Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407350 | XP_003611914.3 | 97.674 | 344 | 7 | 1 | 6 | 349 | 1 | 343 | 0.0 | 693 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407350 | sp|O64823|MCU2_ARATH | 49.107 | 336 | 143 | 7 | 6 | 328 | 1 | 321 | 1.60e-110 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407350 | G7KAV9 | 97.674 | 344 | 7 | 1 | 6 | 349 | 1 | 343 | 0.0 | 693 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0612590 | Msa1407350 | 0.830840 | 2.341474e-55 | -8.615850e-47 |
| Msa0695650 | Msa1407350 | 0.828203 | 1.024393e-54 | -8.615850e-47 |
| Msa0716150 | Msa1407350 | 0.925186 | 2.579822e-90 | -8.615850e-47 |
| Msa0798790 | Msa1407350 | 0.876768 | 1.073661e-68 | -8.615850e-47 |
| Msa0837320 | Msa1407350 | 0.864229 | 1.412971e-64 | -8.615850e-47 |
| Msa0888980 | Msa1407350 | 0.835515 | 1.604285e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407350 | MtrunA17_Chr8g0373631 | 54.324 | 370 | 130 | 8 | 6 | 348 | 1 | 358 | 9.65e-132 | 380 |
| Msa1407350 | MtrunA17_Chr5g0403551 | 94.444 | 198 | 10 | 1 | 1 | 198 | 19 | 215 | 1.01e-122 | 352 |
| Msa1407350 | MtrunA17_Chr5g0403541 | 98.462 | 130 | 2 | 0 | 220 | 349 | 1 | 130 | 1.38e-93 | 275 |
| Msa1407350 | MtrunA17_Chr1g0154611 | 40.964 | 332 | 183 | 4 | 6 | 330 | 1 | 326 | 1.85e-82 | 254 |
| Msa1407350 | MtrunA17_Chr3g0108861 | 34.247 | 219 | 142 | 1 | 115 | 331 | 99 | 317 | 2.95e-45 | 157 |
| Msa1407350 | MtrunA17_Chr5g0433141 | 33.023 | 215 | 142 | 1 | 115 | 327 | 92 | 306 | 1.71e-41 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1407350 | AT2G23790.1 | 49.107 | 336 | 143 | 7 | 6 | 328 | 1 | 321 | 1.62e-111 | 328 |
| Msa1407350 | AT4G36820.1 | 46.547 | 333 | 152 | 6 | 9 | 329 | 5 | 323 | 2.16e-101 | 302 |
| Msa1407350 | AT5G66650.1 | 45.732 | 328 | 163 | 4 | 6 | 331 | 1 | 315 | 3.32e-96 | 289 |
| Msa1407350 | AT5G42610.1 | 43.019 | 265 | 139 | 4 | 70 | 326 | 21 | 281 | 6.02e-71 | 223 |
| Msa1407350 | AT1G57610.2 | 35.071 | 211 | 132 | 4 | 119 | 325 | 46 | 255 | 4.17e-40 | 143 |
| Msa1407350 | AT1G57610.1 | 35.071 | 211 | 132 | 4 | 119 | 325 | 46 | 255 | 4.17e-40 | 143 |
| Msa1407350 | AT1G09575.1 | 31.858 | 226 | 150 | 3 | 104 | 326 | 36 | 260 | 2.73e-36 | 133 |
| Msa1407350 | AT1G09575.2 | 31.858 | 226 | 150 | 3 | 104 | 326 | 36 | 260 | 2.73e-36 | 133 |
| Msa1407350 | AT1G57610.3 | 34.783 | 161 | 100 | 4 | 119 | 275 | 46 | 205 | 8.41e-24 | 97.8 |
| Msa1407350 | AT1G57610.4 | 34.783 | 161 | 100 | 4 | 119 | 275 | 46 | 205 | 8.41e-24 | 97.8 |
Find 75 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTAATGAGACTCACATTT+TGG | 0.177784 | tig0023284:+45027 | Msa1407350:CDS |
| GAGAAATAATTTACCTGTTC+AGG | 0.213467 | tig0023284:-44002 | None:intergenic |
| CTTGGTTGATCGTGAGCTTT+GGG | 0.230410 | tig0023284:+44971 | Msa1407350:CDS |
| GGGAGGTTTGGGTTTCATTA+TGG | 0.238660 | tig0023284:+44992 | Msa1407350:CDS |
| CGTGAGCTTTGGGGAGGTTT+GGG | 0.254572 | tig0023284:+44981 | Msa1407350:CDS |
| GCGCCATTGTCGCCTGGTTC+TGG | 0.266624 | tig0023284:-43573 | None:intergenic |
| TTGAACCCGGTTTGTTGTTT+TGG | 0.281036 | tig0023284:-43633 | None:intergenic |
| CCTTGGTTGATCGTGAGCTT+TGG | 0.301670 | tig0023284:+44970 | Msa1407350:CDS |
| AAGCAGACTTTGGAGTGTTT+TGG | 0.306984 | tig0023284:-44856 | None:intergenic |
| AAAGAGTTGCGTAACGGTTT+CGG | 0.307406 | tig0023284:+43863 | Msa1407350:CDS |
| TCTGCGGCTGTGATTATTCT+TGG | 0.316398 | tig0023284:+43960 | Msa1407350:CDS |
| TTCTATGAATTTATCATCAA+TGG | 0.344465 | tig0023284:+43428 | Msa1407350:exon |
| TCGTGAGCTTTGGGGAGGTT+TGG | 0.348113 | tig0023284:+44980 | Msa1407350:CDS |
| TTCAGCTTCTCCATCAGGTT+TGG | 0.348246 | tig0023284:-43672 | None:intergenic |
| CAAAACGCCGGCGGAGAAAC+CGG | 0.374721 | tig0023284:+43743 | Msa1407350:CDS |
| GAATCTGATACCTTTATTCC+CGG | 0.374775 | tig0023284:-44885 | None:intergenic |
| GCTTCCTACACCGGGAATAA+AGG | 0.384345 | tig0023284:+44875 | Msa1407350:CDS |
| AAGAAAAGAATACGAAGAAA+TGG | 0.402281 | tig0023284:+44911 | Msa1407350:CDS |
| GGAGCTTACTTGGGATGTAA+TGG | 0.424436 | tig0023284:+45049 | Msa1407350:CDS |
| GGATGTTAAATAGAAGCAAA+TGG | 0.426288 | tig0023284:-45075 | None:intergenic |
| TTGAATGCGCCATTGTCGCC+TGG | 0.428091 | tig0023284:-43579 | None:intergenic |
| TCTAAAAGAAGGTTCTTTCC+CGG | 0.428851 | tig0023284:-45135 | None:intergenic |
| TTCTGGAGAAATATCAGATT+CGG | 0.444493 | tig0023284:-43556 | None:intergenic |
| CTCACGATCAACCAAGGCTT+CGG | 0.444848 | tig0023284:-44964 | None:intergenic |
| GGCATCGCCGGTTTCTCCGC+CGG | 0.448751 | tig0023284:-43750 | None:intergenic |
| TTTGAACCAAAACAACAAAC+CGG | 0.449689 | tig0023284:+43627 | Msa1407350:CDS |
| CCGTCCTCCTTCGGCATCGC+CGG | 0.460693 | tig0023284:-43762 | None:intergenic |
| CCGGTGTAGGAAGCAGACTT+TGG | 0.466737 | tig0023284:-44866 | None:intergenic |
| AGATTCATTCACAAACGAAC+CGG | 0.473805 | tig0023284:+43603 | Msa1407350:CDS |
| TATACATTCTTCCTCAAGAC+CGG | 0.484488 | tig0023284:+45116 | Msa1407350:CDS |
| CAAAATTGTGAAGCTTCATA+AGG | 0.484983 | tig0023284:-45196 | None:intergenic |
| TCAAACATAGGAGGAACATT+GGG | 0.496062 | tig0023284:-45257 | None:intergenic |
| ACATCCATGTACTTCATGAC+TGG | 0.497631 | tig0023284:+45092 | Msa1407350:CDS |
| ACGCTAACACCGTCCTCCTT+CGG | 0.498436 | tig0023284:-43771 | None:intergenic |
| GATGTTAAATAGAAGCAAAT+GGG | 0.503470 | tig0023284:-45074 | None:intergenic |
| GGCTTCGGCTTCTTCGTCGA+TGG | 0.503504 | tig0023284:-44949 | None:intergenic |
| ATCAAACATAGGAGGAACAT+TGG | 0.516274 | tig0023284:-45258 | None:intergenic |
| AGGAATCGTATTCGGTTGGA+TGG | 0.519037 | tig0023284:+43711 | Msa1407350:CDS |
| CGACGAAGAAGCCGAAGCCT+TGG | 0.519418 | tig0023284:+44953 | Msa1407350:CDS |
| ACAATGGTAGGAATCGTATT+CGG | 0.527920 | tig0023284:+43703 | Msa1407350:CDS |
| CCAAAGTCTGCTTCCTACAC+CGG | 0.541189 | tig0023284:+44866 | Msa1407350:CDS |
| GGAGAAACCGGCGATGCCGA+AGG | 0.544555 | tig0023284:+43755 | Msa1407350:CDS |
| TGAAAACAATGGACAATGGT+AGG | 0.544936 | tig0023284:+43691 | Msa1407350:CDS |
| AATTAGAGATGGTGAAATCA+AGG | 0.549065 | tig0023284:+43826 | Msa1407350:CDS |
| TTCAGATGTGAGAGCAGTGG+AGG | 0.554859 | tig0023284:-45282 | None:intergenic |
| GATACCTTTATTCCCGGTGT+AGG | 0.564773 | tig0023284:-44879 | None:intergenic |
| CAAAGTCTGCTTCCTACACC+GGG | 0.576474 | tig0023284:+44867 | Msa1407350:CDS |
| GCTTCATCAACCAAACCTGA+TGG | 0.578108 | tig0023284:+43662 | Msa1407350:CDS |
| TTGAACCAAAACAACAAACC+GGG | 0.578354 | tig0023284:+43628 | Msa1407350:CDS |
| TGGTAGGAATCGTATTCGGT+TGG | 0.582305 | tig0023284:+43707 | Msa1407350:CDS |
| ATACATTCTTCCTCAAGACC+GGG | 0.582455 | tig0023284:+45117 | Msa1407350:CDS |
| TCTCCAGAACCAGGCGACAA+TGG | 0.582804 | tig0023284:+43570 | Msa1407350:CDS |
| CCGGCGATGCCGAAGGAGGA+CGG | 0.583995 | tig0023284:+43762 | Msa1407350:CDS |
| ATGAAGCTCTGATTTGAACC+CGG | 0.585317 | tig0023284:-43646 | None:intergenic |
| TCTGATATTTCTCCAGAACC+AGG | 0.597096 | tig0023284:+43561 | Msa1407350:CDS |
| GAAACCGGCGATGCCGAAGG+AGG | 0.600175 | tig0023284:+43758 | Msa1407350:CDS |
| AGATGTGAAGAAATTGTTGA+AGG | 0.600974 | tig0023284:+43797 | Msa1407350:CDS |
| TTGTTCTGATCATGATCAAG+CGG | 0.601744 | tig0023284:+43911 | Msa1407350:CDS |
| GTTGATCGTGAGCTTTGGGG+AGG | 0.603066 | tig0023284:+44975 | Msa1407350:CDS |
| ATCATCAAAGAGTTGCGTAA+CGG | 0.603173 | tig0023284:+43857 | Msa1407350:CDS |
| GCAGTGGAGGAATCAAACAT+AGG | 0.610101 | tig0023284:-45269 | None:intergenic |
| ATAACCAGTCATGAAGTACA+TGG | 0.615299 | tig0023284:-45096 | None:intergenic |
| AAGGTTCTTTCCCGGTCTTG+AGG | 0.616769 | tig0023284:-45127 | None:intergenic |
| TTAAGAGAACGCTTGCACAA+CGG | 0.623956 | tig0023284:+43454 | Msa1407350:CDS |
| CCAAAGCTCACGATCAACCA+AGG | 0.631926 | tig0023284:-44970 | None:intergenic |
| GAAGATGCTTGATGATTCTG+CGG | 0.634104 | tig0023284:+43944 | Msa1407350:CDS |
| AAGGAGGACGGTGTTAGCGT+CGG | 0.634588 | tig0023284:+43774 | Msa1407350:CDS |
| GTGGAGGAATCAAACATAGG+AGG | 0.637959 | tig0023284:-45266 | None:intergenic |
| GATGGAGAAGCTGAAAACAA+TGG | 0.643760 | tig0023284:+43680 | Msa1407350:CDS |
| TGGATTGATCATCAAAACGC+CGG | 0.650680 | tig0023284:+43731 | Msa1407350:CDS |
| TTGGTTGATCGTGAGCTTTG+GGG | 0.652972 | tig0023284:+44972 | Msa1407350:CDS |
| AAGCTGAAAACAATGGACAA+TGG | 0.660072 | tig0023284:+43687 | Msa1407350:CDS |
| TGTGAAGAAATTGTTGAAGG+TGG | 0.674048 | tig0023284:+43800 | Msa1407350:CDS |
| GAAGGTGGCGCAATTAGAGA+TGG | 0.677578 | tig0023284:+43815 | Msa1407350:CDS |
| ATTGATCATCAAAACGCCGG+CGG | 0.739309 | tig0023284:+43734 | Msa1407350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAATTAATTGAAAGTT+AGG | + | tig0023284:44400-44419 | Msa1407350:intron | 10.0% |
| !! | ATAAAATTAATTGAAAGTTA+GGG | + | tig0023284:44401-44420 | Msa1407350:intron | 10.0% |
| !! | TATAAAATTAATTGAAAGTT+AGG | + | tig0023284:44400-44419 | Msa1407350:intron | 10.0% |
| !! | ATAAAATTAATTGAAAGTTA+GGG | + | tig0023284:44401-44420 | Msa1407350:intron | 10.0% |
| !!! | TGTGTTATTTTTAATTATTG+TGG | + | tig0023284:44075-44094 | Msa1407350:intron | 15.0% |
| !!! | GTGTTATTTTTAATTATTGT+GGG | + | tig0023284:44076-44095 | Msa1407350:intron | 15.0% |
| !! | TAATAATGTAATGTTAATGA+TGG | + | tig0023284:44113-44132 | Msa1407350:intron | 15.0% |
| !! | TTATAGTTTATCCATTTATT+TGG | + | tig0023284:44178-44197 | Msa1407350:intron | 15.0% |
| !! | TAAAATTAATTGAAAGTTAG+GGG | + | tig0023284:44402-44421 | Msa1407350:intron | 15.0% |
| !!! | TTTTTTTTCCTATTTACTTT+TGG | - | tig0023284:44790-44809 | None:intergenic | 15.0% |
| !!! | TGTGTTATTTTTAATTATTG+TGG | + | tig0023284:44075-44094 | Msa1407350:intron | 15.0% |
| !!! | GTGTTATTTTTAATTATTGT+GGG | + | tig0023284:44076-44095 | Msa1407350:intron | 15.0% |
| !! | TAATAATGTAATGTTAATGA+TGG | + | tig0023284:44113-44132 | Msa1407350:intron | 15.0% |
| !! | TTATAGTTTATCCATTTATT+TGG | + | tig0023284:44178-44197 | Msa1407350:intron | 15.0% |
| !! | TAAAATTAATTGAAAGTTAG+GGG | + | tig0023284:44402-44421 | Msa1407350:intron | 15.0% |
| !!! | TTTTTTTTCCTATTTACTTT+TGG | - | tig0023284:44790-44809 | None:intergenic | 15.0% |
| !! | TTCTATGAATTTATCATCAA+TGG | + | tig0023284:43428-43447 | Msa1407350:exon | 20.0% |
| !! | ATTATCAGTTTCCAAATAAA+TGG | - | tig0023284:44192-44211 | None:intergenic | 20.0% |
| !! | CCTAGTCTAAAAATAATTAA+GGG | - | tig0023284:44347-44366 | None:intergenic | 20.0% |
| !! | TCCTAGTCTAAAAATAATTA+AGG | - | tig0023284:44348-44367 | None:intergenic | 20.0% |
| !! | AAAATTAATTGAAAGTTAGG+GGG | + | tig0023284:44403-44422 | Msa1407350:intron | 20.0% |
| !! | AAGAAAAACCAAAAGTAAAT+AGG | + | tig0023284:44779-44798 | Msa1407350:intron | 20.0% |
| !! | TTCTATGAATTTATCATCAA+TGG | + | tig0023284:43428-43447 | Msa1407350:exon | 20.0% |
| !! | ATTATCAGTTTCCAAATAAA+TGG | - | tig0023284:44192-44211 | None:intergenic | 20.0% |
| !! | CCTAGTCTAAAAATAATTAA+GGG | - | tig0023284:44347-44366 | None:intergenic | 20.0% |
| !! | TCCTAGTCTAAAAATAATTA+AGG | - | tig0023284:44348-44367 | None:intergenic | 20.0% |
| !! | AAAATTAATTGAAAGTTAGG+GGG | + | tig0023284:44403-44422 | Msa1407350:intron | 20.0% |
| !! | AAGAAAAACCAAAAGTAAAT+AGG | + | tig0023284:44779-44798 | Msa1407350:intron | 20.0% |
| !! | TGTAATGTTAATGATGGAAA+TGG | + | tig0023284:44119-44138 | Msa1407350:intron | 25.0% |
| !!! | CCCTTAATTATTTTTAGACT+AGG | + | tig0023284:44344-44363 | Msa1407350:intron | 25.0% |
| !!! | TTTATTTTCCAATTCTCTCT+TGG | + | tig0023284:44462-44481 | Msa1407350:intron | 25.0% |
| !!! | GATTTTGACAAAAGTTACTT+TGG | + | tig0023284:44611-44630 | Msa1407350:intron | 25.0% |
| !! | CTATAATATATGTCCCTTTT+AGG | + | tig0023284:44707-44726 | Msa1407350:intron | 25.0% |
| !!! | TTACTTTTGGTTTTTCTTCT+AGG | - | tig0023284:44777-44796 | None:intergenic | 25.0% |
| !! | CACAAAATTTTACAGAGTTT+GGG | - | tig0023284:44826-44845 | None:intergenic | 25.0% |
| !! | TCACAAAATTTTACAGAGTT+TGG | - | tig0023284:44827-44846 | None:intergenic | 25.0% |
| !! | TCTGTAAAATTTTGTGATAC+AGG | + | tig0023284:44830-44849 | Msa1407350:intron | 25.0% |
| ! | AAGAAAAGAATACGAAGAAA+TGG | + | tig0023284:44911-44930 | Msa1407350:CDS | 25.0% |
| !! | TATTAATGAGACTCACATTT+TGG | + | tig0023284:45027-45046 | Msa1407350:CDS | 25.0% |
| !! | ATTAATGAGACTCACATTTT+GGG | + | tig0023284:45028-45047 | Msa1407350:CDS | 25.0% |
| ! | GATGTTAAATAGAAGCAAAT+GGG | - | tig0023284:45077-45096 | None:intergenic | 25.0% |
| !! | TGTAATGTTAATGATGGAAA+TGG | + | tig0023284:44119-44138 | Msa1407350:intron | 25.0% |
| !!! | CCCTTAATTATTTTTAGACT+AGG | + | tig0023284:44344-44363 | Msa1407350:intron | 25.0% |
| !!! | TTTATTTTCCAATTCTCTCT+TGG | + | tig0023284:44462-44481 | Msa1407350:intron | 25.0% |
| !!! | GATTTTGACAAAAGTTACTT+TGG | + | tig0023284:44611-44630 | Msa1407350:intron | 25.0% |
| !! | CTATAATATATGTCCCTTTT+AGG | + | tig0023284:44707-44726 | Msa1407350:intron | 25.0% |
| !!! | TTACTTTTGGTTTTTCTTCT+AGG | - | tig0023284:44777-44796 | None:intergenic | 25.0% |
| !! | CACAAAATTTTACAGAGTTT+GGG | - | tig0023284:44826-44845 | None:intergenic | 25.0% |
| !! | TCACAAAATTTTACAGAGTT+TGG | - | tig0023284:44827-44846 | None:intergenic | 25.0% |
| !! | TCTGTAAAATTTTGTGATAC+AGG | + | tig0023284:44830-44849 | Msa1407350:intron | 25.0% |
| ! | AAGAAAAGAATACGAAGAAA+TGG | + | tig0023284:44911-44930 | Msa1407350:CDS | 25.0% |
| !! | TATTAATGAGACTCACATTT+TGG | + | tig0023284:45027-45046 | Msa1407350:CDS | 25.0% |
| !! | ATTAATGAGACTCACATTTT+GGG | + | tig0023284:45028-45047 | Msa1407350:CDS | 25.0% |
| ! | GATGTTAAATAGAAGCAAAT+GGG | - | tig0023284:45077-45096 | None:intergenic | 25.0% |
| ! | GAGATTTTGTGATGAGATTT+TGG | - | tig0023284:43493-43512 | None:intergenic | 30.0% |
| ! | TTCTGGAGAAATATCAGATT+CGG | - | tig0023284:43559-43578 | None:intergenic | 30.0% |
| !!! | TTGTTGTTTTGGTTCAAAAC+CGG | - | tig0023284:43625-43644 | None:intergenic | 30.0% |
| TTTGAACCAAAACAACAAAC+CGG | + | tig0023284:43627-43646 | Msa1407350:CDS | 30.0% | |
| AGATGTGAAGAAATTGTTGA+AGG | + | tig0023284:43797-43816 | Msa1407350:CDS | 30.0% | |
| AATTAGAGATGGTGAAATCA+AGG | + | tig0023284:43826-43845 | Msa1407350:CDS | 30.0% | |
| GAGAAATAATTTACCTGTTC+AGG | - | tig0023284:44005-44024 | None:intergenic | 30.0% | |
| AAATGGTGAAGATCAAAGAT+AGG | + | tig0023284:44136-44155 | Msa1407350:intron | 30.0% | |
| ! | AACAATGTTTCATTTTCCTG+TGG | - | tig0023284:44245-44264 | None:intergenic | 30.0% |
| !! | TGTTTCGAGAAAAGTGTTAA+AGG | + | tig0023284:44264-44283 | Msa1407350:intron | 30.0% |
| CAATGAGTTCGATGAAATTA+TGG | + | tig0023284:44577-44596 | Msa1407350:intron | 30.0% | |
| ! | ACTTTTGTCAAAATCACACT+TGG | - | tig0023284:44606-44625 | None:intergenic | 30.0% |
| ATGTGATTTCGTTAAACTCA+CGG | + | tig0023284:44636-44655 | Msa1407350:intron | 30.0% | |
| TCATCTAAACATACACTTGA+TGG | + | tig0023284:44660-44679 | Msa1407350:intron | 30.0% | |
| CTTCACAACTATACCTAAAA+GGG | - | tig0023284:44723-44742 | None:intergenic | 30.0% | |
| ACTTCACAACTATACCTAAA+AGG | - | tig0023284:44724-44743 | None:intergenic | 30.0% | |
| AGAAATGGAGAAAAAGAAGT+TGG | + | tig0023284:44926-44945 | Msa1407350:CDS | 30.0% | |
| GGATGTTAAATAGAAGCAAA+TGG | - | tig0023284:45078-45097 | None:intergenic | 30.0% | |
| ! | TCGTAAAAACCTCTAAAAGA+AGG | - | tig0023284:45149-45168 | None:intergenic | 30.0% |
| CAAAATTGTGAAGCTTCATA+AGG | - | tig0023284:45199-45218 | None:intergenic | 30.0% | |
| ! | GAGATTTTGTGATGAGATTT+TGG | - | tig0023284:43493-43512 | None:intergenic | 30.0% |
| ! | TTCTGGAGAAATATCAGATT+CGG | - | tig0023284:43559-43578 | None:intergenic | 30.0% |
| !!! | TTGTTGTTTTGGTTCAAAAC+CGG | - | tig0023284:43625-43644 | None:intergenic | 30.0% |
| TTTGAACCAAAACAACAAAC+CGG | + | tig0023284:43627-43646 | Msa1407350:CDS | 30.0% | |
| AGATGTGAAGAAATTGTTGA+AGG | + | tig0023284:43797-43816 | Msa1407350:CDS | 30.0% | |
| AATTAGAGATGGTGAAATCA+AGG | + | tig0023284:43826-43845 | Msa1407350:CDS | 30.0% | |
| GAGAAATAATTTACCTGTTC+AGG | - | tig0023284:44005-44024 | None:intergenic | 30.0% | |
| AAATGGTGAAGATCAAAGAT+AGG | + | tig0023284:44136-44155 | Msa1407350:intron | 30.0% | |
| ! | AACAATGTTTCATTTTCCTG+TGG | - | tig0023284:44245-44264 | None:intergenic | 30.0% |
| !! | TGTTTCGAGAAAAGTGTTAA+AGG | + | tig0023284:44264-44283 | Msa1407350:intron | 30.0% |
| CAATGAGTTCGATGAAATTA+TGG | + | tig0023284:44577-44596 | Msa1407350:intron | 30.0% | |
| ! | ACTTTTGTCAAAATCACACT+TGG | - | tig0023284:44606-44625 | None:intergenic | 30.0% |
| ATGTGATTTCGTTAAACTCA+CGG | + | tig0023284:44636-44655 | Msa1407350:intron | 30.0% | |
| TCATCTAAACATACACTTGA+TGG | + | tig0023284:44660-44679 | Msa1407350:intron | 30.0% | |
| CTTCACAACTATACCTAAAA+GGG | - | tig0023284:44723-44742 | None:intergenic | 30.0% | |
| ACTTCACAACTATACCTAAA+AGG | - | tig0023284:44724-44743 | None:intergenic | 30.0% | |
| AGAAATGGAGAAAAAGAAGT+TGG | + | tig0023284:44926-44945 | Msa1407350:CDS | 30.0% | |
| GGATGTTAAATAGAAGCAAA+TGG | - | tig0023284:45078-45097 | None:intergenic | 30.0% | |
| ! | TCGTAAAAACCTCTAAAAGA+AGG | - | tig0023284:45149-45168 | None:intergenic | 30.0% |
| CAAAATTGTGAAGCTTCATA+AGG | - | tig0023284:45199-45218 | None:intergenic | 30.0% | |
| !!! | TTCGGATTTTGAAACACTGA+CGG | - | tig0023284:43541-43560 | None:intergenic | 35.0% |
| AGATTCATTCACAAACGAAC+CGG | + | tig0023284:43603-43622 | Msa1407350:CDS | 35.0% | |
| TTGAACCAAAACAACAAACC+GGG | + | tig0023284:43628-43647 | Msa1407350:CDS | 35.0% | |
| AAGCTGAAAACAATGGACAA+TGG | + | tig0023284:43687-43706 | Msa1407350:CDS | 35.0% | |
| TGAAAACAATGGACAATGGT+AGG | + | tig0023284:43691-43710 | Msa1407350:CDS | 35.0% | |
| ACAATGGTAGGAATCGTATT+CGG | + | tig0023284:43703-43722 | Msa1407350:CDS | 35.0% | |
| TGTGAAGAAATTGTTGAAGG+TGG | + | tig0023284:43800-43819 | Msa1407350:CDS | 35.0% | |
| ATCATCAAAGAGTTGCGTAA+CGG | + | tig0023284:43857-43876 | Msa1407350:CDS | 35.0% | |
| TTGTTCTGATCATGATCAAG+CGG | + | tig0023284:43911-43930 | Msa1407350:CDS | 35.0% | |
| ! | TGTTTTTCTTAGACCTGAAC+AGG | + | tig0023284:43989-44008 | Msa1407350:CDS | 35.0% |
| !! | ATTATTGTGGGTTGATACAG+AGG | + | tig0023284:44088-44107 | Msa1407350:intron | 35.0% |
| !! | TTATTGTGGGTTGATACAGA+GGG | + | tig0023284:44089-44108 | Msa1407350:intron | 35.0% |
| !!! | TTCTCGTTTTTTTCTTCCAC+AGG | + | tig0023284:44226-44245 | Msa1407350:intron | 35.0% |
| ATAGTGATGAATGAAAGCTC+TGG | - | tig0023284:44305-44324 | None:intergenic | 35.0% | |
| AATCCTCCTTGATTGAATCT+AGG | - | tig0023284:44430-44449 | None:intergenic | 35.0% | |
| AATCAAGGAGGATTCACAAT+TGG | + | tig0023284:44436-44455 | Msa1407350:intron | 35.0% | |
| ATCAAGGAGGATTCACAATT+GGG | + | tig0023284:44437-44456 | Msa1407350:intron | 35.0% | |
| AAGCTTAACCAAGAGAGAAT+TGG | - | tig0023284:44473-44492 | None:intergenic | 35.0% | |
| ATGCCATTACCTTTAACCTA+AGG | - | tig0023284:44520-44539 | None:intergenic | 35.0% | |
| AAGACGCATGTCTAACTTAA+AGG | - | tig0023284:44549-44568 | None:intergenic | 35.0% | |
| ! | ACATACACTTGATGGTTCAT+AGG | + | tig0023284:44668-44687 | Msa1407350:intron | 35.0% |
| GAATCTGATACCTTTATTCC+CGG | - | tig0023284:44888-44907 | None:intergenic | 35.0% | |
| ATAACCAGTCATGAAGTACA+TGG | - | tig0023284:45099-45118 | None:intergenic | 35.0% | |
| TATACATTCTTCCTCAAGAC+CGG | + | tig0023284:45116-45135 | Msa1407350:CDS | 35.0% | |
| TCTAAAAGAAGGTTCTTTCC+CGG | - | tig0023284:45138-45157 | None:intergenic | 35.0% | |
| TCAAACATAGGAGGAACATT+GGG | - | tig0023284:45260-45279 | None:intergenic | 35.0% | |
| ATCAAACATAGGAGGAACAT+TGG | - | tig0023284:45261-45280 | None:intergenic | 35.0% | |
| !!! | TTCGGATTTTGAAACACTGA+CGG | - | tig0023284:43541-43560 | None:intergenic | 35.0% |
| AGATTCATTCACAAACGAAC+CGG | + | tig0023284:43603-43622 | Msa1407350:CDS | 35.0% | |
| TTGAACCAAAACAACAAACC+GGG | + | tig0023284:43628-43647 | Msa1407350:CDS | 35.0% | |
| AAGCTGAAAACAATGGACAA+TGG | + | tig0023284:43687-43706 | Msa1407350:CDS | 35.0% | |
| TGAAAACAATGGACAATGGT+AGG | + | tig0023284:43691-43710 | Msa1407350:CDS | 35.0% | |
| ACAATGGTAGGAATCGTATT+CGG | + | tig0023284:43703-43722 | Msa1407350:CDS | 35.0% | |
| TGTGAAGAAATTGTTGAAGG+TGG | + | tig0023284:43800-43819 | Msa1407350:CDS | 35.0% | |
| ATCATCAAAGAGTTGCGTAA+CGG | + | tig0023284:43857-43876 | Msa1407350:CDS | 35.0% | |
| TTGTTCTGATCATGATCAAG+CGG | + | tig0023284:43911-43930 | Msa1407350:CDS | 35.0% | |
| ! | TGTTTTTCTTAGACCTGAAC+AGG | + | tig0023284:43989-44008 | Msa1407350:CDS | 35.0% |
| !! | ATTATTGTGGGTTGATACAG+AGG | + | tig0023284:44088-44107 | Msa1407350:intron | 35.0% |
| !! | TTATTGTGGGTTGATACAGA+GGG | + | tig0023284:44089-44108 | Msa1407350:intron | 35.0% |
| !!! | TTCTCGTTTTTTTCTTCCAC+AGG | + | tig0023284:44226-44245 | Msa1407350:intron | 35.0% |
| ATAGTGATGAATGAAAGCTC+TGG | - | tig0023284:44305-44324 | None:intergenic | 35.0% | |
| AATCCTCCTTGATTGAATCT+AGG | - | tig0023284:44430-44449 | None:intergenic | 35.0% | |
| AATCAAGGAGGATTCACAAT+TGG | + | tig0023284:44436-44455 | Msa1407350:intron | 35.0% | |
| ATCAAGGAGGATTCACAATT+GGG | + | tig0023284:44437-44456 | Msa1407350:intron | 35.0% | |
| AAGCTTAACCAAGAGAGAAT+TGG | - | tig0023284:44473-44492 | None:intergenic | 35.0% | |
| ATGCCATTACCTTTAACCTA+AGG | - | tig0023284:44520-44539 | None:intergenic | 35.0% | |
| AAGACGCATGTCTAACTTAA+AGG | - | tig0023284:44549-44568 | None:intergenic | 35.0% | |
| ! | ACATACACTTGATGGTTCAT+AGG | + | tig0023284:44668-44687 | Msa1407350:intron | 35.0% |
| GAATCTGATACCTTTATTCC+CGG | - | tig0023284:44888-44907 | None:intergenic | 35.0% | |
| ATAACCAGTCATGAAGTACA+TGG | - | tig0023284:45099-45118 | None:intergenic | 35.0% | |
| TATACATTCTTCCTCAAGAC+CGG | + | tig0023284:45116-45135 | Msa1407350:CDS | 35.0% | |
| TCTAAAAGAAGGTTCTTTCC+CGG | - | tig0023284:45138-45157 | None:intergenic | 35.0% | |
| TCAAACATAGGAGGAACATT+GGG | - | tig0023284:45260-45279 | None:intergenic | 35.0% | |
| ATCAAACATAGGAGGAACAT+TGG | - | tig0023284:45261-45280 | None:intergenic | 35.0% | |
| TTAAGAGAACGCTTGCACAA+CGG | + | tig0023284:43454-43473 | Msa1407350:CDS | 40.0% | |
| TCTGATATTTCTCCAGAACC+AGG | + | tig0023284:43561-43580 | Msa1407350:CDS | 40.0% | |
| !!! | TTGAACCCGGTTTGTTGTTT+TGG | - | tig0023284:43636-43655 | None:intergenic | 40.0% |
| ! | ATGAAGCTCTGATTTGAACC+CGG | - | tig0023284:43649-43668 | None:intergenic | 40.0% |
| ! | TTGTTTTCAGCTTCTCCATC+AGG | - | tig0023284:43680-43699 | None:intergenic | 40.0% |
| GATGGAGAAGCTGAAAACAA+TGG | + | tig0023284:43680-43699 | Msa1407350:CDS | 40.0% | |
| TGGATTGATCATCAAAACGC+CGG | + | tig0023284:43731-43750 | Msa1407350:CDS | 40.0% | |
| AAAGAGTTGCGTAACGGTTT+CGG | + | tig0023284:43863-43882 | Msa1407350:CDS | 40.0% | |
| ! | GAAGATGCTTGATGATTCTG+CGG | + | tig0023284:43944-43963 | Msa1407350:CDS | 40.0% |
| !! | TATTGTGGGTTGATACAGAG+GGG | + | tig0023284:44090-44109 | Msa1407350:intron | 40.0% |
| ! | TGATGAATGAAAGCTCTGGT+GGG | - | tig0023284:44301-44320 | None:intergenic | 40.0% |
| GTGCCTTAGGTTAAAGGTAA+TGG | + | tig0023284:44514-44533 | Msa1407350:intron | 40.0% | |
| !!! | AAGCAGACTTTGGAGTGTTT+TGG | - | tig0023284:44859-44878 | None:intergenic | 40.0% |
| !! | TCACATTTTGGGAGCTTACT+TGG | + | tig0023284:45039-45058 | Msa1407350:CDS | 40.0% |
| !! | CACATTTTGGGAGCTTACTT+GGG | + | tig0023284:45040-45059 | Msa1407350:CDS | 40.0% |
| ACATCCATGTACTTCATGAC+TGG | + | tig0023284:45092-45111 | Msa1407350:CDS | 40.0% | |
| ATACATTCTTCCTCAAGACC+GGG | + | tig0023284:45117-45136 | Msa1407350:CDS | 40.0% | |
| ! | GGGAAAGAACCTTCTTTTAG+AGG | + | tig0023284:45137-45156 | Msa1407350:CDS | 40.0% |
| ! | ATTTTCAGATGTGAGAGCAG+TGG | - | tig0023284:45288-45307 | None:intergenic | 40.0% |
| TTAAGAGAACGCTTGCACAA+CGG | + | tig0023284:43454-43473 | Msa1407350:CDS | 40.0% | |
| TCTGATATTTCTCCAGAACC+AGG | + | tig0023284:43561-43580 | Msa1407350:CDS | 40.0% | |
| !!! | TTGAACCCGGTTTGTTGTTT+TGG | - | tig0023284:43636-43655 | None:intergenic | 40.0% |
| ! | ATGAAGCTCTGATTTGAACC+CGG | - | tig0023284:43649-43668 | None:intergenic | 40.0% |
| ! | TTGTTTTCAGCTTCTCCATC+AGG | - | tig0023284:43680-43699 | None:intergenic | 40.0% |
| GATGGAGAAGCTGAAAACAA+TGG | + | tig0023284:43680-43699 | Msa1407350:CDS | 40.0% | |
| TGGATTGATCATCAAAACGC+CGG | + | tig0023284:43731-43750 | Msa1407350:CDS | 40.0% | |
| AAAGAGTTGCGTAACGGTTT+CGG | + | tig0023284:43863-43882 | Msa1407350:CDS | 40.0% | |
| ! | GAAGATGCTTGATGATTCTG+CGG | + | tig0023284:43944-43963 | Msa1407350:CDS | 40.0% |
| !! | TATTGTGGGTTGATACAGAG+GGG | + | tig0023284:44090-44109 | Msa1407350:intron | 40.0% |
| ! | TGATGAATGAAAGCTCTGGT+GGG | - | tig0023284:44301-44320 | None:intergenic | 40.0% |
| GTGCCTTAGGTTAAAGGTAA+TGG | + | tig0023284:44514-44533 | Msa1407350:intron | 40.0% | |
| !!! | AAGCAGACTTTGGAGTGTTT+TGG | - | tig0023284:44859-44878 | None:intergenic | 40.0% |
| !! | TCACATTTTGGGAGCTTACT+TGG | + | tig0023284:45039-45058 | Msa1407350:CDS | 40.0% |
| !! | CACATTTTGGGAGCTTACTT+GGG | + | tig0023284:45040-45059 | Msa1407350:CDS | 40.0% |
| ACATCCATGTACTTCATGAC+TGG | + | tig0023284:45092-45111 | Msa1407350:CDS | 40.0% | |
| ATACATTCTTCCTCAAGACC+GGG | + | tig0023284:45117-45136 | Msa1407350:CDS | 40.0% | |
| ! | GGGAAAGAACCTTCTTTTAG+AGG | + | tig0023284:45137-45156 | Msa1407350:CDS | 40.0% |
| ! | ATTTTCAGATGTGAGAGCAG+TGG | - | tig0023284:45288-45307 | None:intergenic | 40.0% |
| !!! | GGATTTTGAAACACTGACGG+AGG | - | tig0023284:43538-43557 | None:intergenic | 45.0% |
| GCTTCATCAACCAAACCTGA+TGG | + | tig0023284:43662-43681 | Msa1407350:CDS | 45.0% | |
| TTCAGCTTCTCCATCAGGTT+TGG | - | tig0023284:43675-43694 | None:intergenic | 45.0% | |
| TGGTAGGAATCGTATTCGGT+TGG | + | tig0023284:43707-43726 | Msa1407350:CDS | 45.0% | |
| AGGAATCGTATTCGGTTGGA+TGG | + | tig0023284:43711-43730 | Msa1407350:CDS | 45.0% | |
| ATTGATCATCAAAACGCCGG+CGG | + | tig0023284:43734-43753 | Msa1407350:CDS | 45.0% | |
| TCTGCGGCTGTGATTATTCT+TGG | + | tig0023284:43960-43979 | Msa1407350:CDS | 45.0% | |
| ! | GTGATGAATGAAAGCTCTGG+TGG | - | tig0023284:44302-44321 | None:intergenic | 45.0% |
| GGTCCTAGATTCAATCAAGG+AGG | + | tig0023284:44424-44443 | Msa1407350:intron | 45.0% | |
| TATACGTTGTCGTGTGCCTT+AGG | + | tig0023284:44501-44520 | Msa1407350:intron | 45.0% | |
| TGTCGTGTGCCTTAGGTTAA+AGG | + | tig0023284:44508-44527 | Msa1407350:intron | 45.0% | |
| GATACCTTTATTCCCGGTGT+AGG | - | tig0023284:44882-44901 | None:intergenic | 45.0% | |
| CTTGGTTGATCGTGAGCTTT+GGG | + | tig0023284:44971-44990 | Msa1407350:CDS | 45.0% | |
| TTGGTTGATCGTGAGCTTTG+GGG | + | tig0023284:44972-44991 | Msa1407350:CDS | 45.0% | |
| ! | GGGAGGTTTGGGTTTCATTA+TGG | + | tig0023284:44992-45011 | Msa1407350:CDS | 45.0% |
| GGAGCTTACTTGGGATGTAA+TGG | + | tig0023284:45049-45068 | Msa1407350:CDS | 45.0% | |
| GTGGAGGAATCAAACATAGG+AGG | - | tig0023284:45269-45288 | None:intergenic | 45.0% | |
| GCAGTGGAGGAATCAAACAT+AGG | - | tig0023284:45272-45291 | None:intergenic | 45.0% | |
| !!! | GGATTTTGAAACACTGACGG+AGG | - | tig0023284:43538-43557 | None:intergenic | 45.0% |
| GCTTCATCAACCAAACCTGA+TGG | + | tig0023284:43662-43681 | Msa1407350:CDS | 45.0% | |
| TTCAGCTTCTCCATCAGGTT+TGG | - | tig0023284:43675-43694 | None:intergenic | 45.0% | |
| TGGTAGGAATCGTATTCGGT+TGG | + | tig0023284:43707-43726 | Msa1407350:CDS | 45.0% | |
| AGGAATCGTATTCGGTTGGA+TGG | + | tig0023284:43711-43730 | Msa1407350:CDS | 45.0% | |
| ATTGATCATCAAAACGCCGG+CGG | + | tig0023284:43734-43753 | Msa1407350:CDS | 45.0% | |
| TCTGCGGCTGTGATTATTCT+TGG | + | tig0023284:43960-43979 | Msa1407350:CDS | 45.0% | |
| ! | GTGATGAATGAAAGCTCTGG+TGG | - | tig0023284:44302-44321 | None:intergenic | 45.0% |
| GGTCCTAGATTCAATCAAGG+AGG | + | tig0023284:44424-44443 | Msa1407350:intron | 45.0% | |
| TATACGTTGTCGTGTGCCTT+AGG | + | tig0023284:44501-44520 | Msa1407350:intron | 45.0% | |
| TGTCGTGTGCCTTAGGTTAA+AGG | + | tig0023284:44508-44527 | Msa1407350:intron | 45.0% | |
| GATACCTTTATTCCCGGTGT+AGG | - | tig0023284:44882-44901 | None:intergenic | 45.0% | |
| CTTGGTTGATCGTGAGCTTT+GGG | + | tig0023284:44971-44990 | Msa1407350:CDS | 45.0% | |
| TTGGTTGATCGTGAGCTTTG+GGG | + | tig0023284:44972-44991 | Msa1407350:CDS | 45.0% | |
| ! | GGGAGGTTTGGGTTTCATTA+TGG | + | tig0023284:44992-45011 | Msa1407350:CDS | 45.0% |
| GGAGCTTACTTGGGATGTAA+TGG | + | tig0023284:45049-45068 | Msa1407350:CDS | 45.0% | |
| GTGGAGGAATCAAACATAGG+AGG | - | tig0023284:45269-45288 | None:intergenic | 45.0% | |
| GCAGTGGAGGAATCAAACAT+AGG | - | tig0023284:45272-45291 | None:intergenic | 45.0% | |
| GAAGGTGGCGCAATTAGAGA+TGG | + | tig0023284:43815-43834 | Msa1407350:CDS | 50.0% | |
| GGGGGTCCTAGATTCAATCA+AGG | + | tig0023284:44421-44440 | Msa1407350:intron | 50.0% | |
| CCAAAGTCTGCTTCCTACAC+CGG | + | tig0023284:44866-44885 | Msa1407350:CDS | 50.0% | |
| CAAAGTCTGCTTCCTACACC+GGG | + | tig0023284:44867-44886 | Msa1407350:CDS | 50.0% | |
| GCTTCCTACACCGGGAATAA+AGG | + | tig0023284:44875-44894 | Msa1407350:CDS | 50.0% | |
| CTCACGATCAACCAAGGCTT+CGG | - | tig0023284:44967-44986 | None:intergenic | 50.0% | |
| CCAAAGCTCACGATCAACCA+AGG | - | tig0023284:44973-44992 | None:intergenic | 50.0% | |
| CCTTGGTTGATCGTGAGCTT+TGG | + | tig0023284:44970-44989 | Msa1407350:CDS | 50.0% | |
| AAGGTTCTTTCCCGGTCTTG+AGG | - | tig0023284:45130-45149 | None:intergenic | 50.0% | |
| TTCAGATGTGAGAGCAGTGG+AGG | - | tig0023284:45285-45304 | None:intergenic | 50.0% | |
| GAAGGTGGCGCAATTAGAGA+TGG | + | tig0023284:43815-43834 | Msa1407350:CDS | 50.0% | |
| GGGGGTCCTAGATTCAATCA+AGG | + | tig0023284:44421-44440 | Msa1407350:intron | 50.0% | |
| CCAAAGTCTGCTTCCTACAC+CGG | + | tig0023284:44866-44885 | Msa1407350:CDS | 50.0% | |
| CAAAGTCTGCTTCCTACACC+GGG | + | tig0023284:44867-44886 | Msa1407350:CDS | 50.0% | |
| GCTTCCTACACCGGGAATAA+AGG | + | tig0023284:44875-44894 | Msa1407350:CDS | 50.0% | |
| CTCACGATCAACCAAGGCTT+CGG | - | tig0023284:44967-44986 | None:intergenic | 50.0% | |
| CCAAAGCTCACGATCAACCA+AGG | - | tig0023284:44973-44992 | None:intergenic | 50.0% | |
| CCTTGGTTGATCGTGAGCTT+TGG | + | tig0023284:44970-44989 | Msa1407350:CDS | 50.0% | |
| AAGGTTCTTTCCCGGTCTTG+AGG | - | tig0023284:45130-45149 | None:intergenic | 50.0% | |
| TTCAGATGTGAGAGCAGTGG+AGG | - | tig0023284:45285-45304 | None:intergenic | 50.0% | |
| TCTCCAGAACCAGGCGACAA+TGG | + | tig0023284:43570-43589 | Msa1407350:CDS | 55.0% | |
| TTGAATGCGCCATTGTCGCC+TGG | - | tig0023284:43582-43601 | None:intergenic | 55.0% | |
| ACGCTAACACCGTCCTCCTT+CGG | - | tig0023284:43774-43793 | None:intergenic | 55.0% | |
| ! | AAGGAGGACGGTGTTAGCGT+CGG | + | tig0023284:43774-43793 | Msa1407350:CDS | 55.0% |
| CCGGTGTAGGAAGCAGACTT+TGG | - | tig0023284:44869-44888 | None:intergenic | 55.0% | |
| !! | GTTGATCGTGAGCTTTGGGG+AGG | + | tig0023284:44975-44994 | Msa1407350:CDS | 55.0% |
| !! | TCGTGAGCTTTGGGGAGGTT+TGG | + | tig0023284:44980-44999 | Msa1407350:CDS | 55.0% |
| !! | CGTGAGCTTTGGGGAGGTTT+GGG | + | tig0023284:44981-45000 | Msa1407350:CDS | 55.0% |
| TCTCCAGAACCAGGCGACAA+TGG | + | tig0023284:43570-43589 | Msa1407350:CDS | 55.0% | |
| TTGAATGCGCCATTGTCGCC+TGG | - | tig0023284:43582-43601 | None:intergenic | 55.0% | |
| ACGCTAACACCGTCCTCCTT+CGG | - | tig0023284:43774-43793 | None:intergenic | 55.0% | |
| ! | AAGGAGGACGGTGTTAGCGT+CGG | + | tig0023284:43774-43793 | Msa1407350:CDS | 55.0% |
| CCGGTGTAGGAAGCAGACTT+TGG | - | tig0023284:44869-44888 | None:intergenic | 55.0% | |
| !! | GTTGATCGTGAGCTTTGGGG+AGG | + | tig0023284:44975-44994 | Msa1407350:CDS | 55.0% |
| !! | TCGTGAGCTTTGGGGAGGTT+TGG | + | tig0023284:44980-44999 | Msa1407350:CDS | 55.0% |
| !! | CGTGAGCTTTGGGGAGGTTT+GGG | + | tig0023284:44981-45000 | Msa1407350:CDS | 55.0% |
| CAAAACGCCGGCGGAGAAAC+CGG | + | tig0023284:43743-43762 | Msa1407350:CDS | 60.0% | |
| GGCTTCGGCTTCTTCGTCGA+TGG | - | tig0023284:44952-44971 | None:intergenic | 60.0% | |
| CGACGAAGAAGCCGAAGCCT+TGG | + | tig0023284:44953-44972 | Msa1407350:CDS | 60.0% | |
| CAAAACGCCGGCGGAGAAAC+CGG | + | tig0023284:43743-43762 | Msa1407350:CDS | 60.0% | |
| GGCTTCGGCTTCTTCGTCGA+TGG | - | tig0023284:44952-44971 | None:intergenic | 60.0% | |
| CGACGAAGAAGCCGAAGCCT+TGG | + | tig0023284:44953-44972 | Msa1407350:CDS | 60.0% | |
| GCGCCATTGTCGCCTGGTTC+TGG | - | tig0023284:43576-43595 | None:intergenic | 65.0% | |
| GGAGAAACCGGCGATGCCGA+AGG | + | tig0023284:43755-43774 | Msa1407350:CDS | 65.0% | |
| GAAACCGGCGATGCCGAAGG+AGG | + | tig0023284:43758-43777 | Msa1407350:CDS | 65.0% | |
| GCGCCATTGTCGCCTGGTTC+TGG | - | tig0023284:43576-43595 | None:intergenic | 65.0% | |
| GGAGAAACCGGCGATGCCGA+AGG | + | tig0023284:43755-43774 | Msa1407350:CDS | 65.0% | |
| GAAACCGGCGATGCCGAAGG+AGG | + | tig0023284:43758-43777 | Msa1407350:CDS | 65.0% | |
| !! | GGCATCGCCGGTTTCTCCGC+CGG | - | tig0023284:43753-43772 | None:intergenic | 70.0% |
| CCGTCCTCCTTCGGCATCGC+CGG | - | tig0023284:43765-43784 | None:intergenic | 70.0% | |
| CCGGCGATGCCGAAGGAGGA+CGG | + | tig0023284:43762-43781 | Msa1407350:CDS | 70.0% | |
| !! | GGCATCGCCGGTTTCTCCGC+CGG | - | tig0023284:43753-43772 | None:intergenic | 70.0% |
| CCGTCCTCCTTCGGCATCGC+CGG | - | tig0023284:43765-43784 | None:intergenic | 70.0% | |
| CCGGCGATGCCGAAGGAGGA+CGG | + | tig0023284:43762-43781 | Msa1407350:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023284 | gene | 43388 | 45322 | 43388 | ID=Msa1407350;Name=Msa1407350 |
| tig0023284 | mRNA | 43388 | 45322 | 43388 | ID=Msa1407350-mRNA-1;Parent=Msa1407350;Name=Msa1407350-mRNA-1;_AED=0.06;_eAED=0.06;_QI=44|0|0.5|1|1|1|2|0|349 |
| tig0023284 | exon | 43388 | 44010 | 43388 | ID=Msa1407350-mRNA-1:exon:25027;Parent=Msa1407350-mRNA-1 |
| tig0023284 | exon | 44852 | 45322 | 44852 | ID=Msa1407350-mRNA-1:exon:25028;Parent=Msa1407350-mRNA-1 |
| tig0023284 | five_prime_UTR | 43388 | 43431 | 43388 | ID=Msa1407350-mRNA-1:five_prime_utr;Parent=Msa1407350-mRNA-1 |
| tig0023284 | CDS | 43432 | 44010 | 43432 | ID=Msa1407350-mRNA-1:cds;Parent=Msa1407350-mRNA-1 |
| tig0023284 | CDS | 44852 | 45322 | 44852 | ID=Msa1407350-mRNA-1:cds;Parent=Msa1407350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
