AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0336520

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336520 MtrunA17_Chr2g0322861 96.626 326 11 0 1 326 62 387 0.0 664
Msa0336520 MtrunA17_Chr4g0024121 71.037 328 90 4 1 325 1 326 8.15e-177 492
Msa0336520 MtrunA17_Chr7g0268501 53.799 329 139 6 1 325 1 320 1.33e-119 347
Msa0336520 MtrunA17_Chr7g0268521 53.799 329 139 6 1 325 1 320 1.33e-119 347
Msa0336520 MtrunA17_Chr3g0128061 48.428 318 159 5 12 326 12 327 9.43e-97 289
Msa0336520 MtrunA17_Chr5g0402581 45.912 318 166 5 12 325 11 326 6.19e-96 287
Msa0336520 MtrunA17_Chr5g0402571 44.937 316 170 4 12 325 13 326 2.03e-94 283
Msa0336520 MtrunA17_Chr5g0404721 45.946 333 169 6 3 326 1 331 6.42e-92 277
Msa0336520 MtrunA17_Chr2g0279041 45.312 320 167 5 10 325 10 325 9.44e-92 276
Msa0336520 MtrunA17_Chr2g0292261 46.541 318 164 5 12 325 15 330 1.28e-91 277
Msa0336520 MtrunA17_Chr2g0292241 45.455 319 168 5 12 326 15 331 2.83e-91 276
Msa0336520 MtrunA17_Chr4g0070951 44.037 327 175 5 4 325 6 329 1.58e-90 273
Msa0336520 MtrunA17_Chr2g0292181 45.283 318 168 5 12 325 24 339 7.98e-90 273
Msa0336520 MtrunA17_Chr5g0405991 47.319 317 153 8 13 325 10 316 8.92e-90 271
Msa0336520 MtrunA17_Chr8g0371381 45.752 306 158 6 21 325 21 319 1.69e-88 268
Msa0336520 MtrunA17_Chr2g0292211 44.062 320 173 5 10 325 24 341 1.79e-88 269
Msa0336520 MtrunA17_Chr8g0372601 44.728 313 170 3 15 325 19 330 1.94e-88 268
Msa0336520 MtrunA17_Chr1g0157051 44.304 316 167 7 12 324 8 317 3.35e-88 267
Msa0336520 MtrunA17_Chr2g0291751 44.375 320 167 6 10 325 18 330 7.68e-88 267
Msa0336520 MtrunA17_Chr2g0299691 44.615 325 171 5 7 325 37 358 6.45e-87 265
Msa0336520 MtrunA17_Chr2g0292251 44.194 310 167 5 21 326 23 330 1.15e-86 264
Msa0336520 MtrunA17_Chr7g0258811 43.614 321 173 6 10 325 54 371 4.12e-86 263
Msa0336520 MtrunA17_Chr1g0175561 42.038 314 175 5 17 325 15 326 7.14e-86 261
Msa0336520 MtrunA17_Chr2g0292101 43.574 319 173 6 12 325 10 326 1.79e-85 261
Msa0336520 MtrunA17_Chr3g0106921 43.344 323 169 7 8 325 7 320 1.98e-85 260
Msa0336520 MtrunA17_Chr1g0204011 43.750 320 173 6 8 325 8 322 2.04e-85 260
Msa0336520 MtrunA17_Chr4g0063671 43.533 317 171 5 13 325 8 320 5.67e-85 259
Msa0336520 MtrunA17_Chr3g0129051 43.354 316 166 6 10 321 12 318 6.15e-84 256
Msa0336520 MtrunA17_Chr2g0292091 42.415 323 179 6 8 325 5 325 7.61e-84 256
Msa0336520 MtrunA17_Chr2g0292271 44.805 308 164 5 22 325 25 330 3.52e-83 255
Msa0336520 MtrunA17_Chr6g0460711 42.271 317 171 6 12 325 7 314 4.31e-83 254
Msa0336520 MtrunA17_Chr1g0164891 46.732 306 153 7 27 325 90 392 7.04e-83 256
Msa0336520 MtrunA17_Chr2g0320071 43.312 314 167 5 14 325 13 317 3.18e-82 251
Msa0336520 MtrunA17_Chr4g0013171 42.056 321 173 7 9 325 10 321 3.76e-82 251
Msa0336520 MtrunA17_Chr5g0432441 43.750 320 165 7 12 325 16 326 5.75e-82 251
Msa0336520 MtrunA17_Chr2g0292111 42.767 318 176 5 12 325 15 330 1.13e-80 249
Msa0336520 MtrunA17_Chr2g0320061 42.500 320 172 6 9 325 8 318 1.42e-80 247
Msa0336520 MtrunA17_Chr1g0188431 39.490 314 177 6 13 325 26 327 1.67e-80 248
Msa0336520 MtrunA17_Chr7g0254201 41.639 305 165 6 24 325 18 312 2.41e-80 247
Msa0336520 MtrunA17_Chr1g0194271 42.121 330 172 7 13 325 13 340 2.55e-80 248
Msa0336520 MtrunA17_Chr2g0320051 42.320 319 174 4 9 325 8 318 2.67e-80 247
Msa0336520 MtrunA17_Chr2g0320101 41.693 319 175 5 9 325 8 317 3.55e-80 246
Msa0336520 MtrunA17_Chr2g0292151 42.320 319 176 6 12 325 15 330 1.27e-79 246
Msa0336520 MtrunA17_Chr1g0194151 43.210 324 170 8 13 325 13 333 1.53e-79 245
Msa0336520 MtrunA17_Chr7g0225221 39.812 319 184 4 9 325 8 320 2.51e-79 244
Msa0336520 MtrunA17_Chr2g0296621 43.854 301 159 6 26 325 50 341 3.57e-79 244
Msa0336520 MtrunA17_Chr4g0043391 40.694 317 180 6 12 325 13 324 4.05e-79 244
Msa0336520 MtrunA17_Chr2g0292291 42.320 319 177 6 12 325 16 332 9.40e-79 244
Msa0336520 MtrunA17_Chr5g0401431 41.956 317 177 5 13 324 14 328 1.07e-78 243
Msa0336520 MtrunA17_Chr4g0013181 43.333 300 157 7 30 325 63 353 1.11e-78 244
Msa0336520 MtrunA17_Chr2g0320091 42.188 320 173 6 9 325 8 318 3.24e-78 241
Msa0336520 MtrunA17_Chr3g0114451 41.486 323 174 6 9 325 5 318 4.25e-78 241
Msa0336520 MtrunA17_Chr7g0254231 41.118 304 167 6 24 326 20 312 5.70e-78 241
Msa0336520 MtrunA17_Chr2g0278671 43.408 311 162 6 22 325 20 323 1.19e-77 240
Msa0336520 MtrunA17_Chr4g0038171 40.379 317 181 6 12 325 10 321 1.75e-77 239
Msa0336520 MtrunA17_Chr1g0213061 41.509 318 173 6 12 325 13 321 5.94e-77 238
Msa0336520 MtrunA17_Chr4g0076211 43.813 299 159 6 28 325 43 333 8.76e-77 238
Msa0336520 MtrunA17_Chr1g0155611 44.667 300 160 5 30 325 50 347 1.23e-76 238
Msa0336520 MtrunA17_Chr4g0013201 40.635 315 176 5 13 325 33 338 1.28e-76 238
Msa0336520 MtrunA17_Chr7g0244461 39.683 315 178 6 13 325 8 312 4.73e-76 236
Msa0336520 MtrunA17_Chr4g0068621 42.532 308 168 7 22 325 34 336 7.05e-76 236
Msa0336520 MtrunA17_Chr3g0129061 42.089 316 170 6 10 321 12 318 1.35e-75 235
Msa0336520 MtrunA17_Chr7g0244451 40.635 315 176 5 13 325 11 316 2.89e-75 234
Msa0336520 MtrunA17_Chr6g0477071 39.394 330 182 10 1 325 26 342 3.05e-75 234
Msa0336520 MtrunA17_Chr4g0038151 39.937 318 184 5 10 325 9 321 3.58e-75 234
Msa0336520 MtrunA17_Chr4g0038161 39.498 319 180 6 12 325 10 320 6.10e-75 233
Msa0336520 MtrunA17_Chr4g0046131 40.523 306 173 6 25 323 41 344 3.07e-74 232
Msa0336520 MtrunA17_Chr5g0432351 43.072 332 171 11 1 325 1 321 6.90e-74 230
Msa0336520 MtrunA17_Chr5g0432341 43.072 332 171 11 1 325 1 321 8.95e-74 230
Msa0336520 MtrunA17_Chr5g0400331 41.694 307 163 6 30 325 30 331 1.52e-73 230
Msa0336520 MtrunA17_Chr1g0148021 39.937 318 184 5 13 325 13 328 2.66e-72 226
Msa0336520 MtrunA17_Chr4g0013721 40.260 308 177 6 21 326 95 397 4.96e-72 229
Msa0336520 MtrunA17_Chr3g0129041 42.767 318 168 7 13 325 14 322 5.33e-72 226
Msa0336520 MtrunA17_Chr5g0438021 40.373 322 174 8 10 325 16 325 1.79e-71 224
Msa0336520 MtrunA17_Chr2g0320031 38.438 320 186 5 9 325 8 319 3.60e-71 223
Msa0336520 MtrunA17_Chr4g0013191 39.103 312 178 6 18 325 37 340 8.80e-71 223
Msa0336520 MtrunA17_Chr4g0072091 40.328 305 174 5 25 325 23 323 9.01e-71 223
Msa0336520 MtrunA17_Chr8g0364291 37.107 318 193 6 14 326 10 325 1.47e-70 222
Msa0336520 MtrunA17_Chr4g0013821 38.889 306 180 6 22 325 24 324 4.96e-70 221
Msa0336520 MtrunA17_Chr4g0053871 39.432 317 180 6 13 324 14 323 1.72e-69 219
Msa0336520 MtrunA17_Chr5g0432331 39.879 331 183 10 1 325 32 352 1.83e-69 220
Msa0336520 MtrunA17_Chr2g0329641 37.538 325 190 6 10 325 15 335 2.51e-69 219
Msa0336520 MtrunA17_Chr1g0197411 35.494 324 199 6 10 325 9 330 3.64e-69 219
Msa0336520 MtrunA17_Chr2g0279061 45.560 259 134 4 70 325 12 266 1.01e-68 215
Msa0336520 MtrunA17_Chr7g0224371 40.940 298 164 6 30 325 35 322 2.44e-68 216
Msa0336520 MtrunA17_Chr3g0107881 39.506 324 181 9 9 325 9 324 3.74e-68 216
Msa0336520 MtrunA17_Chr6g0467161 38.462 312 176 7 20 325 35 336 1.29e-67 215
Msa0336520 MtrunA17_Chr3g0106901 39.812 319 180 6 9 325 15 323 3.46e-67 213
Msa0336520 MtrunA17_Chr5g0421411 40.000 280 157 9 54 325 9 285 4.10e-67 212
Msa0336520 MtrunA17_Chr3g0136751 40.125 319 185 4 9 325 8 322 1.00e-66 212
Msa0336520 MtrunA17_Chr2g0316481 36.858 331 176 5 24 322 74 403 2.12e-64 209
Msa0336520 MtrunA17_Chr2g0316791 37.160 331 175 5 24 322 74 403 3.94e-64 208
Msa0336520 MtrunA17_Chr2g0311251 36.637 333 177 4 24 324 9 339 9.95e-63 202
Msa0336520 MtrunA17_Chr6g0467121 39.803 304 165 8 26 325 74 363 3.00e-62 202
Msa0336520 MtrunA17_Chr2g0316191 36.446 332 177 5 24 322 74 404 3.63e-62 203
Msa0336520 MtrunA17_Chr2g0316831 36.254 331 178 5 24 322 110 439 5.40e-62 203
Msa0336520 MtrunA17_Chr2g0311241 33.244 373 176 4 24 324 58 429 5.97e-60 198
Msa0336520 MtrunA17_Chr6g0467251 35.526 304 183 7 26 326 36 329 3.53e-58 191
Msa0336520 MtrunA17_Chr6g0451571 35.806 310 188 8 22 325 30 334 3.28e-57 188
Msa0336520 MtrunA17_Chr1g0181511 36.601 306 183 5 24 325 25 323 2.83e-56 185
Msa0336520 MtrunA17_Chr4g0074851 34.906 318 194 6 13 325 19 328 5.56e-54 179
Msa0336520 MtrunA17_Chr1g0181431 34.641 306 189 5 24 325 25 323 5.68e-53 177
Msa0336520 MtrunA17_Chr5g0413051 34.628 309 193 6 24 325 71 377 8.32e-53 177
Msa0336520 MtrunA17_Chr4g0075241 32.248 307 195 5 25 325 28 327 4.13e-50 169
Msa0336520 MtrunA17_Chr1g0181481 34.641 306 189 5 24 325 25 323 1.03e-49 168
Msa0336520 MtrunA17_Chr4g0004591 31.348 319 159 5 26 324 77 355 3.21e-48 165
Msa0336520 MtrunA17_Chr2g0316811 38.750 240 123 4 24 240 48 286 4.00e-46 159
Msa0336520 MtrunA17_Chr5g0432401 34.030 335 160 10 1 324 1 285 2.23e-45 155
Msa0336520 MtrunA17_Chr2g0292281 43.868 212 105 5 116 325 17 216 3.69e-45 154
Msa0336520 MtrunA17_Chr2g0316141 35.417 288 135 7 72 326 11 280 9.53e-42 146
Msa0336520 MtrunA17_Chr2g0316181 35.417 288 135 7 72 326 11 280 9.53e-42 146
Msa0336520 MtrunA17_Chr3g0114461 38.071 197 112 4 130 325 5 192 1.86e-36 130
Msa0336520 MtrunA17_Chr3g0114491 47.009 117 60 2 17 131 9 125 6.71e-27 103
Msa0336520 MtrunA17_Chr1g0181491 47.273 110 56 2 24 132 10 118 1.22e-25 100
Msa0336520 MtrunA17_Chr5g0432321 40.800 125 65 3 145 269 17 132 8.65e-23 92.0
Msa0336520 MtrunA17_Chr7g0254181 44.231 104 55 1 87 190 22 122 2.15e-22 91.7
Msa0336520 MtrunA17_Chr6g0468731 58.209 67 26 1 65 131 22 86 3.11e-21 86.7
Msa0336520 MtrunA17_Chr1g0196191 56.164 73 31 1 61 132 20 92 1.37e-18 81.3
Msa0336520 MtrunA17_Chr7g0268491 43.373 83 45 1 243 325 17 97 2.14e-17 76.3
Msa0336520 MtrunA17_Chr4g0013811 48.649 74 38 0 134 207 5 78 9.03e-17 73.9
Msa0336520 MtrunA17_Chr7g0254171 39.252 107 60 2 71 176 3 105 1.96e-16 75.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0336520 AT1G05260.1 68.153 314 100 0 13 326 13 326 1.94e-164 461
Msa0336520 AT4G11290.1 68.038 316 99 1 12 325 11 326 3.12e-163 458
Msa0336520 AT3G21770.1 67.987 303 97 0 21 323 24 326 4.99e-158 445
Msa0336520 AT5G15180.1 54.268 328 145 4 1 325 4 329 8.28e-125 361
Msa0336520 AT3G01190.1 55.732 314 134 4 13 325 12 321 5.74e-119 346
Msa0336520 AT1G05240.1 50.993 302 144 4 26 325 26 325 4.35e-105 310
Msa0336520 AT1G05250.1 50.993 302 144 4 26 325 26 325 4.35e-105 310
Msa0336520 AT2G18150.1 46.844 301 155 5 29 326 39 337 1.40e-93 281
Msa0336520 AT4G36430.1 44.444 315 170 5 15 326 19 331 1.01e-91 276
Msa0336520 AT5G64120.1 45.485 299 157 5 27 325 36 328 2.64e-90 273
Msa0336520 AT2G39040.1 48.875 311 148 8 23 325 43 350 7.60e-90 273
Msa0336520 AT5G17820.1 42.724 323 175 4 3 325 1 313 2.45e-89 270
Msa0336520 AT5G14130.1 43.887 319 174 4 9 325 15 330 3.06e-89 270
Msa0336520 AT5G17820.2 42.901 324 175 4 2 325 53 366 7.06e-89 271
Msa0336520 AT3G03670.1 42.857 315 177 3 12 325 9 321 9.98e-89 269
Msa0336520 AT5G14130.2 43.887 319 174 4 9 325 56 371 1.24e-88 270
Msa0336520 AT5G66390.1 45.000 320 171 5 10 326 17 334 7.47e-88 267
Msa0336520 AT2G18140.1 44.333 300 162 5 30 326 39 336 1.67e-87 266
Msa0336520 AT2G41480.1 42.593 324 177 6 7 325 9 328 6.20e-87 264
Msa0336520 AT5G06730.1 40.979 327 183 6 7 325 10 334 2.58e-86 264
Msa0336520 AT5G39580.1 43.175 315 171 7 12 325 12 319 8.47e-86 261
Msa0336520 AT2G38390.1 43.425 327 175 8 7 325 9 333 1.01e-85 262
Msa0336520 AT3G50990.1 42.857 329 180 4 5 326 15 342 2.15e-85 261
Msa0336520 AT1G49570.1 44.262 305 163 6 24 323 46 348 1.51e-84 259
Msa0336520 AT5G06720.1 41.509 318 180 5 12 325 18 333 7.97e-84 256
Msa0336520 AT2G38380.1 42.813 327 177 8 7 325 9 333 1.73e-83 256
Msa0336520 AT5G51890.1 45.141 319 162 9 13 325 11 322 4.64e-82 252
Msa0336520 AT5G42180.1 42.188 320 167 8 12 324 8 316 4.99e-82 251
Msa0336520 AT1G77100.1 43.506 308 162 5 22 325 20 319 8.25e-81 248
Msa0336520 AT1G44970.1 43.910 312 169 5 18 325 37 346 4.93e-80 247
Msa0336520 AT3G32980.1 40.439 319 180 7 16 326 19 335 1.94e-79 246
Msa0336520 AT5G19890.1 41.615 322 176 7 10 326 14 328 7.12e-79 244
Msa0336520 AT4G08770.1 41.456 316 177 6 17 326 15 328 8.95e-79 244
Msa0336520 AT2G24800.1 41.639 305 171 4 24 325 29 329 2.97e-78 242
Msa0336520 AT3G49110.1 41.250 320 178 7 13 326 22 337 4.95e-78 243
Msa0336520 AT2G18980.1 41.159 328 183 6 3 325 1 323 5.75e-78 241
Msa0336520 AT3G49120.1 40.881 318 180 6 15 326 21 336 9.28e-78 242
Msa0336520 AT4G33420.1 41.139 316 172 7 12 325 22 325 3.10e-77 239
Msa0336520 AT4G26010.1 40.506 316 172 7 13 326 9 310 4.51e-77 238
Msa0336520 AT4G26010.2 40.061 327 178 8 2 326 28 338 6.84e-77 239
Msa0336520 AT4G25980.1 41.368 307 171 5 24 325 24 326 1.24e-76 238
Msa0336520 AT4G33420.2 41.139 316 172 7 12 325 69 372 1.84e-76 239
Msa0336520 AT5G58390.1 40.938 320 173 7 12 325 7 316 1.97e-76 237
Msa0336520 AT4G08780.1 41.158 311 175 6 22 326 20 328 3.11e-76 238
Msa0336520 AT5G64110.1 38.415 328 190 5 5 325 8 330 1.73e-75 235
Msa0336520 AT5G05340.1 40.523 306 171 5 23 325 27 324 2.00e-74 232
Msa0336520 AT5G64100.1 38.973 331 179 7 10 325 9 331 4.48e-74 231
Msa0336520 AT4G16270.1 40.594 303 173 6 26 325 50 348 3.35e-73 230
Msa0336520 AT1G71695.1 43.092 304 161 7 26 325 44 339 4.88e-73 230
Msa0336520 AT1G14550.1 40.373 322 178 8 10 325 8 321 5.06e-73 228
Msa0336520 AT1G14540.1 39.062 320 183 7 10 325 4 315 2.46e-72 226
Msa0336520 AT4G31760.1 41.026 312 168 8 21 325 24 326 3.46e-72 226
Msa0336520 AT5G19880.1 40.187 321 183 6 12 325 11 329 5.11e-72 226
Msa0336520 AT2G35380.1 36.873 339 196 6 1 325 1 335 5.11e-72 226
Msa0336520 AT5G58400.1 39.009 323 183 7 4 321 8 321 1.23e-71 225
Msa0336520 AT4G37530.1 40.645 310 175 6 22 325 23 329 8.29e-71 223
Msa0336520 AT5G22410.1 38.415 328 186 8 3 321 1 321 8.79e-71 223
Msa0336520 AT5G67400.1 38.365 318 189 5 13 325 14 329 2.38e-69 219
Msa0336520 AT4G33870.1 35.345 348 187 5 11 322 53 398 5.30e-69 221
Msa0336520 AT1G34510.1 37.730 326 185 8 3 326 1 310 9.69e-69 217
Msa0336520 AT3G49960.1 37.736 318 191 5 13 325 14 329 1.79e-68 217
Msa0336520 AT4G37520.1 39.610 308 177 6 24 325 25 329 2.63e-68 217
Msa0336520 AT2G34060.1 37.864 309 185 4 19 321 35 342 3.01e-68 217
Msa0336520 AT4G30170.1 38.562 306 179 5 24 325 25 325 4.78e-68 216
Msa0336520 AT1G68850.1 36.156 307 188 6 26 325 30 335 3.68e-67 214
Msa0336520 AT2G22420.1 37.539 317 190 7 12 325 8 319 4.34e-67 214
Msa0336520 AT4G37520.2 39.610 308 174 7 24 325 25 326 1.51e-66 212
Msa0336520 AT1G30870.1 39.604 303 174 5 26 326 51 346 2.30e-66 212
Msa0336520 AT5G24070.1 35.207 338 192 8 8 325 5 335 6.84e-64 206
Msa0336520 AT4G17690.1 37.705 305 177 7 26 325 26 322 3.60e-63 203
Msa0336520 AT5G47000.1 36.585 328 185 9 12 326 14 331 6.54e-62 200
Msa0336520 AT2G43480.1 35.556 315 192 5 17 325 26 335 9.29e-62 200
Msa0336520 AT4G37530.2 40.000 260 150 4 22 276 23 281 1.58e-60 195
Msa0336520 AT5G40150.1 36.013 311 190 4 18 325 24 328 1.44e-59 194
Msa0336520 AT1G24110.1 34.743 331 203 6 1 326 1 323 3.74e-59 193
Msa0336520 AT3G28200.1 35.599 309 187 6 21 325 16 316 4.17e-57 187
Msa0336520 AT4G21960.1 34.049 326 196 7 12 325 9 327 6.35e-55 182
Msa0336520 AT3G17070.1 33.882 304 195 5 26 325 38 339 2.62e-52 176
Msa0336520 AT2G35380.2 37.751 249 142 4 86 325 3 247 4.01e-51 170
Msa0336520 AT4G25980.2 49.405 168 83 2 24 191 69 234 2.31e-50 169
Msa0336520 AT5G39580.2 46.961 181 92 3 12 192 12 188 7.01e-50 166
Msa0336520 AT2G37130.1 33.550 307 192 6 24 325 28 327 4.12e-49 167
Msa0336520 AT2G37130.2 33.663 303 189 6 28 325 1 296 3.32e-48 164
Msa0336520 AT2G24800.2 45.181 166 89 1 24 189 29 192 2.27e-44 152
Msa0336520 AT3G17070.2 32.246 276 180 6 54 325 4 276 1.76e-39 140
Msa0336520 AT3G42570.1 37.168 113 69 2 81 191 37 149 1.02e-15 73.6

Find 67 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAAATCAATGGAGAAAA+TGG 0.079582 2_4:+55948299 Msa0336520:CDS
CCTCCAAATCTTACTGTTAG+AGG 0.255087 2_4:+55947377 Msa0336520:CDS
ATCAAATGTGTTTCGACTTC+CGG 0.258605 2_4:-55948142 None:intergenic
GAAATACTAGGATCCATTTA+AGG 0.260247 2_4:-55948731 None:intergenic
CTTGATTGGCAAAGAGAGTT+TGG 0.269943 2_4:-55947756 None:intergenic
ACTTTCATGATTGCTTTGTT+AGG 0.271511 2_4:+55947199 Msa0336520:CDS
TCTTACACTTGAATGTCTTT+AGG 0.278429 2_4:-55948083 None:intergenic
AACCAAGGTGCATCCTTAAA+TGG 0.288049 2_4:+55948718 Msa0336520:three_prime_UTR
GCAATGATTAGTTCAGCTTT+TGG 0.305474 2_4:-55947114 None:intergenic
GAAGGTTGGTTGGTTACATT+AGG 0.327799 2_4:+55948624 Msa0336520:three_prime_UTR
TCAAATGTGTTTCGACTTCC+GGG 0.337076 2_4:-55948141 None:intergenic
CTTTCATGATTGCTTTGTTA+GGG 0.352765 2_4:+55947200 Msa0336520:CDS
AGTTTGGAGGGTGGTGAAGT+TGG 0.356287 2_4:-55947740 None:intergenic
AAAGACTTAGTCCTCCTATC+TGG 0.364479 2_4:+55947790 Msa0336520:CDS
GGAAAGTTCCAACAGGTAGA+AGG 0.373285 2_4:+55947662 Msa0336520:CDS
GATTTCAGGGTGGTCCATAT+TGG 0.381350 2_4:+55947641 Msa0336520:intron
ATATATTATTGACTCTGCTT+TGG 0.382069 2_4:-55948596 None:intergenic
CCTGTTGGAACTTTCCAATA+TGG 0.384950 2_4:-55947655 None:intergenic
AAGCCTCTAACAGTAAGATT+TGG 0.388544 2_4:-55947380 None:intergenic
GTCAATAATATATGTGTAGA+AGG 0.401632 2_4:+55948606 Msa0336520:three_prime_UTR
AGTCGAAACACATTTGATCT+TGG 0.404166 2_4:+55948147 Msa0336520:CDS
CAGGGTCACAAGGTGTGATT+AGG 0.404815 2_4:+55948340 Msa0336520:CDS
CAATACCACAATAGTCGAAA+TGG 0.409754 2_4:+55948116 Msa0336520:CDS
CTTGTGACTCAATTCCTTCA+AGG 0.417393 2_4:+55948249 Msa0336520:CDS
AGGGTGGTGAAGTTGGAAAA+TGG 0.423456 2_4:-55947733 None:intergenic
GTTGGTTTGTTGAGTTCAAA+AGG 0.425359 2_4:-55947337 None:intergenic
AAGGTTGGTTGGTTACATTA+GGG 0.425873 2_4:+55948625 Msa0336520:three_prime_UTR
TTCCAGTAAAATTGTACAAA+CGG 0.430112 2_4:-55948017 None:intergenic
AAATCAGTGTAATTACTTCA+AGG 0.442898 2_4:+55947020 Msa0336520:CDS
CAAACTCTCTTTGCCAATCA+AGG 0.450028 2_4:+55947757 Msa0336520:CDS
TGCTGAATTTGCAAAATCAA+TGG 0.452311 2_4:+55948290 Msa0336520:CDS
TGTGGCTGCAATAGAGTCTC+TGG 0.459357 2_4:-55947486 None:intergenic
GCAAAATCAATGGAGAAAAT+GGG 0.466453 2_4:+55948300 Msa0336520:CDS
GGACAAGTTAAAGTTAAGAC+AGG 0.485701 2_4:+55948321 Msa0336520:CDS
CCTCTAACAGTAAGATTTGG+AGG 0.486565 2_4:-55947377 None:intergenic
TGGAGTCGTATCGAATTTGT+TGG 0.490287 2_4:+55947687 Msa0336520:CDS
ATAATATATGTGTAGAAGGT+TGG 0.490676 2_4:+55948610 Msa0336520:three_prime_UTR
CCATATTGGAAAGTTCCAAC+AGG 0.513974 2_4:+55947655 Msa0336520:CDS
TGAATGTAATAATACCAGAT+AGG 0.531919 2_4:-55947804 None:intergenic
CTTGTTGAAGCTGAATGCCC+TGG 0.535811 2_4:+55947428 Msa0336520:CDS
AGTCAAGTTGTCAAGAGAAG+AGG 0.538282 2_4:+55948177 Msa0336520:CDS
TATATGTGTAGAAGGTTGGT+TGG 0.540580 2_4:+55948614 Msa0336520:three_prime_UTR
GTGAAGTTGGAAAATGGAGC+AGG 0.550766 2_4:-55947727 None:intergenic
ACTCCATCCCTTCTACCTGT+TGG 0.553125 2_4:-55947670 None:intergenic
ACATAATGTACCACCAAACC+AGG 0.555806 2_4:-55948518 None:intergenic
GAAAGTTCCAACAGGTAGAA+GGG 0.557568 2_4:+55947663 Msa0336520:CDS
AACTAATGTATTGAAATACT+AGG 0.563169 2_4:-55948743 None:intergenic
GTTCCAACAGGTAGAAGGGA+TGG 0.566917 2_4:+55947667 Msa0336520:CDS
GATTGGCAAAGAGAGTTTGG+AGG 0.571052 2_4:-55947753 None:intergenic
ATTAATGCAGCAGCAAGTGA+TGG 0.574993 2_4:-55947168 None:intergenic
ATTGGCAAAGAGAGTTTGGA+GGG 0.582534 2_4:-55947752 None:intergenic
GGGGTCCATTTCGACTATTG+TGG 0.589268 2_4:-55948121 None:intergenic
GGCAAAGAGAGTTTGGAGGG+TGG 0.591559 2_4:-55947749 None:intergenic
GCATATTCACTATCAAGTGA+TGG 0.604475 2_4:-55948054 None:intergenic
TCAGCACAAGAAACAACACC+AGG 0.606055 2_4:-55947446 None:intergenic
ACAATAGTCGAAATGGACCC+CGG 0.608410 2_4:+55948123 Msa0336520:CDS
ACTCATGCTCAATTGCAGCT+AGG 0.609605 2_4:+55947072 Msa0336520:CDS
ATCCATTTAAGGATGCACCT+TGG 0.618571 2_4:-55948720 None:intergenic
CAGGGCATTCAGCTTCAACA+AGG 0.628010 2_4:-55947427 None:intergenic
ATGTAATAATACCAGATAGG+AGG 0.629799 2_4:-55947801 None:intergenic
CAGCAAGTGATGGAGCATTG+TGG 0.631408 2_4:-55947158 None:intergenic
AAAGTTAAGACAGGGTCACA+AGG 0.639191 2_4:+55948330 Msa0336520:CDS
ATGAGAAGTTCTCTAAACCA+AGG 0.647882 2_4:+55948703 Msa0336520:three_prime_UTR
TGTTGAGACACAACATGACA+TGG 0.650318 2_4:-55948439 None:intergenic
CAAATGTGTTTCGACTTCCG+GGG 0.706421 2_4:-55948140 None:intergenic
GACAAGTTAAAGTTAAGACA+GGG 0.715537 2_4:+55948322 Msa0336520:CDS
CAGCACAAGAAACAACACCA+GGG 0.760815 2_4:-55947445 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATACTTTCATTTCATTTT+TGG + chr2_4:55947249-55947268 Msa0336520:intron 15.0%
!!! TAATAATTTTAAGAACAAGT+GGG + chr2_4:55948471-55948490 Msa0336520:three_prime_UTR 15.0%
!!! TTATACTTTCATTTCATTTT+TGG + chr2_4:55947249-55947268 Msa0336520:intron 15.0%
!!! TAATAATTTTAAGAACAAGT+GGG + chr2_4:55948471-55948490 Msa0336520:three_prime_UTR 15.0%
!!! AACATTAAGCATTTTGATTT+AGG + chr2_4:55947298-55947317 Msa0336520:intron 20.0%
!!! ACATTAAGCATTTTGATTTA+GGG + chr2_4:55947299-55947318 Msa0336520:intron 20.0%
!!! ACCATGATATAAATTTTTTC+AGG + chr2_4:55947952-55947971 Msa0336520:intron 20.0%
!! ACCTGAAAAAATTTATATCA+TGG - chr2_4:55947956-55947975 None:intergenic 20.0%
!!! TTTATGTTGATTTGTGTTTT+TGG + chr2_4:55948397-55948416 Msa0336520:three_prime_UTR 20.0%
!!! TTATGTTGATTTGTGTTTTT+GGG + chr2_4:55948398-55948417 Msa0336520:three_prime_UTR 20.0%
!!! GTAATAATTTTAAGAACAAG+TGG + chr2_4:55948470-55948489 Msa0336520:three_prime_UTR 20.0%
!!! CAATTGTAATTTTTATTTCC+TGG + chr2_4:55948500-55948519 Msa0336520:three_prime_UTR 20.0%
!! AACTAATGTATTGAAATACT+AGG - chr2_4:55948746-55948765 None:intergenic 20.0%
!!! AACATTAAGCATTTTGATTT+AGG + chr2_4:55947298-55947317 Msa0336520:intron 20.0%
!!! ACATTAAGCATTTTGATTTA+GGG + chr2_4:55947299-55947318 Msa0336520:intron 20.0%
!!! ACCATGATATAAATTTTTTC+AGG + chr2_4:55947952-55947971 Msa0336520:intron 20.0%
!! ACCTGAAAAAATTTATATCA+TGG - chr2_4:55947956-55947975 None:intergenic 20.0%
!!! TTTATGTTGATTTGTGTTTT+TGG + chr2_4:55948397-55948416 Msa0336520:three_prime_UTR 20.0%
!!! TTATGTTGATTTGTGTTTTT+GGG + chr2_4:55948398-55948417 Msa0336520:three_prime_UTR 20.0%
!!! GTAATAATTTTAAGAACAAG+TGG + chr2_4:55948470-55948489 Msa0336520:three_prime_UTR 20.0%
!!! CAATTGTAATTTTTATTTCC+TGG + chr2_4:55948500-55948519 Msa0336520:three_prime_UTR 20.0%
!! AACTAATGTATTGAAATACT+AGG - chr2_4:55948746-55948765 None:intergenic 20.0%
! AAATCAGTGTAATTACTTCA+AGG + chr2_4:55947020-55947039 Msa0336520:CDS 25.0%
! ATTCTATCTTTAACAGACTA+AGG + chr2_4:55947520-55947539 Msa0336520:intron 25.0%
!! TTTTAAATCAAGTCCTTGAT+TGG - chr2_4:55947773-55947792 None:intergenic 25.0%
! TGAATGTAATAATACCAGAT+AGG - chr2_4:55947807-55947826 None:intergenic 25.0%
! TTCCAGTAAAATTGTACAAA+CGG - chr2_4:55948020-55948039 None:intergenic 25.0%
!! TTTGTACAATTTTACTGGAA+AGG + chr2_4:55948020-55948039 Msa0336520:CDS 25.0%
!! TTGTACAATTTTACTGGAAA+GGG + chr2_4:55948021-55948040 Msa0336520:CDS 25.0%
!!! GTAATTTTTATTTCCTGGTT+TGG + chr2_4:55948505-55948524 Msa0336520:three_prime_UTR 25.0%
!!! ATATATTATTGACTCTGCTT+TGG - chr2_4:55948599-55948618 None:intergenic 25.0%
! GTCAATAATATATGTGTAGA+AGG + chr2_4:55948606-55948625 Msa0336520:three_prime_UTR 25.0%
! ATAATATATGTGTAGAAGGT+TGG + chr2_4:55948610-55948629 Msa0336520:three_prime_UTR 25.0%
! AAATCAGTGTAATTACTTCA+AGG + chr2_4:55947020-55947039 Msa0336520:CDS 25.0%
! ATTCTATCTTTAACAGACTA+AGG + chr2_4:55947520-55947539 Msa0336520:intron 25.0%
!! TTTTAAATCAAGTCCTTGAT+TGG - chr2_4:55947773-55947792 None:intergenic 25.0%
! TGAATGTAATAATACCAGAT+AGG - chr2_4:55947807-55947826 None:intergenic 25.0%
! TTCCAGTAAAATTGTACAAA+CGG - chr2_4:55948020-55948039 None:intergenic 25.0%
!! TTTGTACAATTTTACTGGAA+AGG + chr2_4:55948020-55948039 Msa0336520:CDS 25.0%
!! TTGTACAATTTTACTGGAAA+GGG + chr2_4:55948021-55948040 Msa0336520:CDS 25.0%
!!! GTAATTTTTATTTCCTGGTT+TGG + chr2_4:55948505-55948524 Msa0336520:three_prime_UTR 25.0%
!!! ATATATTATTGACTCTGCTT+TGG - chr2_4:55948599-55948618 None:intergenic 25.0%
! GTCAATAATATATGTGTAGA+AGG + chr2_4:55948606-55948625 Msa0336520:three_prime_UTR 25.0%
! ATAATATATGTGTAGAAGGT+TGG + chr2_4:55948610-55948629 Msa0336520:three_prime_UTR 25.0%
! ACTTTCATGATTGCTTTGTT+AGG + chr2_4:55947199-55947218 Msa0336520:CDS 30.0%
! CTTTCATGATTGCTTTGTTA+GGG + chr2_4:55947200-55947219 Msa0336520:CDS 30.0%
!!! ATTTTGATTTAGGGATGTGA+TGG + chr2_4:55947308-55947327 Msa0336520:intron 30.0%
ATAGAATTGAGTACTTACTG+TGG - chr2_4:55947507-55947526 None:intergenic 30.0%
TTAAATAAGCCAATCCAAAC+AGG - chr2_4:55947546-55947565 None:intergenic 30.0%
AGCTTATCTACTGATACATT+TGG + chr2_4:55947610-55947629 Msa0336520:intron 30.0%
! ATTTGGTGATTTGTGATTTC+AGG + chr2_4:55947627-55947646 Msa0336520:intron 30.0%
! TTTGGTGATTTGTGATTTCA+GGG + chr2_4:55947628-55947647 Msa0336520:intron 30.0%
ATGTAATAATACCAGATAGG+AGG - chr2_4:55947804-55947823 None:intergenic 30.0%
TTTACCGACATAATTAGAGA+CGG + chr2_4:55947884-55947903 Msa0336520:intron 30.0%
! TTTTCCGTCTCTAATTATGT+CGG - chr2_4:55947891-55947910 None:intergenic 30.0%
! AACCGTTTGTACAATTTTAC+TGG + chr2_4:55948015-55948034 Msa0336520:CDS 30.0%
TCTTACACTTGAATGTCTTT+AGG - chr2_4:55948086-55948105 None:intergenic 30.0%
TGCTGAATTTGCAAAATCAA+TGG + chr2_4:55948290-55948309 Msa0336520:CDS 30.0%
TGCAAAATCAATGGAGAAAA+TGG + chr2_4:55948299-55948318 Msa0336520:CDS 30.0%
GCAAAATCAATGGAGAAAAT+GGG + chr2_4:55948300-55948319 Msa0336520:CDS 30.0%
GACAAGTTAAAGTTAAGACA+GGG + chr2_4:55948322-55948341 Msa0336520:CDS 30.0%
!!! TTGATTTGTGTTTTTGGGTT+TGG + chr2_4:55948403-55948422 Msa0336520:three_prime_UTR 30.0%
!!! ATTTTTATTTCCTGGTTTGG+TGG + chr2_4:55948508-55948527 Msa0336520:three_prime_UTR 30.0%
GAAATACTAGGATCCATTTA+AGG - chr2_4:55948734-55948753 None:intergenic 30.0%
! ACTTTCATGATTGCTTTGTT+AGG + chr2_4:55947199-55947218 Msa0336520:CDS 30.0%
! CTTTCATGATTGCTTTGTTA+GGG + chr2_4:55947200-55947219 Msa0336520:CDS 30.0%
!!! ATTTTGATTTAGGGATGTGA+TGG + chr2_4:55947308-55947327 Msa0336520:intron 30.0%
ATAGAATTGAGTACTTACTG+TGG - chr2_4:55947507-55947526 None:intergenic 30.0%
TTAAATAAGCCAATCCAAAC+AGG - chr2_4:55947546-55947565 None:intergenic 30.0%
AGCTTATCTACTGATACATT+TGG + chr2_4:55947610-55947629 Msa0336520:intron 30.0%
! ATTTGGTGATTTGTGATTTC+AGG + chr2_4:55947627-55947646 Msa0336520:intron 30.0%
! TTTGGTGATTTGTGATTTCA+GGG + chr2_4:55947628-55947647 Msa0336520:intron 30.0%
ATGTAATAATACCAGATAGG+AGG - chr2_4:55947804-55947823 None:intergenic 30.0%
TTTACCGACATAATTAGAGA+CGG + chr2_4:55947884-55947903 Msa0336520:intron 30.0%
! TTTTCCGTCTCTAATTATGT+CGG - chr2_4:55947891-55947910 None:intergenic 30.0%
! AACCGTTTGTACAATTTTAC+TGG + chr2_4:55948015-55948034 Msa0336520:CDS 30.0%
TCTTACACTTGAATGTCTTT+AGG - chr2_4:55948086-55948105 None:intergenic 30.0%
TGCTGAATTTGCAAAATCAA+TGG + chr2_4:55948290-55948309 Msa0336520:CDS 30.0%
TGCAAAATCAATGGAGAAAA+TGG + chr2_4:55948299-55948318 Msa0336520:CDS 30.0%
GCAAAATCAATGGAGAAAAT+GGG + chr2_4:55948300-55948319 Msa0336520:CDS 30.0%
GACAAGTTAAAGTTAAGACA+GGG + chr2_4:55948322-55948341 Msa0336520:CDS 30.0%
!!! TTGATTTGTGTTTTTGGGTT+TGG + chr2_4:55948403-55948422 Msa0336520:three_prime_UTR 30.0%
!!! ATTTTTATTTCCTGGTTTGG+TGG + chr2_4:55948508-55948527 Msa0336520:three_prime_UTR 30.0%
GAAATACTAGGATCCATTTA+AGG - chr2_4:55948734-55948753 None:intergenic 30.0%
!! GCAATGATTAGTTCAGCTTT+TGG - chr2_4:55947117-55947136 None:intergenic 35.0%
!! GTTGGTTTGTTGAGTTCAAA+AGG - chr2_4:55947340-55947359 None:intergenic 35.0%
!!! GAGCATTTTTTTCAGCTTGT+TGG - chr2_4:55947358-55947377 None:intergenic 35.0%
AAGCCTCTAACAGTAAGATT+TGG - chr2_4:55947383-55947402 None:intergenic 35.0%
GCATATTCACTATCAAGTGA+TGG - chr2_4:55948057-55948076 None:intergenic 35.0%
CAATACCACAATAGTCGAAA+TGG + chr2_4:55948116-55948135 Msa0336520:CDS 35.0%
ATCAAATGTGTTTCGACTTC+CGG - chr2_4:55948145-55948164 None:intergenic 35.0%
AGTCGAAACACATTTGATCT+TGG + chr2_4:55948147-55948166 Msa0336520:CDS 35.0%
!!! AATTTTCAAGTGAGCCTTGA+AGG - chr2_4:55948266-55948285 None:intergenic 35.0%
GGACAAGTTAAAGTTAAGAC+AGG + chr2_4:55948321-55948340 Msa0336520:CDS 35.0%
! TATATGTGTAGAAGGTTGGT+TGG + chr2_4:55948614-55948633 Msa0336520:three_prime_UTR 35.0%
! AAGGTTGGTTGGTTACATTA+GGG + chr2_4:55948625-55948644 Msa0336520:three_prime_UTR 35.0%
ATGAGAAGTTCTCTAAACCA+AGG + chr2_4:55948703-55948722 Msa0336520:three_prime_UTR 35.0%
!! GCAATGATTAGTTCAGCTTT+TGG - chr2_4:55947117-55947136 None:intergenic 35.0%
!! GTTGGTTTGTTGAGTTCAAA+AGG - chr2_4:55947340-55947359 None:intergenic 35.0%
!!! GAGCATTTTTTTCAGCTTGT+TGG - chr2_4:55947358-55947377 None:intergenic 35.0%
AAGCCTCTAACAGTAAGATT+TGG - chr2_4:55947383-55947402 None:intergenic 35.0%
GCATATTCACTATCAAGTGA+TGG - chr2_4:55948057-55948076 None:intergenic 35.0%
CAATACCACAATAGTCGAAA+TGG + chr2_4:55948116-55948135 Msa0336520:CDS 35.0%
ATCAAATGTGTTTCGACTTC+CGG - chr2_4:55948145-55948164 None:intergenic 35.0%
AGTCGAAACACATTTGATCT+TGG + chr2_4:55948147-55948166 Msa0336520:CDS 35.0%
!!! AATTTTCAAGTGAGCCTTGA+AGG - chr2_4:55948266-55948285 None:intergenic 35.0%
GGACAAGTTAAAGTTAAGAC+AGG + chr2_4:55948321-55948340 Msa0336520:CDS 35.0%
! TATATGTGTAGAAGGTTGGT+TGG + chr2_4:55948614-55948633 Msa0336520:three_prime_UTR 35.0%
! AAGGTTGGTTGGTTACATTA+GGG + chr2_4:55948625-55948644 Msa0336520:three_prime_UTR 35.0%
ATGAGAAGTTCTCTAAACCA+AGG + chr2_4:55948703-55948722 Msa0336520:three_prime_UTR 35.0%
! TTCAGCTTTTGGACAACTCT+TGG - chr2_4:55947106-55947125 None:intergenic 40.0%
ATTAATGCAGCAGCAAGTGA+TGG - chr2_4:55947171-55947190 None:intergenic 40.0%
CCTCTAACAGTAAGATTTGG+AGG - chr2_4:55947380-55947399 None:intergenic 40.0%
CCTCCAAATCTTACTGTTAG+AGG + chr2_4:55947377-55947396 Msa0336520:CDS 40.0%
TTAACAGACTAAGGCCTGTT+TGG + chr2_4:55947529-55947548 Msa0336520:intron 40.0%
CCTGTTGGAACTTTCCAATA+TGG - chr2_4:55947658-55947677 None:intergenic 40.0%
CCATATTGGAAAGTTCCAAC+AGG + chr2_4:55947655-55947674 Msa0336520:CDS 40.0%
GAAAGTTCCAACAGGTAGAA+GGG + chr2_4:55947663-55947682 Msa0336520:CDS 40.0%
TGGAGTCGTATCGAATTTGT+TGG + chr2_4:55947687-55947706 Msa0336520:CDS 40.0%
ATTGGCAAAGAGAGTTTGGA+GGG - chr2_4:55947755-55947774 None:intergenic 40.0%
CTTGATTGGCAAAGAGAGTT+TGG - chr2_4:55947759-55947778 None:intergenic 40.0%
CAAACTCTCTTTGCCAATCA+AGG + chr2_4:55947757-55947776 Msa0336520:CDS 40.0%
AAAGACTTAGTCCTCCTATC+TGG + chr2_4:55947790-55947809 Msa0336520:CDS 40.0%
!! GACGAAAGTGCTTAATGCTA+AGG - chr2_4:55947837-55947856 None:intergenic 40.0%
!!! TTTTCAGGTGCTCACACAAT+TGG + chr2_4:55947967-55947986 Msa0336520:intron 40.0%
TCAAATGTGTTTCGACTTCC+GGG - chr2_4:55948144-55948163 None:intergenic 40.0%
! AGTCAAGTTGTCAAGAGAAG+AGG + chr2_4:55948177-55948196 Msa0336520:CDS 40.0%
CTTGTGACTCAATTCCTTCA+AGG + chr2_4:55948249-55948268 Msa0336520:CDS 40.0%
AAAGTTAAGACAGGGTCACA+AGG + chr2_4:55948330-55948349 Msa0336520:CDS 40.0%
TGTTGAGACACAACATGACA+TGG - chr2_4:55948442-55948461 None:intergenic 40.0%
ACATAATGTACCACCAAACC+AGG - chr2_4:55948521-55948540 None:intergenic 40.0%
! GAAGGTTGGTTGGTTACATT+AGG + chr2_4:55948624-55948643 Msa0336520:three_prime_UTR 40.0%
AACCAAGGTGCATCCTTAAA+TGG + chr2_4:55948718-55948737 Msa0336520:three_prime_UTR 40.0%
ATCCATTTAAGGATGCACCT+TGG - chr2_4:55948723-55948742 None:intergenic 40.0%
! TTCAGCTTTTGGACAACTCT+TGG - chr2_4:55947106-55947125 None:intergenic 40.0%
ATTAATGCAGCAGCAAGTGA+TGG - chr2_4:55947171-55947190 None:intergenic 40.0%
CCTCTAACAGTAAGATTTGG+AGG - chr2_4:55947380-55947399 None:intergenic 40.0%
CCTCCAAATCTTACTGTTAG+AGG + chr2_4:55947377-55947396 Msa0336520:CDS 40.0%
TTAACAGACTAAGGCCTGTT+TGG + chr2_4:55947529-55947548 Msa0336520:intron 40.0%
CCTGTTGGAACTTTCCAATA+TGG - chr2_4:55947658-55947677 None:intergenic 40.0%
CCATATTGGAAAGTTCCAAC+AGG + chr2_4:55947655-55947674 Msa0336520:CDS 40.0%
GAAAGTTCCAACAGGTAGAA+GGG + chr2_4:55947663-55947682 Msa0336520:CDS 40.0%
TGGAGTCGTATCGAATTTGT+TGG + chr2_4:55947687-55947706 Msa0336520:CDS 40.0%
ATTGGCAAAGAGAGTTTGGA+GGG - chr2_4:55947755-55947774 None:intergenic 40.0%
CTTGATTGGCAAAGAGAGTT+TGG - chr2_4:55947759-55947778 None:intergenic 40.0%
CAAACTCTCTTTGCCAATCA+AGG + chr2_4:55947757-55947776 Msa0336520:CDS 40.0%
AAAGACTTAGTCCTCCTATC+TGG + chr2_4:55947790-55947809 Msa0336520:CDS 40.0%
!! GACGAAAGTGCTTAATGCTA+AGG - chr2_4:55947837-55947856 None:intergenic 40.0%
!!! TTTTCAGGTGCTCACACAAT+TGG + chr2_4:55947967-55947986 Msa0336520:intron 40.0%
TCAAATGTGTTTCGACTTCC+GGG - chr2_4:55948144-55948163 None:intergenic 40.0%
! AGTCAAGTTGTCAAGAGAAG+AGG + chr2_4:55948177-55948196 Msa0336520:CDS 40.0%
CTTGTGACTCAATTCCTTCA+AGG + chr2_4:55948249-55948268 Msa0336520:CDS 40.0%
AAAGTTAAGACAGGGTCACA+AGG + chr2_4:55948330-55948349 Msa0336520:CDS 40.0%
TGTTGAGACACAACATGACA+TGG - chr2_4:55948442-55948461 None:intergenic 40.0%
ACATAATGTACCACCAAACC+AGG - chr2_4:55948521-55948540 None:intergenic 40.0%
! GAAGGTTGGTTGGTTACATT+AGG + chr2_4:55948624-55948643 Msa0336520:three_prime_UTR 40.0%
AACCAAGGTGCATCCTTAAA+TGG + chr2_4:55948718-55948737 Msa0336520:three_prime_UTR 40.0%
ATCCATTTAAGGATGCACCT+TGG - chr2_4:55948723-55948742 None:intergenic 40.0%
ACTCATGCTCAATTGCAGCT+AGG + chr2_4:55947072-55947091 Msa0336520:CDS 45.0%
CAGCACAAGAAACAACACCA+GGG - chr2_4:55947448-55947467 None:intergenic 45.0%
TCAGCACAAGAAACAACACC+AGG - chr2_4:55947449-55947468 None:intergenic 45.0%
AGACTAAGGCCTGTTTGGAT+TGG + chr2_4:55947534-55947553 Msa0336520:intron 45.0%
! GGTGATTTGTGATTTCAGGG+TGG + chr2_4:55947631-55947650 Msa0336520:intron 45.0%
GATTTCAGGGTGGTCCATAT+TGG + chr2_4:55947641-55947660 Msa0336520:intron 45.0%
GGAAAGTTCCAACAGGTAGA+AGG + chr2_4:55947662-55947681 Msa0336520:CDS 45.0%
GTGAAGTTGGAAAATGGAGC+AGG - chr2_4:55947730-55947749 None:intergenic 45.0%
AGGGTGGTGAAGTTGGAAAA+TGG - chr2_4:55947736-55947755 None:intergenic 45.0%
GATTGGCAAAGAGAGTTTGG+AGG - chr2_4:55947756-55947775 None:intergenic 45.0%
ACAATAGTCGAAATGGACCC+CGG + chr2_4:55948123-55948142 Msa0336520:CDS 45.0%
CAAATGTGTTTCGACTTCCG+GGG - chr2_4:55948143-55948162 None:intergenic 45.0%
ACTCATGCTCAATTGCAGCT+AGG + chr2_4:55947072-55947091 Msa0336520:CDS 45.0%
CAGCACAAGAAACAACACCA+GGG - chr2_4:55947448-55947467 None:intergenic 45.0%
TCAGCACAAGAAACAACACC+AGG - chr2_4:55947449-55947468 None:intergenic 45.0%
AGACTAAGGCCTGTTTGGAT+TGG + chr2_4:55947534-55947553 Msa0336520:intron 45.0%
! GGTGATTTGTGATTTCAGGG+TGG + chr2_4:55947631-55947650 Msa0336520:intron 45.0%
GATTTCAGGGTGGTCCATAT+TGG + chr2_4:55947641-55947660 Msa0336520:intron 45.0%
GGAAAGTTCCAACAGGTAGA+AGG + chr2_4:55947662-55947681 Msa0336520:CDS 45.0%
GTGAAGTTGGAAAATGGAGC+AGG - chr2_4:55947730-55947749 None:intergenic 45.0%
AGGGTGGTGAAGTTGGAAAA+TGG - chr2_4:55947736-55947755 None:intergenic 45.0%
GATTGGCAAAGAGAGTTTGG+AGG - chr2_4:55947756-55947775 None:intergenic 45.0%
ACAATAGTCGAAATGGACCC+CGG + chr2_4:55948123-55948142 Msa0336520:CDS 45.0%
CAAATGTGTTTCGACTTCCG+GGG - chr2_4:55948143-55948162 None:intergenic 45.0%
!! CAGCAAGTGATGGAGCATTG+TGG - chr2_4:55947161-55947180 None:intergenic 50.0%
! CAGGGCATTCAGCTTCAACA+AGG - chr2_4:55947430-55947449 None:intergenic 50.0%
CTTGTTGAAGCTGAATGCCC+TGG + chr2_4:55947428-55947447 Msa0336520:CDS 50.0%
TGTGGCTGCAATAGAGTCTC+TGG - chr2_4:55947489-55947508 None:intergenic 50.0%
GTTCCAACAGGTAGAAGGGA+TGG + chr2_4:55947667-55947686 Msa0336520:CDS 50.0%
ACTCCATCCCTTCTACCTGT+TGG - chr2_4:55947673-55947692 None:intergenic 50.0%
AGTTTGGAGGGTGGTGAAGT+TGG - chr2_4:55947743-55947762 None:intergenic 50.0%
GGGGTCCATTTCGACTATTG+TGG - chr2_4:55948124-55948143 None:intergenic 50.0%
CAGGGTCACAAGGTGTGATT+AGG + chr2_4:55948340-55948359 Msa0336520:CDS 50.0%
!! CAGCAAGTGATGGAGCATTG+TGG - chr2_4:55947161-55947180 None:intergenic 50.0%
! CAGGGCATTCAGCTTCAACA+AGG - chr2_4:55947430-55947449 None:intergenic 50.0%
CTTGTTGAAGCTGAATGCCC+TGG + chr2_4:55947428-55947447 Msa0336520:CDS 50.0%
TGTGGCTGCAATAGAGTCTC+TGG - chr2_4:55947489-55947508 None:intergenic 50.0%
GTTCCAACAGGTAGAAGGGA+TGG + chr2_4:55947667-55947686 Msa0336520:CDS 50.0%
ACTCCATCCCTTCTACCTGT+TGG - chr2_4:55947673-55947692 None:intergenic 50.0%
AGTTTGGAGGGTGGTGAAGT+TGG - chr2_4:55947743-55947762 None:intergenic 50.0%
GGGGTCCATTTCGACTATTG+TGG - chr2_4:55948124-55948143 None:intergenic 50.0%
CAGGGTCACAAGGTGTGATT+AGG + chr2_4:55948340-55948359 Msa0336520:CDS 50.0%
GGCAAAGAGAGTTTGGAGGG+TGG - chr2_4:55947752-55947771 None:intergenic 55.0%
GGCAAAGAGAGTTTGGAGGG+TGG - chr2_4:55947752-55947771 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 55946943 55948773 55946943 ID=Msa0336520;Name=Msa0336520
chr2_4 mRNA 55946943 55948773 55946943 ID=Msa0336520-mRNA-1;Parent=Msa0336520;Name=Msa0336520-mRNA-1;_AED=0.08;_eAED=0.08;_QI=66|1|1|1|1|1|4|384|326
chr2_4 exon 55946943 55947221 55946943 ID=Msa0336520-mRNA-1:exon:17018;Parent=Msa0336520-mRNA-1
chr2_4 exon 55947320 55947508 55947320 ID=Msa0336520-mRNA-1:exon:17019;Parent=Msa0336520-mRNA-1
chr2_4 exon 55947649 55947811 55947649 ID=Msa0336520-mRNA-1:exon:17020;Parent=Msa0336520-mRNA-1
chr2_4 exon 55947974 55948773 55947974 ID=Msa0336520-mRNA-1:exon:17021;Parent=Msa0336520-mRNA-1
chr2_4 five_prime_UTR 55946943 55947008 55946943 ID=Msa0336520-mRNA-1:five_prime_utr;Parent=Msa0336520-mRNA-1
chr2_4 CDS 55947009 55947221 55947009 ID=Msa0336520-mRNA-1:cds;Parent=Msa0336520-mRNA-1
chr2_4 CDS 55947320 55947508 55947320 ID=Msa0336520-mRNA-1:cds;Parent=Msa0336520-mRNA-1
chr2_4 CDS 55947649 55947811 55947649 ID=Msa0336520-mRNA-1:cds;Parent=Msa0336520-mRNA-1
chr2_4 CDS 55947974 55948389 55947974 ID=Msa0336520-mRNA-1:cds;Parent=Msa0336520-mRNA-1
chr2_4 three_prime_UTR 55948390 55948773 55948390 ID=Msa0336520-mRNA-1:three_prime_utr;Parent=Msa0336520-mRNA-1
Gene Sequence

>Msa0336520

ATGAAAATGAGAAATCAGTGTAATTACTTCAAGGTTTTGATTCTTTGTATTTTAGCAGCATCAACTCATGCTCAATTGCAGCTAGGATTTTATACCAAGAGTTGTCCAAAAGCTGAACTAATCATTGCAAACTTTGTTCATGAACATATCCACAATGCTCCATCACTTGCTGCTGCATTAATAAGAATGCACTTTCATGATTGCTTTGTTAGGGGATGTGATGGATCAGTCCTTTTGAACTCAACAAACCAACAAGCTGAAAAAAATGCTCCTCCAAATCTTACTGTTAGAGGCTTTGACTTCATTGACAGAATAAAGAGCCTTGTTGAAGCTGAATGCCCTGGTGTTGTTTCTTGTGCTGATATCATAGCTTTATCTGCCAGAGACTCTATTGCAGCCACAGGTGGTCCATATTGGAAAGTTCCAACAGGTAGAAGGGATGGAGTCGTATCGAATTTGTTGGAAGCAAATCAAAACATTCCTGCTCCATTTTCCAACTTCACCACCCTCCAAACTCTCTTTGCCAATCAAGGACTTGATTTAAAAGACTTAGTCCTCCTATCTGGTGCTCACACAATTGGTATCTCACTTTGCACATCATTTTCAAACCGTTTGTACAATTTTACTGGAAAGGGTGATCAAGATCCATCACTTGATAGTGAATATGCACAAAACCTAAAGACATTCAAGTGTAAGAACATCAATGACAATACCACAATAGTCGAAATGGACCCCGGAAGTCGAAACACATTTGATCTTGGTTACTATAGTCAAGTTGTCAAGAGAAGAGGTTTGTTTCAGTCTGATTCTGCATTGTTGACAAATTCAGTTACAAAAGCTCTTGTGACTCAATTCCTTCAAGGCTCACTTGAAAATTTCTATGCTGAATTTGCAAAATCAATGGAGAAAATGGGACAAGTTAAAGTTAAGACAGGGTCACAAGGTGTGATTAGGAAGCATTGTGCACTTGTAAATAACTAA
Protein sequence

>Msa0336520

MKMRNQCNYFKVLILCILAASTHAQLQLGFYTKSCPKAELIIANFVHEHIHNAPSLAAALIRMHFHDCFVRGCDGSVLLNSTNQQAEKNAPPNLTVRGFDFIDRIKSLVEAECPGVVSCADIIALSARDSIAATGGPYWKVPTGRRDGVVSNLLEANQNIPAPFSNFTTLQTLFANQGLDLKDLVLLSGAHTIGISLCTSFSNRLYNFTGKGDQDPSLDSEYAQNLKTFKCKNINDNTTIVEMDPGSRNTFDLGYYSQVVKRRGLFQSDSALLTNSVTKALVTQFLQGSLENFYAEFAKSMEKMGQVKVKTGSQGVIRKHCALVNN*