 MtrunA17_Chr6g0468871 42.857 77 44 0 355 431 22 98 3.58e-16 74.3
Msa0627580 MtrunA17_Chr7g0230891 25.377 398 243 17 171 550 38 399 5.06e-16 80.5
Msa0627580 MtrunA17_Chr4g0020771 22.111 398 239 10 170 538 74 429 6.29e-15 77.4
Msa0627580 MtrunA17_Chr5g0413411 24.148 352 185 11 161 464 110 427 1.27e-14 76.6
Msa0627580 MtrunA17_Chr6g0461181 23.788 433 262 15 166 553 27 436 2.49e-14 75.5
Msa0627580 MtrunA17_Chr4g0052621 27.640 322 188 11 164 464 55 352 4.83e-14 74.7
Msa0627580 MtrunA17_Chr1g0194231 25.157 318 187 9 170 464 81 370 5.53e-14 74.7
Msa0627580 MtrunA17_Chr8g0337571 25.902 305 183 10 171 464 32 304 6.86e-14 73.6
Msa0627580 MtrunA17_Chr4g0043661 26.280 293 183 11 171 455 24 291 2.04e-13 72.4
Msa0627580 MtrunA17_Chr2g0303941 25.189 397 249 14 169 550 27 390 1.01e-12 70.1
Msa0627580 MtrunA17_Chr3g0089021 22.980 396 257 11 161 538 59 424 2.38e-12 69.3
Msa0627580 MtrunA17_Chr3g0121881 24.834 302 184 9 264 550 125 398 2.52e-12 68.9
Msa0627580 MtrunA17_Chr2g0332801 28.643 199 118 5 275 464 157 340 6.69e-12 67.8
Msa0627580 MtrunA17_Chr3g0100091 24.483 290 191 7 264 548 76 342 7.47e-12 67.0
Msa0627580 MtrunA17_Chr8g0337581 25.817 306 181 12 172 464 33 305 1.54e-11 66.6
Msa0627580 MtrunA17_Chr6g0468861 46.429 56 30 0 468 523 14 69 2.32e-11 60.1
Msa0627580 MtrunA17_Chr2g0293681 26.316 323 197 13 160 465 57 355 4.96e-11 65.1
Msa0627580 MtrunA17_Chr4g0043431 24.557 395 252 16 171 550 36 399 6.47e-11 64.7
Msa0627580 MtrunA17_Chr1g0150291 27.365 296 182 11 169 455 44 315 8.30e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0627580 AT3G16850.1 62.642 439 149 4 136 565 5 437 0.0 565
Msa0627580 AT3G06770.5 62.529 435 149 4 133 553 1 435 0.0 547
Msa0627580 AT3G06770.2 62.442 434 149 4 134 553 1 434 0.0 545
Msa0627580 AT5G49215.1 63.923 413 139 3 151 553 24 436 0.0 534
Msa0627580 AT5G49215.2 63.923 413 139 3 151 553 22 434 0.0 534
Msa0627580 AT3G06770.1 64.011 364 123 1 198 553 2 365 9.73e-166 476
Msa0627580 AT3G06770.3 64.011 364 123 1 198 553 2 365 9.73e-166 476
Msa0627580 AT3G62110.1 52.083 432 196 4 133 553 5 436 6.71e-157 457
Msa0627580 AT3G62110.2 52.083 432 196 4 133 553 5 436 6.71e-157 457
Msa0627580 AT3G06770.4 61.791 335 128 0 219 553 13 347 1.49e-146 427
Msa0627580 AT3G48950.1 48.379 401 197 3 163 553 38 438 1.00e-136 406
Msa0627580 AT4G23820.1 47.100 431 210 4 136 553 6 431 3.64e-134 399
Msa0627580 AT4G23500.1 49.118 397 193 2 166 553 64 460 8.84e-134 399
Msa0627580 AT3G61490.2 47.103 397 201 2 166 553 41 437 1.47e-129 388
Msa0627580 AT3G61490.3 47.103 397 201 2 166 553 41 437 1.47e-129 388
Msa0627580 AT3G61490.1 47.103 397 201 2 166 553 41 437 1.47e-129 388
Msa0627580 AT3G61490.5 47.103 397 201 2 166 553 56 452 2.17e-129 388
Msa0627580 AT3G61490.4 47.103 397 201 2 166 553 154 550 1.44e-128 389
Msa0627580 AT2G23900.1 45.411 414 214 4 163 566 49 460 2.44e-123 372
Msa0627580 AT4G33440.1 44.889 450 230 4 133 565 26 474 4.95e-122 369
Msa0627580 AT5G41870.1 44.667 450 226 8 128 564 6 445 6.59e-122 367
Msa0627580 AT3G42950.1 40.199 403 229 4 161 553 59 459 1.97e-109 336
Msa0627580 AT1G19170.1 41.446 415 230 5 150 553 69 481 3.38e-107 331
Msa0627580 AT3G15720.1 27.941 408 250 16 168 561 22 399 4.23e-24 105
Msa0627580 AT3G15720.3 27.941 408 250 16 168 561 21 398 5.03e-24 105
Msa0627580 AT3G15720.2 27.941 408 247 17 168 561 21 395 3.11e-22 100
Msa0627580 AT2G41850.1 29.904 311 179 11 167 464 65 349 1.57e-20 94.7
Msa0627580 AT3G57510.1 26.064 376 235 11 169 529 67 414 2.31e-20 94.4
Msa0627580 AT3G15720.4 28.247 308 190 11 265 561 48 335 3.60e-20 93.2
Msa0627580 AT1G70500.1 24.874 398 243 13 170 546 67 429 1.11e-17 86.7
Msa0627580 AT1G23460.1 25.313 399 240 15 170 546 67 429 1.50e-17 85.9
Msa0627580 AT1G23460.2 25.313 399 240 15 170 546 43 405 1.84e-17 85.5
Msa0627580 AT1G48100.1 28.296 311 180 12 172 464 82 367 1.49e-16 83.2
Msa0627580 AT3G57790.2 28.025 314 183 12 169 461 34 325 4.02e-16 81.6
Msa0627580 AT3G57790.1 28.025 314 183 12 169 461 34 325 4.02e-16 81.6
Msa0627580 AT5G17200.1 26.014 296 180 8 170 457 39 303 6.53e-16 80.5
Msa0627580 AT3G07970.1 26.545 275 176 6 275 538 167 426 7.15e-16 80.5
Msa0627580 AT3G26610.1 24.918 305 196 9 171 464 68 350 7.70e-16 80.9
Msa0627580 AT5G14650.1 23.871 310 191 9 169 464 50 328 1.18e-15 80.1
Msa0627580 AT1G02790.1 26.393 341 213 10 167 500 49 358 5.17e-14 74.7
Msa0627580 AT2G15460.1 26.020 392 250 13 166 542 27 393 7.75e-14 73.9
Msa0627580 AT2G15450.1 25.686 401 257 14 166 550 27 402 2.60e-13 72.4
Msa0627580 AT2G43870.1 25.205 365 240 10 168 524 19 358 3.67e-13 72.0
Msa0627580 AT1G56710.1 25.879 313 197 10 167 464 45 337 4.22e-13 72.0
Msa0627580 AT2G43860.1 25.693 397 257 16 165 550 28 397 1.14e-12 70.5
Msa0627580 AT1G43080.1 23.645 406 263 15 166 552 27 404 2.08e-12 69.7
Msa0627580 AT2G40310.1 24.752 404 257 15 166 550 27 402 4.39e-12 68.6
Msa0627580 AT3G59850.2 23.678 397 255 11 168 549 65 428 7.08e-12 68.2
Msa0627580 AT1G02460.1 25.949 316 188 11 171 464 90 381 1.08e-11 67.8
Msa0627580 AT3G59850.1 24.060 399 251 13 168 549 21 384 1.12e-11 67.4
Msa0627580 AT2G43880.1 24.495 396 253 16 169 550 30 393 1.14e-11 67.4
Msa0627580 AT1G43100.1 23.410 393 255 14 166 540 27 391 1.23e-11 67.4
Msa0627580 AT4G13760.1 24.505 404 258 15 166 550 27 402 1.24e-11 67.4
Msa0627580 AT1G17150.1 24.318 403 253 13 166 549 29 398 1.74e-11 66.6
Msa0627580 AT1G43090.1 23.410 393 255 14 166 540 27 391 2.22e-11 66.6
Msa0627580 AT5G14650.2 25.909 220 135 6 169 378 50 251 2.89e-11 65.5

Find 144 sgRNAs with CRISPR-Local

Find 688 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCGTTTCTTCAAGTAAA+TGG 0.088505 4_3:-7896352 Msa0627580:CDS
GTACAAATAATGACCTATTT+TGG 0.177613 4_3:+7895951 None:intergenic
AGCAATGCCGTGAATGTTTA+TGG 0.195198 4_3:-7898689 Msa0627580:CDS
ATTCATGTGTAATGAAATTT+TGG 0.199629 4_3:-7895914 Msa0627580:three_prime_UTR
AAGATTTACCTGCTGGAATT+TGG 0.221109 4_3:+7904785 None:intergenic
TGTGTGACTGCCACGTATTC+TGG 0.225625 4_3:+7905367 None:intergenic
CTAGCCATCTCACCCTCTTT+TGG 0.237372 4_3:-7898457 Msa0627580:CDS
ATTCTTGCATATTCCAAAAT+AGG 0.253449 4_3:-7895964 Msa0627580:three_prime_UTR
ATGTCGTTTGAATCCTAAAT+TGG 0.263811 4_3:-7898654 Msa0627580:CDS
ATTGAAGCTTTACCTTCTTA+TGG 0.264280 4_3:-7897851 Msa0627580:CDS
GGTACTATACCGGCAGTATA+AGG 0.271970 4_3:+7897341 None:intergenic
ATTTCAGCTAAAGGTAATTC+TGG 0.272185 4_3:-7896539 Msa0627580:CDS
TTATGAGCAAGAATCAAATT+TGG 0.285483 4_3:+7896122 None:intergenic
TGCAAAAGTGGAAGTGCTTT+TGG 0.294030 4_3:+7896491 None:intergenic
ATTATTTACCTGCAATAAAC+AGG 0.300438 4_3:+7897491 None:intergenic
TCATTTGCCAATTGAGAATA+GGG 0.301752 4_3:-7896056 Msa0627580:three_prime_UTR
AGTGTCTCTATATTGGAATT+TGG 0.306110 4_3:-7898617 Msa0627580:CDS
CGTATTCTGGACTGACGATT+TGG 0.322300 4_3:+7905380 None:intergenic
CCACCAGGAAACTGGCTTAC+TGG 0.322724 4_3:-7898494 Msa0627580:CDS
TTTGACATAGGGTTGAAATA+AGG 0.327825 4_3:+7905961 None:intergenic
TATGTAACCACCTCTTCCTT+TGG 0.328460 4_3:+7896610 None:intergenic
TGAGATAGAAAATTGCATTC+TGG 0.331713 4_3:+7898555 None:intergenic
TGTGGCCTAGGATCCAATTT+AGG 0.332220 4_3:+7898641 None:intergenic
ATTTGTGATCACGAAGGATT+TGG 0.335248 4_3:-7904994 Msa0627580:CDS
GATCAGTACGGCATTAAATA+TGG 0.336655 4_3:-7896791 Msa0627580:CDS
GCCACACAGTGTCTCTATAT+TGG 0.338491 4_3:-7898624 Msa0627580:CDS
TTGGAAGATGTGGTCATAAC+AGG 0.339246 4_3:-7897773 Msa0627580:intron
CCGGCAGTATAAGGGGATTC+TGG 0.339380 4_3:+7897350 None:intergenic
GTTCATCTTCGTGCATTTAC+CGG 0.342309 4_3:-7896737 Msa0627580:CDS
TCTCAAGTCATTTGCTGATA+AGG 0.351226 4_3:-7898537 Msa0627580:CDS
ACCGGCTCTGCTATTTCATT+TGG 0.351598 4_3:-7896719 Msa0627580:CDS
GGAAAGAATATCACAATTGC+TGG 0.353969 4_3:-7896443 Msa0627580:CDS
AAATGTTAACATGCTCTATC+AGG 0.358232 4_3:+7896666 None:intergenic
GGCAATAATGGAACCATTGA+TGG 0.360386 4_3:-7897653 Msa0627580:CDS
TTGACATAGGGTTGAAATAA+GGG 0.366460 4_3:+7905962 None:intergenic
GTACTATACCGGCAGTATAA+GGG 0.366594 4_3:+7897342 None:intergenic
TATGCAAGAATTGAAATCTA+AGG 0.368433 4_3:+7895976 None:intergenic
TTTGGATCAAATTTGTCATC+AGG 0.370603 4_3:+7896509 None:intergenic
ATGGAATGGTTTGGTGGGAC+TGG 0.373444 4_3:-7897628 Msa0627580:CDS
GATGAGGACGACTGTGGTTA+AGG 0.378902 4_3:+7897591 None:intergenic
TCTATGTGCCACCAGGAAAC+TGG 0.379700 4_3:-7898502 Msa0627580:CDS
TGCTTTATCACACATAGAAA+TGG 0.384138 4_3:-7896579 Msa0627580:CDS
TTCCGTTTCTTCAAGTAAAT+GGG 0.384317 4_3:-7896351 Msa0627580:CDS
GTCATTTGCCAATTGAGAAT+AGG 0.393303 4_3:-7896057 Msa0627580:three_prime_UTR
TATACAGCAATTTCAGCTAA+AGG 0.395099 4_3:-7896548 Msa0627580:CDS
CTTATATGTACTTTCTCACT+TGG 0.401622 4_3:+7896764 None:intergenic
CCAAGTTCTTGACAAGGTTT+AGG 0.403560 4_3:+7896290 None:intergenic
ATAACATTGAAGGATATAAC+TGG 0.408428 4_3:-7896464 Msa0627580:CDS
GCATCCACCCTGTTTATTGC+AGG 0.409422 4_3:-7897499 Msa0627580:intron
AAATAGTGATTTAAGATTGT+AGG 0.410370 4_3:+7895720 None:intergenic
AACCATTCCATTGCCATCAA+TGG 0.414602 4_3:+7897640 None:intergenic
AGATACAAGAGCTTGATAAA+TGG 0.415928 4_3:-7897803 Msa0627580:CDS
CTCAAGTCATTTGCTGATAA+GGG 0.419974 4_3:-7898536 Msa0627580:CDS
CCTAAACCTTGTCAAGAACT+TGG 0.423904 4_3:-7896290 Msa0627580:CDS
TGAATCCTAAATTGGATCCT+AGG 0.429800 4_3:-7898646 Msa0627580:CDS
TTTGGTAGTGCCTTTACAAA+AGG 0.429852 4_3:-7895896 Msa0627580:three_prime_UTR
TTCCCATTTACTTGAAGAAA+CGG 0.430980 4_3:+7896349 None:intergenic
GAATGTACCCTATTCTCAAT+TGG 0.432022 4_3:+7896049 None:intergenic
TGTAAAGCATGTAGTGGATT+TGG 0.434938 4_3:-7895817 Msa0627580:three_prime_UTR
ATATTGGAATTTGGTGCAGT+TGG 0.436498 4_3:-7898608 Msa0627580:CDS
TTTGCATCACATAACATTGA+AGG 0.443614 4_3:-7896474 Msa0627580:CDS
CTACCAGTAAGCCAGTTTCC+TGG 0.448344 4_3:+7898491 None:intergenic
TGGTGAGGGAAGAGAAGAAG+AGG 0.450375 4_3:-7904974 Msa0627580:CDS
ATAGAGACACTGTGTGGCCT+AGG 0.453912 4_3:+7898629 None:intergenic
GACGCAATTTCTCTCAAAAG+TGG 0.454842 4_3:-7896818 Msa0627580:CDS
TTGTTTAGGATCCATCTCAT+TGG 0.466913 4_3:-7897880 Msa0627580:intron
TTATGACCACATCTTCCAAC+TGG 0.467822 4_3:+7897777 None:intergenic
ATGAGGACGACTGTGGTTAA+GGG 0.472010 4_3:+7897592 None:intergenic
TAATACTCTCCTCTTGCCTC+TGG 0.473028 4_3:+7904842 None:intergenic
GAAGATTGTTATGTTTCCAT+TGG 0.475742 4_3:-7896845 Msa0627580:CDS
GTGAGAAAGTACATATAAGA+AGG 0.477334 4_3:-7896760 Msa0627580:CDS
ATGGGAATGTTCAAATGTCT+CGG 0.480367 4_3:-7896333 Msa0627580:CDS
TCATTTGGTACTGAAATGTC+TGG 0.487250 4_3:-7896704 Msa0627580:CDS
AGAATCAAATTTGGTATCCA+AGG 0.488955 4_3:+7896131 None:intergenic
GTGCGAGTGTTGTAAATCCT+TGG 0.493743 4_3:-7896148 Msa0627580:three_prime_UTR
AAGCTCTTGTATCTTCCGTC+AGG 0.495493 4_3:+7897812 None:intergenic
TAGACAAGGTTATATTTGAA+AGG 0.499579 4_3:+7896378 None:intergenic
AACATCTCCATAAACATTCA+CGG 0.500990 4_3:+7898682 None:intergenic
CAATTTCTCTCAAAAGTGGA+TGG 0.507018 4_3:-7896814 Msa0627580:CDS
ATAAACTGTTCTCAAAACAC+TGG 0.508700 4_3:-7896195 Msa0627580:three_prime_UTR
GATGACGAAGAAGAATTTGA+AGG 0.513232 4_3:+7896263 None:intergenic
TGGGAATGTTCAAATGTCTC+GGG 0.517276 4_3:-7896332 Msa0627580:CDS
ACCAAATGAAATAGCAGAGC+CGG 0.517644 4_3:+7896718 None:intergenic
AATGGAACCATTGATGGCAA+TGG 0.521099 4_3:-7897647 Msa0627580:CDS
TCTTTCCCTCGGCCATAAGA+AGG 0.523156 4_3:+7897839 None:intergenic
AATGTTATGTGATGCAAAAG+TGG 0.524613 4_3:+7896479 None:intergenic
TCAATAACATTCCAATGAGA+TGG 0.528619 4_3:+7897869 None:intergenic
AAACACTGGATTGGCGTAAG+TGG 0.534015 4_3:-7896181 Msa0627580:three_prime_UTR
CCAGAATCCCCTTATACTGC+CGG 0.534389 4_3:-7897350 Msa0627580:CDS
ATTGAAATCTAAGGAATGAA+AGG 0.541989 4_3:+7895985 None:intergenic
GCTTTACCTTCTTATGGCCG+AGG 0.543091 4_3:-7897845 Msa0627580:CDS
ACAATTGCTGGAAGCTTGAG+TGG 0.543463 4_3:-7896431 Msa0627580:CDS
TGGACTGACGATTTGGACAA+AGG 0.543705 4_3:+7905387 None:intergenic
TTTCACTGTAAAGCATGTAG+TGG 0.545854 4_3:-7895823 Msa0627580:three_prime_UTR
CTTGATAAATGGTAACCAGT+TGG 0.546984 4_3:-7897792 Msa0627580:CDS
TGGTAACCAGTTGGAAGATG+TGG 0.548355 4_3:-7897783 Msa0627580:CDS
CGTCAGGAACATCTTTCCCT+CGG 0.553651 4_3:+7897828 None:intergenic
GCAGTCACACACAGGTCCGC+AGG 0.555326 4_3:-7905355 Msa0627580:intron
ACAGGGTGGATGCTATATGC+TGG 0.557217 4_3:+7897509 None:intergenic
AGAAATTGCGTCAAAACCAA+TGG 0.560982 4_3:+7896829 None:intergenic
TTCAGAACAACCAAAGGAAG+AGG 0.562716 4_3:-7896620 Msa0627580:CDS
TGTTACTACCTCATGAGTCT+TGG 0.563692 4_3:-7896239 Msa0627580:CDS
TTACTAACCTGGTACTATAC+CGG 0.564112 4_3:+7897331 None:intergenic
ATGGCAATGGAATGGTTTGG+TGG 0.564149 4_3:-7897634 Msa0627580:CDS
GAATTTGGTGCAGTTGGAGA+TGG 0.565909 4_3:-7898602 Msa0627580:CDS
CTGTTCTCAAAACACTGGAT+TGG 0.573682 4_3:-7896190 Msa0627580:three_prime_UTR
TGGCAATGGAATGGTTTGGT+GGG 0.576997 4_3:-7897633 Msa0627580:CDS
TTGATGGCAATGGAATGGTT+TGG 0.583352 4_3:-7897637 Msa0627580:CDS
ATGACGAAGAAGAATTTGAA+GGG 0.583947 4_3:+7896264 None:intergenic
TACTATACCGGCAGTATAAG+GGG 0.586797 4_3:+7897343 None:intergenic
TGAGAAAGTACATATAAGAA+GGG 0.590695 4_3:-7896759 Msa0627580:CDS
AGAAACGGAATTTGTAGACA+AGG 0.591928 4_3:+7896364 None:intergenic
CTTTACCTTCTTATGGCCGA+GGG 0.592122 4_3:-7897844 Msa0627580:CDS
TGAAAGGCATATGTTTGTGA+AGG 0.592606 4_3:+7896394 None:intergenic
GATATAATTTCAACGAGATG+AGG 0.595103 4_3:+7897575 None:intergenic
GCTCAGCTCTATGTGCCACC+AGG 0.597340 4_3:-7898509 Msa0627580:CDS
TCGAATCTCCAAATTCCAGC+AGG 0.599967 4_3:-7904793 Msa0627580:intron
TATACTGCCGGTATAGTACC+AGG 0.604603 4_3:-7897338 Msa0627580:intron
AATCTATGCTTGAATTGCGA+AGG 0.608124 4_3:+7905029 None:intergenic
AATTTCTCTCAAAAGTGGAT+GGG 0.608979 4_3:-7896813 Msa0627580:CDS
TGATCACGAAGGATTTGGTG+AGG 0.612229 4_3:-7904989 Msa0627580:CDS
AACCATTGATGGCAATGGAA+TGG 0.612706 4_3:-7897642 Msa0627580:CDS
AAAAGTGGATGGGATCAGTA+CGG 0.626304 4_3:-7896803 Msa0627580:CDS
TTTGGTACTGAAATGTCTGG+TGG 0.627310 4_3:-7896701 Msa0627580:CDS
GAAAGGCATATGTTTGTGAA+GGG 0.628625 4_3:+7896395 None:intergenic
AGAAGTTCACCAGAGGCAAG+AGG 0.630342 4_3:-7904851 Msa0627580:CDS
GATCACGAAGGATTTGGTGA+GGG 0.636347 4_3:-7904988 Msa0627580:CDS
GGGTTACCAAGTTCTTGACA+AGG 0.644208 4_3:+7896284 None:intergenic
CGAGGGAAAGATGTTCCTGA+CGG 0.645144 4_3:-7897827 Msa0627580:CDS
ATTGAGTTCAGAACAACCAA+AGG 0.651524 4_3:-7896626 Msa0627580:CDS
ATTCAAGCATAGATTCGTCA+AGG 0.657085 4_3:-7905021 Msa0627580:CDS
AGAACAACCAAAGGAAGAGG+TGG 0.657978 4_3:-7896617 Msa0627580:CDS
ACTGGATTGGCGTAAGTGGT+TGG 0.658298 4_3:-7896177 Msa0627580:three_prime_UTR
AAGTCATTTGCTGATAAGGG+TGG 0.660065 4_3:-7898533 Msa0627580:CDS
CAACGAGATGAGGACGACTG+TGG 0.660908 4_3:+7897585 None:intergenic
TTATTTACCTGCAATAAACA+GGG 0.669198 4_3:+7897492 None:intergenic
AATCGTCAGTCCAGAATACG+TGG 0.671255 4_3:-7905377 Msa0627580:CDS
TTTACCTGCAATAAACAGGG+TGG 0.674542 4_3:+7897495 None:intergenic
AATACGTGGCAGTCACACAC+AGG 0.674650 4_3:-7905363 Msa0627580:CDS
GCAGTATAAGGGGATTCTGG+AGG 0.680237 4_3:+7897353 None:intergenic
CGAATCAAGAAGTTCACCAG+AGG 0.685482 4_3:-7904858 Msa0627580:CDS
GGACGAATTTGTGATCACGA+AGG 0.714195 4_3:-7905000 Msa0627580:CDS
TCCAATATAGAGACACTGTG+TGG 0.732684 4_3:+7898623 None:intergenic
CCAGTAAGCCAGTTTCCTGG+TGG 0.733343 4_3:+7898494 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAATAAAATTTATATT+TGG + chr4_3:7899346-7899365 None:intergenic 0.0%
!!! TGATATTATTCATATTTTTT+TGG + chr4_3:7898637-7898656 None:intergenic 10.0%
!!! ATTTTGTTTAAGAAAATAAA+AGG + chr4_3:7898710-7898729 None:intergenic 10.0%
!!! TTATGTTTTATTTTAATTGA+AGG + chr4_3:7898950-7898969 None:intergenic 10.0%
!! ATATTTGCATATTAAAAAAA+TGG - chr4_3:7899730-7899749 Msa0627580:intron 10.0%
!! AACTAAAATTGAATTAAAAA+TGG - chr4_3:7900218-7900237 Msa0627580:intron 10.0%
!! ACTAAAATTGAATTAAAAAT+GGG - chr4_3:7900219-7900238 Msa0627580:intron 10.0%
!! AAGAGAATATAATATTTATA+TGG + chr4_3:7900881-7900900 None:intergenic 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898098-7898117 Msa0627580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898098-7898117 Msa0627580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898098-7898117 Msa0627580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898098-7898117 Msa0627580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898098-7898117 Msa0627580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898098-7898117 Msa0627580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898098-7898117 Msa0627580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898098-7898117 Msa0627580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898098-7898117 Msa0627580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898098-7898117 Msa0627580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898098-7898117 Msa0627580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898098-7898117 Msa0627580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898098-7898117 Msa0627580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898098-7898117 Msa0627580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898098-7898117 Msa0627580:intron 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898098-7898117 None:intergenic 100.0%
!! AATGCAATTAAAAGTAAAAT+TGG + chr4_3:7896123-7896142 None:intergenic 15.0%
!!! AATTTGGTTTTAAACTTTTA+CGG + chr4_3:7897077-7897096 None:intergenic 15.0%
!!! TCTTGGTTTTTTTTTTTTTT+TGG - chr4_3:7897731-7897750 Msa0627580:intron 15.0%
!!! CTTGGTTTTTTTTTTTTTTT+GGG - chr4_3:7897732-7897751 Msa0627580:intron 15.0%
!!! TATATTTTGGTATGATTTTT+TGG - chr4_3:7897844-7897863 Msa0627580:CDS 15.0%
!!! TAATATATTTTACGCATATT+TGG + chr4_3:7897999-7898018 None:intergenic 15.0%
!! AATATGCGTAAAATATATTA+TGG - chr4_3:7897999-7898018 Msa0627580:intron 15.0%
!!! TTTTTATCACAATCAAAAAT+AGG + chr4_3:7898056-7898075 None:intergenic 15.0%
!! GAAATTAAAAATTGCATAAA+AGG + chr4_3:7898450-7898469 None:intergenic 15.0%
!!! ATATTTTTAGATGTATGTTT+AGG - chr4_3:7898560-7898579 Msa0627580:CDS 15.0%
!!! TTTTGGAAAATGATTTTTTT+AGG + chr4_3:7898620-7898639 None:intergenic 15.0%
!!! TTGATTTTAAGTTTGAAAAT+TGG + chr4_3:7898843-7898862 None:intergenic 15.0%
!!! AAAATGTTTTTGTTTTTTGT+TGG + chr4_3:7898866-7898885 None:intergenic 15.0%
!!! ACAAAAAACAAAAACATTTT+TGG - chr4_3:7898866-7898885 Msa0627580:intron 15.0%
!! TTAATAGGTATTCTAATAAT+AGG + chr4_3:7899891-7899910 None:intergenic 15.0%
!! TATTATTAGAATACCTATTA+AGG - chr4_3:7899890-7899909 Msa0627580:intron 15.0%
!! ATAACTATTCCTAATTAATA+AGG - chr4_3:7899986-7900005 Msa0627580:intron 15.0%
!! TATCATTAACCTTATTAATT+AGG + chr4_3:7899998-7900017 None:intergenic 15.0%
!!! CTATTATAGTATCATTTTTT+TGG - chr4_3:7900518-7900537 Msa0627580:intron 15.0%
!!! TCAATAGTTTTCTATTATTA+TGG - chr4_3:7900607-7900626 Msa0627580:intron 15.0%
!!! TATTTTCAAATTACATTTCA+TGG + chr4_3:7900642-7900661 None:intergenic 15.0%
!! ATAAATTAATTAGCACTAAT+TGG + chr4_3:7901548-7901567 None:intergenic 15.0%
!! TATTATCAGACTATAATAAT+TGG - chr4_3:7901649-7901668 Msa0627580:intron 15.0%
!!! TTTTTCATTTAATTTTTACC+AGG - chr4_3:7904030-7904049 Msa0627580:intron 15.0%
!! ATGATATAATTGAATATACT+CGG + chr4_3:7904664-7904683 None:intergenic 15.0%
!!! TCATTTTTCAAATAATTACT+AGG - chr4_3:7904680-7904699 Msa0627580:intron 15.0%
!!! CATTTTTCAAATAATTACTA+GGG - chr4_3:7904681-7904700 Msa0627580:intron 15.0%
!!! TTTAAAATGGTTTTTTGACA+TGG + chr4_3:7895919-7895938 None:intergenic 20.0%
!!! ACTCAAATGCAATTTTAAAA+TGG + chr4_3:7895932-7895951 None:intergenic 20.0%
!!! TCCTTTTGTTGATTTTATTT+GGG - chr4_3:7896060-7896079 Msa0627580:three_prime_UTR 20.0%
!! CTGAAAGAAAAAAAACAAAA+AGG + chr4_3:7896181-7896200 None:intergenic 20.0%
!!! CTTTTTGTTTTTTTTCTTTC+AGG - chr4_3:7896179-7896198 Msa0627580:three_prime_UTR 20.0%
!! TAAATTGAGAAAAGATTTAG+TGG + chr4_3:7896205-7896224 None:intergenic 20.0%
!!! TCTTTTCTCAATTTACATTT+TGG - chr4_3:7896210-7896229 Msa0627580:exon 20.0%
!!! TGCAAACTTTTTATGATTAA+AGG + chr4_3:7896237-7896256 None:intergenic 20.0%
!! ATAGCAAAAACATAAGAAAA+CGG + chr4_3:7897631-7897650 None:intergenic 20.0%
!!! TTCAAATGTTTGCTATATTT+TGG - chr4_3:7897831-7897850 Msa0627580:CDS 20.0%
!!! TTGTTATTGTGATCAATTTT+AGG - chr4_3:7898154-7898173 Msa0627580:intron 20.0%
!! GCATGAAAATTATAAGAAAA+AGG + chr4_3:7898240-7898259 None:intergenic 20.0%
!! ATTTAGCATGTAAAAAACTT+AGG - chr4_3:7898411-7898430 Msa0627580:intron 20.0%
!! TTTAGCATGTAAAAAACTTA+GGG - chr4_3:7898412-7898431 Msa0627580:intron 20.0%
!!! ATCATTTTCTAAATAAACCT+TGG - chr4_3:7898662-7898681 Msa0627580:CDS 20.0%
!!! TCATTTTCTAAATAAACCTT+GGG - chr4_3:7898663-7898682 Msa0627580:CDS 20.0%
!! AAATAAAAGGAAAATGCAAT+GGG + chr4_3:7898697-7898716 None:intergenic 20.0%
!! AAAATAAAAGGAAAATGCAA+TGG + chr4_3:7898698-7898717 None:intergenic 20.0%
!!! AATGAATTTTAATCATACCT+TGG - chr4_3:7898733-7898752 Msa0627580:intron 20.0%
!!! TTGATATCTCATTTTTTCTT+GGG + chr4_3:7899191-7899210 None:intergenic 20.0%
!!! TTTGATATCTCATTTTTTCT+TGG + chr4_3:7899192-7899211 None:intergenic 20.0%
!! AAGAAAAAATGAGATATCAA+AGG - chr4_3:7899191-7899210 Msa0627580:intron 20.0%
!! AATGAAAACAAATAAGTTAG+AGG + chr4_3:7900425-7900444 None:intergenic 20.0%
!! TATTTATAACCAACAATGAT+AGG - chr4_3:7900677-7900696 Msa0627580:intron 20.0%
!! ATTTGACATTATATAGATAG+TGG - chr4_3:7900716-7900735 Msa0627580:intron 20.0%
!!! TACTAATCATTTTCATTAAC+AGG - chr4_3:7901514-7901533 Msa0627580:intron 20.0%
!! TAAATAGAATACTCTACTTA+AGG + chr4_3:7901604-7901623 None:intergenic 20.0%
!! TTCATATACGTACAAATATT+TGG + chr4_3:7901955-7901974 None:intergenic 20.0%
!! AATATTTGTACGTATATGAA+AGG - chr4_3:7901955-7901974 Msa0627580:intron 20.0%
!!! TTGCTTTGTTTTTCATTTTA+AGG - chr4_3:7902326-7902345 Msa0627580:intron 20.0%
!!! TGCTTTGTTTTTCATTTTAA+GGG - chr4_3:7902327-7902346 Msa0627580:intron 20.0%
!!! TTTTTGTGTTTTGTTCATAT+GGG - chr4_3:7902398-7902417 Msa0627580:intron 20.0%
!! TCATACATAAAATTTGAACA+TGG + chr4_3:7902424-7902443 None:intergenic 20.0%
!! ATCAATATATCAGATCAAAA+TGG + chr4_3:7902526-7902545 None:intergenic 20.0%
!! CACTTCAACAAAATATTATA+AGG + chr4_3:7902622-7902641 None:intergenic 20.0%
!! ATCTTTGAATGTATTGAAAT+TGG - chr4_3:7903388-7903407 Msa0627580:intron 20.0%
!!! AATTATATCATCTGATTTTG+TGG - chr4_3:7904143-7904162 Msa0627580:intron 20.0%
!!! TAATTTTGCAGACAAAATTA+AGG - chr4_3:7904261-7904280 Msa0627580:intron 20.0%
!!! AATTTTGCAGACAAAATTAA+GGG - chr4_3:7904262-7904281 Msa0627580:intron 20.0%
!! TTACCATCTCAAATAATTAT+CGG + chr4_3:7904566-7904585 None:intergenic 20.0%
!!! ATGAACAACTTGTTTTATTT+TGG + chr4_3:7905684-7905703 None:intergenic 20.0%
!!! ATTCATGTGTAATGAAATTT+TGG - chr4_3:7905790-7905809 Msa0627580:intron 20.0%
!! TCTAAATGTAACTTTTGCAA+TGG + chr4_3:7895771-7895790 None:intergenic 25.0%
!!! ATTAAACAGTGTTTTAACAC+AGG + chr4_3:7895839-7895858 None:intergenic 25.0%
!!! GTCCTTTTGTTGATTTTATT+TGG - chr4_3:7896059-7896078 Msa0627580:three_prime_UTR 25.0%
! ACCCAAATAAAATCAACAAA+AGG + chr4_3:7896064-7896083 None:intergenic 25.0%
!! GGCAAATAATAGGATTTTTA+GGG + chr4_3:7896151-7896170 None:intergenic 25.0%
!! AGGCAAATAATAGGATTTTT+AGG + chr4_3:7896152-7896171 None:intergenic 25.0%
! AAAAAACAAAAAGGACGTAA+AGG + chr4_3:7896172-7896191 None:intergenic 25.0%
!!! TCTGCAATTTGTTAGAAATA+AGG + chr4_3:7896292-7896311 None:intergenic 25.0%
!! TATTTCTAACAAATTGCAGA+AGG - chr4_3:7896292-7896311 Msa0627580:CDS 25.0%
!!! GAGTTTTTTTGTGATGAAAT+TGG + chr4_3:7896579-7896598 None:intergenic 25.0%
!!! ATTCAAGCATGAAAAGTATT+CGG + chr4_3:7896987-7897006 None:intergenic 25.0%
!!! TTGAAACTTTTTGAGGAAAA+CGG + chr4_3:7897034-7897053 None:intergenic 25.0%
!!! TACACTGATTTGAACAAATT+TGG + chr4_3:7897093-7897112 None:intergenic 25.0%
! TCACTCCAATATAAAAGTAA+GGG + chr4_3:7897454-7897473 None:intergenic 25.0%
! TTCACTCCAATATAAAAGTA+AGG + chr4_3:7897455-7897474 None:intergenic 25.0%
!!! GGAATTTTTTAGCAAAGTTT+TGG + chr4_3:7897692-7897711 None:intergenic 25.0%
! GAAACACATTAAAAACACAT+AGG + chr4_3:7897713-7897732 None:intergenic 25.0%
!!! TGTGTTTTTAATGTGTTTCT+TGG - chr4_3:7897714-7897733 Msa0627580:intron 25.0%
! CAAAAATAGGAGAAATCATA+AGG + chr4_3:7898043-7898062 None:intergenic 25.0%
! ATGAAATGGTTAGTAGAATA+AGG + chr4_3:7898270-7898289 None:intergenic 25.0%
! GAGTGAAATATGAAATGAAA+TGG + chr4_3:7898284-7898303 None:intergenic 25.0%
! TGAGATATCAAAGGTTAAAA+AGG - chr4_3:7899200-7899219 Msa0627580:intron 25.0%
!!! ATCTGTTTTATCTTGGTTTT+CGG + chr4_3:7899251-7899270 None:intergenic 25.0%
!! TTGGATATAATGCTTCTTTT+TGG - chr4_3:7899523-7899542 Msa0627580:intron 25.0%
! AATGATACACTATATCCAAA+AGG + chr4_3:7899577-7899596 None:intergenic 25.0%
! AATATTGACGATTAAGATAG+TGG + chr4_3:7899659-7899678 None:intergenic 25.0%
! CAAAAAATCAAGATACGATA+CGG + chr4_3:7899808-7899827 None:intergenic 25.0%
! AATGGTATAAAACTCACTTT+CGG + chr4_3:7899930-7899949 None:intergenic 25.0%
! ATACTCTATCCTTCATTTAA+TGG - chr4_3:7900982-7901001 Msa0627580:intron 25.0%
! TTATGTTCTCCATTAAATGA+AGG + chr4_3:7900994-7901013 None:intergenic 25.0%
!! ATTTGTAAGATTCTGATTTG+TGG + chr4_3:7901263-7901282 None:intergenic 25.0%
! CACTAATGCATTATTAATGT+TGG + chr4_3:7901710-7901729 None:intergenic 25.0%
!!! TTGCTGTCATTTTTTTACAT+TGG - chr4_3:7901999-7902018 Msa0627580:intron 25.0%
!!! TTTGTTACTTGTTTTTGTGT+TGG - chr4_3:7902136-7902155 Msa0627580:intron 25.0%
!!! GTTTTTGTGTTTTGTTCATA+TGG - chr4_3:7902397-7902416 Msa0627580:intron 25.0%
!! TATGTATGAGATTTGTTCTT+TGG - chr4_3:7902435-7902454 Msa0627580:intron 25.0%
!! ATGTATGAGATTTGTTCTTT+GGG - chr4_3:7902436-7902455 Msa0627580:intron 25.0%
!!! GTTTTTTTGTTCCTTTTGTT+TGG - chr4_3:7902458-7902477 Msa0627580:intron 25.0%
!!! TTTCTATGTCGTTTTAAATC+TGG - chr4_3:7902919-7902938 Msa0627580:intron 25.0%
!!! TTCTATGTCGTTTTAAATCT+GGG - chr4_3:7902920-7902939 Msa0627580:intron 25.0%
! ACTAACAAAATTCTTACTCA+GGG + chr4_3:7903422-7903441 None:intergenic 25.0%
!! CCATGAGTAAAAAATCATTT+TGG + chr4_3:7903577-7903596 None:intergenic 25.0%
!!! CCAAAATGATTTTTTACTCA+TGG - chr4_3:7903574-7903593 Msa0627580:intron 25.0%
! AATTGTGTATTGTTCCTATT+TGG - chr4_3:7903634-7903653 Msa0627580:intron 25.0%
! GCTATATTATTATAGCGTAT+CGG - chr4_3:7903690-7903709 Msa0627580:intron 25.0%
!! TAATTTTTACCAGGCAATAA+TGG - chr4_3:7904039-7904058 Msa0627580:intron 25.0%
! TTATTTACCTGCAATAAACA+GGG + chr4_3:7904215-7904234 None:intergenic 25.0%
! ATTATTTACCTGCAATAAAC+AGG + chr4_3:7904216-7904235 None:intergenic 25.0%
! CTTTAATATGTTTACTAACC+TGG + chr4_3:7904387-7904406 None:intergenic 25.0%
! ATACCGATAATTATTTGAGA+TGG - chr4_3:7904560-7904579 Msa0627580:intron 25.0%
!! TGAGAAAGTACATATAAGAA+GGG - chr4_3:7904945-7904964 Msa0627580:CDS 25.0%
!! AACATTTTCAACTCAAATAG+TGG - chr4_3:7905054-7905073 Msa0627580:CDS 25.0%
! ATAACATTGAAGGATATAAC+TGG - chr4_3:7905240-7905259 Msa0627580:intron 25.0%
! TAGACAAGGTTATATTTGAA+AGG + chr4_3:7905329-7905348 None:intergenic 25.0%
! TTATGAGCAAGAATCAAATT+TGG + chr4_3:7905585-7905604 None:intergenic 25.0%
! ATTGAAATCTAAGGAATGAA+AGG + chr4_3:7905722-7905741 None:intergenic 25.0%
! TATGCAAGAATTGAAATCTA+AGG + chr4_3:7905731-7905750 None:intergenic 25.0%
! ATTCTTGCATATTCCAAAAT+AGG - chr4_3:7905740-7905759 Msa0627580:intron 25.0%
!! GTACAAATAATGACCTATTT+TGG + chr4_3:7905756-7905775 None:intergenic 25.0%
TTGACATAGGGTTGAAATAA+GGG + chr4_3:7895745-7895764 None:intergenic 30.0%
TTTGACATAGGGTTGAAATA+AGG + chr4_3:7895746-7895765 None:intergenic 30.0%
!! TTGCAATGGATTTTGACATA+GGG + chr4_3:7895757-7895776 None:intergenic 30.0%
!! TTTGCAATGGATTTTGACAT+AGG + chr4_3:7895758-7895777 None:intergenic 30.0%
! AGACTCAGAGACAATTTTTA+AGG + chr4_3:7895862-7895881 None:intergenic 30.0%
TGCAAATTTGAAAAAAGGAC+TGG + chr4_3:7896262-7896281 None:intergenic 30.0%
!!! AGTCCTTTTTTCAAATTTGC+AGG - chr4_3:7896261-7896280 Msa0627580:CDS 30.0%
!!! CTTTTTTCAAATTTGCAGGT+CGG - chr4_3:7896265-7896284 Msa0627580:CDS 30.0%
! GAGAAATTGGGAATTGTTTT+TGG + chr4_3:7896446-7896465 None:intergenic 30.0%
!!! ATGTGATTTCTGGAATTTTC+TGG + chr4_3:7896493-7896512 None:intergenic 30.0%
!!! CGGATTTTTGAAACTTTTTG+AGG + chr4_3:7897041-7897060 None:intergenic 30.0%
AACCACAAATTAGTGTAGAT+CGG + chr4_3:7897296-7897315 None:intergenic 30.0%
TGTGGTTTATTCGTGATTTA+TGG - chr4_3:7897309-7897328 Msa0627580:intron 30.0%
AAGAGAAGAGAGAGAAATTA+GGG - chr4_3:7897405-7897424 Msa0627580:intron 30.0%
GGGTTATAAATGATTTAGAC+CGG - chr4_3:7897425-7897444 Msa0627580:intron 30.0%
AATATAAAAGTAAGGGAGAC+CGG + chr4_3:7897447-7897466 None:intergenic 30.0%
!! ATATGATGTAGCTTGTGTTT+TGG - chr4_3:7897787-7897806 Msa0627580:CDS 30.0%
AAGACCAAGATACAAATTTG+TGG + chr4_3:7897915-7897934 None:intergenic 30.0%
TTTGAACATCGTCATGATAT+GGG - chr4_3:7898078-7898097 Msa0627580:intron 30.0%
TTAGCAAGATCTTGTCAAAA+AGG + chr4_3:7898204-7898223 None:intergenic 30.0%
AAGACCATAGAATGTAAACT+AGG - chr4_3:7898474-7898493 Msa0627580:CDS 30.0%
AGACCATAGAATGTAAACTA+GGG - chr4_3:7898475-7898494 Msa0627580:CDS 30.0%
CATAAGATTGTGAAATTGTG+AGG + chr4_3:7898786-7898805 None:intergenic 30.0%
!! TGGAATTTTGAAGAATGAGA+GGG + chr4_3:7898823-7898842 None:intergenic 30.0%
!! TTGGAATTTTGAAGAATGAG+AGG + chr4_3:7898824-7898843 None:intergenic 30.0%
!! ACATTTTTGGAAGAGAACTA+CGG - chr4_3:7898879-7898898 Msa0627580:intron 30.0%
TTTCTAAGTCAAGAATTGGA+GGG + chr4_3:7898993-7899012 None:intergenic 30.0%
! TTTTCTAAGTCAAGAATTGG+AGG + chr4_3:7898994-7899013 None:intergenic 30.0%
! GAGTTTTCTAAGTCAAGAAT+TGG + chr4_3:7898997-7899016 None:intergenic 30.0%
TCTTGACTTAGAAAACTCTT+AGG - chr4_3:7898999-7899018 Msa0627580:intron 30.0%
AAAATAAAGACGGTTCCTAT+AGG - chr4_3:7899072-7899091 Msa0627580:intron 30.0%
TAACGACTATAGTATCCTAT+AGG + chr4_3:7899090-7899109 None:intergenic 30.0%
ATAGGATACTATAGTCGTTA+TGG - chr4_3:7899090-7899109 Msa0627580:intron 30.0%
TAGGATACTATAGTCGTTAT+GGG - chr4_3:7899091-7899110 Msa0627580:intron 30.0%
!!! ATCTCATTTTTTCTTGGGAA+GGG + chr4_3:7899186-7899205 None:intergenic 30.0%
!!! TATCTCATTTTTTCTTGGGA+AGG + chr4_3:7899187-7899206 None:intergenic 30.0%
!! TCTGTTTTATCTTGGTTTTC+GGG + chr4_3:7899250-7899269 None:intergenic 30.0%
! ATACGTCATCTGTTTTATCT+TGG + chr4_3:7899258-7899277 None:intergenic 30.0%
ATTTATATTTGGATACTCCC+CGG + chr4_3:7899335-7899354 None:intergenic 30.0%
!!! AGTACTGATGTGTTCTTTTT+TGG - chr4_3:7899504-7899523 Msa0627580:intron 30.0%
!! TAAGTTTGAAGAGTTGGTAA+TGG + chr4_3:7899948-7899967 None:intergenic 30.0%
GTATGTTAAGTTTGAAGAGT+TGG + chr4_3:7899954-7899973 None:intergenic 30.0%
TCAAACTTAACATACCAAGA+TGG - chr4_3:7899959-7899978 Msa0627580:intron 30.0%
GAATAGTTATATGACCATCT+TGG + chr4_3:7899976-7899995 None:intergenic 30.0%
AATAAGTTAGAGGAGTGAAT+GGG + chr4_3:7900415-7900434 None:intergenic 30.0%
AAATAAGTTAGAGGAGTGAA+TGG + chr4_3:7900416-7900435 None:intergenic 30.0%
! GATAGTGGTAGTATACTATA+AGG - chr4_3:7900731-7900750 Msa0627580:intron 30.0%
ATATGTCCAGTAAGATTGAA+GGG + chr4_3:7900912-7900931 None:intergenic 30.0%
AGTTATATTCAATGTCATGC+TGG + chr4_3:7901205-7901224 None:intergenic 30.0%
!! GGTATTTTTCGACTTAACAA+AGG - chr4_3:7901670-7901689 Msa0627580:intron 30.0%
AGTGTTAAATATCTTGAGTG+AGG - chr4_3:7901726-7901745 Msa0627580:intron 30.0%
AACTAATCGAGAAACTTATG+AGG + chr4_3:7901826-7901845 None:intergenic 30.0%
!!! GCTTTTTCATTTCATGCTAT+CGG + chr4_3:7901877-7901896 None:intergenic 30.0%
CAGCAAATGAAGAAGATTAA+TGG + chr4_3:7901985-7902004 None:intergenic 30.0%
! GTTTAAGGTGAAAACTCAAA+AGG + chr4_3:7902284-7902303 None:intergenic 30.0%
CTTAAACTAGTTCCAAATCT+GGG - chr4_3:7902297-7902316 Msa0627580:intron 30.0%
!!! GTCTCTTCAAGTTTTGATTT+TGG - chr4_3:7902349-7902368 Msa0627580:intron 30.0%
!!! CTTCAAGTTTTGATTTTGGT+TGG - chr4_3:7902353-7902372 Msa0627580:intron 30.0%
TGATTAACAACAATCACCAT+TGG + chr4_3:7902494-7902513 None:intergenic 30.0%
GCAAAAACAATGAAAGAACT+AGG + chr4_3:7902687-7902706 None:intergenic 30.0%
AATTCACTTCAAATTGACAG+AGG + chr4_3:7902778-7902797 None:intergenic 30.0%
TGTATGTGTTAATGCTTCAT+AGG - chr4_3:7902885-7902904 Msa0627580:intron 30.0%
AATGCTTCATAGGTTATGTT+TGG - chr4_3:7902895-7902914 Msa0627580:intron 30.0%
TAAACCAATTAATCACCAGA+AGG + chr4_3:7902953-7902972 None:intergenic 30.0%
AACATCTCCATAAACATTCA+CGG + chr4_3:7903025-7903044 None:intergenic 30.0%
! ATGTCGTTTGAATCCTAAAT+TGG - chr4_3:7903050-7903069 Msa0627580:intron 30.0%
AGTGTCTCTATATTGGAATT+TGG - chr4_3:7903087-7903106 Msa0627580:intron 30.0%
TGAGATAGAAAATTGCATTC+TGG + chr4_3:7903152-7903171 None:intergenic 30.0%
AATCAAATTTCAGGAGTTAC+TGG + chr4_3:7903330-7903349 None:intergenic 30.0%
GACGAAACTAATCAAATTTC+AGG + chr4_3:7903339-7903358 None:intergenic 30.0%
CACTAACAAAATTCTTACTC+AGG + chr4_3:7903423-7903442 None:intergenic 30.0%
! CTGAGTAAGAATTTTGTTAG+TGG - chr4_3:7903421-7903440 Msa0627580:intron 30.0%
TGAAATTTCATAAACATCCC+TGG + chr4_3:7903511-7903530 None:intergenic 30.0%
! AAAATCATTTTGGACCTTGA+AGG + chr4_3:7903567-7903586 None:intergenic 30.0%
! GACAACATTTTGTACCAAAT+AGG + chr4_3:7903651-7903670 None:intergenic 30.0%
TGGTACAAAATGTTGTCAAA+TGG - chr4_3:7903654-7903673 Msa0627580:intron 30.0%
TACAAAATGTTGTCAAATGG+CGG - chr4_3:7903657-7903676 Msa0627580:intron 30.0%
TTTCATGTGAAACCAATTTG+AGG - chr4_3:7903780-7903799 Msa0627580:intron 30.0%
TTCATGTGAAACCAATTTGA+GGG - chr4_3:7903781-7903800 Msa0627580:intron 30.0%
TCAATAACATTCCAATGAGA+TGG + chr4_3:7903838-7903857 None:intergenic 30.0%
ATTGAAGCTTTACCTTCTTA+TGG - chr4_3:7903853-7903872 Msa0627580:intron 30.0%
AGATACAAGAGCTTGATAAA+TGG - chr4_3:7903901-7903920 Msa0627580:intron 30.0%
GATAGAAGCAAGAACAAATT+TGG + chr4_3:7903972-7903991 None:intergenic 30.0%
! TTCTTGCTTCTATCAAGTTT+TGG - chr4_3:7903978-7903997 Msa0627580:intron 30.0%
GATATAATTTCAACGAGATG+AGG + chr4_3:7904132-7904151 None:intergenic 30.0%
GTAAGCTATTGACATTTGAA+AGG + chr4_3:7904763-7904782 None:intergenic 30.0%
GAAGATTGTTATGTTTCCAT+TGG - chr4_3:7904859-7904878 Msa0627580:CDS 30.0%
AATTTCTCTCAAAAGTGGAT+GGG - chr4_3:7904891-7904910 Msa0627580:CDS 30.0%
CTTATATGTACTTTCTCACT+TGG + chr4_3:7904943-7904962 None:intergenic 30.0%
! GTGAGAAAGTACATATAAGA+AGG - chr4_3:7904944-7904963 Msa0627580:CDS 30.0%
AAATGTTAACATGCTCTATC+AGG + chr4_3:7905041-7905060 None:intergenic 30.0%
TGCTTTATCACACATAGAAA+TGG - chr4_3:7905125-7905144 Msa0627580:intron 30.0%
TATACAGCAATTTCAGCTAA+AGG - chr4_3:7905156-7905175 Msa0627580:intron 30.0%
ATTTCAGCTAAAGGTAATTC+TGG - chr4_3:7905165-7905184 Msa0627580:intron 30.0%
TTTGGATCAAATTTGTCATC+AGG + chr4_3:7905198-7905217 None:intergenic 30.0%
AATGTTATGTGATGCAAAAG+TGG + chr4_3:7905228-7905247 None:intergenic 30.0%
TTTGCATCACATAACATTGA+AGG - chr4_3:7905230-7905249 Msa0627580:intron 30.0%
ATTCCGTTTCTTCAAGTAAA+TGG - chr4_3:7905352-7905371 Msa0627580:intron 30.0%
TTCCGTTTCTTCAAGTAAAT+GGG - chr4_3:7905353-7905372 Msa0627580:intron 30.0%
TTCCCATTTACTTGAAGAAA+CGG + chr4_3:7905358-7905377 None:intergenic 30.0%
ATGACGAAGAAGAATTTGAA+GGG + chr4_3:7905443-7905462 None:intergenic 30.0%
ATAAACTGTTCTCAAAACAC+TGG - chr4_3:7905509-7905528 Msa0627580:intron 30.0%
AGAATCAAATTTGGTATCCA+AGG + chr4_3:7905576-7905595 None:intergenic 30.0%
TCATTTGCCAATTGAGAATA+GGG - chr4_3:7905648-7905667 Msa0627580:intron 30.0%
!! CATTTTGAGTCCTTTTGTAA+AGG + chr4_3:7905821-7905840 None:intergenic 30.0%
AAGTACCTCATTTGTGTAGT+TGG - chr4_3:7896027-7896046 Msa0627580:three_prime_UTR 35.0%
ATGAACCAACTACACAAATG+AGG + chr4_3:7896035-7896054 None:intergenic 35.0%
AGGACGTAAAGGCAAATAAT+AGG + chr4_3:7896161-7896180 None:intergenic 35.0%
CGACCTGCAAATTTGAAAAA+AGG + chr4_3:7896267-7896286 None:intergenic 35.0%
TCCAAGTGTCAGTCTATAAA+AGG - chr4_3:7896372-7896391 Msa0627580:CDS 35.0%
CCAAGTGTCAGTCTATAAAA+GGG - chr4_3:7896373-7896392 Msa0627580:CDS 35.0%
CAAGTGTCAGTCTATAAAAG+GGG - chr4_3:7896374-7896393 Msa0627580:CDS 35.0%
!!! GGGAATTGTTTTTGGTGATT+TGG + chr4_3:7896438-7896457 None:intergenic 35.0%
GATGATCAGAGAGAGAAATT+GGG + chr4_3:7896458-7896477 None:intergenic 35.0%
TGATGATCAGAGAGAGAAAT+TGG + chr4_3:7896459-7896478 None:intergenic 35.0%
GTGATGAATTGAGGTAGTTA+GGG + chr4_3:7896547-7896566 None:intergenic 35.0%
TGTGATGAATTGAGGTAGTT+AGG + chr4_3:7896548-7896567 None:intergenic 35.0%
TACGAACTTGTGATGAATTG+AGG + chr4_3:7896556-7896575 None:intergenic 35.0%
AATCTATGCTTGAATTGCGA+AGG + chr4_3:7896678-7896697 None:intergenic 35.0%
ATTCAAGCATAGATTCGTCA+AGG - chr4_3:7896683-7896702 Msa0627580:CDS 35.0%
ATTTGTGATCACGAAGGATT+TGG - chr4_3:7896710-7896729 Msa0627580:CDS 35.0%
AAGATTTACCTGCTGGAATT+TGG + chr4_3:7896922-7896941 None:intergenic 35.0%
ATTCGGAAACGATAGAGTAT+GGG + chr4_3:7896970-7896989 None:intergenic 35.0%
TATTCGGAAACGATAGAGTA+TGG + chr4_3:7896971-7896990 None:intergenic 35.0%
TTTACGGTTTCGAAACGTTT+CGG + chr4_3:7897061-7897080 None:intergenic 35.0%
ACATCAAGATCGAAACGTTT+CGG - chr4_3:7897146-7897165 Msa0627580:intron 35.0%
ATATCAAGATCCAGAACGTT+TGG - chr4_3:7897267-7897286 Msa0627580:intron 35.0%
AATCCATGTTCGTTGTGAAA+AGG - chr4_3:7897336-7897355 Msa0627580:intron 35.0%
GAAGAGAAGAGAGAGAAATT+AGG - chr4_3:7897404-7897423 Msa0627580:intron 35.0%
!! GGTCTCCCTTACTTTTATAT+TGG - chr4_3:7897446-7897465 Msa0627580:intron 35.0%
TATATTGGAGTGAACCGAAT+TGG - chr4_3:7897461-7897480 Msa0627580:intron 35.0%
AAAACGGAAAAAAGAAACCC+AGG + chr4_3:7897615-7897634 None:intergenic 35.0%
!!! GCAAAGTTTTGGACATGTAA+GGG + chr4_3:7897681-7897700 None:intergenic 35.0%
!!! AGCAAAGTTTTGGACATGTA+AGG + chr4_3:7897682-7897701 None:intergenic 35.0%
CTTGCCACAAATTTGTATCT+TGG - chr4_3:7897908-7897927 Msa0627580:intron 35.0%
TACTTGTGTTGCAAGTTATG+TGG - chr4_3:7897962-7897981 Msa0627580:intron 35.0%
CTTTGAACATCGTCATGATA+TGG - chr4_3:7898077-7898096 Msa0627580:intron 35.0%
TTGAACATCGTCATGATATG+GGG - chr4_3:7898079-7898098 Msa0627580:intron 35.0%
TAGAGCTATAGAGATGAAGT+GGG + chr4_3:7898388-7898407 None:intergenic 35.0%
TTAGAGCTATAGAGATGAAG+TGG + chr4_3:7898389-7898408 None:intergenic 35.0%
ATGCCCTAGTTTACATTCTA+TGG + chr4_3:7898481-7898500 None:intergenic 35.0%
TAAACTAGGGCATGATGTAA+AGG - chr4_3:7898488-7898507 Msa0627580:CDS 35.0%
! CATTTTGCAAAAGAAAGCCA+AGG + chr4_3:7898753-7898772 None:intergenic 35.0%
!! CTTGGCTTTCTTTTGCAAAA+TGG - chr4_3:7898751-7898770 Msa0627580:intron 35.0%
!! AGAAAGTATCAGACAGGTAT+CGG + chr4_3:7899303-7899322 None:intergenic 35.0%
GATACTTTCTGATACGTATC+CGG - chr4_3:7899313-7899332 Msa0627580:intron 35.0%
ATACTTTCTGATACGTATCC+GGG - chr4_3:7899314-7899333 Msa0627580:intron 35.0%
! AGCACTAACAATGTTCCTTT+TGG - chr4_3:7899559-7899578 Msa0627580:intron 35.0%
! TCATTGATGTATAGCACTGA+TGG - chr4_3:7899592-7899611 Msa0627580:intron 35.0%
ATGTTAATGTACTACGAGTC+TGG - chr4_3:7899689-7899708 Msa0627580:intron 35.0%
AAAATGGGATAACCTAAGAG+TGG - chr4_3:7900234-7900253 Msa0627580:intron 35.0%
AGAGAGATTAGAACTAGAAG+GGG + chr4_3:7900390-7900409 None:intergenic 35.0%
CAGAGAGATTAGAACTAGAA+GGG + chr4_3:7900391-7900410 None:intergenic 35.0%
ATAAGTTAGAGGAGTGAATG+GGG + chr4_3:7900414-7900433 None:intergenic 35.0%
GATATGTCCAGTAAGATTGA+AGG + chr4_3:7900913-7900932 None:intergenic 35.0%
CAAATTCAACTCGTTAACGT+CGG - chr4_3:7900943-7900962 Msa0627580:intron 35.0%
GAAGGATAGAGTATGTGATA+AGG + chr4_3:7900976-7900995 None:intergenic 35.0%
CTAGACTAGATCAATAATCG+CGG + chr4_3:7901106-7901125 None:intergenic 35.0%
CACACACACATACATAAATG+AGG - chr4_3:7901386-7901405 Msa0627580:intron 35.0%
! AATTGTTTGAAACGGCTTCA+TGG + chr4_3:7901477-7901496 None:intergenic 35.0%
! GCCGTTTCAAACAATTTTGT+CGG - chr4_3:7901481-7901500 Msa0627580:intron 35.0%
GCCGACAAAATTGTTTGAAA+CGG + chr4_3:7901485-7901504 None:intergenic 35.0%
ACTAATATCTCGAATCGAGT+AGG + chr4_3:7901772-7901791 None:intergenic 35.0%
! CCAGATTTGGAACTAGTTTA+AGG + chr4_3:7902299-7902318 None:intergenic 35.0%
CCTTAAACTAGTTCCAAATC+TGG - chr4_3:7902296-7902315 Msa0627580:intron 35.0%
AAGCAATATAGTCCCAGATT+TGG + chr4_3:7902312-7902331 None:intergenic 35.0%
GCATATACAAGCCAAACAAA+AGG + chr4_3:7902472-7902491 None:intergenic 35.0%
GAAGTGATTCTCTCATTGAT+TGG - chr4_3:7902636-7902655 Msa0627580:intron 35.0%
CTTTCCTTCTGGTGATTAAT+TGG - chr4_3:7902946-7902965 Msa0627580:intron 35.0%
! TGGTTTATGTGACCTTTTTC+AGG - chr4_3:7902966-7902985 Msa0627580:intron 35.0%
!!! TTTATGTGACCTTTTTCAGG+TGG - chr4_3:7902969-7902988 Msa0627580:intron 35.0%
TGAATCCTAAATTGGATCCT+AGG - chr4_3:7903058-7903077 Msa0627580:intron 35.0%
!! ATATTGGAATTTGGTGCAGT+TGG - chr4_3:7903096-7903115 Msa0627580:intron 35.0%
! TCTCAAGTCATTTGCTGATA+AGG - chr4_3:7903167-7903186 Msa0627580:intron 35.0%
! CTCAAGTCATTTGCTGATAA+GGG - chr4_3:7903168-7903187 Msa0627580:intron 35.0%
!! GAAAAAGGTGCTGTCATTAT+TGG - chr4_3:7903269-7903288 Msa0627580:intron 35.0%
CTGGTAAAAAATGAAGCAAG+AGG + chr4_3:7903311-7903330 None:intergenic 35.0%
!!! TTTCGTCTTTTTTATGTGCG+AGG - chr4_3:7903352-7903371 Msa0627580:intron 35.0%
! GAATTTTGTTAGTGGTTTCG+TGG - chr4_3:7903429-7903448 Msa0627580:intron 35.0%
ACGAGGATCAAGCTTATTAA+GGG - chr4_3:7903476-7903495 Msa0627580:intron 35.0%
AACCAATTTGAGGGTAATTG+AGG - chr4_3:7903790-7903809 Msa0627580:intron 35.0%
!! AGGAGTGGTTTTTCTTGTTT+AGG - chr4_3:7903810-7903829 Msa0627580:intron 35.0%
! TTGTTTAGGATCCATCTCAT+TGG - chr4_3:7903824-7903843 Msa0627580:intron 35.0%
CTTGATAAATGGTAACCAGT+TGG - chr4_3:7903912-7903931 Msa0627580:intron 35.0%
TTACTAACCTGGTACTATAC+CGG + chr4_3:7904376-7904395 None:intergenic 35.0%
CTGTTATCCTCATTGTGAAA+TGG - chr4_3:7904415-7904434 Msa0627580:intron 35.0%
CTTCAGATTGAATGAGTGTT+CGG - chr4_3:7904462-7904481 Msa0627580:intron 35.0%
TTGAATGTAAGCACACATGT+TGG - chr4_3:7904591-7904610 Msa0627580:intron 35.0%
AAAGGTTGTCTATGAAGTAC+TGG + chr4_3:7904745-7904764 None:intergenic 35.0%
AGAAATTGCGTCAAAACCAA+TGG + chr4_3:7904878-7904897 None:intergenic 35.0%
CAATTTCTCTCAAAAGTGGA+TGG - chr4_3:7904890-7904909 Msa0627580:CDS 35.0%
GATCAGTACGGCATTAAATA+TGG - chr4_3:7904913-7904932 Msa0627580:CDS 35.0%
! TCATTTGGTACTGAAATGTC+TGG - chr4_3:7905000-7905019 Msa0627580:CDS 35.0%
ATTGAGTTCAGAACAACCAA+AGG - chr4_3:7905078-7905097 Msa0627580:intron 35.0%
GGAAAGAATATCACAATTGC+TGG - chr4_3:7905261-7905280 Msa0627580:intron 35.0%
! GAAAGGCATATGTTTGTGAA+GGG + chr4_3:7905312-7905331 None:intergenic 35.0%
! TGAAAGGCATATGTTTGTGA+AGG + chr4_3:7905313-7905332 None:intergenic 35.0%
AGAAACGGAATTTGTAGACA+AGG + chr4_3:7905343-7905362 None:intergenic 35.0%
ATGGGAATGTTCAAATGTCT+CGG - chr4_3:7905371-7905390 Msa0627580:CDS 35.0%
GATGACGAAGAAGAATTTGA+AGG + chr4_3:7905444-7905463 None:intergenic 35.0%
!!! TATTTTGACCAAGACTCATG+AGG + chr4_3:7905476-7905495 None:intergenic 35.0%
GTCATTTGCCAATTGAGAAT+AGG - chr4_3:7905647-7905666 Msa0627580:intron 35.0%
GAATGTACCCTATTCTCAAT+TGG + chr4_3:7905658-7905677 None:intergenic 35.0%
!! TTTGGTAGTGCCTTTACAAA+AGG - chr4_3:7905808-7905827 Msa0627580:intron 35.0%
TTTCACTGTAAAGCATGTAG+TGG - chr4_3:7905881-7905900 Msa0627580:intron 35.0%
!! TGTAAAGCATGTAGTGGATT+TGG - chr4_3:7905887-7905906 Msa0627580:intron 35.0%
AAAGACTAAAATGCCCCCTA+GGG + chr4_3:7895815-7895834 None:intergenic 40.0%
AAAAGACTAAAATGCCCCCT+AGG + chr4_3:7895816-7895835 None:intergenic 40.0%
!! TTTGAGTCGTTTTAGTCCCT+AGG - chr4_3:7895955-7895974 Msa0627580:three_prime_UTR 40.0%
!! TTGAGTCGTTTTAGTCCCTA+GGG - chr4_3:7895956-7895975 Msa0627580:three_prime_UTR 40.0%
AAATGACCAAAATGCCCCTA+GGG + chr4_3:7895974-7895993 None:intergenic 40.0%
CACAAAATTTCGACAGAGAG+AGG - chr4_3:7895996-7896015 Msa0627580:three_prime_UTR 40.0%
! CCCTTTTATAGACTGACACT+TGG + chr4_3:7896376-7896395 None:intergenic 40.0%
!! CTTGGTGTTCATGTGATTTC+TGG + chr4_3:7896503-7896522 None:intergenic 40.0%
CAGTTAGGGATGAATGTTCT+TGG + chr4_3:7896521-7896540 None:intergenic 40.0%
GGTAGTTAGGGTTTCAGTTA+GGG + chr4_3:7896535-7896554 None:intergenic 40.0%
AGGTAGTTAGGGTTTCAGTT+AGG + chr4_3:7896536-7896555 None:intergenic 40.0%
! CTTCGTTTCTCGAACTTTTC+TGG + chr4_3:7896786-7896805 None:intergenic 40.0%
GGAGATTCGAGCAAAAAGAA+CGG + chr4_3:7896901-7896920 None:intergenic 40.0%
GTCCGATCTACACTAATTTG+TGG - chr4_3:7897291-7897310 Msa0627580:intron 40.0%
! GTTCCTTTTCACAACGAACA+TGG + chr4_3:7897342-7897361 None:intergenic 40.0%
AAAACATGTGAAGACGAGAG+AGG - chr4_3:7897369-7897388 Msa0627580:CDS 40.0%
TGGACTATCCAAACGTATCA+GGG + chr4_3:7897572-7897591 None:intergenic 40.0%
!! GATGTAGCTTGTGTTTTGGA+TGG - chr4_3:7897791-7897810 Msa0627580:CDS 40.0%
CAACAAGCACATGCATCAAT+TGG + chr4_3:7897871-7897890 None:intergenic 40.0%
TGAACATCGTCATGATATGG+GGG - chr4_3:7898080-7898099 Msa0627580:intron 40.0%
AGAGCTATAGAGATGAAGTG+GGG + chr4_3:7898387-7898406 None:intergenic 40.0%
TTCACAATCTTATGCCCTTG+AGG - chr4_3:7898792-7898811 Msa0627580:intron 40.0%
!! TTTTGAAGAATGAGAGGGAG+AGG + chr4_3:7898818-7898837 None:intergenic 40.0%
!! TTTTTGGAAGAGAACTACGG+TGG - chr4_3:7898882-7898901 Msa0627580:intron 40.0%
! GGTGGATTTGATCCCTTAAA+CGG - chr4_3:7898900-7898919 Msa0627580:intron 40.0%
GTGGATTTGATCCCTTAAAC+GGG - chr4_3:7898901-7898920 Msa0627580:intron 40.0%
!! CGTATCAGAAAGTATCAGAC+AGG + chr4_3:7899309-7899328 None:intergenic 40.0%
TACTTTCTGATACGTATCCG+GGG - chr4_3:7899315-7899334 Msa0627580:intron 40.0%
ACACAAGTATCCGTGAGTAT+CGG + chr4_3:7899394-7899413 None:intergenic 40.0%
AGGTATTCTAATGTGAAGCC+CGG + chr4_3:7899871-7899890 None:intergenic 40.0%
ATAAAACTCACTTTCGGCTC+AGG + chr4_3:7899924-7899943 None:intergenic 40.0%
TCAAACTAGACTGTGAGTCA+GGG + chr4_3:7900267-7900286 None:intergenic 40.0%
ATCTTCTCCATGATTGGAGT+GGG - chr4_3:7900320-7900339 Msa0627580:intron 40.0%
ACAGAAGAGAAACAGGAGAA+TGG + chr4_3:7900351-7900370 None:intergenic 40.0%
TGGATTGACAGAAGAGAAAC+AGG + chr4_3:7900358-7900377 None:intergenic 40.0%
GCAGAGAGATTAGAACTAGA+AGG + chr4_3:7900392-7900411 None:intergenic 40.0%
CCAACACAACCTATCATTGT+TGG + chr4_3:7900689-7900708 None:intergenic 40.0%
CCAACAATGATAGGTTGTGT+TGG - chr4_3:7900686-7900705 Msa0627580:intron 40.0%
CGTATACCCTTCAATCTTAC+TGG - chr4_3:7900903-7900922 Msa0627580:intron 40.0%
! GAGAACATAGGACTTTTGAG+TGG + chr4_3:7901239-7901258 None:intergenic 40.0%
! CTGATTTGTGGTGAGAACAT+AGG + chr4_3:7901251-7901270 None:intergenic 40.0%
GTACTTACAAGCATCTTCTC+AGG + chr4_3:7902215-7902234 None:intergenic 40.0%
GCTTGTAAGTACGTTTCACT+CGG - chr4_3:7902223-7902242 Msa0627580:intron 40.0%
CTTGTAAGTACGTTTCACTC+GGG - chr4_3:7902224-7902243 Msa0627580:intron 40.0%
!! GTTTGGCTTGTATATGCCAA+TGG - chr4_3:7902475-7902494 Msa0627580:intron 40.0%
! AATCTGGGATACTTTCCTTC+TGG - chr4_3:7902935-7902954 Msa0627580:intron 40.0%
AGCAATGCCGTGAATGTTTA+TGG - chr4_3:7903015-7903034 Msa0627580:intron 40.0%
TCCAATATAGAGACACTGTG+TGG + chr4_3:7903084-7903103 None:intergenic 40.0%
! AAGTCATTTGCTGATAAGGG+TGG - chr4_3:7903171-7903190 Msa0627580:intron 40.0%
! TTTTCCAAAAGAGGGTGAGA+TGG + chr4_3:7903254-7903273 None:intergenic 40.0%
!! TCTCACCCTCTTTTGGAAAA+AGG - chr4_3:7903254-7903273 Msa0627580:intron 40.0%
! CAGCACCTTTTTCCAAAAGA+GGG + chr4_3:7903262-7903281 None:intergenic 40.0%
! ACAGCACCTTTTTCCAAAAG+AGG + chr4_3:7903263-7903282 None:intergenic 40.0%
TGCTGTCATTATTGGATCTC+AGG - chr4_3:7903277-7903296 Msa0627580:intron 40.0%
TGACTAACAAAAGAGACACG+AGG - chr4_3:7903459-7903478 Msa0627580:intron 40.0%
CACGAGGATCAAGCTTATTA+AGG - chr4_3:7903475-7903494 Msa0627580:intron 40.0%
CTCCTCAATTACCCTCAAAT+TGG + chr4_3:7903795-7903814 None:intergenic 40.0%
ATTTGAGGGTAATTGAGGAG+TGG - chr4_3:7903795-7903814 Msa0627580:intron 40.0%
TTATGACCACATCTTCCAAC+TGG + chr4_3:7903930-7903949 None:intergenic 40.0%
TTGGAAGATGTGGTCATAAC+AGG - chr4_3:7903931-7903950 Msa0627580:intron 40.0%
TCAATGGTTCCATTATTGCC+TGG + chr4_3:7904051-7904070 None:intergenic 40.0%
! GGCAATAATGGAACCATTGA+TGG - chr4_3:7904051-7904070 Msa0627580:intron 40.0%
! AATGGAACCATTGATGGCAA+TGG - chr4_3:7904057-7904076 Msa0627580:intron 40.0%
! AACCATTGATGGCAATGGAA+TGG - chr4_3:7904062-7904081 Msa0627580:intron 40.0%
AACCATTCCATTGCCATCAA+TGG + chr4_3:7904067-7904086 None:intergenic 40.0%
! TTGATGGCAATGGAATGGTT+TGG - chr4_3:7904067-7904086 Msa0627580:intron 40.0%
TTTACCTGCAATAAACAGGG+TGG + chr4_3:7904212-7904231 None:intergenic 40.0%
TACTATACCGGCAGTATAAG+GGG + chr4_3:7904364-7904383 None:intergenic 40.0%
GTACTATACCGGCAGTATAA+GGG + chr4_3:7904365-7904384 None:intergenic 40.0%
! GAAGTGTCAATGCTACATAG+AGG + chr4_3:7904446-7904465 None:intergenic 40.0%
AGTTGGACACAAGCATGTAT+TGG + chr4_3:7904491-7904510 None:intergenic 40.0%
CCAACTATGAGGCAAAAACA+CGG - chr4_3:7904505-7904524 Msa0627580:intron 40.0%
! GTGTCGATGTTAGTCACTTA+TGG + chr4_3:7904637-7904656 None:intergenic 40.0%
GTCAATAGCTTACCAAACCT+TGG - chr4_3:7904770-7904789 Msa0627580:intron 40.0%
GACGCAATTTCTCTCAAAAG+TGG - chr4_3:7904886-7904905 Msa0627580:CDS 40.0%
AAAAGTGGATGGGATCAGTA+CGG - chr4_3:7904901-7904920 Msa0627580:CDS 40.0%
GTTCATCTTCGTGCATTTAC+CGG - chr4_3:7904967-7904986 Msa0627580:CDS 40.0%
ACCAAATGAAATAGCAGAGC+CGG + chr4_3:7904989-7905008 None:intergenic 40.0%
! TTTGGTACTGAAATGTCTGG+TGG - chr4_3:7905003-7905022 Msa0627580:CDS 40.0%
TTCAGAACAACCAAAGGAAG+AGG - chr4_3:7905084-7905103 Msa0627580:intron 40.0%
TATGTAACCACCTCTTCCTT+TGG + chr4_3:7905097-7905116 None:intergenic 40.0%
!!! TGCAAAAGTGGAAGTGCTTT+TGG + chr4_3:7905216-7905235 None:intergenic 40.0%
TGGGAATGTTCAAATGTCTC+GGG - chr4_3:7905372-7905391 Msa0627580:CDS 40.0%
CCAAGTTCTTGACAAGGTTT+AGG + chr4_3:7905417-7905436 None:intergenic 40.0%
CCTAAACCTTGTCAAGAACT+TGG - chr4_3:7905414-7905433 Msa0627580:intron 40.0%
TGTTACTACCTCATGAGTCT+TGG - chr4_3:7905465-7905484 Msa0627580:intron 40.0%
CTGTTCTCAAAACACTGGAT+TGG - chr4_3:7905514-7905533 Msa0627580:intron 40.0%
TTTGAGTCAGTTTAGCCCCT+AGG - chr4_3:7895796-7895815 Msa0627580:three_prime_UTR 45.0%
TTGAGTCAGTTTAGCCCCTA+GGG - chr4_3:7895797-7895816 Msa0627580:three_prime_UTR 45.0%
AAGACTAAAATGCCCCCTAG+GGG + chr4_3:7895814-7895833 None:intergenic 45.0%
!! TGAGTCGTTTTAGTCCCTAG+GGG - chr4_3:7895957-7895976 Msa0627580:three_prime_UTR 45.0%
!!! TTTAGTCCCTAGGGGCATTT+TGG - chr4_3:7895965-7895984 Msa0627580:three_prime_UTR 45.0%
GAAATGACCAAAATGCCCCT+AGG + chr4_3:7895975-7895994 None:intergenic 45.0%
! TGGACTGACGATTTGGACAA+AGG + chr4_3:7896320-7896339 None:intergenic 45.0%
CGTATTCTGGACTGACGATT+TGG + chr4_3:7896327-7896346 None:intergenic 45.0%
AATCGTCAGTCCAGAATACG+TGG - chr4_3:7896327-7896346 Msa0627580:CDS 45.0%
TGGCACGTAATGATTCGTGT+TGG + chr4_3:7896418-7896437 None:intergenic 45.0%
GGACGAATTTGTGATCACGA+AGG - chr4_3:7896704-7896723 Msa0627580:CDS 45.0%
!! TGATCACGAAGGATTTGGTG+AGG - chr4_3:7896715-7896734 Msa0627580:CDS 45.0%
!! GATCACGAAGGATTTGGTGA+GGG - chr4_3:7896716-7896735 Msa0627580:CDS 45.0%
CGAATCAAGAAGTTCACCAG+AGG - chr4_3:7896846-7896865 Msa0627580:CDS 45.0%
TAATACTCTCCTCTTGCCTC+TGG + chr4_3:7896865-7896884 None:intergenic 45.0%
TCGAATCTCCAAATTCCAGC+AGG - chr4_3:7896911-7896930 Msa0627580:intron 45.0%
GAGTCTGAAGATTTACCTGC+TGG + chr4_3:7896929-7896948 None:intergenic 45.0%
! CCGGTTCGAATGAACCAATT+CGG + chr4_3:7897478-7897497 None:intergenic 45.0%
! CCGAATTGGTTCATTCGAAC+CGG - chr4_3:7897475-7897494 Msa0627580:intron 45.0%
! ACCGTCTGATCTAGGGTTTA+GGG - chr4_3:7897527-7897546 Msa0627580:CDS 45.0%
ACCCTAAACCCTAGATCAGA+CGG + chr4_3:7897531-7897550 None:intergenic 45.0%
CTGGACTATCCAAACGTATC+AGG + chr4_3:7897573-7897592 None:intergenic 45.0%
CTGATACGTTTGGATAGTCC+AGG - chr4_3:7897571-7897590 Msa0627580:CDS 45.0%
TCCAGGATCCATATTCCCTT+TGG - chr4_3:7897588-7897607 Msa0627580:CDS 45.0%
CCAGGATCCATATTCCCTTT+GGG - chr4_3:7897589-7897608 Msa0627580:CDS 45.0%
AAAAGAAACCCAGGCCCAAA+GGG + chr4_3:7897606-7897625 None:intergenic 45.0%
AAAAAGAAACCCAGGCCCAA+AGG + chr4_3:7897607-7897626 None:intergenic 45.0%
GAACATCGTCATGATATGGG+GGG - chr4_3:7898081-7898100 Msa0627580:intron 45.0%
AACATCGTCATGATATGGGG+GGG - chr4_3:7898082-7898101 Msa0627580:intron 45.0%
AGCTATAGAGATGAAGTGGG+GGG + chr4_3:7898385-7898404 None:intergenic 45.0%
GAGCTATAGAGATGAAGTGG+GGG + chr4_3:7898386-7898405 None:intergenic 45.0%
GGGCATGATGTAAAGGACAA+TGG - chr4_3:7898495-7898514 Msa0627580:CDS 45.0%
TGTGATGTGTGTGCATGTGT+CGG + chr4_3:7898537-7898556 None:intergenic 45.0%
!! GCAATGGGATTTTGATCCCA+AGG + chr4_3:7898682-7898701 None:intergenic 45.0%
TTGCCTACGTACCCGTTTAA+GGG + chr4_3:7898915-7898934 None:intergenic 45.0%
GCGCGCGTAGAAAATAAAGA+CGG - chr4_3:7899062-7899081 Msa0627580:intron 45.0%
AGCAAAACCCTTGAGAATCG+AGG + chr4_3:7899154-7899173 None:intergenic 45.0%
! GTATCGGTGCAAGATACACA+GGG + chr4_3:7899287-7899306 None:intergenic 45.0%
CACAAGTATCCGTGAGTATC+GGG + chr4_3:7899393-7899412 None:intergenic 45.0%
!!! AGCACTGATGGTGCTCTTTT+TGG - chr4_3:7899604-7899623 Msa0627580:intron 45.0%
TCCGTATCGTATCTCGTATC+CGG - chr4_3:7899849-7899868 Msa0627580:intron 45.0%
GTCAAACTAGACTGTGAGTC+AGG + chr4_3:7900268-7900287 None:intergenic 45.0%
GCTAGCATCTTCTCCATGAT+TGG - chr4_3:7900314-7900333 Msa0627580:intron 45.0%
CATCTTCTCCATGATTGGAG+TGG - chr4_3:7900319-7900338 Msa0627580:intron 45.0%
GAAGAGAAACAGGAGAATGG+TGG + chr4_3:7900348-7900367 None:intergenic 45.0%
TGGCTGCATAGTGTTCTGTT+CGG + chr4_3:7901450-7901469 None:intergenic 45.0%
! TGAAACGGCTTCATGGATTG+TGG + chr4_3:7901470-7901489 None:intergenic 45.0%
AGAGAAGAAGCAGGAACAAG+AGG + chr4_3:7902081-7902100 None:intergenic 45.0%
GCAAAAGGGTCAGAGACTAA+AGG + chr4_3:7902183-7902202 None:intergenic 45.0%
TCAGGTCAAAGCTGGCAAAA+GGG + chr4_3:7902197-7902216 None:intergenic 45.0%
AGAGCAATGCCACCTGAAAA+AGG + chr4_3:7902981-7903000 None:intergenic 45.0%
TGTGGCCTAGGATCCAATTT+AGG + chr4_3:7903066-7903085 None:intergenic 45.0%
GCCACACAGTGTCTCTATAT+TGG - chr4_3:7903080-7903099 Msa0627580:intron 45.0%
!! GAATTTGGTGCAGTTGGAGA+TGG - chr4_3:7903102-7903121 Msa0627580:intron 45.0%
! TATTAAGGGCACACGTATCC+AGG - chr4_3:7903490-7903509 Msa0627580:intron 45.0%
! ATTAAGGGCACACGTATCCA+GGG - chr4_3:7903491-7903510 Msa0627580:intron 45.0%
CTTTACCTTCTTATGGCCGA+GGG - chr4_3:7903860-7903879 Msa0627580:intron 45.0%
AAGCTCTTGTATCTTCCGTC+AGG + chr4_3:7903895-7903914 None:intergenic 45.0%
TGGTAACCAGTTGGAAGATG+TGG - chr4_3:7903921-7903940 Msa0627580:intron 45.0%
! ATGGCAATGGAATGGTTTGG+TGG - chr4_3:7904070-7904089 Msa0627580:intron 45.0%
!! TGGCAATGGAATGGTTTGGT+GGG - chr4_3:7904071-7904090 Msa0627580:intron 45.0%
ATGAGGACGACTGTGGTTAA+GGG + chr4_3:7904115-7904134 None:intergenic 45.0%
GGTACTATACCGGCAGTATA+AGG + chr4_3:7904366-7904385 None:intergenic 45.0%
TATACTGCCGGTATAGTACC+AGG - chr4_3:7904366-7904385 Msa0627580:intron 45.0%
! GGCATTGCCATTTCACAATG+AGG + chr4_3:7904425-7904444 None:intergenic 45.0%
CATGCTTGTGTCCAACTATG+AGG - chr4_3:7904494-7904513 Msa0627580:intron 45.0%
!! CCGTGTTTTTGCCTCATAGT+TGG + chr4_3:7904508-7904527 None:intergenic 45.0%
TAGCTTACCAAACCTTGGTG+AGG - chr4_3:7904775-7904794 Msa0627580:intron 45.0%
AGCTTACCAAACCTTGGTGA+GGG - chr4_3:7904776-7904795 Msa0627580:intron 45.0%
!! ACCGGCTCTGCTATTTCATT+TGG - chr4_3:7904985-7905004 Msa0627580:CDS 45.0%
AGAACAACCAAAGGAAGAGG+TGG - chr4_3:7905087-7905106 Msa0627580:intron 45.0%
ACAATTGCTGGAAGCTTGAG+TGG - chr4_3:7905273-7905292 Msa0627580:intron 45.0%
! TGTCTCGGGATTTTCAGACT+CGG - chr4_3:7905386-7905405 Msa0627580:CDS 45.0%
GGGTTACCAAGTTCTTGACA+AGG + chr4_3:7905423-7905442 None:intergenic 45.0%
!! AAACACTGGATTGGCGTAAG+TGG - chr4_3:7905523-7905542 Msa0627580:intron 45.0%
! GTGCGAGTGTTGTAAATCCT+TGG - chr4_3:7905556-7905575 Msa0627580:intron 45.0%
TGAGTCAGTTTAGCCCCTAG+GGG - chr4_3:7895798-7895817 Msa0627580:three_prime_UTR 50.0%
TGTGTGACTGCCACGTATTC+TGG + chr4_3:7896340-7896359 None:intergenic 50.0%
AATACGTGGCAGTCACACAC+AGG - chr4_3:7896341-7896360 Msa0627580:CDS 50.0%
TAGACTGACACTTGGACCTG+CGG + chr4_3:7896368-7896387 None:intergenic 50.0%
TGGTGAGGGAAGAGAAGAAG+AGG - chr4_3:7896730-7896749 Msa0627580:CDS 50.0%
AGAAGTTCACCAGAGGCAAG+AGG - chr4_3:7896853-7896872 Msa0627580:CDS 50.0%
AGATCGGACACCAAACGTTC+TGG + chr4_3:7897280-7897299 None:intergenic 50.0%
TTGGTTCATTCGAACCGGTC+TGG - chr4_3:7897480-7897499 Msa0627580:intron 50.0%
GATCAGACGGTGCAAGCAAA+TGG + chr4_3:7897518-7897537 None:intergenic 50.0%
TTGCTTGCACCGTCTGATCT+AGG - chr4_3:7897519-7897538 Msa0627580:CDS 50.0%
TGCTTGCACCGTCTGATCTA+GGG - chr4_3:7897520-7897539 Msa0627580:CDS 50.0%
! CACCGTCTGATCTAGGGTTT+AGG - chr4_3:7897526-7897545 Msa0627580:CDS 50.0%
! TGATCTAGGGTTTAGGGTCC+TGG - chr4_3:7897533-7897552 Msa0627580:CDS 50.0%
! GATCTAGGGTTTAGGGTCCT+GGG - chr4_3:7897534-7897553 Msa0627580:CDS 50.0%
TCCAACGTCCCTGATACGTT+TGG - chr4_3:7897561-7897580 Msa0627580:CDS 50.0%
TCCAAACGTATCAGGGACGT+TGG + chr4_3:7897565-7897584 None:intergenic 50.0%
CCCAAAGGGAATATGGATCC+TGG + chr4_3:7897592-7897611 None:intergenic 50.0%
ATCCATATTCCCTTTGGGCC+TGG - chr4_3:7897594-7897613 Msa0627580:CDS 50.0%
TCCATATTCCCTTTGGGCCT+GGG - chr4_3:7897595-7897614 Msa0627580:CDS 50.0%
ACATCGTCATGATATGGGGG+GGG - chr4_3:7898083-7898102 Msa0627580:intron 50.0%
TATAGAGATGAAGTGGGGGG+GGG + chr4_3:7898382-7898401 None:intergenic 50.0%
CTATAGAGATGAAGTGGGGG+GGG + chr4_3:7898383-7898402 None:intergenic 50.0%
GCTATAGAGATGAAGTGGGG+GGG + chr4_3:7898384-7898403 None:intergenic 50.0%
GATCCCTTAAACGGGTACGT+AGG - chr4_3:7898909-7898928 Msa0627580:intron 50.0%
CTTGCCTACGTACCCGTTTA+AGG + chr4_3:7898916-7898935 None:intergenic 50.0%
CTTAAACGGGTACGTAGGCA+AGG - chr4_3:7898914-7898933 Msa0627580:intron 50.0%
!! TTTCGCTACGGGAAGGTGTT+AGG + chr4_3:7899119-7899138 None:intergenic 50.0%
!! GAGTTGTTTTCGCTACGGGA+AGG + chr4_3:7899126-7899145 None:intergenic 50.0%
!! TCCGGGAGTTGTTTTCGCTA+CGG + chr4_3:7899131-7899150 None:intergenic 50.0%
AACCCTTGAGAATCGAGGTC+CGG + chr4_3:7899149-7899168 None:intergenic 50.0%
!! GGTATCGGTGCAAGATACAC+AGG + chr4_3:7899288-7899307 None:intergenic 50.0%
CCCGGATACGAGATACGATA+CGG + chr4_3:7899853-7899872 None:intergenic 50.0%
CCGTATCGTATCTCGTATCC+GGG - chr4_3:7899850-7899869 Msa0627580:intron 50.0%
TCAGGAGAGGCGACCTTAAT+AGG + chr4_3:7899906-7899925 None:intergenic 50.0%
CAGGGACATAAGCCACTCTT+AGG + chr4_3:7900249-7900268 None:intergenic 50.0%
TCATGGAGAAGATGCTAGCC+TGG + chr4_3:7900313-7900332 None:intergenic 50.0%
TGCCACCATTCTATACCACC+TGG - chr4_3:7901174-7901193 Msa0627580:intron 50.0%
TGCCAGGTGGTATAGAATGG+TGG + chr4_3:7901179-7901198 None:intergenic 50.0%
CAGTGCCAGGTGGTATAGAA+TGG + chr4_3:7901182-7901201 None:intergenic 50.0%
GAGAGAGAGAGAGAAGAAGC+AGG + chr4_3:7902090-7902109 None:intergenic 50.0%
CTCAGGTCAAAGCTGGCAAA+AGG + chr4_3:7902198-7902217 None:intergenic 50.0%
GCATCTTCTCAGGTCAAAGC+TGG + chr4_3:7902205-7902224 None:intergenic 50.0%
ACACATACACGTGATCAGCG+CGG + chr4_3:7902874-7902893 None:intergenic 50.0%
ATAGAGACACTGTGTGGCCT+AGG + chr4_3:7903078-7903097 None:intergenic 50.0%
TCTATGTGCCACCAGGAAAC+TGG - chr4_3:7903202-7903221 Msa0627580:intron 50.0%
CTACCAGTAAGCCAGTTTCC+TGG + chr4_3:7903216-7903235 None:intergenic 50.0%
! CTAGCCATCTCACCCTCTTT+TGG - chr4_3:7903247-7903266 Msa0627580:intron 50.0%
TGAGACGCTTGTCACCTTCA+AGG - chr4_3:7903550-7903569 Msa0627580:intron 50.0%
GCTTTACCTTCTTATGGCCG+AGG - chr4_3:7903859-7903878 Msa0627580:intron 50.0%
TCTTTCCCTCGGCCATAAGA+AGG + chr4_3:7903868-7903887 None:intergenic 50.0%
CGTCAGGAACATCTTTCCCT+CGG + chr4_3:7903879-7903898 None:intergenic 50.0%
CGAGGGAAAGATGTTCCTGA+CGG - chr4_3:7903877-7903896 Msa0627580:intron 50.0%
!! ATGGAATGGTTTGGTGGGAC+TGG - chr4_3:7904076-7904095 Msa0627580:intron 50.0%
GATGAGGACGACTGTGGTTA+AGG + chr4_3:7904116-7904135 None:intergenic 50.0%
ACAGGGTGGATGCTATATGC+TGG + chr4_3:7904198-7904217 None:intergenic 50.0%
GCATCCACCCTGTTTATTGC+AGG - chr4_3:7904205-7904224 Msa0627580:intron 50.0%
GCAGTATAAGGGGATTCTGG+AGG + chr4_3:7904354-7904373 None:intergenic 50.0%
CCAGAATCCCCTTATACTGC+CGG - chr4_3:7904354-7904373 Msa0627580:intron 50.0%
!! ACGATACTGACTCTGACTCG+TGG - chr4_3:7904537-7904556 Msa0627580:intron 50.0%
AAGTGACCCTCACCAAGGTT+TGG + chr4_3:7904785-7904804 None:intergenic 50.0%
TAGCTAAGTGACCCTCACCA+AGG + chr4_3:7904790-7904809 None:intergenic 50.0%
!! ACTGGATTGGCGTAAGTGGT+TGG - chr4_3:7905527-7905546 Msa0627580:intron 50.0%
GAGTCAGTTTAGCCCCTAGG+GGG - chr4_3:7895799-7895818 Msa0627580:three_prime_UTR 55.0%
ACGGTGCAAGCAAATGGTCC+AGG + chr4_3:7897512-7897531 None:intergenic 55.0%
ACCCAGGCCCAAAGGGAATA+TGG + chr4_3:7897599-7897618 None:intergenic 55.0%
CATCGTCATGATATGGGGGG+GGG - chr4_3:7898084-7898103 Msa0627580:intron 55.0%
ATCGTCATGATATGGGGGGG+GGG - chr4_3:7898085-7898104 Msa0627580:intron 55.0%
ATAGAGATGAAGTGGGGGGG+GGG + chr4_3:7898381-7898400 None:intergenic 55.0%
ATGAGAGGGAGAGGCCTCAA+GGG + chr4_3:7898809-7898828 None:intergenic 55.0%
AATGAGAGGGAGAGGCCTCA+AGG + chr4_3:7898810-7898829 None:intergenic 55.0%
!! CCGGGAGTTGTTTTCGCTAC+GGG + chr4_3:7899130-7899149 None:intergenic 55.0%
CCCGTAGCGAAAACAACTCC+CGG - chr4_3:7899127-7899146 Msa0627580:intron 55.0%
TCCCGGACCTCGATTCTCAA+GGG - chr4_3:7899144-7899163 Msa0627580:intron 55.0%
ACCCTTGAGAATCGAGGTCC+GGG + chr4_3:7899148-7899167 None:intergenic 55.0%
!! CCGTGAGTATCGGGACGTAT+CGG + chr4_3:7899384-7899403 None:intergenic 55.0%
CCGATACGTCCCGATACTCA+CGG - chr4_3:7899381-7899400 Msa0627580:intron 55.0%
ACTCACTTTCGGCTCAGGAG+AGG + chr4_3:7899919-7899938 None:intergenic 55.0%
CCTGGCAGCATTCACTTGAC+AGG + chr4_3:7900295-7900314 None:intergenic 55.0%
CCTGTCAAGTGAATGCTGCC+AGG - chr4_3:7900292-7900311 Msa0627580:intron 55.0%
ACTAGAAGGGGTCGAGCATG+TGG + chr4_3:7900378-7900397 None:intergenic 55.0%
AATGTCATGCTGGCAGTGCC+AGG + chr4_3:7901195-7901214 None:intergenic 55.0%
CCAGTAAGCCAGTTTCCTGG+TGG + chr4_3:7903213-7903232 None:intergenic 55.0%
! CCACCAGGAAACTGGCTTAC+TGG - chr4_3:7903210-7903229 Msa0627580:intron 55.0%
CAACGAGATGAGGACGACTG+TGG + chr4_3:7904122-7904141 None:intergenic 55.0%
CCGGCAGTATAAGGGGATTC+TGG + chr4_3:7904357-7904376 None:intergenic 55.0%
! GAACCGGTCTGGTTCACTCC+TGG - chr4_3:7897491-7897510 Msa0627580:intron 60.0%
GGTCCAGGAGTGAACCAGAC+CGG + chr4_3:7897497-7897516 None:intergenic 60.0%
CAGGGACGTTGGATTGACCC+AGG + chr4_3:7897554-7897573 None:intergenic 60.0%
TCGTCATGATATGGGGGGGG+GGG - chr4_3:7898086-7898105 Msa0627580:intron 60.0%
TAGAGATGAAGTGGGGGGGG+GGG + chr4_3:7898380-7898399 None:intergenic 60.0%
CTCCCGGACCTCGATTCTCA+AGG - chr4_3:7899143-7899162 Msa0627580:intron 60.0%
GGTGGTGCCCACTCCAATCA+TGG + chr4_3:7900330-7900349 None:intergenic 60.0%
GCTCAGCTCTATGTGCCACC+AGG - chr4_3:7903195-7903214 Msa0627580:intron 60.0%
GCAGTCACACACAGGTCCGC+AGG - chr4_3:7896349-7896368 Msa0627580:CDS 65.0%
CGTCATGATATGGGGGGGGG+GGG - chr4_3:7898087-7898106 Msa0627580:intron 65.0%
GTCATGATATGGGGGGGGGG+GGG - chr4_3:7898088-7898107 Msa0627580:intron 65.0%
TCATGATATGGGGGGGGGGG+GGG - chr4_3:7898089-7898108 Msa0627580:intron 65.0%
AGAGATGAAGTGGGGGGGGG+GGG + chr4_3:7898379-7898398 None:intergenic 65.0%
GTCATGCTGGCAGTGCCAGG+TGG + chr4_3:7901192-7901211 None:intergenic 65.0%
CATGATATGGGGGGGGGGGG+GGG - chr4_3:7898090-7898109 Msa0627580:intron 70.0%
ATGATATGGGGGGGGGGGGG+GGG - chr4_3:7898091-7898110 Msa0627580:intron 70.0%
AGATGAAGTGGGGGGGGGGG+GGG + chr4_3:7898377-7898396 None:intergenic 70.0%
GAGATGAAGTGGGGGGGGGG+GGG + chr4_3:7898378-7898397 None:intergenic 70.0%
TGATATGGGGGGGGGGGGGG+GGG - chr4_3:7898092-7898111 Msa0627580:intron 75.0%
ATGAAGTGGGGGGGGGGGGG+GGG + chr4_3:7898375-7898394 None:intergenic 75.0%
GATGAAGTGGGGGGGGGGGG+GGG + chr4_3:7898376-7898395 None:intergenic 75.0%
! GATATGGGGGGGGGGGGGGG+GGG - chr4_3:7898093-7898112 Msa0627580:intron 80.0%
! ATATGGGGGGGGGGGGGGGG+GGG - chr4_3:7898094-7898113 Msa0627580:intron 80.0%
! TGAAGTGGGGGGGGGGGGGG+GGG + chr4_3:7898374-7898393 None:intergenic 80.0%
! TATGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898095-7898114 Msa0627580:intron 85.0%
! AAGTGGGGGGGGGGGGGGGG+GGG + chr4_3:7898372-7898391 None:intergenic 85.0%
! GAAGTGGGGGGGGGGGGGGG+GGG + chr4_3:7898373-7898392 None:intergenic 85.0%
! ATGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898096-7898115 Msa0627580:intron 90.0%
!! GGGGGGGGGGGGGGGGGCAT+AGG - chr4_3:7898118-7898137 Msa0627580:intron 90.0%
! AGTGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898371-7898390 None:intergenic 90.0%
! TGGGGGGGGGGGGGGGGGGG+GGG - chr4_3:7898097-7898116 Msa0627580:intron 95.0%
! TGGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898097-7898116 None:intergenic 95.0%
! GTGGGGGGGGGGGGGGGGGG+GGG + chr4_3:7898370-7898389 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 7895728 7905998 7895728 ID=Msa0627580;Name=Msa0627580
chr4_3 mRNA 7895728 7905998 7895728 ID=Msa0627580-mRNA-1;Parent=Msa0627580;Name=Msa0627580-mRNA-1;_AED=0.18;_eAED=0.18;_QI=0|0.42|0.5|0.62|1|1|8|489|577
chr4_3 exon 7895728 7896890 7895728 ID=Msa0627580-mRNA-1:exon:2294;Parent=Msa0627580-mRNA-1
chr4_3 exon 7897339 7897409 7897339 ID=Msa0627580-mRNA-1:exon:2293;Parent=Msa0627580-mRNA-1
chr4_3 exon 7897500 7897674 7897500 ID=Msa0627580-mRNA-1:exon:2292;Parent=Msa0627580-mRNA-1
chr4_3 exon 7897774 7897894 7897774 ID=Msa0627580-mRNA-1:exon:2291;Parent=Msa0627580-mRNA-1
chr4_3 exon 7898451 7898738 7898451 ID=Msa0627580-mRNA-1:exon:2290;Parent=Msa0627580-mRNA-1
chr4_3 exon 7904794 7905087 7904794 ID=Msa0627580-mRNA-1:exon:2289;Parent=Msa0627580-mRNA-1
chr4_3 exon 7905356 7905415 7905356 ID=Msa0627580-mRNA-1:exon:2288;Parent=Msa0627580-mRNA-1
chr4_3 exon 7905948 7905998 7905948 ID=Msa0627580-mRNA-1:exon:2287;Parent=Msa0627580-mRNA-1
chr4_3 CDS 7905948 7905998 7905948 ID=Msa0627580-mRNA-1:cds;Parent=Msa0627580-mRNA-1
chr4_3 CDS 7905356 7905415 7905356 ID=Msa0627580-mRNA-1:cds;Parent=Msa0627580-mRNA-1
chr4_3 CDS 7904794 7905087 7904794 ID=Msa0627580-mRNA-1:cds;Parent=Msa0627580-mRNA-1
chr4_3 CDS 7898451 7898738 7898451 ID=Msa0627580-mRNA-1:cds;Parent=Msa0627580-mRNA-1
chr4_3 CDS 7897774 7897894 7897774 ID=Msa0627580-mRNA-1:cds;Parent=Msa0627580-mRNA-1
chr4_3 CDS 7897500 7897674 7897500 ID=Msa0627580-mRNA-1:cds;Parent=Msa0627580-mRNA-1
chr4_3 CDS 7897339 7897409 7897339 ID=Msa0627580-mRNA-1:cds;Parent=Msa0627580-mRNA-1
chr4_3 CDS 7896217 7896890 7896217 ID=Msa0627580-mRNA-1:cds;Parent=Msa0627580-mRNA-1
chr4_3 three_prime_UTR 7895728 7896216 7895728 ID=Msa0627580-mRNA-1:three_prime_utr;Parent=Msa0627580-mRNA-1
Gene Sequence

>Msa0627580

ATGGTTGGAATAAGCCCTTATTTCAACCCTATGTCAAAATCCATTGCAAAAAAGGATCCTTTGTCCAAATCGTCAGTCCAGAATACGTGGCAGTCACACACAGGTCCGCAGAAGATTCTCAGAAAAAGCATCATCACTGAATCTTCACCTTCGCAATTCAAGCATAGATTCGTCAAGGACGAATTTGTGATCACGAAGGATTTGGTGAGGGAAGAGAAGAAGAGGATCGAAGCAGAAACGAAGAAGAATCAAATACCAGAAAAGTTCGAGAAACGAAGAGTGAGAAGACGAAGAGAACTTCGATTTATTTTCGAAGTTCGAATCAAGAAGTTCACCAGAGGCAAGAGGAGAGTATTAGATCATCTTCTCACCGTTCTTTTTGCTCGAATCTCCAAATTCCAGCAGGTGGCATTGCTCTTGCTTCTTGCATTGAGCAATGCCGTGAATGTTTATGGAGATGTTGAGATATGTCGTTTGAATCCTAAATTGGATCCTAGGCCACACAGTGTCTCTATATTGGAATTTGGTGCAGTTGGAGATGGTAAAACACTGAATACAATTGCATTCCAGAATGCAATTTTCTATCTCAAGTCATTTGCTGATAAGGGTGGTGCTCAGCTCTATGTGCCACCAGGAAACTGGCTTACTGGTAGTTTCAATCTTACTAGCCATCTCACCCTCTTTTGGAAAAAGGATCCATCTCATTGGAATGTTATTGAAGCTTTACCTTCTTATGGCCGAGGGAAAGATGTTCCTGACGGAAGATACAAGAGCTTGATAAATGGTAACCAGTTGGAAGATGTGGTCATAACAGGCAATAATGGAACCATTGATGGCAATGGAATGGTTTGGTGGGACTGGTTTAAGTCTCATTCCCTTAACCACAGTCGTCCTCATCTCGTTGAAATTATATCATCTGATTTTGTGGTAGTTTCAAATCTTACATTCTTGAATGCTCCAGCATATAGCATCCACCCTGTTTATTGCAGCAATGTACATATTCAAAACATTTCAATCTCTACTCCTCCAGAATCCCCTTATACTGCCGGTATAGTACCAGATTCTTCTGATAATGTTTGTATAGAAGATTGTTATGTTTCCATTGGTTTTGACGCAATTTCTCTCAAAAGTGGATGGGATCAGTACGGCATTAAATATGGAAGACCAAGTGAGAAAGTACATATAAGAAGGGTTCATCTTCGTGCATTTACCGGCTCTGCTATTTCATTTGGTACTGAAATGTCTGGTGGAATTTCAAAAGTCCTGATAGAGCATGTTAACATTTTCAACTCAAATAGTGGCATTGAGTTCAGAACAACCAAAGGAAGAGGTGGTTACATAAAAGAAATTGCTTTATCACACATAGAAATGGAAAATGTTTATACAGCAATTTCAGCTAAAGGTAATTCTGGTTCTCATCCTGATGACAAATTTGATCCAAAAGCACTTCCACTTTTGCATCACATAACATTGAAGGATATAACTGGAAAGAATATCACAATTGCTGGAAGCTTGAGTGGAATAGAAGAATCACCCTTCACAAACATATGCCTTTCAAATATAACCTTGTCTACAAATTCCGTTTCTTCAAGTAAATGGGAATGTTCAAATGTCTCGGGATTTTCAGACTCGGTGTTGCCTAAACCTTGTCAAGAACTTGGTAACCCTTCAAATTCTTCTTCGTCATCGTGTTACTACCTCATGAGTCTTGGTCAAAATACTGCAGCGATTTAA
Protein sequence

>Msa0627580

MVGISPYFNPMSKSIAKKDPLSKSSVQNTWQSHTGPQKILRKSIITESSPSQFKHRFVKDEFVITKDLVREEKKRIEAETKKNQIPEKFEKRRVRRRRELRFIFEVRIKKFTRGKRRVLDHLLTVLFARISKFQQVALLLLLALSNAVNVYGDVEICRLNPKLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGNWLTGSFNLTSHLTLFWKKDPSHWNVIEALPSYGRGKDVPDGRYKSLINGNQLEDVVITGNNGTIDGNGMVWWDWFKSHSLNHSRPHLVEIISSDFVVVSNLTFLNAPAYSIHPVYCSNVHIQNISISTPPESPYTAGIVPDSSDNVCIEDCYVSIGFDAISLKSGWDQYGIKYGRPSEKVHIRRVHLRAFTGSAISFGTEMSGGISKVLIEHVNIFNSNSGIEFRTTKGRGGYIKEIALSHIEMENVYTAISAKGNSGSHPDDKFDPKALPLLHHITLKDITGKNITIAGSLSGIEESPFTNICLSNITLSTNSVSSSKWECSNVSGFSDSVLPKPCQELGNPSNSSSSSCYYLMSLGQNTAAI*