AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0287660

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0287660 MtrunA17_Chr2g0295241 97.788 452 10 0 1 452 1 452 0.0 902
Msa0287660 MtrunA17_Chr4g0067811 72.851 442 117 2 12 451 13 453 0.0 660
Msa0287660 MtrunA17_Chr7g0270821 52.318 453 206 5 2 449 7 454 7.60e-168 480
Msa0287660 MtrunA17_Chr1g0193961 57.071 396 167 2 33 428 39 431 2.99e-163 469
Msa0287660 MtrunA17_Chr8g0387391 50.761 394 193 1 33 425 40 433 8.51e-147 427
Msa0287660 MtrunA17_Chr7g0255311 48.478 427 215 3 7 428 32 458 1.04e-145 424
Msa0287660 MtrunA17_Chr1g0202651 48.662 411 206 2 23 428 37 447 3.55e-142 415
Msa0287660 MtrunA17_Chr3g0095221 49.395 413 195 4 33 439 43 447 5.97e-140 409
Msa0287660 MtrunA17_Chr1g0202641 47.319 429 224 2 2 428 19 447 2.94e-138 421
Msa0287660 MtrunA17_Chr1g0202641 48.139 403 208 1 28 429 546 948 3.02e-133 408
Msa0287660 MtrunA17_Chr1g0202621 49.118 397 195 2 33 428 44 434 3.90e-137 402
Msa0287660 MtrunA17_Chr7g0248451 46.098 410 220 1 33 441 51 460 3.98e-136 400
Msa0287660 MtrunA17_Chr8g0348491 43.750 464 249 3 1 452 16 479 1.92e-134 395
Msa0287660 MtrunA17_Chr3g0130251 49.510 408 203 2 32 439 71 475 3.85e-132 389
Msa0287660 MtrunA17_Chr5g0442221 49.752 404 196 4 30 428 37 438 3.08e-129 381
Msa0287660 MtrunA17_Chr4g0070281 42.995 414 231 3 17 428 58 468 9.63e-125 371
Msa0287660 MtrunA17_Chr2g0301091 44.417 403 220 3 28 428 49 449 8.02e-123 365
Msa0287660 MtrunA17_Chr2g0319881 56.069 173 75 1 1 173 8 179 3.62e-60 194
Msa0287660 MtrunA17_Chr8g0365901 24.450 409 268 14 37 436 65 441 3.46e-21 95.9
Msa0287660 MtrunA17_Chr7g0258111 27.529 425 235 17 30 428 41 418 9.07e-21 94.7
Msa0287660 MtrunA17_Chr6g0449961 26.498 317 194 10 29 339 37 320 1.67e-20 93.6
Msa0287660 MtrunA17_Chr5g0418411 26.220 328 186 10 38 348 30 318 6.19e-19 88.6
Msa0287660 MtrunA17_Chr3g0121891 24.634 410 244 13 2 398 4 361 1.51e-18 87.4
Msa0287660 MtrunA17_Chr5g0413141 25.153 326 194 11 28 335 47 340 2.56e-18 87.0
Msa0287660 MtrunA17_Chr7g0230891 25.061 407 241 16 38 425 38 399 1.04e-17 84.7
Msa0287660 MtrunA17_Chr1g0173451 21.220 410 260 11 23 413 58 423 1.24e-17 85.1
Msa0287660 MtrunA17_Chr6g0468871 42.857 77 44 0 230 306 22 98 6.48e-16 73.2
Msa0287660 MtrunA17_Chr6g0461181 23.356 441 262 16 33 428 27 436 1.36e-15 78.6
Msa0287660 MtrunA17_Chr5g0413411 23.864 352 194 10 28 339 110 427 1.98e-15 78.6
Msa0287660 MtrunA17_Chr4g0043661 24.252 301 187 10 38 330 24 291 1.04e-14 75.5
Msa0287660 MtrunA17_Chr1g0194231 26.019 319 191 10 37 339 81 370 1.36e-14 75.9
Msa0287660 MtrunA17_Chr4g0020771 23.273 275 187 4 150 413 168 429 1.73e-14 75.1
Msa0287660 MtrunA17_Chr8g0337571 25.402 311 183 10 39 339 33 304 2.02e-14 74.7
Msa0287660 MtrunA17_Chr4g0052621 27.492 331 185 13 31 339 55 352 2.58e-14 74.7
Msa0287660 MtrunA17_Chr3g0121881 23.961 409 250 14 36 425 32 398 1.19e-12 69.3
Msa0287660 MtrunA17_Chr3g0100091 24.096 332 224 7 96 422 33 341 2.83e-12 67.8
Msa0287660 MtrunA17_Chr2g0332801 28.643 199 118 5 150 339 157 340 2.91e-12 68.6
Msa0287660 MtrunA17_Chr2g0303941 24.444 405 250 14 36 425 27 390 5.04e-12 67.4
Msa0287660 MtrunA17_Chr8g0337581 22.750 400 245 13 39 422 33 384 5.98e-12 67.0
Msa0287660 MtrunA17_Chr3g0089021 23.003 313 210 7 116 413 128 424 1.91e-11 65.9
Msa0287660 MtrunA17_Chr7g0228411 23.371 445 253 15 23 423 26 426 2.94e-11 65.1
Msa0287660 MtrunA17_Chr6g0468861 46.429 56 30 0 343 398 14 69 3.26e-11 59.3
Msa0287660 MtrunA17_Chr4g0067631 24.242 363 216 12 2 339 7 335 3.75e-11 64.7
Msa0287660 MtrunA17_Chr2g0293681 25.225 333 196 12 27 340 57 355 4.42e-11 64.7
Msa0287660 MtrunA17_Chr4g0043431 23.691 401 256 15 38 425 36 399 8.97e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0287660 AT3G16850.1 63.946 441 152 3 1 440 3 437 0.0 583
Msa0287660 AT3G06770.2 63.636 440 154 3 1 434 1 440 0.0 565
Msa0287660 AT3G06770.5 63.699 438 153 3 3 434 4 441 0.0 564
Msa0287660 AT5G49215.1 65.617 413 140 2 18 428 24 436 0.0 551
Msa0287660 AT5G49215.2 65.617 413 140 2 18 428 22 434 0.0 551
Msa0287660 AT3G06770.1 65.135 370 129 0 65 434 2 371 2.75e-175 496
Msa0287660 AT3G06770.3 65.135 370 129 0 65 434 2 371 2.75e-175 496
Msa0287660 AT3G62110.1 53.596 431 197 3 1 428 6 436 1.16e-166 478
Msa0287660 AT3G62110.2 53.596 431 197 3 1 428 6 436 1.16e-166 478
Msa0287660 AT3G06770.4 60.704 341 134 0 94 434 13 353 3.26e-146 421
Msa0287660 AT3G48950.1 49.626 401 200 2 30 428 38 438 6.34e-146 425
Msa0287660 AT4G23820.1 48.492 431 212 3 3 428 6 431 1.68e-142 415
Msa0287660 AT4G23500.1 50.378 397 196 1 33 428 64 460 1.36e-141 415
Msa0287660 AT3G61490.2 44.700 434 234 2 1 428 4 437 4.43e-137 402
Msa0287660 AT3G61490.3 44.700 434 234 2 1 428 4 437 4.43e-137 402
Msa0287660 AT3G61490.1 44.700 434 234 2 1 428 4 437 4.43e-137 402
Msa0287660 AT3G61490.5 44.700 434 234 2 1 428 19 452 7.92e-137 402
Msa0287660 AT3G61490.4 44.700 434 234 2 1 428 117 550 7.51e-136 403
Msa0287660 AT2G23900.1 46.618 414 217 3 30 441 49 460 1.72e-132 391
Msa0287660 AT4G33440.1 47.529 425 220 2 18 440 51 474 5.20e-132 389
Msa0287660 AT5G41870.1 46.420 433 220 5 1 428 10 435 7.91e-130 383
Msa0287660 AT3G42950.1 41.191 403 233 3 28 428 59 459 2.28e-116 350
Msa0287660 AT1G19170.1 42.169 415 235 4 17 428 69 481 3.59e-114 345
Msa0287660 AT3G15720.1 27.470 415 251 16 35 436 22 399 6.15e-24 104
Msa0287660 AT3G15720.3 27.470 415 251 16 35 436 21 398 6.40e-24 104
Msa0287660 AT3G15720.2 27.470 415 248 17 35 436 21 395 3.82e-22 99.0
Msa0287660 AT1G70500.1 25.628 398 248 13 37 421 67 429 5.12e-21 95.9
Msa0287660 AT1G23460.2 25.564 399 247 15 37 421 43 405 6.27e-21 95.1
Msa0287660 AT1G23460.1 25.313 399 248 14 37 421 67 429 7.69e-21 95.1
Msa0287660 AT2G41850.1 26.434 401 248 13 34 423 65 429 9.41e-21 94.7
Msa0287660 AT3G57510.1 25.455 385 234 12 36 404 67 414 2.20e-20 93.6
Msa0287660 AT3G15720.4 27.922 308 191 10 140 436 48 335 5.87e-20 92.0
Msa0287660 AT3G57790.2 27.134 328 176 11 36 336 34 325 6.34e-18 86.7
Msa0287660 AT3G57790.1 27.134 328 176 11 36 336 34 325 6.34e-18 86.7
Msa0287660 AT3G26610.1 25.240 313 193 9 38 339 68 350 9.53e-17 82.8
Msa0287660 AT5G14650.1 24.601 313 193 10 36 339 50 328 1.14e-16 82.4
Msa0287660 AT5G17200.1 25.987 304 178 8 37 332 39 303 1.19e-16 82.0
Msa0287660 AT1G48100.1 28.037 321 176 14 39 339 82 367 4.86e-16 80.5
Msa0287660 AT3G07970.1 26.545 275 176 6 150 413 167 426 5.64e-16 80.1
Msa0287660 AT1G56710.1 25.625 320 197 9 34 339 45 337 3.95e-15 77.8
Msa0287660 AT2G15470.1 25.610 410 254 15 33 425 27 402 2.50e-14 75.1
Msa0287660 AT1G02790.1 26.074 349 212 11 34 375 49 358 1.18e-13 73.2
Msa0287660 AT1G02460.1 25.857 321 190 12 38 339 90 381 1.46e-13 73.2
Msa0287660 AT2G43860.1 24.939 409 253 16 32 425 28 397 2.19e-13 72.0
Msa0287660 AT2G15460.1 25.686 401 248 14 33 417 27 393 2.90e-13 71.6
Msa0287660 AT3G59850.1 23.821 403 255 13 35 424 21 384 3.66e-13 71.2
Msa0287660 AT2G43870.1 24.868 378 233 11 35 399 19 358 4.41e-13 70.9
Msa0287660 AT3G59850.2 23.441 401 259 11 35 424 65 428 6.30e-13 70.9
Msa0287660 AT2G15450.1 25.245 408 255 14 33 424 27 400 6.88e-13 70.5
Msa0287660 AT1G17150.1 24.331 411 251 13 33 424 29 398 9.10e-13 70.1
Msa0287660 AT5G14650.2 26.009 223 139 7 36 253 50 251 2.61e-12 68.2
Msa0287660 AT2G43880.1 23.383 402 258 15 36 425 30 393 2.65e-12 68.6
Msa0287660 AT1G43080.1 23.133 415 262 16 33 427 27 404 3.46e-12 68.6
Msa0287660 AT1G80170.1 24.213 413 258 14 33 425 46 423 3.90e-12 68.6
Msa0287660 AT2G40310.1 24.455 413 255 16 33 425 27 402 6.25e-12 67.4
Msa0287660 AT4G13760.1 24.578 415 252 16 33 425 27 402 2.81e-11 65.5
Msa0287660 AT1G43100.1 23.134 402 253 15 33 415 27 391 3.32e-11 65.5
Msa0287660 AT1G43090.1 23.134 402 253 15 33 415 27 391 4.00e-11 65.1
Msa0287660 AT4G01890.1 25.000 328 182 12 39 339 67 357 5.53e-11 64.7
Msa0287660 AT3G14040.1 25.329 304 210 9 135 431 150 443 9.00e-11 64.3

Find 130 sgRNAs with CRISPR-Local

Find 242 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCCGTTTCTTCAAGTAAA+TGG 0.088505 2_3:+30755794 Msa0287660:CDS
GTACAAATAATGACCTATTT+TGG 0.177613 2_3:-30756196 None:intergenic
AGCAATGCCGTGAATGTTTA+TGG 0.195198 2_3:+30753455 Msa0287660:CDS
ATTCATGTGTAATGAAATTT+TGG 0.199629 2_3:+30756233 Msa0287660:three_prime_UTR
ATTCTTGCATATTCCAAAAT+AGG 0.253449 2_3:+30756183 Msa0287660:three_prime_UTR
ATGTCGTTTGAATCCTAAAT+TGG 0.263811 2_3:+30753490 Msa0287660:CDS
ATTGAAGCTTTACCTTCTTA+TGG 0.264280 2_3:+30754294 Msa0287660:CDS
GGTACTATACCGGCAGTATA+AGG 0.271970 2_3:-30754805 None:intergenic
ATTTCAGCTAAAGGTAATTC+TGG 0.272185 2_3:+30755607 Msa0287660:CDS
TTATGAGCAAGAATCAAATT+TGG 0.285483 2_3:-30756024 None:intergenic
TGCAAAAGTGGAAGTGCTTT+TGG 0.294030 2_3:-30755655 None:intergenic
ATTATTTACCTGCAATAAAC+AGG 0.300438 2_3:-30754655 None:intergenic
TCATTTGCCAATTGAGAATA+GGG 0.301752 2_3:+30756090 Msa0287660:three_prime_UTR
AGTGTCTCTATATTGGAATT+TGG 0.306110 2_3:+30753527 Msa0287660:CDS
CCACCAGGAAACTGGCTTAC+TGG 0.322724 2_3:+30753650 Msa0287660:CDS
TATGTAACCACCTCTTCCTT+TGG 0.328460 2_3:-30755536 None:intergenic
TGAGATAGAAAATTGCATTC+TGG 0.331713 2_3:-30753589 None:intergenic
TGTGGCCTAGGATCCAATTT+AGG 0.332220 2_3:-30753503 None:intergenic
GATCAGTACGGCATTAAATA+TGG 0.336655 2_3:+30755355 Msa0287660:CDS
GCCACACAGTGTCTCTATAT+TGG 0.338491 2_3:+30753520 Msa0287660:CDS
TTGGAAGATGTGGTCATAAC+AGG 0.339246 2_3:+30754372 Msa0287660:CDS
CCGGCAGTATAAGGGGATTC+TGG 0.339380 2_3:-30754796 None:intergenic
GTTCATCTTCGTGCATTTAC+CGG 0.342309 2_3:+30755409 Msa0287660:CDS
TCTCAAGTCATTTGCTGATA+AGG 0.351226 2_3:+30753607 Msa0287660:CDS
ACCGGCTCTGCTATTTCATT+TGG 0.351598 2_3:+30755427 Msa0287660:CDS
GGAAAGAATATCACAATTGC+TGG 0.353969 2_3:+30755703 Msa0287660:CDS
AAATGTTAACATGCTCTATC+AGG 0.358232 2_3:-30755480 None:intergenic
GGCAATAATGGAACCATTGA+TGG 0.360386 2_3:+30754493 Msa0287660:intron
GTACTATACCGGCAGTATAA+GGG 0.366594 2_3:-30754804 None:intergenic
TATGCAAGAATTGAAATCTA+AGG 0.368433 2_3:-30756171 None:intergenic
TTTGGATCAAATTTGTCATC+AGG 0.370603 2_3:-30755637 None:intergenic
ATGGAATGGTTTGGTGGGAC+TGG 0.373444 2_3:+30754518 Msa0287660:CDS
GATGAGGACGACTGTGGTTA+AGG 0.378902 2_3:-30754555 None:intergenic
TCTATGTGCCACCAGGAAAC+TGG 0.379700 2_3:+30753642 Msa0287660:CDS
TGCTTTATCACACATAGAAA+TGG 0.384138 2_3:+30755567 Msa0287660:CDS
TTCCGTTTCTTCAAGTAAAT+GGG 0.384317 2_3:+30755795 Msa0287660:CDS
GTCATTTGCCAATTGAGAAT+AGG 0.393303 2_3:+30756089 Msa0287660:three_prime_UTR
TATACAGCAATTTCAGCTAA+AGG 0.395099 2_3:+30755598 Msa0287660:CDS
TGCTGTCATTATTGGATCTC+AGG 0.395803 2_3:+30753718 Msa0287660:CDS
CTTATATGTACTTTCTCACT+TGG 0.401622 2_3:-30755382 None:intergenic
CCAAGTTCTTGACAAGGTTT+AGG 0.403560 2_3:-30755856 None:intergenic
ATAACATTGAAGGATATAAC+TGG 0.408428 2_3:+30755682 Msa0287660:CDS
GCATCCACCCTGTTTATTGC+AGG 0.409422 2_3:+30754647 Msa0287660:CDS
AAATAGTGATTTAAGATTGT+AGG 0.410370 2_3:-30756427 None:intergenic
AACCATTCCATTGCCATCAA+TGG 0.414602 2_3:-30754506 None:intergenic
AGATACAAGAGCTTGATAAA+TGG 0.415928 2_3:+30754342 Msa0287660:CDS
CTCAGGTCAAAGCTGGCAAA+AGG 0.418296 2_3:-30752633 None:intergenic
CTCAAGTCATTTGCTGATAA+GGG 0.419974 2_3:+30753608 Msa0287660:CDS
CCTAAACCTTGTCAAGAACT+TGG 0.423904 2_3:+30755856 Msa0287660:CDS
TGAATCCTAAATTGGATCCT+AGG 0.429800 2_3:+30753498 Msa0287660:CDS
TTTGGTAGTGCCTTTACAAA+AGG 0.429852 2_3:+30756251 Msa0287660:three_prime_UTR
TTCCCATTTACTTGAAGAAA+CGG 0.430980 2_3:-30755797 None:intergenic
GAATGTACCCTATTCTCAAT+TGG 0.432022 2_3:-30756097 None:intergenic
TGTAAAGCATGTAGTGGATT+TGG 0.434938 2_3:+30756330 Msa0287660:three_prime_UTR
ATATTGGAATTTGGTGCAGT+TGG 0.436498 2_3:+30753536 Msa0287660:CDS
TTTGCATCACATAACATTGA+AGG 0.443614 2_3:+30755672 Msa0287660:CDS
CTACCAGTAAGCCAGTTTCC+TGG 0.448344 2_3:-30753653 None:intergenic
ATAGAGACACTGTGTGGCCT+AGG 0.453912 2_3:-30753515 None:intergenic
GACGCAATTTCTCTCAAAAG+TGG 0.454842 2_3:+30755328 Msa0287660:CDS
TTGTTTAGGATCCATCTCAT+TGG 0.466913 2_3:+30754265 Msa0287660:intron
TTATGACCACATCTTCCAAC+TGG 0.467822 2_3:-30754368 None:intergenic
ATGAGGACGACTGTGGTTAA+GGG 0.472010 2_3:-30754554 None:intergenic
GAAGATTGTTATGTTTCCAT+TGG 0.475742 2_3:+30755301 Msa0287660:CDS
GTGAGAAAGTACATATAAGA+AGG 0.477334 2_3:+30755386 Msa0287660:CDS
ATGGGAATGTTCAAATGTCT+CGG 0.480367 2_3:+30755813 Msa0287660:CDS
TCATTTGGTACTGAAATGTC+TGG 0.487250 2_3:+30755442 Msa0287660:CDS
AGAATCAAATTTGGTATCCA+AGG 0.488955 2_3:-30756015 None:intergenic
GTGCGAGTGTTGTAAATCCT+TGG 0.493743 2_3:+30755998 Msa0287660:three_prime_UTR
AAGCTCTTGTATCTTCCGTC+AGG 0.495493 2_3:-30754333 None:intergenic
TAGACAAGGTTATATTTGAA+AGG 0.499579 2_3:-30755768 None:intergenic
AACATCTCCATAAACATTCA+CGG 0.500990 2_3:-30753462 None:intergenic
CAATTTCTCTCAAAAGTGGA+TGG 0.507018 2_3:+30755332 Msa0287660:CDS
ATAAACTGTTCTCAAAACAC+TGG 0.508700 2_3:+30755951 Msa0287660:exon
GATGACGAAGAAGAATTTGA+AGG 0.513232 2_3:-30755883 None:intergenic
GCATCTTCTCAGGTCAAAGC+TGG 0.516047 2_3:-30752640 None:intergenic
TGGGAATGTTCAAATGTCTC+GGG 0.517276 2_3:+30755814 Msa0287660:CDS
ACCAAATGAAATAGCAGAGC+CGG 0.517644 2_3:-30755428 None:intergenic
AATGGAACCATTGATGGCAA+TGG 0.521099 2_3:+30754499 Msa0287660:CDS
TCTTTCCCTCGGCCATAAGA+AGG 0.523156 2_3:-30754306 None:intergenic
AGAAGAGAAGCAGGAACAAG+AGG 0.523885 2_3:-30752522 None:intergenic
AATGTTATGTGATGCAAAAG+TGG 0.524613 2_3:-30755667 None:intergenic
TCAATAACATTCCAATGAGA+TGG 0.528619 2_3:-30754276 None:intergenic
TCAGGTCAAAGCTGGCAAAA+GGG 0.533025 2_3:-30752632 None:intergenic
AAACACTGGATTGGCGTAAG+TGG 0.534015 2_3:+30755965 Msa0287660:three_prime_UTR
CCAGAATCCCCTTATACTGC+CGG 0.534389 2_3:+30754796 Msa0287660:CDS
ATTGAAATCTAAGGAATGAA+AGG 0.541989 2_3:-30756162 None:intergenic
GCTTTACCTTCTTATGGCCG+AGG 0.543091 2_3:+30754300 Msa0287660:CDS
ACAATTGCTGGAAGCTTGAG+TGG 0.543463 2_3:+30755715 Msa0287660:CDS
TTTCACTGTAAAGCATGTAG+TGG 0.545854 2_3:+30756324 Msa0287660:three_prime_UTR
CTTGATAAATGGTAACCAGT+TGG 0.546984 2_3:+30754353 Msa0287660:CDS
GTACTTACAAGCATCTTCTC+AGG 0.547748 2_3:-30752650 None:intergenic
TGGTAACCAGTTGGAAGATG+TGG 0.548355 2_3:+30754362 Msa0287660:CDS
CGTCAGGAACATCTTTCCCT+CGG 0.553651 2_3:-30754317 None:intergenic
ACAGGGTGGATGCTATATGC+TGG 0.557217 2_3:-30754637 None:intergenic
AGAAATTGCGTCAAAACCAA+TGG 0.560982 2_3:-30755317 None:intergenic
TTCAGAACAACCAAAGGAAG+AGG 0.562716 2_3:+30755526 Msa0287660:CDS
TTACTAACCTGGTACTATAC+CGG 0.564112 2_3:-30754815 None:intergenic
ATGGCAATGGAATGGTTTGG+TGG 0.564149 2_3:+30754512 Msa0287660:CDS
GAATTTGGTGCAGTTGGAGA+TGG 0.565909 2_3:+30753542 Msa0287660:CDS
CTGTTCTCAAAACACTGGAT+TGG 0.573682 2_3:+30755956 Msa0287660:three_prime_UTR
TGGCAATGGAATGGTTTGGT+GGG 0.576997 2_3:+30754513 Msa0287660:CDS
TTGATGGCAATGGAATGGTT+TGG 0.583352 2_3:+30754509 Msa0287660:CDS
ATGACGAAGAAGAATTTGAA+GGG 0.583947 2_3:-30755882 None:intergenic
TACTATACCGGCAGTATAAG+GGG 0.586797 2_3:-30754803 None:intergenic
TGAGAAAGTACATATAAGAA+GGG 0.590695 2_3:+30755387 Msa0287660:CDS
AGAAACGGAATTTGTAGACA+AGG 0.591928 2_3:-30755782 None:intergenic
CTTTACCTTCTTATGGCCGA+GGG 0.592122 2_3:+30754301 Msa0287660:CDS
TGAAAGGCATATGTTTGTGA+AGG 0.592606 2_3:-30755752 None:intergenic
GCAAAAGGGTCAGAGACTAA+AGG 0.593136 2_3:-30752618 None:intergenic
GATATAATTTCAACGAGATG+AGG 0.595103 2_3:-30754571 None:intergenic
GCTCAGCTCTATGTGCCACC+AGG 0.597340 2_3:+30753635 Msa0287660:CDS
TATACTGCCGGTATAGTACC+AGG 0.604603 2_3:+30754808 Msa0287660:CDS
TGTTACTACCTCATGAGTCT+CGG 0.607492 2_3:+30755907 Msa0287660:CDS
AATTTCTCTCAAAAGTGGAT+GGG 0.608979 2_3:+30755333 Msa0287660:CDS
AACCATTGATGGCAATGGAA+TGG 0.612706 2_3:+30754504 Msa0287660:CDS
AAAAGTGGATGGGATCAGTA+CGG 0.626304 2_3:+30755343 Msa0287660:CDS
TTTGGTACTGAAATGTCTGG+TGG 0.627310 2_3:+30755445 Msa0287660:CDS
GAAAGGCATATGTTTGTGAA+GGG 0.628625 2_3:-30755751 None:intergenic
GGGTTACCAAGTTCTTGACA+AGG 0.644208 2_3:-30755862 None:intergenic
CGAGGGAAAGATGTTCCTGA+CGG 0.645144 2_3:+30754318 Msa0287660:CDS
ATTGAGTTCAGAACAACCAA+AGG 0.651524 2_3:+30755520 Msa0287660:CDS
AGAACAACCAAAGGAAGAGG+TGG 0.657978 2_3:+30755529 Msa0287660:CDS
ACTGGATTGGCGTAAGTGGT+TGG 0.658298 2_3:+30755969 Msa0287660:three_prime_UTR
AAGTCATTTGCTGATAAGGG+TGG 0.660065 2_3:+30753611 Msa0287660:CDS
CAACGAGATGAGGACGACTG+TGG 0.660908 2_3:-30754561 None:intergenic
TTATTTACCTGCAATAAACA+GGG 0.669198 2_3:-30754654 None:intergenic
TTTACCTGCAATAAACAGGG+TGG 0.674542 2_3:-30754651 None:intergenic
GCAGTATAAGGGGATTCTGG+AGG 0.680237 2_3:-30754793 None:intergenic
TCCAATATAGAGACACTGTG+TGG 0.732684 2_3:-30753521 None:intergenic
CCAGTAAGCCAGTTTCCTGG+TGG 0.733343 2_3:-30753650 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCATTTAATTTTTACC+AGG + chr2_3:30754472-30754491 Msa0287660:intron 15.0%
!! ATGATATAATTGAATATACT+CGG - chr2_3:30755106-30755125 None:intergenic 15.0%
!!! TCATTTTTCAAATAATTACT+AGG + chr2_3:30755122-30755141 Msa0287660:intron 15.0%
!!! CATTTTTCAAATAATTACTA+GGG + chr2_3:30755123-30755142 Msa0287660:intron 15.0%
!!! TTGCTTTGTTTTTCATTTTA+AGG + chr2_3:30752764-30752783 Msa0287660:intron 20.0%
!!! TGCTTTGTTTTTCATTTTAA+GGG + chr2_3:30752765-30752784 Msa0287660:intron 20.0%
!!! TTTTTGTGTTTTGTTCATAT+GGG + chr2_3:30752837-30752856 Msa0287660:intron 20.0%
!! TCATACATAAAATTTGAACA+TGG - chr2_3:30752863-30752882 None:intergenic 20.0%
!! ATCAATATATCAGATCAAAA+TGG - chr2_3:30752966-30752985 None:intergenic 20.0%
!! CACTTCAACAAAATATTATA+AGG - chr2_3:30753062-30753081 None:intergenic 20.0%
!! ATCTTTGAATGTATTGAAAT+TGG + chr2_3:30753829-30753848 Msa0287660:intron 20.0%
!! TCTTTGAATGTATTGAAATT+GGG + chr2_3:30753830-30753849 Msa0287660:intron 20.0%
!!! AATTATATCATCTGATTTTG+TGG + chr2_3:30754585-30754604 Msa0287660:CDS 20.0%
!! TTCTTCTTTGATACTTAATT+TGG + chr2_3:30754688-30754707 Msa0287660:intron 20.0%
!! TTACCATCTCAAATAATTAT+CGG - chr2_3:30755008-30755027 None:intergenic 20.0%
!!! ATGAACAACTTGTTTTATTT+TGG - chr2_3:30756126-30756145 None:intergenic 20.0%
!!! ATTCATGTGTAATGAAATTT+TGG + chr2_3:30756233-30756252 Msa0287660:three_prime_UTR 20.0%
!!! TTTGTTACTTGTTTTTGTGT+TGG + chr2_3:30752574-30752593 Msa0287660:five_prime_UTR 25.0%
!!! TCTCTTCAAGTTTTGATTTT+TGG + chr2_3:30752788-30752807 Msa0287660:intron 25.0%
!!! TTCAAGTTTTGATTTTTGGT+TGG + chr2_3:30752792-30752811 Msa0287660:intron 25.0%
!!! GTTTTTGTGTTTTGTTCATA+TGG + chr2_3:30752836-30752855 Msa0287660:intron 25.0%
!!! ATGTATGAGATTTGTTCTTT+TGG + chr2_3:30752875-30752894 Msa0287660:intron 25.0%
!!! TGTATGAGATTTGTTCTTTT+GGG + chr2_3:30752876-30752895 Msa0287660:intron 25.0%
!!! GTTTTTTTGTTCCTTTTGTT+TGG + chr2_3:30752898-30752917 Msa0287660:intron 25.0%
!!! TTTCTATGTCGTTTTAAATC+TGG + chr2_3:30753359-30753378 Msa0287660:intron 25.0%
!!! TTCTATGTCGTTTTAAATCT+GGG + chr2_3:30753360-30753379 Msa0287660:intron 25.0%
! ACTAACAAAATTCTTACTCA+GGG - chr2_3:30753863-30753882 None:intergenic 25.0%
!! CCATGAGTAAAAAATCATTT+TGG - chr2_3:30754018-30754037 None:intergenic 25.0%
!!! CCAAAATGATTTTTTACTCA+TGG + chr2_3:30754015-30754034 Msa0287660:intron 25.0%
! AATTGTGTATTGTTCCTATT+TGG + chr2_3:30754075-30754094 Msa0287660:intron 25.0%
! GCTATATTATTATAGCGTAT+CGG + chr2_3:30754131-30754150 Msa0287660:intron 25.0%
!! TAATTTTTACCAGGCAATAA+TGG + chr2_3:30754481-30754500 Msa0287660:intron 25.0%
! TTATTTACCTGCAATAAACA+GGG - chr2_3:30754657-30754676 None:intergenic 25.0%
! ATTATTTACCTGCAATAAAC+AGG - chr2_3:30754658-30754677 None:intergenic 25.0%
! TAATTTGGCAGACAAAATTA+AGG + chr2_3:30754703-30754722 Msa0287660:intron 25.0%
! AATTTGGCAGACAAAATTAA+GGG + chr2_3:30754704-30754723 Msa0287660:intron 25.0%
! CTTTAATATGTTTACTAACC+TGG - chr2_3:30754829-30754848 None:intergenic 25.0%
! ATACCGATAATTATTTGAGA+TGG + chr2_3:30755002-30755021 Msa0287660:intron 25.0%
!! TGAGAAAGTACATATAAGAA+GGG + chr2_3:30755387-30755406 Msa0287660:CDS 25.0%
!! AACATTTTCAACTCAAATAG+TGG + chr2_3:30755496-30755515 Msa0287660:CDS 25.0%
! ATAACATTGAAGGATATAAC+TGG + chr2_3:30755682-30755701 Msa0287660:CDS 25.0%
! TAGACAAGGTTATATTTGAA+AGG - chr2_3:30755771-30755790 None:intergenic 25.0%
! TTATGAGCAAGAATCAAATT+TGG - chr2_3:30756027-30756046 None:intergenic 25.0%
! ATTGAAATCTAAGGAATGAA+AGG - chr2_3:30756165-30756184 None:intergenic 25.0%
! TATGCAAGAATTGAAATCTA+AGG - chr2_3:30756174-30756193 None:intergenic 25.0%
! ATTCTTGCATATTCCAAAAT+AGG + chr2_3:30756183-30756202 Msa0287660:three_prime_UTR 25.0%
!! GTACAAATAATGACCTATTT+TGG - chr2_3:30756199-30756218 None:intergenic 25.0%
! GTTTAAGGTGAAAACTCAAA+AGG - chr2_3:30752722-30752741 None:intergenic 30.0%
CTTAAACTAGTTCCAAATCT+GGG + chr2_3:30752735-30752754 Msa0287660:intron 30.0%
TGATTAACAACAATCACCAT+TGG - chr2_3:30752934-30752953 None:intergenic 30.0%
GCAAAAACAATGAAAGAACT+AGG - chr2_3:30753127-30753146 None:intergenic 30.0%
AATTCACTTCAAATTGACAG+AGG - chr2_3:30753218-30753237 None:intergenic 30.0%
TGTATGTGTTAATGCTTCAT+AGG + chr2_3:30753325-30753344 Msa0287660:intron 30.0%
AATGCTTCATAGGTTATGTT+TGG + chr2_3:30753335-30753354 Msa0287660:intron 30.0%
TAAACCAATTAATCACCAGA+AGG - chr2_3:30753393-30753412 None:intergenic 30.0%
AACATCTCCATAAACATTCA+CGG - chr2_3:30753465-30753484 None:intergenic 30.0%
! ATGTCGTTTGAATCCTAAAT+TGG + chr2_3:30753490-30753509 Msa0287660:CDS 30.0%
AGTGTCTCTATATTGGAATT+TGG + chr2_3:30753527-30753546 Msa0287660:CDS 30.0%
TGAGATAGAAAATTGCATTC+TGG - chr2_3:30753592-30753611 None:intergenic 30.0%
AATCAAATTTCAGGAGTTAC+TGG - chr2_3:30753771-30753790 None:intergenic 30.0%
GACGAAACTAATCAAATTTC+AGG - chr2_3:30753780-30753799 None:intergenic 30.0%
CACTAACAAAATTCTTACTC+AGG - chr2_3:30753864-30753883 None:intergenic 30.0%
! CTGAGTAAGAATTTTGTTAG+TGG + chr2_3:30753862-30753881 Msa0287660:intron 30.0%
TGAAATTTCATAAACATCCC+TGG - chr2_3:30753952-30753971 None:intergenic 30.0%
! AAAATCATTTTGGACCTTGA+AGG - chr2_3:30754008-30754027 None:intergenic 30.0%
! GACAACATTTTGTACCAAAT+AGG - chr2_3:30754092-30754111 None:intergenic 30.0%
TGGTACAAAATGTTGTCAAA+TGG + chr2_3:30754095-30754114 Msa0287660:intron 30.0%
TACAAAATGTTGTCAAATGG+CGG + chr2_3:30754098-30754117 Msa0287660:intron 30.0%
TTTCATGTGAAACCAATTTG+AGG + chr2_3:30754221-30754240 Msa0287660:intron 30.0%
TTCATGTGAAACCAATTTGA+GGG + chr2_3:30754222-30754241 Msa0287660:intron 30.0%
TCAATAACATTCCAATGAGA+TGG - chr2_3:30754279-30754298 None:intergenic 30.0%
ATTGAAGCTTTACCTTCTTA+TGG + chr2_3:30754294-30754313 Msa0287660:CDS 30.0%
AGATACAAGAGCTTGATAAA+TGG + chr2_3:30754342-30754361 Msa0287660:CDS 30.0%
GATAGAAGCAAGAACAAATT+TGG - chr2_3:30754413-30754432 None:intergenic 30.0%
! TCTTGCTTCTATCAAGTTTT+TGG + chr2_3:30754420-30754439 Msa0287660:intron 30.0%
GATATAATTTCAACGAGATG+AGG - chr2_3:30754574-30754593 None:intergenic 30.0%
GTAAGCTATTGACATTTGAA+AGG - chr2_3:30755205-30755224 None:intergenic 30.0%
GAAGATTGTTATGTTTCCAT+TGG + chr2_3:30755301-30755320 Msa0287660:CDS 30.0%
AATTTCTCTCAAAAGTGGAT+GGG + chr2_3:30755333-30755352 Msa0287660:CDS 30.0%
CTTATATGTACTTTCTCACT+TGG - chr2_3:30755385-30755404 None:intergenic 30.0%
! GTGAGAAAGTACATATAAGA+AGG + chr2_3:30755386-30755405 Msa0287660:CDS 30.0%
AAATGTTAACATGCTCTATC+AGG - chr2_3:30755483-30755502 None:intergenic 30.0%
TGCTTTATCACACATAGAAA+TGG + chr2_3:30755567-30755586 Msa0287660:CDS 30.0%
TATACAGCAATTTCAGCTAA+AGG + chr2_3:30755598-30755617 Msa0287660:CDS 30.0%
ATTTCAGCTAAAGGTAATTC+TGG + chr2_3:30755607-30755626 Msa0287660:CDS 30.0%
TTTGGATCAAATTTGTCATC+AGG - chr2_3:30755640-30755659 None:intergenic 30.0%
AATGTTATGTGATGCAAAAG+TGG - chr2_3:30755670-30755689 None:intergenic 30.0%
TTTGCATCACATAACATTGA+AGG + chr2_3:30755672-30755691 Msa0287660:CDS 30.0%
ATTCCGTTTCTTCAAGTAAA+TGG + chr2_3:30755794-30755813 Msa0287660:CDS 30.0%
TTCCGTTTCTTCAAGTAAAT+GGG + chr2_3:30755795-30755814 Msa0287660:CDS 30.0%
TTCCCATTTACTTGAAGAAA+CGG - chr2_3:30755800-30755819 None:intergenic 30.0%
ATGACGAAGAAGAATTTGAA+GGG - chr2_3:30755885-30755904 None:intergenic 30.0%
ATAAACTGTTCTCAAAACAC+TGG + chr2_3:30755951-30755970 Msa0287660:exon 30.0%
AGAATCAAATTTGGTATCCA+AGG - chr2_3:30756018-30756037 None:intergenic 30.0%
TCATTTGCCAATTGAGAATA+GGG + chr2_3:30756090-30756109 Msa0287660:three_prime_UTR 30.0%
!! CATTTTGAGTCCTTTTGTAA+AGG - chr2_3:30756264-30756283 None:intergenic 30.0%
! CCAGATTTGGAACTAGTTTA+AGG - chr2_3:30752737-30752756 None:intergenic 35.0%
CCTTAAACTAGTTCCAAATC+TGG + chr2_3:30752734-30752753 Msa0287660:intron 35.0%
AAGCAATATAGTCCCAGATT+TGG - chr2_3:30752750-30752769 None:intergenic 35.0%
GCATATACAAGCCAAACAAA+AGG - chr2_3:30752912-30752931 None:intergenic 35.0%
GAAGTGATTCTCTCATTGAT+TGG + chr2_3:30753076-30753095 Msa0287660:intron 35.0%
CTTTCCTTCTGGTGATTAAT+TGG + chr2_3:30753386-30753405 Msa0287660:intron 35.0%
! TGGTTTATGTGACCTTTTTC+AGG + chr2_3:30753406-30753425 Msa0287660:intron 35.0%
!!! TTTATGTGACCTTTTTCAGG+TGG + chr2_3:30753409-30753428 Msa0287660:intron 35.0%
TGAATCCTAAATTGGATCCT+AGG + chr2_3:30753498-30753517 Msa0287660:CDS 35.0%
!! ATATTGGAATTTGGTGCAGT+TGG + chr2_3:30753536-30753555 Msa0287660:CDS 35.0%
! TCTCAAGTCATTTGCTGATA+AGG + chr2_3:30753607-30753626 Msa0287660:CDS 35.0%
! CTCAAGTCATTTGCTGATAA+GGG + chr2_3:30753608-30753627 Msa0287660:CDS 35.0%
! AGCACCTTTTTCCAAAAAGA+GGG - chr2_3:30753702-30753721 None:intergenic 35.0%
!! GAAAAAGGTGCTGTCATTAT+TGG + chr2_3:30753710-30753729 Msa0287660:CDS 35.0%
CTGGTAAAAAATGAAGCAAG+AGG - chr2_3:30753752-30753771 None:intergenic 35.0%
!!! TTTCGTCTTTTTTATGTGCG+AGG + chr2_3:30753793-30753812 Msa0287660:intron 35.0%
! GAATTTTGTTAGTGGTTTCG+TGG + chr2_3:30753870-30753889 Msa0287660:intron 35.0%
ACGAGGATCAAGCTTATTAA+GGG + chr2_3:30753917-30753936 Msa0287660:intron 35.0%
AACCAATTTGAGGGTAATTG+AGG + chr2_3:30754231-30754250 Msa0287660:intron 35.0%
!! AGGAGTGGTTTTTCTTGTTT+AGG + chr2_3:30754251-30754270 Msa0287660:intron 35.0%
! TTGTTTAGGATCCATCTCAT+TGG + chr2_3:30754265-30754284 Msa0287660:intron 35.0%
CTTGATAAATGGTAACCAGT+TGG + chr2_3:30754353-30754372 Msa0287660:CDS 35.0%
TTACTAACCTGGTACTATAC+CGG - chr2_3:30754818-30754837 None:intergenic 35.0%
CTGTTATCCTCATTGTGAAA+TGG + chr2_3:30754857-30754876 Msa0287660:intron 35.0%
CTTCAGATTGAATGAGTGTT+CGG + chr2_3:30754904-30754923 Msa0287660:intron 35.0%
TTGAATGTAAGCACACATGT+TGG + chr2_3:30755033-30755052 Msa0287660:intron 35.0%
AAAGGTTGTCTATGAAGTAC+TGG - chr2_3:30755187-30755206 None:intergenic 35.0%
AGAAATTGCGTCAAAACCAA+TGG - chr2_3:30755320-30755339 None:intergenic 35.0%
CAATTTCTCTCAAAAGTGGA+TGG + chr2_3:30755332-30755351 Msa0287660:CDS 35.0%
GATCAGTACGGCATTAAATA+TGG + chr2_3:30755355-30755374 Msa0287660:CDS 35.0%
! TCATTTGGTACTGAAATGTC+TGG + chr2_3:30755442-30755461 Msa0287660:CDS 35.0%
ATTGAGTTCAGAACAACCAA+AGG + chr2_3:30755520-30755539 Msa0287660:CDS 35.0%
GGAAAGAATATCACAATTGC+TGG + chr2_3:30755703-30755722 Msa0287660:CDS 35.0%
! GAAAGGCATATGTTTGTGAA+GGG - chr2_3:30755754-30755773 None:intergenic 35.0%
! TGAAAGGCATATGTTTGTGA+AGG - chr2_3:30755755-30755774 None:intergenic 35.0%
AGAAACGGAATTTGTAGACA+AGG - chr2_3:30755785-30755804 None:intergenic 35.0%
ATGGGAATGTTCAAATGTCT+CGG + chr2_3:30755813-30755832 Msa0287660:CDS 35.0%
GATGACGAAGAAGAATTTGA+AGG - chr2_3:30755886-30755905 None:intergenic 35.0%
GTCATTTGCCAATTGAGAAT+AGG + chr2_3:30756089-30756108 Msa0287660:three_prime_UTR 35.0%
GAATGTACCCTATTCTCAAT+TGG - chr2_3:30756100-30756119 None:intergenic 35.0%
!! TTTGGTAGTGCCTTTACAAA+AGG + chr2_3:30756251-30756270 Msa0287660:three_prime_UTR 35.0%
TTTCACTGTAAAGCATGTAG+TGG + chr2_3:30756324-30756343 Msa0287660:three_prime_UTR 35.0%
!! TGTAAAGCATGTAGTGGATT+TGG + chr2_3:30756330-30756349 Msa0287660:three_prime_UTR 35.0%
GTACTTACAAGCATCTTCTC+AGG - chr2_3:30752653-30752672 None:intergenic 40.0%
GCTTGTAAGTACGTTTCACT+CGG + chr2_3:30752661-30752680 Msa0287660:intron 40.0%
CTTGTAAGTACGTTTCACTC+GGG + chr2_3:30752662-30752681 Msa0287660:intron 40.0%
!! GTTTGGCTTGTATATGCCAA+TGG + chr2_3:30752915-30752934 Msa0287660:intron 40.0%
! AATCTGGGATACTTTCCTTC+TGG + chr2_3:30753375-30753394 Msa0287660:intron 40.0%
AGCAATGCCGTGAATGTTTA+TGG + chr2_3:30753455-30753474 Msa0287660:CDS 40.0%
TCCAATATAGAGACACTGTG+TGG - chr2_3:30753524-30753543 None:intergenic 40.0%
! AAGTCATTTGCTGATAAGGG+TGG + chr2_3:30753611-30753630 Msa0287660:CDS 40.0%
TTTCCAAAAAGAGGGTGAGA+TGG - chr2_3:30753694-30753713 None:intergenic 40.0%
!! CTCACCCTCTTTTTGGAAAA+AGG + chr2_3:30753695-30753714 Msa0287660:CDS 40.0%
! CAGCACCTTTTTCCAAAAAG+AGG - chr2_3:30753703-30753722 None:intergenic 40.0%
TGCTGTCATTATTGGATCTC+AGG + chr2_3:30753718-30753737 Msa0287660:CDS 40.0%
TGACTAACAAAAGAGACACG+AGG + chr2_3:30753900-30753919 Msa0287660:intron 40.0%
CACGAGGATCAAGCTTATTA+AGG + chr2_3:30753916-30753935 Msa0287660:intron 40.0%
CTCCTCAATTACCCTCAAAT+TGG - chr2_3:30754236-30754255 None:intergenic 40.0%
ATTTGAGGGTAATTGAGGAG+TGG + chr2_3:30754236-30754255 Msa0287660:intron 40.0%
TTATGACCACATCTTCCAAC+TGG - chr2_3:30754371-30754390 None:intergenic 40.0%
TTGGAAGATGTGGTCATAAC+AGG + chr2_3:30754372-30754391 Msa0287660:CDS 40.0%
TCAATGGTTCCATTATTGCC+TGG - chr2_3:30754493-30754512 None:intergenic 40.0%
! GGCAATAATGGAACCATTGA+TGG + chr2_3:30754493-30754512 Msa0287660:intron 40.0%
! AATGGAACCATTGATGGCAA+TGG + chr2_3:30754499-30754518 Msa0287660:CDS 40.0%
! AACCATTGATGGCAATGGAA+TGG + chr2_3:30754504-30754523 Msa0287660:CDS 40.0%
AACCATTCCATTGCCATCAA+TGG - chr2_3:30754509-30754528 None:intergenic 40.0%
! TTGATGGCAATGGAATGGTT+TGG + chr2_3:30754509-30754528 Msa0287660:CDS 40.0%
TTTACCTGCAATAAACAGGG+TGG - chr2_3:30754654-30754673 None:intergenic 40.0%
TACTATACCGGCAGTATAAG+GGG - chr2_3:30754806-30754825 None:intergenic 40.0%
GTACTATACCGGCAGTATAA+GGG - chr2_3:30754807-30754826 None:intergenic 40.0%
! GAAGTGTCAATGCTACATAG+AGG - chr2_3:30754888-30754907 None:intergenic 40.0%
AGTTGGACACAAGCATGTAT+TGG - chr2_3:30754933-30754952 None:intergenic 40.0%
CCAACTATGAGGCAAAAACA+CGG + chr2_3:30754947-30754966 Msa0287660:intron 40.0%
! GTGTCGATGTTAGTCACTTA+TGG - chr2_3:30755079-30755098 None:intergenic 40.0%
GTCAATAGCTTACCAAACCT+TGG + chr2_3:30755212-30755231 Msa0287660:intron 40.0%
GACGCAATTTCTCTCAAAAG+TGG + chr2_3:30755328-30755347 Msa0287660:CDS 40.0%
AAAAGTGGATGGGATCAGTA+CGG + chr2_3:30755343-30755362 Msa0287660:CDS 40.0%
GTTCATCTTCGTGCATTTAC+CGG + chr2_3:30755409-30755428 Msa0287660:CDS 40.0%
ACCAAATGAAATAGCAGAGC+CGG - chr2_3:30755431-30755450 None:intergenic 40.0%
! TTTGGTACTGAAATGTCTGG+TGG + chr2_3:30755445-30755464 Msa0287660:CDS 40.0%
TTCAGAACAACCAAAGGAAG+AGG + chr2_3:30755526-30755545 Msa0287660:CDS 40.0%
TATGTAACCACCTCTTCCTT+TGG - chr2_3:30755539-30755558 None:intergenic 40.0%
!!! TGCAAAAGTGGAAGTGCTTT+TGG - chr2_3:30755658-30755677 None:intergenic 40.0%
TGGGAATGTTCAAATGTCTC+GGG + chr2_3:30755814-30755833 Msa0287660:CDS 40.0%
CCAAGTTCTTGACAAGGTTT+AGG - chr2_3:30755859-30755878 None:intergenic 40.0%
CCTAAACCTTGTCAAGAACT+TGG + chr2_3:30755856-30755875 Msa0287660:CDS 40.0%
TGTTACTACCTCATGAGTCT+CGG + chr2_3:30755907-30755926 Msa0287660:CDS 40.0%
!!! TATTTTGACCGAGACTCATG+AGG - chr2_3:30755918-30755937 None:intergenic 40.0%
CTGTTCTCAAAACACTGGAT+TGG + chr2_3:30755956-30755975 Msa0287660:three_prime_UTR 40.0%
AGAAGAGAAGCAGGAACAAG+AGG - chr2_3:30752525-30752544 None:intergenic 45.0%
GCAAAAGGGTCAGAGACTAA+AGG - chr2_3:30752621-30752640 None:intergenic 45.0%
TCAGGTCAAAGCTGGCAAAA+GGG - chr2_3:30752635-30752654 None:intergenic 45.0%
AGAGCAATGCCACCTGAAAA+AGG - chr2_3:30753421-30753440 None:intergenic 45.0%
TGTGGCCTAGGATCCAATTT+AGG - chr2_3:30753506-30753525 None:intergenic 45.0%
GCCACACAGTGTCTCTATAT+TGG + chr2_3:30753520-30753539 Msa0287660:CDS 45.0%
!! GAATTTGGTGCAGTTGGAGA+TGG + chr2_3:30753542-30753561 Msa0287660:CDS 45.0%
! TAGCCATCTCACCCTCTTTT+TGG + chr2_3:30753688-30753707 Msa0287660:CDS 45.0%
! TATTAAGGGCACACGTATCC+AGG + chr2_3:30753931-30753950 Msa0287660:intron 45.0%
! ATTAAGGGCACACGTATCCA+GGG + chr2_3:30753932-30753951 Msa0287660:intron 45.0%
CTTTACCTTCTTATGGCCGA+GGG + chr2_3:30754301-30754320 Msa0287660:CDS 45.0%
AAGCTCTTGTATCTTCCGTC+AGG - chr2_3:30754336-30754355 None:intergenic 45.0%
TGGTAACCAGTTGGAAGATG+TGG + chr2_3:30754362-30754381 Msa0287660:CDS 45.0%
! ATGGCAATGGAATGGTTTGG+TGG + chr2_3:30754512-30754531 Msa0287660:CDS 45.0%
!! TGGCAATGGAATGGTTTGGT+GGG + chr2_3:30754513-30754532 Msa0287660:CDS 45.0%
ATGAGGACGACTGTGGTTAA+GGG - chr2_3:30754557-30754576 None:intergenic 45.0%
GGTACTATACCGGCAGTATA+AGG - chr2_3:30754808-30754827 None:intergenic 45.0%
TATACTGCCGGTATAGTACC+AGG + chr2_3:30754808-30754827 Msa0287660:CDS 45.0%
! GGCATTGCCATTTCACAATG+AGG - chr2_3:30754867-30754886 None:intergenic 45.0%
CATGCTTGTGTCCAACTATG+AGG + chr2_3:30754936-30754955 Msa0287660:intron 45.0%
!! CCGTGTTTTTGCCTCATAGT+TGG - chr2_3:30754950-30754969 None:intergenic 45.0%
TAGCTTACCAAACCTTGGTG+AGG + chr2_3:30755217-30755236 Msa0287660:intron 45.0%
AGCTTACCAAACCTTGGTGA+GGG + chr2_3:30755218-30755237 Msa0287660:intron 45.0%
!! ACCGGCTCTGCTATTTCATT+TGG + chr2_3:30755427-30755446 Msa0287660:CDS 45.0%
AGAACAACCAAAGGAAGAGG+TGG + chr2_3:30755529-30755548 Msa0287660:CDS 45.0%
ACAATTGCTGGAAGCTTGAG+TGG + chr2_3:30755715-30755734 Msa0287660:CDS 45.0%
! TGTCTCGGGATTTTCAGACT+CGG + chr2_3:30755828-30755847 Msa0287660:CDS 45.0%
GGGTTACCAAGTTCTTGACA+AGG - chr2_3:30755865-30755884 None:intergenic 45.0%
!! AAACACTGGATTGGCGTAAG+TGG + chr2_3:30755965-30755984 Msa0287660:three_prime_UTR 45.0%
! GTGCGAGTGTTGTAAATCCT+TGG + chr2_3:30755998-30756017 Msa0287660:three_prime_UTR 45.0%
GAGAGAGAGAGAAGAGAAGC+AGG - chr2_3:30752534-30752553 None:intergenic 50.0%
CTCAGGTCAAAGCTGGCAAA+AGG - chr2_3:30752636-30752655 None:intergenic 50.0%
GCATCTTCTCAGGTCAAAGC+TGG - chr2_3:30752643-30752662 None:intergenic 50.0%
ACACATACACGTGATCAGCG+CGG - chr2_3:30753314-30753333 None:intergenic 50.0%
ATAGAGACACTGTGTGGCCT+AGG - chr2_3:30753518-30753537 None:intergenic 50.0%
TCTATGTGCCACCAGGAAAC+TGG + chr2_3:30753642-30753661 Msa0287660:CDS 50.0%
CTACCAGTAAGCCAGTTTCC+TGG - chr2_3:30753656-30753675 None:intergenic 50.0%
TGAGACGCTTGTCACCTTCA+AGG + chr2_3:30753991-30754010 Msa0287660:intron 50.0%
GCTTTACCTTCTTATGGCCG+AGG + chr2_3:30754300-30754319 Msa0287660:CDS 50.0%
TCTTTCCCTCGGCCATAAGA+AGG - chr2_3:30754309-30754328 None:intergenic 50.0%
CGTCAGGAACATCTTTCCCT+CGG - chr2_3:30754320-30754339 None:intergenic 50.0%
CGAGGGAAAGATGTTCCTGA+CGG + chr2_3:30754318-30754337 Msa0287660:CDS 50.0%
!! ATGGAATGGTTTGGTGGGAC+TGG + chr2_3:30754518-30754537 Msa0287660:CDS 50.0%
GATGAGGACGACTGTGGTTA+AGG - chr2_3:30754558-30754577 None:intergenic 50.0%
ACAGGGTGGATGCTATATGC+TGG - chr2_3:30754640-30754659 None:intergenic 50.0%
GCATCCACCCTGTTTATTGC+AGG + chr2_3:30754647-30754666 Msa0287660:CDS 50.0%
GCAGTATAAGGGGATTCTGG+AGG - chr2_3:30754796-30754815 None:intergenic 50.0%
CCAGAATCCCCTTATACTGC+CGG + chr2_3:30754796-30754815 Msa0287660:CDS 50.0%
!! ACGATACTGACTCTGACTCG+TGG + chr2_3:30754979-30754998 Msa0287660:intron 50.0%
AAGTGACCCTCACCAAGGTT+TGG - chr2_3:30755227-30755246 None:intergenic 50.0%
TAGCTAAGTGACCCTCACCA+AGG - chr2_3:30755232-30755251 None:intergenic 50.0%
!! ACTGGATTGGCGTAAGTGGT+TGG + chr2_3:30755969-30755988 Msa0287660:three_prime_UTR 50.0%
CCAGTAAGCCAGTTTCCTGG+TGG - chr2_3:30753653-30753672 None:intergenic 55.0%
! CCACCAGGAAACTGGCTTAC+TGG + chr2_3:30753650-30753669 Msa0287660:CDS 55.0%
CAACGAGATGAGGACGACTG+TGG - chr2_3:30754564-30754583 None:intergenic 55.0%
CCGGCAGTATAAGGGGATTC+TGG - chr2_3:30754799-30754818 None:intergenic 55.0%
GCTCAGCTCTATGTGCCACC+AGG + chr2_3:30753635-30753654 Msa0287660:CDS 60.0%
Chromosome Type Strat End Strand Name
chr2_3 gene 30752513 30756441 30752513 ID=Msa0287660;Name=Msa0287660
chr2_3 mRNA 30752513 30756441 30752513 ID=Msa0287660-mRNA-1;Parent=Msa0287660;Name=Msa0287660-mRNA-1;_AED=0.06;_eAED=0.06;_QI=146|1|1|1|1|1|6|490|452
chr2_3 exon 30752513 30752664 30752513 ID=Msa0287660-mRNA-1:exon:10545;Parent=Msa0287660-mRNA-1
chr2_3 exon 30753428 30753739 30753428 ID=Msa0287660-mRNA-1:exon:10546;Parent=Msa0287660-mRNA-1
chr2_3 exon 30754273 30754393 30754273 ID=Msa0287660-mRNA-1:exon:10547;Parent=Msa0287660-mRNA-1
chr2_3 exon 30754494 30754668 30754494 ID=Msa0287660-mRNA-1:exon:10548;Parent=Msa0287660-mRNA-1
chr2_3 exon 30754759 30754829 30754759 ID=Msa0287660-mRNA-1:exon:10549;Parent=Msa0287660-mRNA-1
chr2_3 exon 30755278 30756441 30755278 ID=Msa0287660-mRNA-1:exon:10550;Parent=Msa0287660-mRNA-1
chr2_3 five_prime_UTR 30752513 30752658 30752513 ID=Msa0287660-mRNA-1:five_prime_utr;Parent=Msa0287660-mRNA-1
chr2_3 CDS 30752659 30752664 30752659 ID=Msa0287660-mRNA-1:cds;Parent=Msa0287660-mRNA-1
chr2_3 CDS 30753428 30753739 30753428 ID=Msa0287660-mRNA-1:cds;Parent=Msa0287660-mRNA-1
chr2_3 CDS 30754273 30754393 30754273 ID=Msa0287660-mRNA-1:cds;Parent=Msa0287660-mRNA-1
chr2_3 CDS 30754494 30754668 30754494 ID=Msa0287660-mRNA-1:cds;Parent=Msa0287660-mRNA-1
chr2_3 CDS 30754759 30754829 30754759 ID=Msa0287660-mRNA-1:cds;Parent=Msa0287660-mRNA-1
chr2_3 CDS 30755278 30755951 30755278 ID=Msa0287660-mRNA-1:cds;Parent=Msa0287660-mRNA-1
chr2_3 three_prime_UTR 30755952 30756441 30755952 ID=Msa0287660-mRNA-1:three_prime_utr;Parent=Msa0287660-mRNA-1
Gene Sequence

>Msa0287660

ATGCTTGTGGCATTGCTCTTGCTTCTTGCATTGAGCAATGCCGTGAATGTTTATGGAGATGTTGAGATATGTCGTTTGAATCCTAAATTGGATCCTAGGCCACACAGTGTCTCTATATTGGAATTTGGTGCAGTTGGAGATGGTAAAACACTGAATACAATTGCATTCCAGAATGCAATTTTCTATCTCAAGTCATTTGCTGATAAGGGTGGTGCTCAGCTCTATGTGCCACCAGGAAACTGGCTTACTGGTAGTTTCAATCTTACTAGCCATCTCACCCTCTTTTTGGAAAAAGGTGCTGTCATTATTGGATCTCAGGATCCATCTCATTGGAATGTTATTGAAGCTTTACCTTCTTATGGCCGAGGGAAAGATGTTCCTGACGGAAGATACAAGAGCTTGATAAATGGTAACCAGTTGGAAGATGTGGTCATAACAGGCAATAATGGAACCATTGATGGCAATGGAATGGTTTGGTGGGACTGGTTTAAGTCTCATTCCCTTAACCACAGTCGTCCTCATCTCGTTGAAATTATATCATCTGATTTTGTGGTAGTTTCAAATCTTACATTCTTGAATGCTCCAGCATATAGCATCCACCCTGTTTATTGCAGCAATGTACATATTCAAAACATTTCAATCTCTACTCCTCCAGAATCCCCTTATACTGCCGGTATAGTACCAGATTCTTCTGATAATGTTTGTATAGAAGATTGTTATGTTTCCATTGGTTTTGACGCAATTTCTCTCAAAAGTGGATGGGATCAGTACGGCATTAAATATGGAAGACCAAGTGAGAAAGTACATATAAGAAGGGTTCATCTTCGTGCATTTACCGGCTCTGCTATTTCATTTGGTACTGAAATGTCTGGTGGAATTTCAAAAGTCCTGATAGAGCATGTTAACATTTTCAACTCAAATAGTGGCATTGAGTTCAGAACAACCAAAGGAAGAGGTGGTTACATAAAAGAAATTGCTTTATCACACATAGAAATGGAAAATGTTTATACAGCAATTTCAGCTAAAGGTAATTCTGGTTCTCATCCTGATGACAAATTTGATCCAAAAGCACTTCCACTTTTGCATCACATAACATTGAAGGATATAACTGGAAAGAATATCACAATTGCTGGAAGCTTGAGTGGAATAGAAGAATCACCCTTCACAAACATATGCCTTTCAAATATAACCTTGTCTACAAATTCCGTTTCTTCAAGTAAATGGGAATGTTCAAATGTCTCGGGATTTTCAGACTCGGTGTTGCCTAAACCTTGTCAAGAACTTGGTAACCCTTCAAATTCTTCTTCGTCATCGTGTTACTACCTCATGAGTCTCGGTCAAAATACTGCAGCGATTTAA
Protein sequence

>Msa0287660

MLVALLLLLALSNAVNVYGDVEICRLNPKLDPRPHSVSILEFGAVGDGKTLNTIAFQNAIFYLKSFADKGGAQLYVPPGNWLTGSFNLTSHLTLFLEKGAVIIGSQDPSHWNVIEALPSYGRGKDVPDGRYKSLINGNQLEDVVITGNNGTIDGNGMVWWDWFKSHSLNHSRPHLVEIISSDFVVVSNLTFLNAPAYSIHPVYCSNVHIQNISISTPPESPYTAGIVPDSSDNVCIEDCYVSIGFDAISLKSGWDQYGIKYGRPSEKVHIRRVHLRAFTGSAISFGTEMSGGISKVLIEHVNIFNSNSGIEFRTTKGRGGYIKEIALSHIEMENVYTAISAKGNSGSHPDDKFDPKALPLLHHITLKDITGKNITIAGSLSGIEESPFTNICLSNITLSTNSVSSSKWECSNVSGFSDSVLPKPCQELGNPSNSSSSSCYYLMSLGQNTAAI*