AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0751720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0751720 MtrunA17_Chr5g0394281 94.247 365 7 7 1 363 1 353 0.0 654
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0751720 AT5G26230.1 47.692 325 132 8 44 348 25 331 4.92e-71 225

Find 82 sgRNAs with CRISPR-Local

Find 178 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACTACTAACCCCTGGTTTAT+TGG 0.157769 5_2:-5204144 None:intergenic
GGAGGAAGTGGCGGAGGAGG+TGG 0.198247 5_2:-5203376 None:intergenic
GGAAGTGGCGGAGGAGGTGG+AGG 0.258777 5_2:-5203373 None:intergenic
GAAACACAGCTTCTCTTTCT+TGG 0.279131 5_2:-5203963 None:intergenic
TGTTGTATTGGCATTACTAT+TGG 0.343447 5_2:-5203823 None:intergenic
AGTGGCGGAGGAGGTGGAGG+AGG 0.348526 5_2:-5203370 None:intergenic
AGATCTTCACCAAGTCATTC+TGG 0.364909 5_2:+5204005 Msa0751720:CDS
AGTAGTTAACGTTGTTGTAT+TGG 0.374252 5_2:-5203835 None:intergenic
TAGCAACAGTTTCACCTTCT+CGG 0.380074 5_2:-5203662 None:intergenic
GGAGGAGGAAGTGGCGGAGG+AGG 0.382522 5_2:-5203379 None:intergenic
TTCTGGCGTTCTTTCACAAA+AGG 0.390582 5_2:+5204022 Msa0751720:CDS
AGCAACAGTTTCACCTTCTC+GGG 0.399484 5_2:-5203661 None:intergenic
CAAAAGGGTGTTCTTCTTCG+TGG 0.404135 5_2:+5204038 Msa0751720:CDS
AGAGAAGAAAAGAGCTGAGA+TGG 0.412803 5_2:+5203113 Msa0751720:CDS
AGGAGGTGGAGGAGGAAGAG+AGG 0.415500 5_2:-5203362 None:intergenic
GAGAAGAAAAGAGCTGAGAT+GGG 0.425520 5_2:+5203114 Msa0751720:CDS
GAAAGAAGTGGTGGAATCAT+TGG 0.430173 5_2:-5203436 None:intergenic
AGACAAAGAGAAATACTTGT+TGG 0.431020 5_2:-5203598 None:intergenic
CTTCTCTACCACATCATACA+TGG 0.432454 5_2:-5203097 None:intergenic
GGAGGATTTGCGAGGTGAAA+TGG 0.432667 5_2:-5203247 None:intergenic
AGCAGTGGAGGAGGAAGTGG+CGG 0.433040 5_2:-5203385 None:intergenic
AGTGGAGGAGGAAGTGGCGG+AGG 0.439902 5_2:-5203382 None:intergenic
CGTGAAGAATCACAAGAATC+AGG 0.440955 5_2:-5203480 None:intergenic
GGGAGCAGTGGAGGAGGAAG+TGG 0.441095 5_2:-5203388 None:intergenic
TCTTCTTCTGTTACAGAACT+TGG 0.446376 5_2:-5203504 None:intergenic
TGGAGGAGGAAGAGAGGAGG+AGG 0.451422 5_2:-5203356 None:intergenic
CGCTACTACCGGTGGAATCA+CGG 0.456800 5_2:-5203410 None:intergenic
TGAATTGGATCTAGTGTTGT+TGG 0.465264 5_2:-5203562 None:intergenic
ATCATTGGAGGCGCTACTAC+CGG 0.488441 5_2:-5203421 None:intergenic
AATGAGTGTTACTGCTAAAG+AGG 0.495711 5_2:+5203719 Msa0751720:CDS
ATGAGTAATAGCACCTTGAA+TGG 0.497731 5_2:-5204102 None:intergenic
TGTGAAAGTTTCTCGTACAA+TGG 0.500772 5_2:-5203771 None:intergenic
GGAATCACGGGGAGCAGTGG+AGG 0.500991 5_2:-5203397 None:intergenic
AGGTGGAGGAGGAAGAGAGG+AGG 0.507332 5_2:-5203359 None:intergenic
GGCACTCTGCAACTCTTCCA+TGG 0.508446 5_2:-5204081 None:intergenic
GCTACTACCGGTGGAATCAC+GGG 0.509033 5_2:-5203409 None:intergenic
TCTGGCGTTCTTTCACAAAA+GGG 0.511252 5_2:+5204023 Msa0751720:CDS
GGAGGAGGAAGAGAGGAGGA+GGG 0.513190 5_2:-5203355 None:intergenic
ATACGAGGGGAGAGATGAAG+AGG 0.517544 5_2:-5203318 None:intergenic
GGTGGAATCACGGGGAGCAG+TGG 0.517781 5_2:-5203400 None:intergenic
GCAGATGAACTCTTCTACAA+AGG 0.517915 5_2:+5203285 Msa0751720:CDS
ATCACGGGGAGCAGTGGAGG+AGG 0.520130 5_2:-5203394 None:intergenic
AATGAGTGTGATGGTGATGA+AGG 0.520154 5_2:-5203186 None:intergenic
GGTGAAGATCTCATCGAAGA+AGG 0.550102 5_2:-5203993 None:intergenic
TCATGATTACTACTAACCCC+TGG 0.551114 5_2:-5204152 None:intergenic
TGCAGGACAGAGAGTGTTGG+AGG 0.552177 5_2:-5203265 None:intergenic
ACTGCTCCCCGTGATTCCAC+CGG 0.554614 5_2:+5203402 Msa0751720:CDS
ACAGCAACAAACAGTGGAGG+AGG 0.558053 5_2:+5203797 Msa0751720:CDS
GAGGAGGAGGGTACGTACCA+TGG 0.558606 5_2:-5203343 None:intergenic
GAGTTGCAGAGTGCCATTCA+AGG 0.563158 5_2:+5204089 Msa0751720:CDS
AGAGATGAAGAGGTAAGAGT+TGG 0.563757 5_2:-5203308 None:intergenic
AACGTTAACTACTACGACAA+CGG 0.575052 5_2:+5203845 Msa0751720:CDS
TGATCGAGATGCTTCTTCCA+TGG 0.576373 5_2:+5204064 Msa0751720:CDS
AGAAGAAAAGAGCTGAGATG+GGG 0.580424 5_2:+5203115 Msa0751720:CDS
TTGTAGAAGAGTTCATCTGC+AGG 0.581095 5_2:-5203282 None:intergenic
ATCTGCAGGACAGAGAGTGT+TGG 0.581581 5_2:-5203268 None:intergenic
TCTTTGATTACCAATAAACC+AGG 0.582297 5_2:+5204134 Msa0751720:CDS
TCTCTCCCCTCGTATCTCCA+TGG 0.583262 5_2:+5203326 Msa0751720:CDS
GAGAAGAAAGAGAATGTGGC+GGG 0.590250 5_2:+5203900 Msa0751720:CDS
ACCGTTGCTAAAACCCGAGA+AGG 0.593026 5_2:+5203648 Msa0751720:CDS
ATCTGAGAAGAAAGAGAATG+TGG 0.594317 5_2:+5203896 Msa0751720:CDS
AGAAGTGGTGGAATCATTGG+AGG 0.594966 5_2:-5203433 None:intergenic
CTTTGATTACCAATAAACCA+GGG 0.602225 5_2:+5204135 Msa0751720:CDS
ATCGCTGATGAAAGAAGTGG+TGG 0.613739 5_2:-5203445 None:intergenic
ATTGGATCTAGTGTTGTTGG+AGG 0.616982 5_2:-5203559 None:intergenic
GAAAGAACGCCAGAATGACT+TGG 0.620408 5_2:-5204014 None:intergenic
GATTGTGAACTCAAAATCTG+AGG 0.622599 5_2:-5203223 None:intergenic
ATTGGAGGCGCTACTACCGG+TGG 0.625649 5_2:-5203418 None:intergenic
ATGAGTGTGATGGTGATGAA+GGG 0.631861 5_2:-5203185 None:intergenic
AAGGGTGTTCTTCTTCGTGG+TGG 0.640900 5_2:+5204041 Msa0751720:CDS
TACGTACCATGGAGATACGA+GGG 0.643698 5_2:-5203332 None:intergenic
CAGCAACAAACAGTGGAGGA+GGG 0.645100 5_2:+5203798 Msa0751720:CDS
AAAACAGCAACAAACAGTGG+AGG 0.646252 5_2:+5203794 Msa0751720:CDS
TGAGAAGAAAGAGAATGTGG+CGG 0.646818 5_2:+5203899 Msa0751720:CDS
CTACTACCGGTGGAATCACG+GGG 0.647123 5_2:-5203408 None:intergenic
GATGATGAGAATGAGTGTGA+TGG 0.651954 5_2:-5203195 None:intergenic
AAGATCGCTGATGAAAGAAG+TGG 0.658445 5_2:-5203448 None:intergenic
TTTGATTACCAATAAACCAG+GGG 0.666066 5_2:+5204136 Msa0751720:CDS
AGAGTGTTGGAGGATTTGCG+AGG 0.696367 5_2:-5203255 None:intergenic
GTACGTACCATGGAGATACG+AGG 0.696996 5_2:-5203333 None:intergenic
ACGTACCATGGAGATACGAG+GGG 0.723196 5_2:-5203331 None:intergenic
GGACGCAACCATGTATGATG+TGG 0.730640 5_2:+5203089 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATGTTATCTCATTCGTTTT+CGG + chr5_2:5203926-5203945 Msa0751720:CDS 25.0%
!! TATGTTATCTCATTCGTTTT+CGG + chr5_2:5203926-5203945 Msa0751720:CDS 25.0%
! TGTTTCTTTTGCTCTGTTTT+TGG - chr5_2:5203151-5203170 None:intergenic 30.0%
AGACAAAGAGAAATACTTGT+TGG - chr5_2:5203601-5203620 None:intergenic 30.0%
! TGTTGTATTGGCATTACTAT+TGG - chr5_2:5203826-5203845 None:intergenic 30.0%
AGTAGTTAACGTTGTTGTAT+TGG - chr5_2:5203838-5203857 None:intergenic 30.0%
! ATGTTATCTCATTCGTTTTC+GGG + chr5_2:5203927-5203946 Msa0751720:CDS 30.0%
TCTTTGATTACCAATAAACC+AGG + chr5_2:5204134-5204153 Msa0751720:CDS 30.0%
CTTTGATTACCAATAAACCA+GGG + chr5_2:5204135-5204154 Msa0751720:CDS 30.0%
TTTGATTACCAATAAACCAG+GGG + chr5_2:5204136-5204155 Msa0751720:CDS 30.0%
! TGTTTCTTTTGCTCTGTTTT+TGG - chr5_2:5203151-5203170 None:intergenic 30.0%
AGACAAAGAGAAATACTTGT+TGG - chr5_2:5203601-5203620 None:intergenic 30.0%
! TGTTGTATTGGCATTACTAT+TGG - chr5_2:5203826-5203845 None:intergenic 30.0%
AGTAGTTAACGTTGTTGTAT+TGG - chr5_2:5203838-5203857 None:intergenic 30.0%
! ATGTTATCTCATTCGTTTTC+GGG + chr5_2:5203927-5203946 Msa0751720:CDS 30.0%
TCTTTGATTACCAATAAACC+AGG + chr5_2:5204134-5204153 Msa0751720:CDS 30.0%
CTTTGATTACCAATAAACCA+GGG + chr5_2:5204135-5204154 Msa0751720:CDS 30.0%
TTTGATTACCAATAAACCAG+GGG + chr5_2:5204136-5204155 Msa0751720:CDS 30.0%
GATTGTGAACTCAAAATCTG+AGG - chr5_2:5203226-5203245 None:intergenic 35.0%
TCTTCTTCTGTTACAGAACT+TGG - chr5_2:5203507-5203526 None:intergenic 35.0%
TGAATTGGATCTAGTGTTGT+TGG - chr5_2:5203565-5203584 None:intergenic 35.0%
! GGTTTTCTTCAACTGTGAAT+TGG - chr5_2:5203580-5203599 None:intergenic 35.0%
GGTTTCTTTACGAAAAACAG+AGG - chr5_2:5203631-5203650 None:intergenic 35.0%
! AATGAGTGTTACTGCTAAAG+AGG + chr5_2:5203719-5203738 Msa0751720:CDS 35.0%
TGTGAAAGTTTCTCGTACAA+TGG - chr5_2:5203774-5203793 None:intergenic 35.0%
ACAAAAACAGCAACAAACAG+TGG + chr5_2:5203791-5203810 Msa0751720:CDS 35.0%
AACGTTAACTACTACGACAA+CGG + chr5_2:5203845-5203864 Msa0751720:CDS 35.0%
ATCTGAGAAGAAAGAGAATG+TGG + chr5_2:5203896-5203915 Msa0751720:CDS 35.0%
! TGTTATCTCATTCGTTTTCG+GGG + chr5_2:5203928-5203947 Msa0751720:CDS 35.0%
!! ATTCGTTTTCGGGGAATTTA+AGG + chr5_2:5203937-5203956 Msa0751720:CDS 35.0%
ATGAGTAATAGCACCTTGAA+TGG - chr5_2:5204105-5204124 None:intergenic 35.0%
GATTGTGAACTCAAAATCTG+AGG - chr5_2:5203226-5203245 None:intergenic 35.0%
TCTTCTTCTGTTACAGAACT+TGG - chr5_2:5203507-5203526 None:intergenic 35.0%
TGAATTGGATCTAGTGTTGT+TGG - chr5_2:5203565-5203584 None:intergenic 35.0%
! GGTTTTCTTCAACTGTGAAT+TGG - chr5_2:5203580-5203599 None:intergenic 35.0%
GGTTTCTTTACGAAAAACAG+AGG - chr5_2:5203631-5203650 None:intergenic 35.0%
! AATGAGTGTTACTGCTAAAG+AGG + chr5_2:5203719-5203738 Msa0751720:CDS 35.0%
TGTGAAAGTTTCTCGTACAA+TGG - chr5_2:5203774-5203793 None:intergenic 35.0%
ACAAAAACAGCAACAAACAG+TGG + chr5_2:5203791-5203810 Msa0751720:CDS 35.0%
AACGTTAACTACTACGACAA+CGG + chr5_2:5203845-5203864 Msa0751720:CDS 35.0%
ATCTGAGAAGAAAGAGAATG+TGG + chr5_2:5203896-5203915 Msa0751720:CDS 35.0%
! TGTTATCTCATTCGTTTTCG+GGG + chr5_2:5203928-5203947 Msa0751720:CDS 35.0%
!! ATTCGTTTTCGGGGAATTTA+AGG + chr5_2:5203937-5203956 Msa0751720:CDS 35.0%
ATGAGTAATAGCACCTTGAA+TGG - chr5_2:5204105-5204124 None:intergenic 35.0%
AGAGAAGAAAAGAGCTGAGA+TGG + chr5_2:5203113-5203132 Msa0751720:CDS 40.0%
GAGAAGAAAAGAGCTGAGAT+GGG + chr5_2:5203114-5203133 Msa0751720:CDS 40.0%
AGAAGAAAAGAGCTGAGATG+GGG + chr5_2:5203115-5203134 Msa0751720:CDS 40.0%
! ATGAGTGTGATGGTGATGAA+GGG - chr5_2:5203188-5203207 None:intergenic 40.0%
! AATGAGTGTGATGGTGATGA+AGG - chr5_2:5203189-5203208 None:intergenic 40.0%
GATGATGAGAATGAGTGTGA+TGG - chr5_2:5203198-5203217 None:intergenic 40.0%
TTGTAGAAGAGTTCATCTGC+AGG - chr5_2:5203285-5203304 None:intergenic 40.0%
GCAGATGAACTCTTCTACAA+AGG + chr5_2:5203285-5203304 Msa0751720:CDS 40.0%
AGAGATGAAGAGGTAAGAGT+TGG - chr5_2:5203311-5203330 None:intergenic 40.0%
! GAAAGAAGTGGTGGAATCAT+TGG - chr5_2:5203439-5203458 None:intergenic 40.0%
AAGATCGCTGATGAAAGAAG+TGG - chr5_2:5203451-5203470 None:intergenic 40.0%
CGTGAAGAATCACAAGAATC+AGG - chr5_2:5203483-5203502 None:intergenic 40.0%
! ATTGGATCTAGTGTTGTTGG+AGG - chr5_2:5203562-5203581 None:intergenic 40.0%
TAGCAACAGTTTCACCTTCT+CGG - chr5_2:5203665-5203684 None:intergenic 40.0%
AAAACAGCAACAAACAGTGG+AGG + chr5_2:5203794-5203813 Msa0751720:CDS 40.0%
TGAGAAGAAAGAGAATGTGG+CGG + chr5_2:5203899-5203918 Msa0751720:CDS 40.0%
GAAACACAGCTTCTCTTTCT+TGG - chr5_2:5203966-5203985 None:intergenic 40.0%
AGATCTTCACCAAGTCATTC+TGG + chr5_2:5204005-5204024 Msa0751720:CDS 40.0%
TTCTGGCGTTCTTTCACAAA+AGG + chr5_2:5204022-5204041 Msa0751720:CDS 40.0%
TCTGGCGTTCTTTCACAAAA+GGG + chr5_2:5204023-5204042 Msa0751720:CDS 40.0%
ACTACTAACCCCTGGTTTAT+TGG - chr5_2:5204147-5204166 None:intergenic 40.0%
TCATGATTACTACTAACCCC+TGG - chr5_2:5204155-5204174 None:intergenic 40.0%
AGAGAAGAAAAGAGCTGAGA+TGG + chr5_2:5203113-5203132 Msa0751720:CDS 40.0%
GAGAAGAAAAGAGCTGAGAT+GGG + chr5_2:5203114-5203133 Msa0751720:CDS 40.0%
AGAAGAAAAGAGCTGAGATG+GGG + chr5_2:5203115-5203134 Msa0751720:CDS 40.0%
! ATGAGTGTGATGGTGATGAA+GGG - chr5_2:5203188-5203207 None:intergenic 40.0%
! AATGAGTGTGATGGTGATGA+AGG - chr5_2:5203189-5203208 None:intergenic 40.0%
GATGATGAGAATGAGTGTGA+TGG - chr5_2:5203198-5203217 None:intergenic 40.0%
TTGTAGAAGAGTTCATCTGC+AGG - chr5_2:5203285-5203304 None:intergenic 40.0%
GCAGATGAACTCTTCTACAA+AGG + chr5_2:5203285-5203304 Msa0751720:CDS 40.0%
AGAGATGAAGAGGTAAGAGT+TGG - chr5_2:5203311-5203330 None:intergenic 40.0%
! GAAAGAAGTGGTGGAATCAT+TGG - chr5_2:5203439-5203458 None:intergenic 40.0%
AAGATCGCTGATGAAAGAAG+TGG - chr5_2:5203451-5203470 None:intergenic 40.0%
CGTGAAGAATCACAAGAATC+AGG - chr5_2:5203483-5203502 None:intergenic 40.0%
! ATTGGATCTAGTGTTGTTGG+AGG - chr5_2:5203562-5203581 None:intergenic 40.0%
TAGCAACAGTTTCACCTTCT+CGG - chr5_2:5203665-5203684 None:intergenic 40.0%
AAAACAGCAACAAACAGTGG+AGG + chr5_2:5203794-5203813 Msa0751720:CDS 40.0%
TGAGAAGAAAGAGAATGTGG+CGG + chr5_2:5203899-5203918 Msa0751720:CDS 40.0%
GAAACACAGCTTCTCTTTCT+TGG - chr5_2:5203966-5203985 None:intergenic 40.0%
AGATCTTCACCAAGTCATTC+TGG + chr5_2:5204005-5204024 Msa0751720:CDS 40.0%
TTCTGGCGTTCTTTCACAAA+AGG + chr5_2:5204022-5204041 Msa0751720:CDS 40.0%
TCTGGCGTTCTTTCACAAAA+GGG + chr5_2:5204023-5204042 Msa0751720:CDS 40.0%
ACTACTAACCCCTGGTTTAT+TGG - chr5_2:5204147-5204166 None:intergenic 40.0%
TCATGATTACTACTAACCCC+TGG - chr5_2:5204155-5204174 None:intergenic 40.0%
TACGTACCATGGAGATACGA+GGG - chr5_2:5203335-5203354 None:intergenic 45.0%
! AGAAGTGGTGGAATCATTGG+AGG - chr5_2:5203436-5203455 None:intergenic 45.0%
ATCGCTGATGAAAGAAGTGG+TGG - chr5_2:5203448-5203467 None:intergenic 45.0%
!! ACCTTCTCGGGTTTTAGCAA+CGG - chr5_2:5203652-5203671 None:intergenic 45.0%
AGCAACAGTTTCACCTTCTC+GGG - chr5_2:5203664-5203683 None:intergenic 45.0%
GAGAAGAAAGAGAATGTGGC+GGG + chr5_2:5203900-5203919 Msa0751720:CDS 45.0%
GGTGAAGATCTCATCGAAGA+AGG - chr5_2:5203996-5204015 None:intergenic 45.0%
GAAAGAACGCCAGAATGACT+TGG - chr5_2:5204017-5204036 None:intergenic 45.0%
!! CAAAAGGGTGTTCTTCTTCG+TGG + chr5_2:5204038-5204057 Msa0751720:CDS 45.0%
TGATCGAGATGCTTCTTCCA+TGG + chr5_2:5204064-5204083 Msa0751720:CDS 45.0%
TACGTACCATGGAGATACGA+GGG - chr5_2:5203335-5203354 None:intergenic 45.0%
! AGAAGTGGTGGAATCATTGG+AGG - chr5_2:5203436-5203455 None:intergenic 45.0%
ATCGCTGATGAAAGAAGTGG+TGG - chr5_2:5203448-5203467 None:intergenic 45.0%
!! ACCTTCTCGGGTTTTAGCAA+CGG - chr5_2:5203652-5203671 None:intergenic 45.0%
AGCAACAGTTTCACCTTCTC+GGG - chr5_2:5203664-5203683 None:intergenic 45.0%
GAGAAGAAAGAGAATGTGGC+GGG + chr5_2:5203900-5203919 Msa0751720:CDS 45.0%
GGTGAAGATCTCATCGAAGA+AGG - chr5_2:5203996-5204015 None:intergenic 45.0%
GAAAGAACGCCAGAATGACT+TGG - chr5_2:5204017-5204036 None:intergenic 45.0%
!! CAAAAGGGTGTTCTTCTTCG+TGG + chr5_2:5204038-5204057 Msa0751720:CDS 45.0%
TGATCGAGATGCTTCTTCCA+TGG + chr5_2:5204064-5204083 Msa0751720:CDS 45.0%
GGAGGATTTGCGAGGTGAAA+TGG - chr5_2:5203250-5203269 None:intergenic 50.0%
!! AGAGTGTTGGAGGATTTGCG+AGG - chr5_2:5203258-5203277 None:intergenic 50.0%
! ATCTGCAGGACAGAGAGTGT+TGG - chr5_2:5203271-5203290 None:intergenic 50.0%
ATACGAGGGGAGAGATGAAG+AGG - chr5_2:5203321-5203340 None:intergenic 50.0%
ACGTACCATGGAGATACGAG+GGG - chr5_2:5203334-5203353 None:intergenic 50.0%
GTACGTACCATGGAGATACG+AGG - chr5_2:5203336-5203355 None:intergenic 50.0%
!! ATCATTGGAGGCGCTACTAC+CGG - chr5_2:5203424-5203443 None:intergenic 50.0%
ACCGTTGCTAAAACCCGAGA+AGG + chr5_2:5203648-5203667 Msa0751720:CDS 50.0%
ACAGCAACAAACAGTGGAGG+AGG + chr5_2:5203797-5203816 Msa0751720:CDS 50.0%
CAGCAACAAACAGTGGAGGA+GGG + chr5_2:5203798-5203817 Msa0751720:CDS 50.0%
!! AAGGGTGTTCTTCTTCGTGG+TGG + chr5_2:5204041-5204060 Msa0751720:CDS 50.0%
! GAGTTGCAGAGTGCCATTCA+AGG + chr5_2:5204089-5204108 Msa0751720:CDS 50.0%
GGAGGATTTGCGAGGTGAAA+TGG - chr5_2:5203250-5203269 None:intergenic 50.0%
!! AGAGTGTTGGAGGATTTGCG+AGG - chr5_2:5203258-5203277 None:intergenic 50.0%
! ATCTGCAGGACAGAGAGTGT+TGG - chr5_2:5203271-5203290 None:intergenic 50.0%
ATACGAGGGGAGAGATGAAG+AGG - chr5_2:5203321-5203340 None:intergenic 50.0%
ACGTACCATGGAGATACGAG+GGG - chr5_2:5203334-5203353 None:intergenic 50.0%
GTACGTACCATGGAGATACG+AGG - chr5_2:5203336-5203355 None:intergenic 50.0%
!! ATCATTGGAGGCGCTACTAC+CGG - chr5_2:5203424-5203443 None:intergenic 50.0%
ACCGTTGCTAAAACCCGAGA+AGG + chr5_2:5203648-5203667 Msa0751720:CDS 50.0%
ACAGCAACAAACAGTGGAGG+AGG + chr5_2:5203797-5203816 Msa0751720:CDS 50.0%
CAGCAACAAACAGTGGAGGA+GGG + chr5_2:5203798-5203817 Msa0751720:CDS 50.0%
!! AAGGGTGTTCTTCTTCGTGG+TGG + chr5_2:5204041-5204060 Msa0751720:CDS 50.0%
! GAGTTGCAGAGTGCCATTCA+AGG + chr5_2:5204089-5204108 Msa0751720:CDS 50.0%
!! TGCAGGACAGAGAGTGTTGG+AGG - chr5_2:5203268-5203287 None:intergenic 55.0%
TCTCTCCCCTCGTATCTCCA+TGG + chr5_2:5203326-5203345 Msa0751720:CDS 55.0%
CTACTACCGGTGGAATCACG+GGG - chr5_2:5203411-5203430 None:intergenic 55.0%
GCTACTACCGGTGGAATCAC+GGG - chr5_2:5203412-5203431 None:intergenic 55.0%
CGCTACTACCGGTGGAATCA+CGG - chr5_2:5203413-5203432 None:intergenic 55.0%
GGCACTCTGCAACTCTTCCA+TGG - chr5_2:5204084-5204103 None:intergenic 55.0%
!! TGCAGGACAGAGAGTGTTGG+AGG - chr5_2:5203268-5203287 None:intergenic 55.0%
TCTCTCCCCTCGTATCTCCA+TGG + chr5_2:5203326-5203345 Msa0751720:CDS 55.0%
CTACTACCGGTGGAATCACG+GGG - chr5_2:5203411-5203430 None:intergenic 55.0%
GCTACTACCGGTGGAATCAC+GGG - chr5_2:5203412-5203431 None:intergenic 55.0%
CGCTACTACCGGTGGAATCA+CGG - chr5_2:5203413-5203432 None:intergenic 55.0%
GGCACTCTGCAACTCTTCCA+TGG - chr5_2:5204084-5204103 None:intergenic 55.0%
! GAGGAGGAGGGTACGTACCA+TGG - chr5_2:5203346-5203365 None:intergenic 60.0%
GGAGGAGGAAGAGAGGAGGA+GGG - chr5_2:5203358-5203377 None:intergenic 60.0%
TGGAGGAGGAAGAGAGGAGG+AGG - chr5_2:5203359-5203378 None:intergenic 60.0%
AGGTGGAGGAGGAAGAGAGG+AGG - chr5_2:5203362-5203381 None:intergenic 60.0%
AGGAGGTGGAGGAGGAAGAG+AGG - chr5_2:5203365-5203384 None:intergenic 60.0%
AGCAGTGGAGGAGGAAGTGG+CGG - chr5_2:5203388-5203407 None:intergenic 60.0%
ACTGCTCCCCGTGATTCCAC+CGG + chr5_2:5203402-5203421 Msa0751720:CDS 60.0%
!! ATTGGAGGCGCTACTACCGG+TGG - chr5_2:5203421-5203440 None:intergenic 60.0%
! GAGGAGGAGGGTACGTACCA+TGG - chr5_2:5203346-5203365 None:intergenic 60.0%
GGAGGAGGAAGAGAGGAGGA+GGG - chr5_2:5203358-5203377 None:intergenic 60.0%
TGGAGGAGGAAGAGAGGAGG+AGG - chr5_2:5203359-5203378 None:intergenic 60.0%
AGGTGGAGGAGGAAGAGAGG+AGG - chr5_2:5203362-5203381 None:intergenic 60.0%
AGGAGGTGGAGGAGGAAGAG+AGG - chr5_2:5203365-5203384 None:intergenic 60.0%
AGCAGTGGAGGAGGAAGTGG+CGG - chr5_2:5203388-5203407 None:intergenic 60.0%
ACTGCTCCCCGTGATTCCAC+CGG + chr5_2:5203402-5203421 Msa0751720:CDS 60.0%
!! ATTGGAGGCGCTACTACCGG+TGG - chr5_2:5203421-5203440 None:intergenic 60.0%
AGTGGAGGAGGAAGTGGCGG+AGG - chr5_2:5203385-5203404 None:intergenic 65.0%
GGGAGCAGTGGAGGAGGAAG+TGG - chr5_2:5203391-5203410 None:intergenic 65.0%
ATCACGGGGAGCAGTGGAGG+AGG - chr5_2:5203397-5203416 None:intergenic 65.0%
GGAATCACGGGGAGCAGTGG+AGG - chr5_2:5203400-5203419 None:intergenic 65.0%
GGTGGAATCACGGGGAGCAG+TGG - chr5_2:5203403-5203422 None:intergenic 65.0%
AGTGGAGGAGGAAGTGGCGG+AGG - chr5_2:5203385-5203404 None:intergenic 65.0%
GGGAGCAGTGGAGGAGGAAG+TGG - chr5_2:5203391-5203410 None:intergenic 65.0%
ATCACGGGGAGCAGTGGAGG+AGG - chr5_2:5203397-5203416 None:intergenic 65.0%
GGAATCACGGGGAGCAGTGG+AGG - chr5_2:5203400-5203419 None:intergenic 65.0%
GGTGGAATCACGGGGAGCAG+TGG - chr5_2:5203403-5203422 None:intergenic 65.0%
! AGTGGCGGAGGAGGTGGAGG+AGG - chr5_2:5203373-5203392 None:intergenic 70.0%
! GGAAGTGGCGGAGGAGGTGG+AGG - chr5_2:5203376-5203395 None:intergenic 70.0%
! GGAGGAAGTGGCGGAGGAGG+TGG - chr5_2:5203379-5203398 None:intergenic 70.0%
! GGAGGAGGAAGTGGCGGAGG+AGG - chr5_2:5203382-5203401 None:intergenic 70.0%
! AGTGGCGGAGGAGGTGGAGG+AGG - chr5_2:5203373-5203392 None:intergenic 70.0%
! GGAAGTGGCGGAGGAGGTGG+AGG - chr5_2:5203376-5203395 None:intergenic 70.0%
! GGAGGAAGTGGCGGAGGAGG+TGG - chr5_2:5203379-5203398 None:intergenic 70.0%
! GGAGGAGGAAGTGGCGGAGG+AGG - chr5_2:5203382-5203401 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 5203099 5204190 5203099 ID=Msa0751720;Name=Msa0751720
chr5_2 mRNA 5203099 5204190 5203099 ID=Msa0751720-mRNA-1;Parent=Msa0751720;Name=Msa0751720-mRNA-1;_AED=0.00;_eAED=0.03;_QI=0|-1|0|1|-1|1|1|0|363
chr5_2 exon 5203099 5204190 5203099 ID=Msa0751720-mRNA-1:exon:2098;Parent=Msa0751720-mRNA-1
chr5_2 CDS 5203099 5204190 5203099 ID=Msa0751720-mRNA-1:cds;Parent=Msa0751720-mRNA-1
Gene Sequence

>Msa0751720

ATGTATGATGTGGTAGAGAAGAAAAGAGCTGAGATGGGGAAGAAAAGAACCAAAAACAGAGCAAAAGAAACAAAATCATACACACTCCCTTCATCACCATCACACTCATTCTCATCATCTTCTTCCTCAGATTTTGAGTTCACAATCTCCATTTCACCTCGCAAATCCTCCAACACTCTCTGTCCTGCAGATGAACTCTTCTACAAAGGCCAACTCTTACCTCTTCATCTCTCCCCTCGTATCTCCATGGTACGTACCCTCCTCCTCTCTTCCTCCTCCACCTCCTCCGCCACTTCCTCCTCCACTGCTCCCCGTGATTCCACCGGTAGTAGCGCCTCCAATGATTCCACCACTTCTTTCATCAGCGATCTTGCTCTTTTTCCTGATTCTTGTGATTCTTCACGACCAAGTTCTGTAACAGAAGAAGATGAGTTAAAACGTCTTCATAATCACAACAATTCCTCCAACAACACTAGATCCAATTCACAGTTGAAGAAAACCAACAAGTATTTCTCTTTGTCTAGATTCTCCTCTGTTTTTCGTAAAGAAACCGTTGCTAAAACCCGAGAAGGTGAAACTGTTGCTAATAGTATTAACAACAGTTCAGTGAAGATGAAGAGAATGAGTGTTACTGCTAAAGAGGTGATACGAAAATATTTCAAGAAAGTGAAACCATTGTACGAGAAACTTTCACAAAAACAGCAACAAACAGTGGAGGAGGGTGCCAATAGTAATGCCAATACAACAACGTTAACTACTACGACAACGGTTATGTCTTTGTTAACAAAAACAGAGAGATCTGAGAAGAAAGAGAATGTGGCGGGTACTATGTTATCTCATTCGTTTTCGGGGAATTTAAGGTATCCAAGAAAGAGAAGCTGTGTTTCAAGTTGTCCTTCTTCGATGAGATCTTCACCAAGTCATTCTGGCGTTCTTTCACAAAAGGGTGTTCTTCTTCGTGGTGGTGATCGAGATGCTTCTTCCATGGAAGAGTTGCAGAGTGCCATTCAAGGTGCTATTACTCATTGCAAAAACTCTTTGATTACCAATAAACCAGGGGTTAGTAGTAATCATGAAATTAATCTCATCTAA

Protein sequence

>Msa0751720

MYDVVEKKRAEMGKKRTKNRAKETKSYTLPSSPSHSFSSSSSSDFEFTISISPRKSSNTLCPADELFYKGQLLPLHLSPRISMVRTLLLSSSSTSSATSSSTAPRDSTGSSASNDSTTSFISDLALFPDSCDSSRPSSVTEEDELKRLHNHNNSSNNTRSNSQLKKTNKYFSLSRFSSVFRKETVAKTREGETVANSINNSSVKMKRMSVTAKEVIRKYFKKVKPLYEKLSQKQQQTVEEGANSNANTTTLTTTTTVMSLLTKTERSEKKENVAGTMLSHSFSGNLRYPRKRSCVSSCPSSMRSSPSHSGVLSQKGVLLRGGDRDASSMEELQSAIQGAITHCKNSLITNKPGVSSNHEINLI*