Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798790 | XP_003611914.3 | 97.674 | 344 | 7 | 1 | 6 | 349 | 1 | 343 | 0.0 | 693 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798790 | sp|O64823|MCU2_ARATH | 49.107 | 336 | 143 | 7 | 6 | 328 | 1 | 321 | 1.60e-110 | 328 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798790 | G7KAV9 | 97.674 | 344 | 7 | 1 | 6 | 349 | 1 | 343 | 0.0 | 693 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0092220 | Msa0798790 | 0.805789 | 1.126731e-49 | -8.615850e-47 |
| Msa0612590 | Msa0798790 | 0.860621 | 1.817689e-63 | -8.615850e-47 |
| Msa0653230 | Msa0798790 | 0.824850 | 6.456365e-54 | -8.615850e-47 |
| Msa0695650 | Msa0798790 | 0.847845 | 8.937725e-60 | -8.615850e-47 |
| Msa0716150 | Msa0798790 | 0.909715 | 4.189626e-82 | -8.615850e-47 |
| Msa0798790 | Msa0837320 | 0.948169 | 1.607716e-106 | -8.615850e-47 |
| Msa0798790 | Msa1070800 | 0.800279 | 1.552648e-48 | -8.615850e-47 |
| Msa0798790 | Msa1158620 | 0.818364 | 2.037364e-52 | -8.615850e-47 |
| Msa0798790 | Msa1407350 | 0.876768 | 1.073661e-68 | -8.615850e-47 |
| Msa0557910 | Msa0798790 | 0.842246 | 2.906411e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798790 | MtrunA17_Chr8g0373631 | 54.324 | 370 | 130 | 8 | 6 | 348 | 1 | 358 | 9.65e-132 | 380 |
| Msa0798790 | MtrunA17_Chr5g0403551 | 94.444 | 198 | 10 | 1 | 1 | 198 | 19 | 215 | 1.01e-122 | 352 |
| Msa0798790 | MtrunA17_Chr5g0403541 | 98.462 | 130 | 2 | 0 | 220 | 349 | 1 | 130 | 1.38e-93 | 275 |
| Msa0798790 | MtrunA17_Chr1g0154611 | 40.964 | 332 | 183 | 4 | 6 | 330 | 1 | 326 | 1.85e-82 | 254 |
| Msa0798790 | MtrunA17_Chr3g0108861 | 34.247 | 219 | 142 | 1 | 115 | 331 | 99 | 317 | 2.95e-45 | 157 |
| Msa0798790 | MtrunA17_Chr5g0433141 | 33.023 | 215 | 142 | 1 | 115 | 327 | 92 | 306 | 1.71e-41 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0798790 | AT2G23790.1 | 49.107 | 336 | 143 | 7 | 6 | 328 | 1 | 321 | 1.62e-111 | 328 |
| Msa0798790 | AT4G36820.1 | 46.547 | 333 | 152 | 6 | 9 | 329 | 5 | 323 | 2.16e-101 | 302 |
| Msa0798790 | AT5G66650.1 | 45.732 | 328 | 163 | 4 | 6 | 331 | 1 | 315 | 3.32e-96 | 289 |
| Msa0798790 | AT5G42610.1 | 43.019 | 265 | 139 | 4 | 70 | 326 | 21 | 281 | 6.02e-71 | 223 |
| Msa0798790 | AT1G57610.2 | 35.071 | 211 | 132 | 4 | 119 | 325 | 46 | 255 | 4.17e-40 | 143 |
| Msa0798790 | AT1G57610.1 | 35.071 | 211 | 132 | 4 | 119 | 325 | 46 | 255 | 4.17e-40 | 143 |
| Msa0798790 | AT1G09575.1 | 31.858 | 226 | 150 | 3 | 104 | 326 | 36 | 260 | 2.73e-36 | 133 |
| Msa0798790 | AT1G09575.2 | 31.858 | 226 | 150 | 3 | 104 | 326 | 36 | 260 | 2.73e-36 | 133 |
| Msa0798790 | AT1G57610.3 | 34.783 | 161 | 100 | 4 | 119 | 275 | 46 | 205 | 8.41e-24 | 97.8 |
| Msa0798790 | AT1G57610.4 | 34.783 | 161 | 100 | 4 | 119 | 275 | 46 | 205 | 8.41e-24 | 97.8 |
Find 77 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGAAATAATTTACCTGTTC+AGG | 0.213467 | 5_3:+11700113 | None:intergenic |
| CTTGGTTGATCGTGAGCTTT+GGG | 0.230410 | 5_3:-11699149 | Msa0798790:CDS |
| GGGAGGTTTGGGTTTCATTA+TGG | 0.238660 | 5_3:-11699128 | Msa0798790:CDS |
| CGTGAGCTTTGGGGAGGTTT+GGG | 0.254572 | 5_3:-11699139 | Msa0798790:CDS |
| TATTAATGAGACTCACCTTT+TGG | 0.277484 | 5_3:-11699093 | Msa0798790:CDS |
| CCTTGGTTGATCGTGAGCTT+TGG | 0.301670 | 5_3:-11699150 | Msa0798790:CDS |
| TTGAACCCGGTTTGTTGTTT+CGG | 0.305567 | 5_3:+11700482 | None:intergenic |
| AAGCAGACTTTGGAGTGTTT+TGG | 0.306984 | 5_3:+11699264 | None:intergenic |
| AAAGAGTTGCGTAACGGTTT+CGG | 0.307406 | 5_3:-11700252 | Msa0798790:CDS |
| TCTGCGGCTGTGATTATTCT+TGG | 0.316398 | 5_3:-11700155 | Msa0798790:CDS |
| TCGCCTGAACCAGGCGATAA+TGG | 0.336873 | 5_3:-11700545 | Msa0798790:CDS |
| TTCTATGAATTTATCATCAA+TGG | 0.344465 | 5_3:-11700687 | Msa0798790:exon |
| TCGTGAGCTTTGGGGAGGTT+TGG | 0.348113 | 5_3:-11699140 | Msa0798790:CDS |
| TTCAGCTTCTCCATCAGGTT+TGG | 0.348246 | 5_3:+11700443 | None:intergenic |
| AAGAAAAGAATATGAAGAAA+TGG | 0.369837 | 5_3:-11699209 | Msa0798790:CDS |
| CAAAACGCCGGCGGAGAAAC+CGG | 0.374721 | 5_3:-11700372 | Msa0798790:CDS |
| GAATCTGATACCTTTATTCC+CGG | 0.374775 | 5_3:+11699235 | None:intergenic |
| GCTTCCTACACCGGGAATAA+AGG | 0.384345 | 5_3:-11699245 | Msa0798790:CDS |
| GCTCCATTATCGCCTGGTTC+AGG | 0.392843 | 5_3:+11700542 | None:intergenic |
| TTGTTGTTTCGGTTCAAAAC+CGG | 0.401588 | 5_3:+11700493 | None:intergenic |
| GGAGCTTACTTGGGATGTAA+TGG | 0.424436 | 5_3:-11699071 | Msa0798790:CDS |
| GGATGTTAAATAGAAGCAAA+TGG | 0.426288 | 5_3:+11699045 | None:intergenic |
| TCTAAAAGAAGGTTCTTTCC+CGG | 0.428851 | 5_3:+11698985 | None:intergenic |
| CTCACGATCAACCAAGGCTT+CGG | 0.444848 | 5_3:+11699156 | None:intergenic |
| GGCATCGCCGGTTTCTCCGC+CGG | 0.448751 | 5_3:+11700365 | None:intergenic |
| CCGTCCTCCTTCGGCATCGC+CGG | 0.460693 | 5_3:+11700353 | None:intergenic |
| TTCAGGCGAAATGTCAGATT+CGG | 0.461196 | 5_3:+11700559 | None:intergenic |
| CCGGTGTAGGAAGCAGACTT+TGG | 0.466737 | 5_3:+11699254 | None:intergenic |
| AGATTCATTCACAAACGAAC+CGG | 0.473805 | 5_3:-11700512 | Msa0798790:CDS |
| TTGAATGCTCCATTATCGCC+TGG | 0.482511 | 5_3:+11700536 | None:intergenic |
| TATACATTCTTCCTCAAGAC+CGG | 0.484488 | 5_3:-11699004 | Msa0798790:CDS |
| CAAAATTGTGAAGCTTCATA+AGG | 0.484983 | 5_3:+11698924 | None:intergenic |
| TCAAACATAGGAGGAACATT+GGG | 0.496062 | 5_3:+11698863 | None:intergenic |
| ACATCCATGTACTTCATGAC+TGG | 0.497631 | 5_3:-11699028 | Msa0798790:CDS |
| ACGCTAACACCGTCCTCCTT+CGG | 0.498436 | 5_3:+11700344 | None:intergenic |
| TTTGAACCGAAACAACAAAC+CGG | 0.498499 | 5_3:-11700488 | Msa0798790:CDS |
| GATGTTAAATAGAAGCAAAT+GGG | 0.503470 | 5_3:+11699046 | None:intergenic |
| CGATGAAGAAGCCGAAGCCT+TGG | 0.509562 | 5_3:-11699167 | Msa0798790:CDS |
| ATCAAACATAGGAGGAACAT+TGG | 0.516274 | 5_3:+11698862 | None:intergenic |
| AGGAATCGTATTCGGTTGGA+TGG | 0.519037 | 5_3:-11700404 | Msa0798790:CDS |
| ACAATGGTAGGAATCGTATT+CGG | 0.527920 | 5_3:-11700412 | Msa0798790:CDS |
| ATCCCAAGTAAGCTCCCAAA+AGG | 0.531115 | 5_3:+11699078 | None:intergenic |
| TCTGACATTTCGCCTGAACC+AGG | 0.534308 | 5_3:-11700554 | Msa0798790:CDS |
| CCAAAGTCTGCTTCCTACAC+CGG | 0.541189 | 5_3:-11699254 | Msa0798790:CDS |
| GGAGAAACCGGCGATGCCGA+AGG | 0.544555 | 5_3:-11700360 | Msa0798790:CDS |
| GGCTTCGGCTTCTTCATCGA+TGG | 0.544645 | 5_3:+11699171 | None:intergenic |
| TGAAAACAATGGACAATGGT+AGG | 0.544936 | 5_3:-11700424 | Msa0798790:CDS |
| AATTAGAGATGGTGAAATCA+AGG | 0.549065 | 5_3:-11700289 | Msa0798790:CDS |
| TTCAGATGTGAGAGCAGTGG+AGG | 0.554859 | 5_3:+11698838 | None:intergenic |
| GATACCTTTATTCCCGGTGT+AGG | 0.564773 | 5_3:+11699241 | None:intergenic |
| TTGAACCGAAACAACAAACC+GGG | 0.566687 | 5_3:-11700487 | Msa0798790:CDS |
| CAAAGTCTGCTTCCTACACC+GGG | 0.576474 | 5_3:-11699253 | Msa0798790:CDS |
| GCTTCATCAACCAAACCTGA+TGG | 0.578108 | 5_3:-11700453 | Msa0798790:CDS |
| TGGTAGGAATCGTATTCGGT+TGG | 0.582305 | 5_3:-11700408 | Msa0798790:CDS |
| ATACATTCTTCCTCAAGACC+GGG | 0.582455 | 5_3:-11699003 | Msa0798790:CDS |
| CCGGCGATGCCGAAGGAGGA+CGG | 0.583995 | 5_3:-11700353 | Msa0798790:CDS |
| ATGAAGCTCTGATTTGAACC+CGG | 0.585317 | 5_3:+11700469 | None:intergenic |
| GAAACCGGCGATGCCGAAGG+AGG | 0.600175 | 5_3:-11700357 | Msa0798790:CDS |
| AGATGTGAAGAAATTGTTGA+AGG | 0.600974 | 5_3:-11700318 | Msa0798790:CDS |
| TTGTTCTGATCATGATCAAG+CGG | 0.601744 | 5_3:-11700204 | Msa0798790:CDS |
| GTTGATCGTGAGCTTTGGGG+AGG | 0.603066 | 5_3:-11699145 | Msa0798790:CDS |
| ATCATCAAAGAGTTGCGTAA+CGG | 0.603173 | 5_3:-11700258 | Msa0798790:CDS |
| GCAGTGGAGGAATCAAACAT+AGG | 0.610101 | 5_3:+11698851 | None:intergenic |
| ATAACCAGTCATGAAGTACA+TGG | 0.615299 | 5_3:+11699024 | None:intergenic |
| AAGGTTCTTTCCCGGTCTTG+AGG | 0.616769 | 5_3:+11698993 | None:intergenic |
| TTAAGAGAACGCTTGCACAA+CGG | 0.623956 | 5_3:-11700661 | Msa0798790:CDS |
| CCAAAGCTCACGATCAACCA+AGG | 0.631926 | 5_3:+11699150 | None:intergenic |
| GAAGATGCTTGATGATTCTG+CGG | 0.634104 | 5_3:-11700171 | Msa0798790:CDS |
| AAGGAGGACGGTGTTAGCGT+CGG | 0.634588 | 5_3:-11700341 | Msa0798790:CDS |
| GTGGAGGAATCAAACATAGG+AGG | 0.637959 | 5_3:+11698854 | None:intergenic |
| GATGGAGAAGCTGAAAACAA+TGG | 0.643760 | 5_3:-11700435 | Msa0798790:CDS |
| TGGATTGATCATCAAAACGC+CGG | 0.650680 | 5_3:-11700384 | Msa0798790:CDS |
| TTGGTTGATCGTGAGCTTTG+GGG | 0.652972 | 5_3:-11699148 | Msa0798790:CDS |
| AAGCTGAAAACAATGGACAA+TGG | 0.660072 | 5_3:-11700428 | Msa0798790:CDS |
| TGTGAAGAAATTGTTGAAGG+TGG | 0.674048 | 5_3:-11700315 | Msa0798790:CDS |
| GAAGGTGGCGCAATTAGAGA+TGG | 0.677578 | 5_3:-11700300 | Msa0798790:CDS |
| ATTGATCATCAAAACGCCGG+CGG | 0.739309 | 5_3:-11700381 | Msa0798790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAATTAATTGAAAGTT+AGG | - | chr5_3:11699832-11699851 | Msa0798790:intron | 10.0% |
| !! | ATAAAATTAATTGAAAGTTA+GGG | - | chr5_3:11699833-11699852 | Msa0798790:intron | 10.0% |
| !! | TATAAAATTAATTGAAAGTT+AGG | - | chr5_3:11699832-11699851 | Msa0798790:intron | 10.0% |
| !! | ATAAAATTAATTGAAAGTTA+GGG | - | chr5_3:11699833-11699852 | Msa0798790:intron | 10.0% |
| !!! | TGTGTTATTTTTAATTATTG+TGG | - | chr5_3:11699507-11699526 | Msa0798790:intron | 15.0% |
| !!! | GTGTTATTTTTAATTATTGT+GGG | - | chr5_3:11699508-11699527 | Msa0798790:intron | 15.0% |
| !! | TAATAATGTAATGTTAATGA+TGG | - | chr5_3:11699545-11699564 | Msa0798790:intron | 15.0% |
| !! | TTATAGTTAATCCATTTATT+TGG | - | chr5_3:11699610-11699629 | Msa0798790:intron | 15.0% |
| !! | TAAAATTAATTGAAAGTTAG+GGG | - | chr5_3:11699834-11699853 | Msa0798790:intron | 15.0% |
| !!! | TTTTTTTTCCTATTTACTTT+TGG | + | chr5_3:11700216-11700235 | None:intergenic | 15.0% |
| !!! | TGTGTTATTTTTAATTATTG+TGG | - | chr5_3:11699507-11699526 | Msa0798790:intron | 15.0% |
| !!! | GTGTTATTTTTAATTATTGT+GGG | - | chr5_3:11699508-11699527 | Msa0798790:intron | 15.0% |
| !! | TAATAATGTAATGTTAATGA+TGG | - | chr5_3:11699545-11699564 | Msa0798790:intron | 15.0% |
| !! | TTATAGTTAATCCATTTATT+TGG | - | chr5_3:11699610-11699629 | Msa0798790:intron | 15.0% |
| !! | TAAAATTAATTGAAAGTTAG+GGG | - | chr5_3:11699834-11699853 | Msa0798790:intron | 15.0% |
| !!! | TTTTTTTTCCTATTTACTTT+TGG | + | chr5_3:11700216-11700235 | None:intergenic | 15.0% |
| !! | TTCTATGAATTTATCATCAA+TGG | - | chr5_3:11698860-11698879 | Msa0798790:CDS | 20.0% |
| !! | ATTATCAGTTTCCAAATAAA+TGG | + | chr5_3:11699624-11699643 | None:intergenic | 20.0% |
| !! | CCTAGTCTAAAAATAATTAA+GGG | + | chr5_3:11699779-11699798 | None:intergenic | 20.0% |
| !! | TCCTAGTCTAAAAATAATTA+AGG | + | chr5_3:11699780-11699799 | None:intergenic | 20.0% |
| !! | AAAATTAATTGAAAGTTAGG+GGG | - | chr5_3:11699835-11699854 | Msa0798790:intron | 20.0% |
| !! | AAGAAAAACCAAAAGTAAAT+AGG | - | chr5_3:11700205-11700224 | Msa0798790:CDS | 20.0% |
| !! | AAGAAAAGAATATGAAGAAA+TGG | - | chr5_3:11700338-11700357 | Msa0798790:CDS | 20.0% |
| !! | TTCTATGAATTTATCATCAA+TGG | - | chr5_3:11698860-11698879 | Msa0798790:CDS | 20.0% |
| !! | ATTATCAGTTTCCAAATAAA+TGG | + | chr5_3:11699624-11699643 | None:intergenic | 20.0% |
| !! | CCTAGTCTAAAAATAATTAA+GGG | + | chr5_3:11699779-11699798 | None:intergenic | 20.0% |
| !! | TCCTAGTCTAAAAATAATTA+AGG | + | chr5_3:11699780-11699799 | None:intergenic | 20.0% |
| !! | AAAATTAATTGAAAGTTAGG+GGG | - | chr5_3:11699835-11699854 | Msa0798790:intron | 20.0% |
| !! | AAGAAAAACCAAAAGTAAAT+AGG | - | chr5_3:11700205-11700224 | Msa0798790:CDS | 20.0% |
| !! | AAGAAAAGAATATGAAGAAA+TGG | - | chr5_3:11700338-11700357 | Msa0798790:CDS | 20.0% |
| !! | TGTAATGTTAATGATGGAAA+TGG | - | chr5_3:11699551-11699570 | Msa0798790:intron | 25.0% |
| !!! | CCCTTAATTATTTTTAGACT+AGG | - | chr5_3:11699776-11699795 | Msa0798790:intron | 25.0% |
| !!! | TTTATTTTCCAATTCTCTCT+TGG | - | chr5_3:11699894-11699913 | Msa0798790:intron | 25.0% |
| ! | AAGTGAGTTTGATGAAATTA+TGG | - | chr5_3:11700009-11700028 | Msa0798790:intron | 25.0% |
| !!! | GATTTTGACAAAAGTTACTT+TGG | - | chr5_3:11700041-11700060 | Msa0798790:intron | 25.0% |
| !! | TTCTAATATATGTCCCTTTT+AGG | - | chr5_3:11700133-11700152 | Msa0798790:CDS | 25.0% |
| !!! | TTACTTTTGGTTTTTCTTCT+AGG | + | chr5_3:11700203-11700222 | None:intergenic | 25.0% |
| !! | CACAAAATTTTACAGAGTTT+GGG | + | chr5_3:11700253-11700272 | None:intergenic | 25.0% |
| !! | TCACAAAATTTTACAGAGTT+TGG | + | chr5_3:11700254-11700273 | None:intergenic | 25.0% |
| !! | TCTGTAAAATTTTGTGATAC+AGG | - | chr5_3:11700257-11700276 | Msa0798790:CDS | 25.0% |
| ! | GATGTTAAATAGAAGCAAAT+GGG | + | chr5_3:11700504-11700523 | None:intergenic | 25.0% |
| !! | TGTAATGTTAATGATGGAAA+TGG | - | chr5_3:11699551-11699570 | Msa0798790:intron | 25.0% |
| !!! | CCCTTAATTATTTTTAGACT+AGG | - | chr5_3:11699776-11699795 | Msa0798790:intron | 25.0% |
| !!! | TTTATTTTCCAATTCTCTCT+TGG | - | chr5_3:11699894-11699913 | Msa0798790:intron | 25.0% |
| ! | AAGTGAGTTTGATGAAATTA+TGG | - | chr5_3:11700009-11700028 | Msa0798790:intron | 25.0% |
| !!! | GATTTTGACAAAAGTTACTT+TGG | - | chr5_3:11700041-11700060 | Msa0798790:intron | 25.0% |
| !! | TTCTAATATATGTCCCTTTT+AGG | - | chr5_3:11700133-11700152 | Msa0798790:CDS | 25.0% |
| !!! | TTACTTTTGGTTTTTCTTCT+AGG | + | chr5_3:11700203-11700222 | None:intergenic | 25.0% |
| !! | CACAAAATTTTACAGAGTTT+GGG | + | chr5_3:11700253-11700272 | None:intergenic | 25.0% |
| !! | TCACAAAATTTTACAGAGTT+TGG | + | chr5_3:11700254-11700273 | None:intergenic | 25.0% |
| !! | TCTGTAAAATTTTGTGATAC+AGG | - | chr5_3:11700257-11700276 | Msa0798790:CDS | 25.0% |
| ! | GATGTTAAATAGAAGCAAAT+GGG | + | chr5_3:11700504-11700523 | None:intergenic | 25.0% |
| ! | GAGATTTTGTGATGAGATTT+TGG | + | chr5_3:11698925-11698944 | None:intergenic | 30.0% |
| AGATGTGAAGAAATTGTTGA+AGG | - | chr5_3:11699229-11699248 | Msa0798790:CDS | 30.0% | |
| AATTAGAGATGGTGAAATCA+AGG | - | chr5_3:11699258-11699277 | Msa0798790:CDS | 30.0% | |
| GAGAAATAATTTACCTGTTC+AGG | + | chr5_3:11699437-11699456 | None:intergenic | 30.0% | |
| AAATGGTGAAGATCAAAGAT+AGG | - | chr5_3:11699568-11699587 | Msa0798790:intron | 30.0% | |
| ! | AAGAATGTTTCATTTTCCTG+TGG | + | chr5_3:11699677-11699696 | None:intergenic | 30.0% |
| !! | TGTTTCGAGAAAAGTGTTAA+AGG | - | chr5_3:11699696-11699715 | Msa0798790:intron | 30.0% |
| TTAAGTTAGACATGTGTCTT+TGG | - | chr5_3:11699981-11700000 | Msa0798790:intron | 30.0% | |
| TCATCTAAACATACACTTGA+TGG | - | chr5_3:11700088-11700107 | Msa0798790:intron | 30.0% | |
| CTTCACAACTATACCTAAAA+GGG | + | chr5_3:11700149-11700168 | None:intergenic | 30.0% | |
| ACTTCACAACTATACCTAAA+AGG | + | chr5_3:11700150-11700169 | None:intergenic | 30.0% | |
| AGAAATGGAGAAAAAGAAGT+TGG | - | chr5_3:11700353-11700372 | Msa0798790:CDS | 30.0% | |
| ! | TATTAATGAGACTCACCTTT+TGG | - | chr5_3:11700454-11700473 | Msa0798790:CDS | 30.0% |
| ! | ATTAATGAGACTCACCTTTT+GGG | - | chr5_3:11700455-11700474 | Msa0798790:CDS | 30.0% |
| GGATGTTAAATAGAAGCAAA+TGG | + | chr5_3:11700505-11700524 | None:intergenic | 30.0% | |
| ! | TCGTAAAAACCTCTAAAAGA+AGG | + | chr5_3:11700576-11700595 | None:intergenic | 30.0% |
| CAAAATTGTGAAGCTTCATA+AGG | + | chr5_3:11700626-11700645 | None:intergenic | 30.0% | |
| ! | GAGATTTTGTGATGAGATTT+TGG | + | chr5_3:11698925-11698944 | None:intergenic | 30.0% |
| AGATGTGAAGAAATTGTTGA+AGG | - | chr5_3:11699229-11699248 | Msa0798790:CDS | 30.0% | |
| AATTAGAGATGGTGAAATCA+AGG | - | chr5_3:11699258-11699277 | Msa0798790:CDS | 30.0% | |
| GAGAAATAATTTACCTGTTC+AGG | + | chr5_3:11699437-11699456 | None:intergenic | 30.0% | |
| AAATGGTGAAGATCAAAGAT+AGG | - | chr5_3:11699568-11699587 | Msa0798790:intron | 30.0% | |
| ! | AAGAATGTTTCATTTTCCTG+TGG | + | chr5_3:11699677-11699696 | None:intergenic | 30.0% |
| !! | TGTTTCGAGAAAAGTGTTAA+AGG | - | chr5_3:11699696-11699715 | Msa0798790:intron | 30.0% |
| TTAAGTTAGACATGTGTCTT+TGG | - | chr5_3:11699981-11700000 | Msa0798790:intron | 30.0% | |
| TCATCTAAACATACACTTGA+TGG | - | chr5_3:11700088-11700107 | Msa0798790:intron | 30.0% | |
| CTTCACAACTATACCTAAAA+GGG | + | chr5_3:11700149-11700168 | None:intergenic | 30.0% | |
| ACTTCACAACTATACCTAAA+AGG | + | chr5_3:11700150-11700169 | None:intergenic | 30.0% | |
| AGAAATGGAGAAAAAGAAGT+TGG | - | chr5_3:11700353-11700372 | Msa0798790:CDS | 30.0% | |
| ! | TATTAATGAGACTCACCTTT+TGG | - | chr5_3:11700454-11700473 | Msa0798790:CDS | 30.0% |
| ! | ATTAATGAGACTCACCTTTT+GGG | - | chr5_3:11700455-11700474 | Msa0798790:CDS | 30.0% |
| GGATGTTAAATAGAAGCAAA+TGG | + | chr5_3:11700505-11700524 | None:intergenic | 30.0% | |
| ! | TCGTAAAAACCTCTAAAAGA+AGG | + | chr5_3:11700576-11700595 | None:intergenic | 30.0% |
| CAAAATTGTGAAGCTTCATA+AGG | + | chr5_3:11700626-11700645 | None:intergenic | 30.0% | |
| !!! | TTCGGATTTTGAAACACTGA+CGG | + | chr5_3:11698973-11698992 | None:intergenic | 35.0% |
| AGATTCATTCACAAACGAAC+CGG | - | chr5_3:11699035-11699054 | Msa0798790:CDS | 35.0% | |
| !! | TTGTTGTTTCGGTTCAAAAC+CGG | + | chr5_3:11699057-11699076 | None:intergenic | 35.0% |
| TTTGAACCGAAACAACAAAC+CGG | - | chr5_3:11699059-11699078 | Msa0798790:CDS | 35.0% | |
| AAGCTGAAAACAATGGACAA+TGG | - | chr5_3:11699119-11699138 | Msa0798790:CDS | 35.0% | |
| TGAAAACAATGGACAATGGT+AGG | - | chr5_3:11699123-11699142 | Msa0798790:CDS | 35.0% | |
| ACAATGGTAGGAATCGTATT+CGG | - | chr5_3:11699135-11699154 | Msa0798790:CDS | 35.0% | |
| TGTGAAGAAATTGTTGAAGG+TGG | - | chr5_3:11699232-11699251 | Msa0798790:CDS | 35.0% | |
| ATCATCAAAGAGTTGCGTAA+CGG | - | chr5_3:11699289-11699308 | Msa0798790:intron | 35.0% | |
| TTGTTCTGATCATGATCAAG+CGG | - | chr5_3:11699343-11699362 | Msa0798790:intron | 35.0% | |
| ! | TGTTTTTCTTAGACCTGAAC+AGG | - | chr5_3:11699421-11699440 | Msa0798790:intron | 35.0% |
| !! | ATTATTGTGGGTTGATACAG+AGG | - | chr5_3:11699520-11699539 | Msa0798790:intron | 35.0% |
| !! | TTATTGTGGGTTGATACAGA+GGG | - | chr5_3:11699521-11699540 | Msa0798790:intron | 35.0% |
| !!! | TTCTCGTTTTTTTCTTCCAC+AGG | - | chr5_3:11699658-11699677 | Msa0798790:intron | 35.0% |
| ATAGTGATGAATGAAAGCTC+TGG | + | chr5_3:11699737-11699756 | None:intergenic | 35.0% | |
| AATCCTCCTTGATTGAATCT+AGG | + | chr5_3:11699862-11699881 | None:intergenic | 35.0% | |
| AATCAAGGAGGATTCACAAT+TGG | - | chr5_3:11699868-11699887 | Msa0798790:intron | 35.0% | |
| ATCAAGGAGGATTCACAATT+GGG | - | chr5_3:11699869-11699888 | Msa0798790:intron | 35.0% | |
| AAGCTTAACCAAGAGAGAAT+TGG | + | chr5_3:11699905-11699924 | None:intergenic | 35.0% | |
| ATGCCATTACCTTTAACCTA+AGG | + | chr5_3:11699952-11699971 | None:intergenic | 35.0% | |
| ! | ACATACACTTGATGGTTCAT+AGG | - | chr5_3:11700096-11700115 | Msa0798790:intron | 35.0% |
| GAATCTGATACCTTTATTCC+CGG | + | chr5_3:11700315-11700334 | None:intergenic | 35.0% | |
| ATAACCAGTCATGAAGTACA+TGG | + | chr5_3:11700526-11700545 | None:intergenic | 35.0% | |
| TATACATTCTTCCTCAAGAC+CGG | - | chr5_3:11700543-11700562 | Msa0798790:CDS | 35.0% | |
| TCTAAAAGAAGGTTCTTTCC+CGG | + | chr5_3:11700565-11700584 | None:intergenic | 35.0% | |
| TCAAACATAGGAGGAACATT+GGG | + | chr5_3:11700687-11700706 | None:intergenic | 35.0% | |
| ATCAAACATAGGAGGAACAT+TGG | + | chr5_3:11700688-11700707 | None:intergenic | 35.0% | |
| !!! | TTCGGATTTTGAAACACTGA+CGG | + | chr5_3:11698973-11698992 | None:intergenic | 35.0% |
| AGATTCATTCACAAACGAAC+CGG | - | chr5_3:11699035-11699054 | Msa0798790:CDS | 35.0% | |
| !! | TTGTTGTTTCGGTTCAAAAC+CGG | + | chr5_3:11699057-11699076 | None:intergenic | 35.0% |
| TTTGAACCGAAACAACAAAC+CGG | - | chr5_3:11699059-11699078 | Msa0798790:CDS | 35.0% | |
| AAGCTGAAAACAATGGACAA+TGG | - | chr5_3:11699119-11699138 | Msa0798790:CDS | 35.0% | |
| TGAAAACAATGGACAATGGT+AGG | - | chr5_3:11699123-11699142 | Msa0798790:CDS | 35.0% | |
| ACAATGGTAGGAATCGTATT+CGG | - | chr5_3:11699135-11699154 | Msa0798790:CDS | 35.0% | |
| TGTGAAGAAATTGTTGAAGG+TGG | - | chr5_3:11699232-11699251 | Msa0798790:CDS | 35.0% | |
| ATCATCAAAGAGTTGCGTAA+CGG | - | chr5_3:11699289-11699308 | Msa0798790:intron | 35.0% | |
| TTGTTCTGATCATGATCAAG+CGG | - | chr5_3:11699343-11699362 | Msa0798790:intron | 35.0% | |
| ! | TGTTTTTCTTAGACCTGAAC+AGG | - | chr5_3:11699421-11699440 | Msa0798790:intron | 35.0% |
| !! | ATTATTGTGGGTTGATACAG+AGG | - | chr5_3:11699520-11699539 | Msa0798790:intron | 35.0% |
| !! | TTATTGTGGGTTGATACAGA+GGG | - | chr5_3:11699521-11699540 | Msa0798790:intron | 35.0% |
| !!! | TTCTCGTTTTTTTCTTCCAC+AGG | - | chr5_3:11699658-11699677 | Msa0798790:intron | 35.0% |
| ATAGTGATGAATGAAAGCTC+TGG | + | chr5_3:11699737-11699756 | None:intergenic | 35.0% | |
| AATCCTCCTTGATTGAATCT+AGG | + | chr5_3:11699862-11699881 | None:intergenic | 35.0% | |
| AATCAAGGAGGATTCACAAT+TGG | - | chr5_3:11699868-11699887 | Msa0798790:intron | 35.0% | |
| ATCAAGGAGGATTCACAATT+GGG | - | chr5_3:11699869-11699888 | Msa0798790:intron | 35.0% | |
| AAGCTTAACCAAGAGAGAAT+TGG | + | chr5_3:11699905-11699924 | None:intergenic | 35.0% | |
| ATGCCATTACCTTTAACCTA+AGG | + | chr5_3:11699952-11699971 | None:intergenic | 35.0% | |
| ! | ACATACACTTGATGGTTCAT+AGG | - | chr5_3:11700096-11700115 | Msa0798790:intron | 35.0% |
| GAATCTGATACCTTTATTCC+CGG | + | chr5_3:11700315-11700334 | None:intergenic | 35.0% | |
| ATAACCAGTCATGAAGTACA+TGG | + | chr5_3:11700526-11700545 | None:intergenic | 35.0% | |
| TATACATTCTTCCTCAAGAC+CGG | - | chr5_3:11700543-11700562 | Msa0798790:CDS | 35.0% | |
| TCTAAAAGAAGGTTCTTTCC+CGG | + | chr5_3:11700565-11700584 | None:intergenic | 35.0% | |
| TCAAACATAGGAGGAACATT+GGG | + | chr5_3:11700687-11700706 | None:intergenic | 35.0% | |
| ATCAAACATAGGAGGAACAT+TGG | + | chr5_3:11700688-11700707 | None:intergenic | 35.0% | |
| TTAAGAGAACGCTTGCACAA+CGG | - | chr5_3:11698886-11698905 | Msa0798790:CDS | 40.0% | |
| TTCAGGCGAAATGTCAGATT+CGG | + | chr5_3:11698991-11699010 | None:intergenic | 40.0% | |
| TTGAACCGAAACAACAAACC+GGG | - | chr5_3:11699060-11699079 | Msa0798790:CDS | 40.0% | |
| !! | TTGAACCCGGTTTGTTGTTT+CGG | + | chr5_3:11699068-11699087 | None:intergenic | 40.0% |
| ! | ATGAAGCTCTGATTTGAACC+CGG | + | chr5_3:11699081-11699100 | None:intergenic | 40.0% |
| ! | TTGTTTTCAGCTTCTCCATC+AGG | + | chr5_3:11699112-11699131 | None:intergenic | 40.0% |
| GATGGAGAAGCTGAAAACAA+TGG | - | chr5_3:11699112-11699131 | Msa0798790:CDS | 40.0% | |
| TGGATTGATCATCAAAACGC+CGG | - | chr5_3:11699163-11699182 | Msa0798790:CDS | 40.0% | |
| AAAGAGTTGCGTAACGGTTT+CGG | - | chr5_3:11699295-11699314 | Msa0798790:intron | 40.0% | |
| ! | GAAGATGCTTGATGATTCTG+CGG | - | chr5_3:11699376-11699395 | Msa0798790:intron | 40.0% |
| !! | TATTGTGGGTTGATACAGAG+GGG | - | chr5_3:11699522-11699541 | Msa0798790:intron | 40.0% |
| ! | TGATGAATGAAAGCTCTGGT+GGG | + | chr5_3:11699733-11699752 | None:intergenic | 40.0% |
| TATACATTGTCGTGTGCCTT+AGG | - | chr5_3:11699933-11699952 | Msa0798790:intron | 40.0% | |
| GTGCCTTAGGTTAAAGGTAA+TGG | - | chr5_3:11699946-11699965 | Msa0798790:intron | 40.0% | |
| !!! | AAGCAGACTTTGGAGTGTTT+TGG | + | chr5_3:11700286-11700305 | None:intergenic | 40.0% |
| ACATCCATGTACTTCATGAC+TGG | - | chr5_3:11700519-11700538 | Msa0798790:CDS | 40.0% | |
| ATACATTCTTCCTCAAGACC+GGG | - | chr5_3:11700544-11700563 | Msa0798790:CDS | 40.0% | |
| ! | GGGAAAGAACCTTCTTTTAG+AGG | - | chr5_3:11700564-11700583 | Msa0798790:CDS | 40.0% |
| ! | ATTTTCAGATGTGAGAGCAG+TGG | + | chr5_3:11700715-11700734 | None:intergenic | 40.0% |
| TTAAGAGAACGCTTGCACAA+CGG | - | chr5_3:11698886-11698905 | Msa0798790:CDS | 40.0% | |
| TTCAGGCGAAATGTCAGATT+CGG | + | chr5_3:11698991-11699010 | None:intergenic | 40.0% | |
| TTGAACCGAAACAACAAACC+GGG | - | chr5_3:11699060-11699079 | Msa0798790:CDS | 40.0% | |
| !! | TTGAACCCGGTTTGTTGTTT+CGG | + | chr5_3:11699068-11699087 | None:intergenic | 40.0% |
| ! | ATGAAGCTCTGATTTGAACC+CGG | + | chr5_3:11699081-11699100 | None:intergenic | 40.0% |
| ! | TTGTTTTCAGCTTCTCCATC+AGG | + | chr5_3:11699112-11699131 | None:intergenic | 40.0% |
| GATGGAGAAGCTGAAAACAA+TGG | - | chr5_3:11699112-11699131 | Msa0798790:CDS | 40.0% | |
| TGGATTGATCATCAAAACGC+CGG | - | chr5_3:11699163-11699182 | Msa0798790:CDS | 40.0% | |
| AAAGAGTTGCGTAACGGTTT+CGG | - | chr5_3:11699295-11699314 | Msa0798790:intron | 40.0% | |
| ! | GAAGATGCTTGATGATTCTG+CGG | - | chr5_3:11699376-11699395 | Msa0798790:intron | 40.0% |
| !! | TATTGTGGGTTGATACAGAG+GGG | - | chr5_3:11699522-11699541 | Msa0798790:intron | 40.0% |
| ! | TGATGAATGAAAGCTCTGGT+GGG | + | chr5_3:11699733-11699752 | None:intergenic | 40.0% |
| TATACATTGTCGTGTGCCTT+AGG | - | chr5_3:11699933-11699952 | Msa0798790:intron | 40.0% | |
| GTGCCTTAGGTTAAAGGTAA+TGG | - | chr5_3:11699946-11699965 | Msa0798790:intron | 40.0% | |
| !!! | AAGCAGACTTTGGAGTGTTT+TGG | + | chr5_3:11700286-11700305 | None:intergenic | 40.0% |
| ACATCCATGTACTTCATGAC+TGG | - | chr5_3:11700519-11700538 | Msa0798790:CDS | 40.0% | |
| ATACATTCTTCCTCAAGACC+GGG | - | chr5_3:11700544-11700563 | Msa0798790:CDS | 40.0% | |
| ! | GGGAAAGAACCTTCTTTTAG+AGG | - | chr5_3:11700564-11700583 | Msa0798790:CDS | 40.0% |
| ! | ATTTTCAGATGTGAGAGCAG+TGG | + | chr5_3:11700715-11700734 | None:intergenic | 40.0% |
| !!! | GGATTTTGAAACACTGACGG+AGG | + | chr5_3:11698970-11698989 | None:intergenic | 45.0% |
| TTGAATGCTCCATTATCGCC+TGG | + | chr5_3:11699014-11699033 | None:intergenic | 45.0% | |
| GCTTCATCAACCAAACCTGA+TGG | - | chr5_3:11699094-11699113 | Msa0798790:CDS | 45.0% | |
| TTCAGCTTCTCCATCAGGTT+TGG | + | chr5_3:11699107-11699126 | None:intergenic | 45.0% | |
| TGGTAGGAATCGTATTCGGT+TGG | - | chr5_3:11699139-11699158 | Msa0798790:CDS | 45.0% | |
| AGGAATCGTATTCGGTTGGA+TGG | - | chr5_3:11699143-11699162 | Msa0798790:CDS | 45.0% | |
| ATTGATCATCAAAACGCCGG+CGG | - | chr5_3:11699166-11699185 | Msa0798790:CDS | 45.0% | |
| TCTGCGGCTGTGATTATTCT+TGG | - | chr5_3:11699392-11699411 | Msa0798790:intron | 45.0% | |
| ! | GTGATGAATGAAAGCTCTGG+TGG | + | chr5_3:11699734-11699753 | None:intergenic | 45.0% |
| GGTCCTAGATTCAATCAAGG+AGG | - | chr5_3:11699856-11699875 | Msa0798790:intron | 45.0% | |
| TGTCGTGTGCCTTAGGTTAA+AGG | - | chr5_3:11699940-11699959 | Msa0798790:intron | 45.0% | |
| GATACCTTTATTCCCGGTGT+AGG | + | chr5_3:11700309-11700328 | None:intergenic | 45.0% | |
| CTTGGTTGATCGTGAGCTTT+GGG | - | chr5_3:11700398-11700417 | Msa0798790:CDS | 45.0% | |
| TTGGTTGATCGTGAGCTTTG+GGG | - | chr5_3:11700399-11700418 | Msa0798790:CDS | 45.0% | |
| ! | GGGAGGTTTGGGTTTCATTA+TGG | - | chr5_3:11700419-11700438 | Msa0798790:CDS | 45.0% |
| !! | TCACCTTTTGGGAGCTTACT+TGG | - | chr5_3:11700466-11700485 | Msa0798790:CDS | 45.0% |
| !! | CACCTTTTGGGAGCTTACTT+GGG | - | chr5_3:11700467-11700486 | Msa0798790:CDS | 45.0% |
| ATCCCAAGTAAGCTCCCAAA+AGG | + | chr5_3:11700472-11700491 | None:intergenic | 45.0% | |
| GGAGCTTACTTGGGATGTAA+TGG | - | chr5_3:11700476-11700495 | Msa0798790:CDS | 45.0% | |
| GTGGAGGAATCAAACATAGG+AGG | + | chr5_3:11700696-11700715 | None:intergenic | 45.0% | |
| GCAGTGGAGGAATCAAACAT+AGG | + | chr5_3:11700699-11700718 | None:intergenic | 45.0% | |
| !!! | GGATTTTGAAACACTGACGG+AGG | + | chr5_3:11698970-11698989 | None:intergenic | 45.0% |
| TTGAATGCTCCATTATCGCC+TGG | + | chr5_3:11699014-11699033 | None:intergenic | 45.0% | |
| GCTTCATCAACCAAACCTGA+TGG | - | chr5_3:11699094-11699113 | Msa0798790:CDS | 45.0% | |
| TTCAGCTTCTCCATCAGGTT+TGG | + | chr5_3:11699107-11699126 | None:intergenic | 45.0% | |
| TGGTAGGAATCGTATTCGGT+TGG | - | chr5_3:11699139-11699158 | Msa0798790:CDS | 45.0% | |
| AGGAATCGTATTCGGTTGGA+TGG | - | chr5_3:11699143-11699162 | Msa0798790:CDS | 45.0% | |
| ATTGATCATCAAAACGCCGG+CGG | - | chr5_3:11699166-11699185 | Msa0798790:CDS | 45.0% | |
| TCTGCGGCTGTGATTATTCT+TGG | - | chr5_3:11699392-11699411 | Msa0798790:intron | 45.0% | |
| ! | GTGATGAATGAAAGCTCTGG+TGG | + | chr5_3:11699734-11699753 | None:intergenic | 45.0% |
| GGTCCTAGATTCAATCAAGG+AGG | - | chr5_3:11699856-11699875 | Msa0798790:intron | 45.0% | |
| TGTCGTGTGCCTTAGGTTAA+AGG | - | chr5_3:11699940-11699959 | Msa0798790:intron | 45.0% | |
| GATACCTTTATTCCCGGTGT+AGG | + | chr5_3:11700309-11700328 | None:intergenic | 45.0% | |
| CTTGGTTGATCGTGAGCTTT+GGG | - | chr5_3:11700398-11700417 | Msa0798790:CDS | 45.0% | |
| TTGGTTGATCGTGAGCTTTG+GGG | - | chr5_3:11700399-11700418 | Msa0798790:CDS | 45.0% | |
| ! | GGGAGGTTTGGGTTTCATTA+TGG | - | chr5_3:11700419-11700438 | Msa0798790:CDS | 45.0% |
| !! | TCACCTTTTGGGAGCTTACT+TGG | - | chr5_3:11700466-11700485 | Msa0798790:CDS | 45.0% |
| !! | CACCTTTTGGGAGCTTACTT+GGG | - | chr5_3:11700467-11700486 | Msa0798790:CDS | 45.0% |
| ATCCCAAGTAAGCTCCCAAA+AGG | + | chr5_3:11700472-11700491 | None:intergenic | 45.0% | |
| GGAGCTTACTTGGGATGTAA+TGG | - | chr5_3:11700476-11700495 | Msa0798790:CDS | 45.0% | |
| GTGGAGGAATCAAACATAGG+AGG | + | chr5_3:11700696-11700715 | None:intergenic | 45.0% | |
| GCAGTGGAGGAATCAAACAT+AGG | + | chr5_3:11700699-11700718 | None:intergenic | 45.0% | |
| TCTGACATTTCGCCTGAACC+AGG | - | chr5_3:11698993-11699012 | Msa0798790:CDS | 50.0% | |
| GAAGGTGGCGCAATTAGAGA+TGG | - | chr5_3:11699247-11699266 | Msa0798790:CDS | 50.0% | |
| GGGGGTCCTAGATTCAATCA+AGG | - | chr5_3:11699853-11699872 | Msa0798790:intron | 50.0% | |
| CCAAAGTCTGCTTCCTACAC+CGG | - | chr5_3:11700293-11700312 | Msa0798790:CDS | 50.0% | |
| CAAAGTCTGCTTCCTACACC+GGG | - | chr5_3:11700294-11700313 | Msa0798790:CDS | 50.0% | |
| GCTTCCTACACCGGGAATAA+AGG | - | chr5_3:11700302-11700321 | Msa0798790:CDS | 50.0% | |
| CTCACGATCAACCAAGGCTT+CGG | + | chr5_3:11700394-11700413 | None:intergenic | 50.0% | |
| CCAAAGCTCACGATCAACCA+AGG | + | chr5_3:11700400-11700419 | None:intergenic | 50.0% | |
| CCTTGGTTGATCGTGAGCTT+TGG | - | chr5_3:11700397-11700416 | Msa0798790:CDS | 50.0% | |
| AAGGTTCTTTCCCGGTCTTG+AGG | + | chr5_3:11700557-11700576 | None:intergenic | 50.0% | |
| TTCAGATGTGAGAGCAGTGG+AGG | + | chr5_3:11700712-11700731 | None:intergenic | 50.0% | |
| TCTGACATTTCGCCTGAACC+AGG | - | chr5_3:11698993-11699012 | Msa0798790:CDS | 50.0% | |
| GAAGGTGGCGCAATTAGAGA+TGG | - | chr5_3:11699247-11699266 | Msa0798790:CDS | 50.0% | |
| GGGGGTCCTAGATTCAATCA+AGG | - | chr5_3:11699853-11699872 | Msa0798790:intron | 50.0% | |
| CCAAAGTCTGCTTCCTACAC+CGG | - | chr5_3:11700293-11700312 | Msa0798790:CDS | 50.0% | |
| CAAAGTCTGCTTCCTACACC+GGG | - | chr5_3:11700294-11700313 | Msa0798790:CDS | 50.0% | |
| GCTTCCTACACCGGGAATAA+AGG | - | chr5_3:11700302-11700321 | Msa0798790:CDS | 50.0% | |
| CTCACGATCAACCAAGGCTT+CGG | + | chr5_3:11700394-11700413 | None:intergenic | 50.0% | |
| CCAAAGCTCACGATCAACCA+AGG | + | chr5_3:11700400-11700419 | None:intergenic | 50.0% | |
| CCTTGGTTGATCGTGAGCTT+TGG | - | chr5_3:11700397-11700416 | Msa0798790:CDS | 50.0% | |
| AAGGTTCTTTCCCGGTCTTG+AGG | + | chr5_3:11700557-11700576 | None:intergenic | 50.0% | |
| TTCAGATGTGAGAGCAGTGG+AGG | + | chr5_3:11700712-11700731 | None:intergenic | 50.0% | |
| TCGCCTGAACCAGGCGATAA+TGG | - | chr5_3:11699002-11699021 | Msa0798790:CDS | 55.0% | |
| GCTCCATTATCGCCTGGTTC+AGG | + | chr5_3:11699008-11699027 | None:intergenic | 55.0% | |
| ACGCTAACACCGTCCTCCTT+CGG | + | chr5_3:11699206-11699225 | None:intergenic | 55.0% | |
| ! | AAGGAGGACGGTGTTAGCGT+CGG | - | chr5_3:11699206-11699225 | Msa0798790:CDS | 55.0% |
| CCGGTGTAGGAAGCAGACTT+TGG | + | chr5_3:11700296-11700315 | None:intergenic | 55.0% | |
| GGCTTCGGCTTCTTCATCGA+TGG | + | chr5_3:11700379-11700398 | None:intergenic | 55.0% | |
| CGATGAAGAAGCCGAAGCCT+TGG | - | chr5_3:11700380-11700399 | Msa0798790:CDS | 55.0% | |
| !! | GTTGATCGTGAGCTTTGGGG+AGG | - | chr5_3:11700402-11700421 | Msa0798790:CDS | 55.0% |
| !! | TCGTGAGCTTTGGGGAGGTT+TGG | - | chr5_3:11700407-11700426 | Msa0798790:CDS | 55.0% |
| !! | CGTGAGCTTTGGGGAGGTTT+GGG | - | chr5_3:11700408-11700427 | Msa0798790:CDS | 55.0% |
| TCGCCTGAACCAGGCGATAA+TGG | - | chr5_3:11699002-11699021 | Msa0798790:CDS | 55.0% | |
| GCTCCATTATCGCCTGGTTC+AGG | + | chr5_3:11699008-11699027 | None:intergenic | 55.0% | |
| ACGCTAACACCGTCCTCCTT+CGG | + | chr5_3:11699206-11699225 | None:intergenic | 55.0% | |
| ! | AAGGAGGACGGTGTTAGCGT+CGG | - | chr5_3:11699206-11699225 | Msa0798790:CDS | 55.0% |
| CCGGTGTAGGAAGCAGACTT+TGG | + | chr5_3:11700296-11700315 | None:intergenic | 55.0% | |
| GGCTTCGGCTTCTTCATCGA+TGG | + | chr5_3:11700379-11700398 | None:intergenic | 55.0% | |
| CGATGAAGAAGCCGAAGCCT+TGG | - | chr5_3:11700380-11700399 | Msa0798790:CDS | 55.0% | |
| !! | GTTGATCGTGAGCTTTGGGG+AGG | - | chr5_3:11700402-11700421 | Msa0798790:CDS | 55.0% |
| !! | TCGTGAGCTTTGGGGAGGTT+TGG | - | chr5_3:11700407-11700426 | Msa0798790:CDS | 55.0% |
| !! | CGTGAGCTTTGGGGAGGTTT+GGG | - | chr5_3:11700408-11700427 | Msa0798790:CDS | 55.0% |
| CAAAACGCCGGCGGAGAAAC+CGG | - | chr5_3:11699175-11699194 | Msa0798790:CDS | 60.0% | |
| CAAAACGCCGGCGGAGAAAC+CGG | - | chr5_3:11699175-11699194 | Msa0798790:CDS | 60.0% | |
| GGAGAAACCGGCGATGCCGA+AGG | - | chr5_3:11699187-11699206 | Msa0798790:CDS | 65.0% | |
| GAAACCGGCGATGCCGAAGG+AGG | - | chr5_3:11699190-11699209 | Msa0798790:CDS | 65.0% | |
| GGAGAAACCGGCGATGCCGA+AGG | - | chr5_3:11699187-11699206 | Msa0798790:CDS | 65.0% | |
| GAAACCGGCGATGCCGAAGG+AGG | - | chr5_3:11699190-11699209 | Msa0798790:CDS | 65.0% | |
| !! | GGCATCGCCGGTTTCTCCGC+CGG | + | chr5_3:11699185-11699204 | None:intergenic | 70.0% |
| CCGTCCTCCTTCGGCATCGC+CGG | + | chr5_3:11699197-11699216 | None:intergenic | 70.0% | |
| CCGGCGATGCCGAAGGAGGA+CGG | - | chr5_3:11699194-11699213 | Msa0798790:CDS | 70.0% | |
| !! | GGCATCGCCGGTTTCTCCGC+CGG | + | chr5_3:11699185-11699204 | None:intergenic | 70.0% |
| CCGTCCTCCTTCGGCATCGC+CGG | + | chr5_3:11699197-11699216 | None:intergenic | 70.0% | |
| CCGGCGATGCCGAAGGAGGA+CGG | - | chr5_3:11699194-11699213 | Msa0798790:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 11698820 | 11700749 | 11698820 | ID=Msa0798790;Name=Msa0798790 |
| chr5_3 | mRNA | 11698820 | 11700749 | 11698820 | ID=Msa0798790-mRNA-1;Parent=Msa0798790;Name=Msa0798790-mRNA-1;_AED=0.06;_eAED=0.06;_QI=44|0|0.5|1|1|1|2|0|349 |
| chr5_3 | exon | 11698820 | 11699290 | 11698820 | ID=Msa0798790-mRNA-1:exon:4844;Parent=Msa0798790-mRNA-1 |
| chr5_3 | exon | 11700127 | 11700749 | 11700127 | ID=Msa0798790-mRNA-1:exon:4843;Parent=Msa0798790-mRNA-1 |
| chr5_3 | five_prime_UTR | 11700706 | 11700749 | 11700706 | ID=Msa0798790-mRNA-1:five_prime_utr;Parent=Msa0798790-mRNA-1 |
| chr5_3 | CDS | 11700127 | 11700705 | 11700127 | ID=Msa0798790-mRNA-1:cds;Parent=Msa0798790-mRNA-1 |
| chr5_3 | CDS | 11698820 | 11699290 | 11698820 | ID=Msa0798790-mRNA-1:cds;Parent=Msa0798790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
