Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409710 | XP_013470478.1 | 98.503 | 334 | 5 | 0 | 1 | 334 | 1 | 334 | 0.0 | 683 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409710 | sp|O80624|MAKR4_ARATH | 48.485 | 330 | 112 | 13 | 6 | 326 | 5 | 285 | 4.82e-60 | 198 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409710 | A0A072VS60 | 98.503 | 334 | 5 | 0 | 1 | 334 | 1 | 334 | 0.0 | 683 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0045620 | Msa1409710 | 0.803036 | 4.221891e-49 | -8.615850e-47 |
| Msa1371800 | Msa1409710 | 0.802247 | 6.140806e-49 | -8.615850e-47 |
| Msa1372030 | Msa1409710 | 0.824981 | 6.009966e-54 | -8.615850e-47 |
| Msa1409710 | Msa1436470 | 0.976440 | 7.892532e-142 | -8.615850e-47 |
| Msa0673940 | Msa1409710 | 0.805096 | 1.574453e-49 | -8.615850e-47 |
| Msa0751720 | Msa1409710 | 0.818337 | 2.066184e-52 | -8.615850e-47 |
| Msa0831820 | Msa1409710 | 0.811569 | 6.557314e-51 | -8.615850e-47 |
| Msa1278030 | Msa1409710 | 0.807255 | 5.527900e-50 | -8.615850e-47 |
| Msa0336520 | Msa1409710 | 0.808159 | 3.552066e-50 | -8.615850e-47 |
| Msa0587180 | Msa1409710 | 0.802301 | 5.987311e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409710 | MtrunA17_Chr1g0212991 | 98.503 | 334 | 5 | 0 | 1 | 334 | 1 | 334 | 0.0 | 683 |
| Msa1409710 | MtrunA17_Chr1g0182011 | 43.333 | 330 | 134 | 13 | 13 | 331 | 16 | 303 | 5.05e-46 | 159 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1409710 | AT2G39370.1 | 48.485 | 330 | 112 | 13 | 6 | 326 | 5 | 285 | 4.90e-61 | 198 |
| Msa1409710 | AT2G37380.1 | 35.777 | 341 | 149 | 10 | 3 | 329 | 8 | 292 | 3.36e-22 | 95.5 |
Find 57 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCTTGAAGCCTTTAATT+TGG | 0.146793 | tig0023536:-36809 | None:intergenic |
| GTTGGAATCAAACTTCTTTC+AGG | 0.146827 | tig0023536:+37078 | Msa1409710:CDS |
| GATAGCTTTGCCTTTGAATT+TGG | 0.163953 | tig0023536:-36975 | None:intergenic |
| TTCTTTAGGTTCCAAATTAA+AGG | 0.205767 | tig0023536:+36798 | Msa1409710:CDS |
| AAACTGAAACAGTCTTCTTT+AGG | 0.271143 | tig0023536:+36784 | Msa1409710:CDS |
| TCTTAGTCCATGACTTCTTC+TGG | 0.278627 | tig0023536:-36762 | None:intergenic |
| CTTGAACAATGGAAGACATT+TGG | 0.293756 | tig0023536:-36414 | None:intergenic |
| TGCCTTTGAATTTGGCCATA+TGG | 0.329386 | tig0023536:-36967 | None:intergenic |
| AAGTCCTGGTTTGGAAAATC+TGG | 0.332844 | tig0023536:+36838 | Msa1409710:CDS |
| TCACTTTCAAACAAATCATA+TGG | 0.358419 | tig0023536:+37147 | Msa1409710:CDS |
| TCATCAAATTCCTCGATATC+TGG | 0.379426 | tig0023536:+37111 | Msa1409710:CDS |
| ATCAGATGGTGAAATATTGC+AGG | 0.390323 | tig0023536:-36650 | None:intergenic |
| GCATATCTCAAGTCCTGGTT+TGG | 0.399275 | tig0023536:+36829 | Msa1409710:CDS |
| TGCAGTGTGCAATTGCTCCT+TGG | 0.412534 | tig0023536:-37236 | None:intergenic |
| TCAACAAAAGTTGCTGATGA+AGG | 0.445650 | tig0023536:+36886 | Msa1409710:CDS |
| TCATCAGCTGGTGAAGTTGT+TGG | 0.457440 | tig0023536:-36445 | None:intergenic |
| AAAGAAAAGAGCAGTGAAGA+TGG | 0.463735 | tig0023536:+37027 | Msa1409710:CDS |
| AAGGCAAAGCTATCAGTCTT+CGG | 0.466088 | tig0023536:+36984 | Msa1409710:CDS |
| GTAAAAGTAGTAGTGGCTAA+TGG | 0.470831 | tig0023536:-36598 | None:intergenic |
| CCTTCCACCTCGGTTACAAA+TGG | 0.472089 | tig0023536:+36501 | Msa1409710:CDS |
| CACAGAAGATCATTCTCTGT+TGG | 0.492725 | tig0023536:+37060 | Msa1409710:CDS |
| AAACTCACCAGCTTCTCAAA+AGG | 0.497441 | tig0023536:+37178 | Msa1409710:CDS |
| AAGGTTCAGTTTCAAAAGCA+AGG | 0.506978 | tig0023536:+36905 | Msa1409710:CDS |
| TGGCTCTTTCTCTTGAACAA+TGG | 0.508604 | tig0023536:-36425 | None:intergenic |
| TCAAATGGTGTGCCGGTGGT+CGG | 0.509798 | tig0023536:-36625 | None:intergenic |
| ATCCATATGGCCAAATTCAA+AGG | 0.520385 | tig0023536:+36965 | Msa1409710:CDS |
| CAACCTCAAAAGGTTTGTGA+GGG | 0.520895 | tig0023536:-36543 | None:intergenic |
| TAACCGAGGTGGAAGGTGAA+GGG | 0.527822 | tig0023536:-36494 | None:intergenic |
| GTAACCGAGGTGGAAGGTGA+AGG | 0.531115 | tig0023536:-36495 | None:intergenic |
| TCAAACTCTCTAGGATGTTG+TGG | 0.534718 | tig0023536:-36388 | None:intergenic |
| CAAGAGCATATCTCAAGTCC+TGG | 0.537010 | tig0023536:+36824 | Msa1409710:CDS |
| GAAATATTGCAGGACTCAAA+TGG | 0.540473 | tig0023536:-36640 | None:intergenic |
| ATTTGGAACTCAAACTCTCT+AGG | 0.552249 | tig0023536:-36397 | None:intergenic |
| TCAACCTCAAAAGGTTTGTG+AGG | 0.554753 | tig0023536:-36544 | None:intergenic |
| TTGAAAACCAGAAGAAGTCA+TGG | 0.561084 | tig0023536:+36755 | Msa1409710:CDS |
| GAGATAGAAAACTCAATCCA+AGG | 0.565645 | tig0023536:+37219 | Msa1409710:CDS |
| TTGTAGAAAAGCTCATCAGC+TGG | 0.575859 | tig0023536:-36457 | None:intergenic |
| AGGTTCAGTTTCAAAAGCAA+GGG | 0.584246 | tig0023536:+36906 | Msa1409710:CDS |
| TCGATGTAATCATCATCTGA+AGG | 0.584817 | tig0023536:-36310 | None:intergenic |
| GTCGAGGTTATAATACTCCT+CGG | 0.586101 | tig0023536:-36701 | None:intergenic |
| AACCGAGGTGGAAGGTGAAG+GGG | 0.586622 | tig0023536:-36493 | None:intergenic |
| CGGCGTTGTAAAAGTAGTAG+TGG | 0.587994 | tig0023536:-36605 | None:intergenic |
| GCAGGACTCAAATGGTGTGC+CGG | 0.600198 | tig0023536:-36632 | None:intergenic |
| CGATGTAATCATCATCTGAA+GGG | 0.601976 | tig0023536:-36309 | None:intergenic |
| ACCGAGGTGGAAGGTGAAGG+GGG | 0.612840 | tig0023536:-36492 | None:intergenic |
| TATCCGTTGTGTGGTAGTCG+AGG | 0.615070 | tig0023536:-36717 | None:intergenic |
| TCTTCGGTTTCTGTCATGAG+AGG | 0.620110 | tig0023536:+37000 | Msa1409710:CDS |
| TACCACACAACGGATACAAG+TGG | 0.625294 | tig0023536:+36724 | Msa1409710:CDS |
| ATCCACTTGTATCCGTTGTG+TGG | 0.626565 | tig0023536:-36726 | None:intergenic |
| CTAACTTGACAAGAATCAGA+TGG | 0.628578 | tig0023536:-36664 | None:intergenic |
| TGACGATGAACCAGATATCG+AGG | 0.629004 | tig0023536:-37121 | None:intergenic |
| AGATGATGATTACATCGACA+TGG | 0.635328 | tig0023536:+36315 | Msa1409710:CDS |
| GGACTCAAATGGTGTGCCGG+TGG | 0.637216 | tig0023536:-36629 | None:intergenic |
| CCATTTGTAACCGAGGTGGA+AGG | 0.639907 | tig0023536:-36501 | None:intergenic |
| TAGTCGAGAACTAAATGCCG+AGG | 0.663489 | tig0023536:+36684 | Msa1409710:CDS |
| TCGACCATTTGTAACCGAGG+TGG | 0.669165 | tig0023536:-36505 | None:intergenic |
| TAACCTCGACTACCACACAA+CGG | 0.724478 | tig0023536:+36714 | Msa1409710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTAAATAAGCATGTTCA+AGG | + | tig0023536:36931-36950 | Msa1409710:CDS | 20.0% |
| !!! | ATTTTAAATAAGCATGTTCA+AGG | + | tig0023536:36931-36950 | Msa1409710:CDS | 20.0% |
| !! | TTCTTTAGGTTCCAAATTAA+AGG | + | tig0023536:36798-36817 | Msa1409710:CDS | 25.0% |
| ! | TCACTTTCAAACAAATCATA+TGG | + | tig0023536:37147-37166 | Msa1409710:CDS | 25.0% |
| !! | TTCTTTAGGTTCCAAATTAA+AGG | + | tig0023536:36798-36817 | Msa1409710:CDS | 25.0% |
| ! | TCACTTTCAAACAAATCATA+TGG | + | tig0023536:37147-37166 | Msa1409710:CDS | 25.0% |
| ! | ATATCCTTTTCAACCTCAAA+AGG | - | tig0023536:36556-36575 | None:intergenic | 30.0% |
| AAACTGAAACAGTCTTCTTT+AGG | + | tig0023536:36784-36803 | Msa1409710:CDS | 30.0% | |
| GGAGCAAATAAAAATCCATA+TGG | + | tig0023536:36952-36971 | Msa1409710:CDS | 30.0% | |
| ! | ATATCCTTTTCAACCTCAAA+AGG | - | tig0023536:36556-36575 | None:intergenic | 30.0% |
| AAACTGAAACAGTCTTCTTT+AGG | + | tig0023536:36784-36803 | Msa1409710:CDS | 30.0% | |
| GGAGCAAATAAAAATCCATA+TGG | + | tig0023536:36952-36971 | Msa1409710:CDS | 30.0% | |
| CGATGTAATCATCATCTGAA+GGG | - | tig0023536:36312-36331 | None:intergenic | 35.0% | |
| TCGATGTAATCATCATCTGA+AGG | - | tig0023536:36313-36332 | None:intergenic | 35.0% | |
| AGATGATGATTACATCGACA+TGG | + | tig0023536:36315-36334 | Msa1409710:CDS | 35.0% | |
| ! | ATTTGGAACTCAAACTCTCT+AGG | - | tig0023536:36400-36419 | None:intergenic | 35.0% |
| CTTGAACAATGGAAGACATT+TGG | - | tig0023536:36417-36436 | None:intergenic | 35.0% | |
| !!! | CAAACCTTTTGAGGTTGAAA+AGG | + | tig0023536:36549-36568 | Msa1409710:CDS | 35.0% |
| GTAAAAGTAGTAGTGGCTAA+TGG | - | tig0023536:36601-36620 | None:intergenic | 35.0% | |
| GAAATATTGCAGGACTCAAA+TGG | - | tig0023536:36643-36662 | None:intergenic | 35.0% | |
| ATCAGATGGTGAAATATTGC+AGG | - | tig0023536:36653-36672 | None:intergenic | 35.0% | |
| CTAACTTGACAAGAATCAGA+TGG | - | tig0023536:36667-36686 | None:intergenic | 35.0% | |
| TTGAAAACCAGAAGAAGTCA+TGG | + | tig0023536:36755-36774 | Msa1409710:CDS | 35.0% | |
| TGCTCTTGAAGCCTTTAATT+TGG | - | tig0023536:36812-36831 | None:intergenic | 35.0% | |
| TCAACAAAAGTTGCTGATGA+AGG | + | tig0023536:36886-36905 | Msa1409710:CDS | 35.0% | |
| AAGGTTCAGTTTCAAAAGCA+AGG | + | tig0023536:36905-36924 | Msa1409710:CDS | 35.0% | |
| AGGTTCAGTTTCAAAAGCAA+GGG | + | tig0023536:36906-36925 | Msa1409710:CDS | 35.0% | |
| ATCCATATGGCCAAATTCAA+AGG | + | tig0023536:36965-36984 | Msa1409710:CDS | 35.0% | |
| ! | GATAGCTTTGCCTTTGAATT+TGG | - | tig0023536:36978-36997 | None:intergenic | 35.0% |
| AAAGAAAAGAGCAGTGAAGA+TGG | + | tig0023536:37027-37046 | Msa1409710:CDS | 35.0% | |
| GTTGGAATCAAACTTCTTTC+AGG | + | tig0023536:37078-37097 | Msa1409710:CDS | 35.0% | |
| TCATCAAATTCCTCGATATC+TGG | + | tig0023536:37111-37130 | Msa1409710:CDS | 35.0% | |
| GAGATAGAAAACTCAATCCA+AGG | + | tig0023536:37219-37238 | Msa1409710:CDS | 35.0% | |
| CGATGTAATCATCATCTGAA+GGG | - | tig0023536:36312-36331 | None:intergenic | 35.0% | |
| TCGATGTAATCATCATCTGA+AGG | - | tig0023536:36313-36332 | None:intergenic | 35.0% | |
| AGATGATGATTACATCGACA+TGG | + | tig0023536:36315-36334 | Msa1409710:CDS | 35.0% | |
| ! | ATTTGGAACTCAAACTCTCT+AGG | - | tig0023536:36400-36419 | None:intergenic | 35.0% |
| CTTGAACAATGGAAGACATT+TGG | - | tig0023536:36417-36436 | None:intergenic | 35.0% | |
| !!! | CAAACCTTTTGAGGTTGAAA+AGG | + | tig0023536:36549-36568 | Msa1409710:CDS | 35.0% |
| GTAAAAGTAGTAGTGGCTAA+TGG | - | tig0023536:36601-36620 | None:intergenic | 35.0% | |
| GAAATATTGCAGGACTCAAA+TGG | - | tig0023536:36643-36662 | None:intergenic | 35.0% | |
| ATCAGATGGTGAAATATTGC+AGG | - | tig0023536:36653-36672 | None:intergenic | 35.0% | |
| CTAACTTGACAAGAATCAGA+TGG | - | tig0023536:36667-36686 | None:intergenic | 35.0% | |
| TTGAAAACCAGAAGAAGTCA+TGG | + | tig0023536:36755-36774 | Msa1409710:CDS | 35.0% | |
| TGCTCTTGAAGCCTTTAATT+TGG | - | tig0023536:36812-36831 | None:intergenic | 35.0% | |
| TCAACAAAAGTTGCTGATGA+AGG | + | tig0023536:36886-36905 | Msa1409710:CDS | 35.0% | |
| AAGGTTCAGTTTCAAAAGCA+AGG | + | tig0023536:36905-36924 | Msa1409710:CDS | 35.0% | |
| AGGTTCAGTTTCAAAAGCAA+GGG | + | tig0023536:36906-36925 | Msa1409710:CDS | 35.0% | |
| ATCCATATGGCCAAATTCAA+AGG | + | tig0023536:36965-36984 | Msa1409710:CDS | 35.0% | |
| ! | GATAGCTTTGCCTTTGAATT+TGG | - | tig0023536:36978-36997 | None:intergenic | 35.0% |
| AAAGAAAAGAGCAGTGAAGA+TGG | + | tig0023536:37027-37046 | Msa1409710:CDS | 35.0% | |
| GTTGGAATCAAACTTCTTTC+AGG | + | tig0023536:37078-37097 | Msa1409710:CDS | 35.0% | |
| TCATCAAATTCCTCGATATC+TGG | + | tig0023536:37111-37130 | Msa1409710:CDS | 35.0% | |
| GAGATAGAAAACTCAATCCA+AGG | + | tig0023536:37219-37238 | Msa1409710:CDS | 35.0% | |
| !! | TCAAACTCTCTAGGATGTTG+TGG | - | tig0023536:36391-36410 | None:intergenic | 40.0% |
| TGGCTCTTTCTCTTGAACAA+TGG | - | tig0023536:36428-36447 | None:intergenic | 40.0% | |
| TTGTAGAAAAGCTCATCAGC+TGG | - | tig0023536:36460-36479 | None:intergenic | 40.0% | |
| ! | GCTGATGAGCTTTTCTACAA+AGG | + | tig0023536:36460-36479 | Msa1409710:CDS | 40.0% |
| ! | TTTTCGACCATTTGTAACCG+AGG | - | tig0023536:36511-36530 | None:intergenic | 40.0% |
| !! | AAGGTTTGTGAGGGTTTTGA+AGG | - | tig0023536:36537-36556 | None:intergenic | 40.0% |
| ! | AAACCCTCACAAACCTTTTG+AGG | + | tig0023536:36540-36559 | Msa1409710:CDS | 40.0% |
| CAACCTCAAAAGGTTTGTGA+GGG | - | tig0023536:36546-36565 | None:intergenic | 40.0% | |
| TCAACCTCAAAAGGTTTGTG+AGG | - | tig0023536:36547-36566 | None:intergenic | 40.0% | |
| GTCGAGGTTATAATACTCCT+CGG | - | tig0023536:36704-36723 | None:intergenic | 40.0% | |
| TCTTAGTCCATGACTTCTTC+TGG | - | tig0023536:36765-36784 | None:intergenic | 40.0% | |
| !! | AAGTCCTGGTTTGGAAAATC+TGG | + | tig0023536:36838-36857 | Msa1409710:CDS | 40.0% |
| ! | ACAACCAGATTTTCCAAACC+AGG | - | tig0023536:36845-36864 | None:intergenic | 40.0% |
| TGCCTTTGAATTTGGCCATA+TGG | - | tig0023536:36970-36989 | None:intergenic | 40.0% | |
| AAGGCAAAGCTATCAGTCTT+CGG | + | tig0023536:36984-37003 | Msa1409710:CDS | 40.0% | |
| CACAGAAGATCATTCTCTGT+TGG | + | tig0023536:37060-37079 | Msa1409710:CDS | 40.0% | |
| AAACTCACCAGCTTCTCAAA+AGG | + | tig0023536:37178-37197 | Msa1409710:CDS | 40.0% | |
| !! | TCAAACTCTCTAGGATGTTG+TGG | - | tig0023536:36391-36410 | None:intergenic | 40.0% |
| TGGCTCTTTCTCTTGAACAA+TGG | - | tig0023536:36428-36447 | None:intergenic | 40.0% | |
| TTGTAGAAAAGCTCATCAGC+TGG | - | tig0023536:36460-36479 | None:intergenic | 40.0% | |
| ! | GCTGATGAGCTTTTCTACAA+AGG | + | tig0023536:36460-36479 | Msa1409710:CDS | 40.0% |
| ! | TTTTCGACCATTTGTAACCG+AGG | - | tig0023536:36511-36530 | None:intergenic | 40.0% |
| !! | AAGGTTTGTGAGGGTTTTGA+AGG | - | tig0023536:36537-36556 | None:intergenic | 40.0% |
| ! | AAACCCTCACAAACCTTTTG+AGG | + | tig0023536:36540-36559 | Msa1409710:CDS | 40.0% |
| CAACCTCAAAAGGTTTGTGA+GGG | - | tig0023536:36546-36565 | None:intergenic | 40.0% | |
| TCAACCTCAAAAGGTTTGTG+AGG | - | tig0023536:36547-36566 | None:intergenic | 40.0% | |
| GTCGAGGTTATAATACTCCT+CGG | - | tig0023536:36704-36723 | None:intergenic | 40.0% | |
| TCTTAGTCCATGACTTCTTC+TGG | - | tig0023536:36765-36784 | None:intergenic | 40.0% | |
| !! | AAGTCCTGGTTTGGAAAATC+TGG | + | tig0023536:36838-36857 | Msa1409710:CDS | 40.0% |
| ! | ACAACCAGATTTTCCAAACC+AGG | - | tig0023536:36845-36864 | None:intergenic | 40.0% |
| TGCCTTTGAATTTGGCCATA+TGG | - | tig0023536:36970-36989 | None:intergenic | 40.0% | |
| AAGGCAAAGCTATCAGTCTT+CGG | + | tig0023536:36984-37003 | Msa1409710:CDS | 40.0% | |
| CACAGAAGATCATTCTCTGT+TGG | + | tig0023536:37060-37079 | Msa1409710:CDS | 40.0% | |
| AAACTCACCAGCTTCTCAAA+AGG | + | tig0023536:37178-37197 | Msa1409710:CDS | 40.0% | |
| TCATCAGCTGGTGAAGTTGT+TGG | - | tig0023536:36448-36467 | None:intergenic | 45.0% | |
| CGGCGTTGTAAAAGTAGTAG+TGG | - | tig0023536:36608-36627 | None:intergenic | 45.0% | |
| TAGTCGAGAACTAAATGCCG+AGG | + | tig0023536:36684-36703 | Msa1409710:CDS | 45.0% | |
| TAACCTCGACTACCACACAA+CGG | + | tig0023536:36714-36733 | Msa1409710:CDS | 45.0% | |
| TACCACACAACGGATACAAG+TGG | + | tig0023536:36724-36743 | Msa1409710:CDS | 45.0% | |
| ATCCACTTGTATCCGTTGTG+TGG | - | tig0023536:36729-36748 | None:intergenic | 45.0% | |
| ! | CAAGAGCATATCTCAAGTCC+TGG | + | tig0023536:36824-36843 | Msa1409710:CDS | 45.0% |
| GCATATCTCAAGTCCTGGTT+TGG | + | tig0023536:36829-36848 | Msa1409710:CDS | 45.0% | |
| TCTTCGGTTTCTGTCATGAG+AGG | + | tig0023536:37000-37019 | Msa1409710:CDS | 45.0% | |
| TGACGATGAACCAGATATCG+AGG | - | tig0023536:37124-37143 | None:intergenic | 45.0% | |
| !! | TGTTGCACCTTTTGAGAAGC+TGG | - | tig0023536:37188-37207 | None:intergenic | 45.0% |
| TCATCAGCTGGTGAAGTTGT+TGG | - | tig0023536:36448-36467 | None:intergenic | 45.0% | |
| CGGCGTTGTAAAAGTAGTAG+TGG | - | tig0023536:36608-36627 | None:intergenic | 45.0% | |
| TAGTCGAGAACTAAATGCCG+AGG | + | tig0023536:36684-36703 | Msa1409710:CDS | 45.0% | |
| TAACCTCGACTACCACACAA+CGG | + | tig0023536:36714-36733 | Msa1409710:CDS | 45.0% | |
| TACCACACAACGGATACAAG+TGG | + | tig0023536:36724-36743 | Msa1409710:CDS | 45.0% | |
| ATCCACTTGTATCCGTTGTG+TGG | - | tig0023536:36729-36748 | None:intergenic | 45.0% | |
| ! | CAAGAGCATATCTCAAGTCC+TGG | + | tig0023536:36824-36843 | Msa1409710:CDS | 45.0% |
| GCATATCTCAAGTCCTGGTT+TGG | + | tig0023536:36829-36848 | Msa1409710:CDS | 45.0% | |
| TCTTCGGTTTCTGTCATGAG+AGG | + | tig0023536:37000-37019 | Msa1409710:CDS | 45.0% | |
| TGACGATGAACCAGATATCG+AGG | - | tig0023536:37124-37143 | None:intergenic | 45.0% | |
| !! | TGTTGCACCTTTTGAGAAGC+TGG | - | tig0023536:37188-37207 | None:intergenic | 45.0% |
| TAACCGAGGTGGAAGGTGAA+GGG | - | tig0023536:36497-36516 | None:intergenic | 50.0% | |
| CCATTTGTAACCGAGGTGGA+AGG | - | tig0023536:36504-36523 | None:intergenic | 50.0% | |
| CCTTCCACCTCGGTTACAAA+TGG | + | tig0023536:36501-36520 | Msa1409710:CDS | 50.0% | |
| TCGACCATTTGTAACCGAGG+TGG | - | tig0023536:36508-36527 | None:intergenic | 50.0% | |
| ! | ACTTTTACAACGCCGACCAC+CGG | + | tig0023536:36613-36632 | Msa1409710:CDS | 50.0% |
| TATCCGTTGTGTGGTAGTCG+AGG | - | tig0023536:36720-36739 | None:intergenic | 50.0% | |
| TGCAGTGTGCAATTGCTCCT+TGG | - | tig0023536:37239-37258 | None:intergenic | 50.0% | |
| TAACCGAGGTGGAAGGTGAA+GGG | - | tig0023536:36497-36516 | None:intergenic | 50.0% | |
| CCATTTGTAACCGAGGTGGA+AGG | - | tig0023536:36504-36523 | None:intergenic | 50.0% | |
| CCTTCCACCTCGGTTACAAA+TGG | + | tig0023536:36501-36520 | Msa1409710:CDS | 50.0% | |
| TCGACCATTTGTAACCGAGG+TGG | - | tig0023536:36508-36527 | None:intergenic | 50.0% | |
| ! | ACTTTTACAACGCCGACCAC+CGG | + | tig0023536:36613-36632 | Msa1409710:CDS | 50.0% |
| TATCCGTTGTGTGGTAGTCG+AGG | - | tig0023536:36720-36739 | None:intergenic | 50.0% | |
| TGCAGTGTGCAATTGCTCCT+TGG | - | tig0023536:37239-37258 | None:intergenic | 50.0% | |
| AACCGAGGTGGAAGGTGAAG+GGG | - | tig0023536:36496-36515 | None:intergenic | 55.0% | |
| GTAACCGAGGTGGAAGGTGA+AGG | - | tig0023536:36498-36517 | None:intergenic | 55.0% | |
| ! | TCAAATGGTGTGCCGGTGGT+CGG | - | tig0023536:36628-36647 | None:intergenic | 55.0% |
| GCAGGACTCAAATGGTGTGC+CGG | - | tig0023536:36635-36654 | None:intergenic | 55.0% | |
| AACCGAGGTGGAAGGTGAAG+GGG | - | tig0023536:36496-36515 | None:intergenic | 55.0% | |
| GTAACCGAGGTGGAAGGTGA+AGG | - | tig0023536:36498-36517 | None:intergenic | 55.0% | |
| ! | TCAAATGGTGTGCCGGTGGT+CGG | - | tig0023536:36628-36647 | None:intergenic | 55.0% |
| GCAGGACTCAAATGGTGTGC+CGG | - | tig0023536:36635-36654 | None:intergenic | 55.0% | |
| TCCCCCTTCACCTTCCACCT+CGG | + | tig0023536:36491-36510 | Msa1409710:CDS | 60.0% | |
| ACCGAGGTGGAAGGTGAAGG+GGG | - | tig0023536:36495-36514 | None:intergenic | 60.0% | |
| GGACTCAAATGGTGTGCCGG+TGG | - | tig0023536:36632-36651 | None:intergenic | 60.0% | |
| TCCCCCTTCACCTTCCACCT+CGG | + | tig0023536:36491-36510 | Msa1409710:CDS | 60.0% | |
| ACCGAGGTGGAAGGTGAAGG+GGG | - | tig0023536:36495-36514 | None:intergenic | 60.0% | |
| GGACTCAAATGGTGTGCCGG+TGG | - | tig0023536:36632-36651 | None:intergenic | 60.0% | |
| GAGGTGGAAGGTGAAGGGGG+AGG | - | tig0023536:36492-36511 | None:intergenic | 65.0% | |
| GAGGTGGAAGGTGAAGGGGG+AGG | - | tig0023536:36492-36511 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023536 | gene | 36280 | 37284 | 36280 | ID=Msa1409710;Name=Msa1409710 |
| tig0023536 | mRNA | 36280 | 37284 | 36280 | ID=Msa1409710-mRNA-1;Parent=Msa1409710;Name=Msa1409710-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|334 |
| tig0023536 | exon | 36280 | 37284 | 36280 | ID=Msa1409710-mRNA-1:exon:26140;Parent=Msa1409710-mRNA-1 |
| tig0023536 | CDS | 36280 | 37284 | 36280 | ID=Msa1409710-mRNA-1:cds;Parent=Msa1409710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
