AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1074900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1074900 MtrunA17_Chr7g0258061 98.909 275 3 0 1 275 1 275 0.0 556
Msa1074900 MtrunA17_Chr1g0173931 76.426 263 61 1 10 271 26 288 9.21e-140 395
Msa1074900 MtrunA17_Chr3g0087741 56.716 67 29 0 21 87 88 154 8.10e-16 77.0
Msa1074900 MtrunA17_Chr7g0269841 50.746 67 33 0 21 87 25 91 3.97e-15 74.3
Msa1074900 MtrunA17_Chr2g0295821 44.898 98 47 4 24 119 106 198 1.67e-14 72.8
Msa1074900 MtrunA17_Chr1g0209551 43.750 96 47 3 24 112 18 113 2.62e-14 72.4
Msa1074900 MtrunA17_Chr7g0271891 52.308 65 27 2 24 84 18 82 3.61e-14 68.9
Msa1074900 MtrunA17_Chr4g0010781 53.731 67 31 0 21 87 85 151 4.65e-14 71.6
Msa1074900 MtrunA17_Chr8g0344721 37.273 110 59 3 16 119 4 109 8.99e-14 68.9
Msa1074900 MtrunA17_Chr4g0040501 47.692 65 33 1 24 87 6 70 1.19e-12 67.0
Msa1074900 MtrunA17_Chr7g0242951 53.125 64 29 1 24 87 29 91 1.42e-12 67.4
Msa1074900 MtrunA17_Chr2g0282741 42.105 76 40 2 24 98 6 78 2.01e-12 66.2
Msa1074900 MtrunA17_Chr8g0352451 51.562 64 31 0 24 87 74 137 2.38e-12 66.6
Msa1074900 MtrunA17_Chr3g0138471 43.077 65 36 1 24 87 6 70 2.67e-12 65.9
Msa1074900 MtrunA17_Chr2g0295831 34.783 115 64 3 24 136 112 217 3.31e-12 64.7
Msa1074900 MtrunA17_Chr5g0414471 36.111 108 62 2 12 112 15 122 3.43e-12 65.9
Msa1074900 MtrunA17_Chr5g0393371 50.000 64 32 0 24 87 8 71 4.70e-12 65.5
Msa1074900 MtrunA17_Chr1g0159491 42.188 64 37 0 24 87 8 71 6.00e-12 60.5
Msa1074900 MtrunA17_Chr2g0282761 46.154 65 34 1 24 87 6 70 6.31e-12 65.1
Msa1074900 MtrunA17_Chr2g0324921 44.595 74 37 2 24 96 6 76 7.81e-12 64.7
Msa1074900 MtrunA17_Chr6g0478651 50.000 66 28 2 24 87 70 132 1.62e-11 64.3
Msa1074900 MtrunA17_Chr4g0006391 44.615 65 35 1 24 87 6 70 1.89e-11 63.5
Msa1074900 MtrunA17_Chr3g0123861 46.875 64 33 1 24 87 84 146 6.25e-11 62.4
Msa1074900 MtrunA17_Chr8g0334811 33.133 166 91 6 1 158 1 154 6.32e-11 62.4
Msa1074900 MtrunA17_Chr5g0426951 45.455 66 36 0 20 85 81 146 7.58e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1074900 AT3G12170.1 73.251 243 64 1 20 261 9 251 1.05e-129 369
Msa1074900 AT3G12170.2 73.251 243 64 1 20 261 45 287 1.01e-128 367
Msa1074900 AT5G06910.1 64.894 282 87 4 1 270 1 282 4.86e-118 340
Msa1074900 AT5G48030.1 58.209 67 28 0 21 87 93 159 1.29e-15 76.6
Msa1074900 AT1G59980.2 40.625 96 50 2 24 112 25 120 5.77e-15 74.3
Msa1074900 AT1G59980.1 40.625 96 50 2 24 112 25 120 6.11e-15 74.7
Msa1074900 AT1G56300.1 47.826 69 32 2 20 84 11 79 1.41e-14 70.1
Msa1074900 AT1G56300.2 47.826 69 32 2 20 84 11 79 1.48e-14 68.9
Msa1074900 AT5G03160.1 50.685 73 35 1 20 91 368 440 2.46e-14 73.2
Msa1074900 AT3G14200.1 49.351 77 36 1 20 93 10 86 3.25e-14 70.9
Msa1074900 AT3G62600.1 50.746 67 33 0 21 87 25 91 4.47e-14 71.6
Msa1074900 AT4G39150.3 53.125 64 30 0 24 87 8 71 4.80e-14 71.6
Msa1074900 AT4G39150.1 53.125 64 30 0 24 87 8 71 4.80e-14 71.6
Msa1074900 AT4G39150.2 53.125 64 30 0 24 87 8 71 4.80e-14 71.6
Msa1074900 AT5G01390.3 46.970 66 34 1 23 87 5 70 2.60e-13 68.2
Msa1074900 AT2G21510.2 50.000 64 32 0 24 87 8 71 3.40e-13 69.3
Msa1074900 AT2G21510.4 50.000 64 32 0 24 87 8 71 3.40e-13 69.3
Msa1074900 AT2G21510.3 50.000 64 32 0 24 87 8 71 3.45e-13 68.9
Msa1074900 AT2G21510.1 50.000 64 32 0 24 87 8 71 3.45e-13 68.9
Msa1074900 AT5G01390.4 46.970 66 34 1 23 87 5 70 3.49e-13 67.8
Msa1074900 AT2G21510.5 50.000 64 32 0 24 87 8 71 4.16e-13 68.6
Msa1074900 AT1G68370.1 42.708 96 48 3 24 112 19 114 4.36e-13 68.9
Msa1074900 AT5G01390.2 46.970 66 34 1 23 87 5 70 5.06e-13 68.2
Msa1074900 AT5G49060.2 48.611 72 32 2 24 93 101 169 5.09e-13 68.6
Msa1074900 AT5G49060.1 48.611 72 32 2 24 93 101 169 5.09e-13 68.6
Msa1074900 AT5G01390.1 46.970 66 34 1 23 87 5 70 7.63e-13 68.2
Msa1074900 AT4G28480.2 41.975 81 43 2 24 103 6 83 1.34e-12 67.0
Msa1074900 AT4G28480.1 41.975 81 43 2 24 103 6 83 1.58e-12 67.0
Msa1074900 AT1G77020.1 51.562 64 31 0 24 87 8 71 1.90e-12 67.0
Msa1074900 AT1G21080.3 37.931 87 51 1 23 109 7 90 2.22e-12 67.0
Msa1074900 AT1G21080.1 37.931 87 51 1 23 109 7 90 2.25e-12 67.0
Msa1074900 AT3G08910.1 46.154 65 34 1 24 87 6 70 3.41e-12 65.9
Msa1074900 AT1G76700.1 48.438 64 33 0 24 87 8 71 4.78e-12 65.9
Msa1074900 AT5G16650.1 40.789 76 45 0 13 88 2 77 7.87e-12 61.6
Msa1074900 AT2G20560.1 36.792 106 61 3 24 128 6 106 9.67e-12 64.7
Msa1074900 AT5G25530.2 44.615 65 35 1 24 87 6 70 1.12e-11 64.7
Msa1074900 AT5G16650.2 40.789 76 45 0 13 88 2 77 2.57e-11 61.2
Msa1074900 AT1G80030.4 50.000 66 28 2 24 87 77 139 2.72e-11 63.9
Msa1074900 AT1G80030.2 50.000 66 28 2 24 87 77 139 2.85e-11 63.9
Msa1074900 AT1G80030.3 50.000 66 28 2 24 87 77 139 2.85e-11 63.9
Msa1074900 AT1G80030.1 50.000 66 28 2 24 87 77 139 2.85e-11 63.9
Msa1074900 AT4G39960.1 39.560 91 50 3 23 109 86 175 3.81e-11 63.5
Msa1074900 AT4G39960.2 39.560 91 50 3 23 109 86 175 3.81e-11 63.5
Msa1074900 AT3G08970.1 51.562 64 30 1 24 87 29 91 3.97e-11 63.5
Msa1074900 AT3G08970.2 51.562 64 30 1 24 87 29 91 3.97e-11 63.5
Msa1074900 AT1G59725.1 42.424 66 36 1 24 87 6 71 6.31e-11 62.4
Msa1074900 AT2G22360.1 48.438 64 32 1 24 87 88 150 7.49e-11 62.4

Find 61 sgRNAs with CRISPR-Local

Find 195 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTTGCCTTCCTCTTTAA+AGG 0.137096 7_2:+72970885 None:intergenic
ATACTTCCTTAGCCCATTTC+TGG 0.179895 7_2:+72970931 None:intergenic
CCCGCTATAATTTACGATTC+AGG 0.236137 7_2:+72973763 None:intergenic
TAATTCTGCAGGAGAATTAA+AGG 0.256912 7_2:-72970967 Msa1074900:intron
AAAGAAGGCTTATTACAAAT+TGG 0.280754 7_2:-72972809 Msa1074900:CDS
ACACAGAGAGATTTGTTTGA+TGG 0.322319 7_2:+72973642 None:intergenic
CAACAAAAGCCTACCAGAAA+TGG 0.329929 7_2:-72970944 Msa1074900:CDS
AATTCCTCTTCAGAGGGTTC+TGG 0.332420 7_2:+72970664 None:intergenic
TCATCACCAGGATTCTTATC+TGG 0.362396 7_2:+72972772 None:intergenic
ACTGACCTTTCCTCTCATTT+CGG 0.368205 7_2:+72970737 None:intergenic
TAAAGGACTTGTGGGTGGTT+TGG 0.373974 7_2:+72970902 None:intergenic
TTCCTCTTTAAAGGACTTGT+GGG 0.398805 7_2:+72970894 None:intergenic
TTTCTCTTCGTCTCCAAGAA+TGG 0.400542 7_2:+72972603 None:intergenic
ACTTGACTCACACCGATTCA+AGG 0.428801 7_2:-72971588 Msa1074900:CDS
TAACGGCGGGAAAAGAATAA+AGG 0.432023 7_2:-72973792 None:intergenic
CTTCCTCTTTAAAGGACTTG+TGG 0.442578 7_2:+72970893 None:intergenic
ATCTTCAATTTCTTCATCAT+CGG 0.442588 7_2:+72973586 None:intergenic
TTCTTGGAGACGAAGAGAAA+CGG 0.455460 7_2:-72972600 Msa1074900:CDS
GGTTCTTGGGTTGGAGAAAA+CGG 0.460667 7_2:-72972848 Msa1074900:CDS
TCTTGGAGACGAAGAGAAAC+GGG 0.461614 7_2:-72972599 Msa1074900:CDS
GCGTCTCTAGTATCAAAGTA+TGG 0.472145 7_2:-72970700 Msa1074900:CDS
TGGCGCCGAGGAAGAAAACT+AGG 0.485201 7_2:-72973613 Msa1074900:CDS
AACAAAAGCCTACCAGAAAT+GGG 0.487122 7_2:-72970943 Msa1074900:CDS
TTTCAAAACAATGTACAAGA+AGG 0.494913 7_2:-72971923 Msa1074900:intron
TCATTTCTGCGGATCTACTC+TGG 0.504619 7_2:-72970470 Msa1074900:three_prime_UTR
TATGTGCAATGTAGTGTGAC+TGG 0.506719 7_2:-72970437 Msa1074900:three_prime_UTR
CATCAAGAATGTCCTTGAAT+CGG 0.509603 7_2:+72971576 None:intergenic
CTTCTTTATTTCTTGTTGAG+AGG 0.513111 7_2:+72972825 None:intergenic
CTCTTTAAAGGACTTGTGGG+TGG 0.519289 7_2:+72970897 None:intergenic
AGTACAAGGGGAATATGAAA+AGG 0.520113 7_2:-72971731 Msa1074900:intron
CTTGATGAGGCTATAGCTGC+TGG 0.521762 7_2:-72971560 Msa1074900:intron
CACCCACAAGTCCTTTAAAG+AGG 0.526019 7_2:-72970896 Msa1074900:CDS
CTCCATCCAGATAAGAATCC+TGG 0.528887 7_2:-72972778 Msa1074900:CDS
AGCTTCAAATTCCTCTTCAG+AGG 0.534350 7_2:+72970657 None:intergenic
CACCAGGATTCTTATCTGGA+TGG 0.539771 7_2:+72972776 None:intergenic
GGAGTTTGAAGCAAACTACC+GGG 0.541480 7_2:-72971796 Msa1074900:CDS
CCTGAATCGTAAATTATAGC+GGG 0.543962 7_2:-72973763 Msa1074900:five_prime_UTR
CACAAGTCCTTTAAAGAGGA+AGG 0.544290 7_2:-72970892 Msa1074900:CDS
GCTTCAAATTCCTCTTCAGA+GGG 0.547917 7_2:+72970658 None:intergenic
ACCTCAAAAGACTCTCTACC+AGG 0.549839 7_2:-72973561 Msa1074900:intron
AGGAGTTTGAAGCAAACTAC+CGG 0.550523 7_2:-72971797 Msa1074900:CDS
ACATTTGATTACTACATGAA+AGG 0.552769 7_2:+72970508 None:intergenic
GTAATCAAATGTTAGTGTAA+TGG 0.563971 7_2:-72970497 Msa1074900:three_prime_UTR
TTCCTTAGCCCATTTCTGGT+AGG 0.565926 7_2:+72970935 None:intergenic
TCTGTTAATCAGGATCTGGC+AGG 0.566964 7_2:-72971970 Msa1074900:intron
GTAATGGTTGTTCATTTCTG+CGG 0.569247 7_2:-72970481 Msa1074900:three_prime_UTR
CTTATTACAAATTGGCATTG+CGG 0.571383 7_2:-72972801 Msa1074900:CDS
AGCCTACCAGAAATGGGCTA+AGG 0.571998 7_2:-72970937 Msa1074900:CDS
CTCTCAACAAGAAATAAAGA+AGG 0.577556 7_2:-72972824 Msa1074900:CDS
GGTCACTGAAGCTGATATTG+AGG 0.586002 7_2:-72971817 Msa1074900:CDS
CGGGCTCTCTATGATCAGAC+TGG 0.592329 7_2:-72972580 Msa1074900:CDS
TTGTGTGAAGTGTGAGAACA+TGG 0.609468 7_2:-72970539 Msa1074900:three_prime_UTR
TATCACAACGCCGAAATGAG+AGG 0.612937 7_2:-72970747 Msa1074900:CDS
ACCTGAATCGTAAATTATAG+CGG 0.612965 7_2:-72973764 Msa1074900:five_prime_UTR
TATGCCAGAACCCTCTGAAG+AGG 0.616007 7_2:-72970668 Msa1074900:CDS
ATTCAAGGACATTCTTGATG+AGG 0.621008 7_2:-72971573 Msa1074900:CDS
AGATAAGAATCCTGGTGATG+AGG 0.625604 7_2:-72972770 Msa1074900:intron
CAACGCCGAAATGAGAGGAA+AGG 0.636406 7_2:-72970742 Msa1074900:CDS
TCTCTAGTATCAAAGTATGG+TGG 0.654748 7_2:-72970697 Msa1074900:CDS
GGCGCCGAGGAAGAAAACTA+GGG 0.675011 7_2:-72973612 Msa1074900:CDS
GAGTTTGAAGCAAACTACCG+GGG 0.707683 7_2:-72971795 Msa1074900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTATTATTTGTTTGT+TGG - chr7_2:72971421-72971440 Msa1074900:intron 10.0%
!!! ATTTTTAAACAAAAAGTTTG+TGG + chr7_2:72970396-72970415 None:intergenic 15.0%
!!! TGCTTAAATTTATTATTTTG+CGG - chr7_2:72970985-72971004 Msa1074900:intron 15.0%
!!! AATTTAAGAGTATTAATTGT+TGG + chr7_2:72972990-72973009 None:intergenic 15.0%
!! AACAATTAATACTCTTAAAT+TGG - chr7_2:72972989-72973008 Msa1074900:intron 15.0%
!!! GTCTGTTAAATTTTATTTGA+GGG - chr7_2:72971717-72971736 Msa1074900:intron 20.0%
!! ATCAGAATATAGGAATATAA+TGG - chr7_2:72971759-72971778 Msa1074900:CDS 20.0%
!!! AAGAAAGCATTATTAATTTG+TGG - chr7_2:72972421-72972440 Msa1074900:intron 20.0%
!!! CCATAGAAAAGTATTTATAA+TGG + chr7_2:72973098-72973117 None:intergenic 20.0%
!!! CCATTATAAATACTTTTCTA+TGG - chr7_2:72973095-72973114 Msa1074900:intron 20.0%
!!! TTAATTGATTTACTCTGTAA+TGG - chr7_2:72973295-72973314 Msa1074900:intron 20.0%
! ATCTTCAATTTCTTCATCAT+CGG + chr7_2:72970545-72970564 None:intergenic 25.0%
! AATACAAACTTTGTTCAACA+TGG + chr7_2:72970767-72970786 None:intergenic 25.0%
!!! TTGTATTTTTGTGTGTGTTA+AGG - chr7_2:72970780-72970799 Msa1074900:CDS 25.0%
!! TTGATCTGTGAAATTTTCAA+TGG - chr7_2:72970888-72970907 Msa1074900:CDS 25.0%
!! TTGGATCTTTTGTAATATCT+TGG - chr7_2:72971016-72971035 Msa1074900:intron 25.0%
!!! TGGTTAAACCTTTTTTTCAA+TGG - chr7_2:72971136-72971155 Msa1074900:intron 25.0%
! CAAATGATCCATTGAAAAAA+AGG + chr7_2:72971147-72971166 None:intergenic 25.0%
!!! CTTTTTTTCAATGGATCATT+TGG - chr7_2:72971145-72971164 Msa1074900:intron 25.0%
!!! GTCAAGAATTATTTTTGTTG+AGG + chr7_2:72971207-72971226 None:intergenic 25.0%
! AAAGAAGGCTTATTACAAAT+TGG - chr7_2:72971319-72971338 Msa1074900:intron 25.0%
!!! TATTTGTTTGTTGGCTTTTT+TGG - chr7_2:72971430-72971449 Msa1074900:intron 25.0%
!!! ATTTGTTTGTTGGCTTTTTT+GGG - chr7_2:72971431-72971450 Msa1074900:intron 25.0%
!! AAATAACTTTTTGCAATTGC+TGG + chr7_2:72971505-72971524 None:intergenic 25.0%
!! CAAAAAGTTATTTCCATTCT+TGG - chr7_2:72971512-72971531 Msa1074900:intron 25.0%
! ATAAAATTTAACAGACCACA+AGG + chr7_2:72971713-72971732 None:intergenic 25.0%
!!! GGTCTGTTAAATTTTATTTG+AGG - chr7_2:72971716-72971735 Msa1074900:intron 25.0%
! ATACTACTGAATCAGAATAT+AGG - chr7_2:72971749-72971768 Msa1074900:CDS 25.0%
!! TAGGAATATAATGGTGTTAA+CGG - chr7_2:72971768-72971787 Msa1074900:CDS 25.0%
! TATGGGCATACATATATAAT+TGG + chr7_2:72971880-72971899 None:intergenic 25.0%
! TTTCAAAACAATGTACAAGA+AGG - chr7_2:72972205-72972224 Msa1074900:intron 25.0%
! TTTAGTCAGATATTTGGTAT+AGG - chr7_2:72972625-72972644 Msa1074900:CDS 25.0%
! AATTAGCATATTAACTCCTT+TGG - chr7_2:72972763-72972782 Msa1074900:intron 25.0%
! CTTTCTTAGAAAAATACCAA+AGG + chr7_2:72972782-72972801 None:intergenic 25.0%
! ACATCATTATCTATGTTAAC+TGG + chr7_2:72972958-72972977 None:intergenic 25.0%
! TTTGCTTAAATACCAAAATC+TGG - chr7_2:72973069-72973088 Msa1074900:intron 25.0%
! CATTAAACAAACAATCATCA+AGG + chr7_2:72973135-72973154 None:intergenic 25.0%
! ATTTGACCTATAAAAAGCAA+TGG + chr7_2:72973330-72973349 None:intergenic 25.0%
!!! TGATTGCTTTGATTTTTTTG+AGG + chr7_2:72973525-72973544 None:intergenic 25.0%
! ACATTTGATTACTACATGAA+AGG + chr7_2:72973623-72973642 None:intergenic 25.0%
! GTAATCAAATGTTAGTGTAA+TGG - chr7_2:72973631-72973650 Msa1074900:exon 25.0%
ACCTGAATCGTAAATTATAG+CGG - chr7_2:72970364-72970383 Msa1074900:three_prime_UTR 30.0%
AAATCTCTCTGTGTGAAAAA+TGG - chr7_2:72970495-72970514 Msa1074900:three_prime_UTR 30.0%
! TCTGTGAAATTTTCAATGGA+AGG - chr7_2:72970892-72970911 Msa1074900:CDS 30.0%
!! TTATTTTGCGGCTAATTTCT+TGG - chr7_2:72970997-72971016 Msa1074900:intron 30.0%
! CTTTTGTAATATCTTGGTCT+TGG - chr7_2:72971022-72971041 Msa1074900:intron 30.0%
! AACCAGAGAACAAAGATTTT+TGG + chr7_2:72971071-72971090 None:intergenic 30.0%
!! ATAGGTTCTAGATTTGTTCT+TGG - chr7_2:72971116-72971135 Msa1074900:intron 30.0%
ACAAGTGGAACAAATAACAA+TGG + chr7_2:72971179-72971198 None:intergenic 30.0%
ACCTAAAATGAAGTCAACAA+CGG + chr7_2:72971263-72971282 None:intergenic 30.0%
!!! TTGACTTCATTTTAGGTTCT+TGG - chr7_2:72971266-72971285 Msa1074900:intron 30.0%
!!! TGACTTCATTTTAGGTTCTT+GGG - chr7_2:72971267-72971286 Msa1074900:intron 30.0%
! CTTCTTTATTTCTTGTTGAG+AGG + chr7_2:72971306-72971325 None:intergenic 30.0%
CTCTCAACAAGAAATAAAGA+AGG - chr7_2:72971304-72971323 Msa1074900:intron 30.0%
CTTATTACAAATTGGCATTG+CGG - chr7_2:72971327-72971346 Msa1074900:intron 30.0%
GTAATTACTTGTGTTCATAC+AGG - chr7_2:72971463-72971482 Msa1074900:intron 30.0%
CTGTTCAAGATGAATTAATC+CGG - chr7_2:72971640-72971659 Msa1074900:intron 30.0%
ATTAATCCGGCATAATATGT+TGG - chr7_2:72971653-72971672 Msa1074900:intron 30.0%
GTAAATCCAACATATTATGC+CGG + chr7_2:72971662-72971681 None:intergenic 30.0%
GATTTACAATTTGAATGCCT+AGG - chr7_2:72971675-72971694 Msa1074900:intron 30.0%
ATTACAAAGTGGAAATTGAG+AGG + chr7_2:72971832-72971851 None:intergenic 30.0%
GGCATACATATATAATTGGA+AGG + chr7_2:72971876-72971895 None:intergenic 30.0%
TGTCCAAAATGCTAATTGTT+GGG + chr7_2:72972090-72972109 None:intergenic 30.0%
CATTATCTCTTCTGTTAATC+AGG - chr7_2:72972148-72972167 Msa1074900:intron 30.0%
!!! GCATTAGTCATTTTTGTAAG+AGG - chr7_2:72972447-72972466 Msa1074900:intron 30.0%
TATCTGACTAAAACCTTGTT+CGG + chr7_2:72972617-72972636 None:intergenic 30.0%
!! CAAGGTTTTAGTCAGATATT+TGG - chr7_2:72972619-72972638 Msa1074900:CDS 30.0%
CTAAAAGCAAAATAACTGCA+AGG + chr7_2:72972731-72972750 None:intergenic 30.0%
!! CTTGCAGTTATTTTGCTTTT+AGG - chr7_2:72972729-72972748 Msa1074900:intron 30.0%
!! TTTACTTGGTCTTGATGATT+TGG + chr7_2:72972806-72972825 None:intergenic 30.0%
!! TTTACTTGGTCTTGATGATT+TGG + chr7_2:72972806-72972825 None:intergenic 30.0%
!!! CGAGTATTGTGAGTATTTTT+TGG + chr7_2:72972916-72972935 None:intergenic 30.0%
GGTCTATGTTTCTTATAACT+AGG - chr7_2:72973010-72973029 Msa1074900:intron 30.0%
!!! TTATAATGGACTCCAGATTT+TGG + chr7_2:72973084-72973103 None:intergenic 30.0%
TAATGTTCTCTTAATTCTGC+AGG - chr7_2:72973150-72973169 Msa1074900:intron 30.0%
TAATTCTGCAGGAGAATTAA+AGG - chr7_2:72973161-72973180 Msa1074900:intron 30.0%
TTAATAGAACAAGCAAAACC+CGG + chr7_2:72973279-72973298 None:intergenic 30.0%
!!! ACTGATCCATTGCTTTTTAT+AGG - chr7_2:72973321-72973340 Msa1074900:intron 30.0%
CCTGAATCGTAAATTATAGC+GGG - chr7_2:72970365-72970384 Msa1074900:three_prime_UTR 35.0%
! ACACAGAGAGATTTGTTTGA+TGG + chr7_2:72970489-72970508 None:intergenic 35.0%
AGCGAAATGAAAATTTGCAG+AGG + chr7_2:72970621-72970640 None:intergenic 35.0%
!!! TCTTGGTCTTGGATCTTTTT+TGG - chr7_2:72971033-72971052 Msa1074900:intron 35.0%
!!! CTTGGTCTTGGATCTTTTTT+GGG - chr7_2:72971034-72971053 Msa1074900:intron 35.0%
!! AAAGATTTTTGGACGCAGTT+TGG + chr7_2:72971060-72971079 None:intergenic 35.0%
GTCCAAAAATCTTTGTTCTC+TGG - chr7_2:72971066-72971085 Msa1074900:intron 35.0%
! TGTTCTCTGGTTTGATTGTT+TGG - chr7_2:72971079-72971098 Msa1074900:intron 35.0%
TTAGCATGTGTTTAGATGCA+CGG + chr7_2:72971238-72971257 None:intergenic 35.0%
!!! TCCGTTGTTGACTTCATTTT+AGG - chr7_2:72971259-72971278 Msa1074900:intron 35.0%
!!! TTCATTTTAGGTTCTTGGGT+TGG - chr7_2:72971271-72971290 Msa1074900:intron 35.0%
TAAAAAATCACCTCATCACC+AGG + chr7_2:72971371-72971390 None:intergenic 35.0%
!!! GGTGATGAGGTGATTTTTTA+AGG - chr7_2:72971371-72971390 Msa1074900:intron 35.0%
ATTACTTGTGTTCATACAGG+AGG - chr7_2:72971466-72971485 Msa1074900:intron 35.0%
CAGAATCTCAGATTACAAAG+TGG + chr7_2:72971843-72971862 None:intergenic 35.0%
TGTTAAGCGAGACAGAATAT+GGG + chr7_2:72971897-72971916 None:intergenic 35.0%
ATGTTAAGCGAGACAGAATA+TGG + chr7_2:72971898-72971917 None:intergenic 35.0%
GCTTAACATGTTCATTCAGA+CGG - chr7_2:72971909-72971928 Msa1074900:intron 35.0%
CTTAACATGTTCATTCAGAC+GGG - chr7_2:72971910-72971929 Msa1074900:intron 35.0%
! ATGCCCAACAATTAGCATTT+TGG - chr7_2:72972084-72972103 Msa1074900:intron 35.0%
GTGTCCAAAATGCTAATTGT+TGG + chr7_2:72972091-72972110 None:intergenic 35.0%
!! GTTGTTTTGTAATGAACCAC+AGG - chr7_2:72972290-72972309 Msa1074900:intron 35.0%
! TGAGCTGTACAAAAAGTACA+AGG - chr7_2:72972383-72972402 Msa1074900:intron 35.0%
! GAGCTGTACAAAAAGTACAA+GGG - chr7_2:72972384-72972403 Msa1074900:intron 35.0%
! AGCTGTACAAAAAGTACAAG+GGG - chr7_2:72972385-72972404 Msa1074900:intron 35.0%
AGTACAAGGGGAATATGAAA+AGG - chr7_2:72972397-72972416 Msa1074900:intron 35.0%
CATCAAGAATGTCCTTGAAT+CGG + chr7_2:72972555-72972574 None:intergenic 35.0%
ATTCAAGGACATTCTTGATG+AGG - chr7_2:72972555-72972574 Msa1074900:intron 35.0%
! TAACTAGATTTTGCCGAACA+AGG - chr7_2:72972601-72972620 Msa1074900:CDS 35.0%
AAAAGCAAGTCAGTAGATAG+TGG - chr7_2:72972701-72972720 Msa1074900:intron 35.0%
AAAGCAAGTCAGTAGATAGT+GGG - chr7_2:72972702-72972721 Msa1074900:intron 35.0%
!! GACCAAGTAAAAGCATTTGA+AGG - chr7_2:72972815-72972834 Msa1074900:CDS 35.0%
! CTCCTTCAAATGCTTTTACT+TGG + chr7_2:72972820-72972839 None:intergenic 35.0%
!! GACCAAGTAAAAGCATTTGA+AGG - chr7_2:72972815-72972834 Msa1074900:CDS 35.0%
! CTCCTTCAAATGCTTTTACT+TGG + chr7_2:72972820-72972839 None:intergenic 35.0%
AACAAAAGCCTACCAGAAAT+GGG - chr7_2:72973185-72973204 Msa1074900:intron 35.0%
! TTCCTCTTTAAAGGACTTGT+GGG + chr7_2:72973237-72973256 None:intergenic 35.0%
TACTTTGCCTTCCTCTTTAA+AGG + chr7_2:72973246-72973265 None:intergenic 35.0%
TCTCTAGTATCAAAGTATGG+TGG - chr7_2:72973431-72973450 Msa1074900:intron 35.0%
TGCACAGAAAAAGTTGGAAA+AGG - chr7_2:72973493-72973512 Msa1074900:intron 35.0%
GCACAGAAAAAGTTGGAAAA+GGG - chr7_2:72973494-72973513 Msa1074900:intron 35.0%
GTAATGGTTGTTCATTTCTG+CGG - chr7_2:72973647-72973666 Msa1074900:five_prime_UTR 35.0%
CCCGCTATAATTTACGATTC+AGG + chr7_2:72970368-72970387 None:intergenic 40.0%
!! GAAACCCTAGTTTTCTTCCT+CGG + chr7_2:72970523-72970542 None:intergenic 40.0%
! GAAGGCTAGACTAGAGTATT+GGG - chr7_2:72970910-72970929 Msa1074900:CDS 40.0%
TTGGAATTGCACTTGCACAT+AGG - chr7_2:72971098-72971117 Msa1074900:intron 40.0%
TTTGTTGAGGAGTCAACAAG+TGG + chr7_2:72971194-72971213 None:intergenic 40.0%
TCATCACCAGGATTCTTATC+TGG + chr7_2:72971359-72971378 None:intergenic 40.0%
! AGATAAGAATCCTGGTGATG+AGG - chr7_2:72971358-72971377 Msa1074900:intron 40.0%
!!! GTTTGTTGGCTTTTTTGGGT+TGG - chr7_2:72971435-72971454 Msa1074900:intron 40.0%
TTTCTCTTCGTCTCCAAGAA+TGG + chr7_2:72971528-72971547 None:intergenic 40.0%
TTCTTGGAGACGAAGAGAAA+CGG - chr7_2:72971528-72971547 Msa1074900:intron 40.0%
!! TGCATTGATGATGATGTGAG+TGG - chr7_2:72971572-72971591 Msa1074900:CDS 40.0%
!! CAAGGACTTGCTAAAAACCT+AGG + chr7_2:72971695-72971714 None:intergenic 40.0%
!!! AGGTTTTTAGCAAGTCCTTG+TGG - chr7_2:72971695-72971714 Msa1074900:intron 40.0%
CTCTTCTGTTAATCAGGATC+TGG - chr7_2:72972154-72972173 Msa1074900:intron 40.0%
TACCACAATGCATCAGGAAA+GGG + chr7_2:72972253-72972272 None:intergenic 40.0%
ATACCACAATGCATCAGGAA+AGG + chr7_2:72972254-72972273 None:intergenic 40.0%
CATGTATACCACAATGCATC+AGG + chr7_2:72972259-72972278 None:intergenic 40.0%
! AGGAGTTTGAAGCAAACTAC+CGG - chr7_2:72972331-72972350 Msa1074900:intron 40.0%
ATAGGTCTTAGTTTCTACGC+AGG - chr7_2:72972643-72972662 Msa1074900:CDS 40.0%
CAACAAAAGCCTACCAGAAA+TGG - chr7_2:72973184-72973203 Msa1074900:intron 40.0%
ATACTTCCTTAGCCCATTTC+TGG + chr7_2:72973200-72973219 None:intergenic 40.0%
! CTTCCTCTTTAAAGGACTTG+TGG + chr7_2:72973238-72973257 None:intergenic 40.0%
! CACAAGTCCTTTAAAGAGGA+AGG - chr7_2:72973236-72973255 Msa1074900:intron 40.0%
!! GGCAAAGTAAGTTGATCAAC+CGG - chr7_2:72973257-72973276 Msa1074900:intron 40.0%
!! GCAAAGTAAGTTGATCAACC+GGG - chr7_2:72973258-72973277 Msa1074900:intron 40.0%
ACTGACCTTTCCTCTCATTT+CGG + chr7_2:72973394-72973413 None:intergenic 40.0%
GCGTCTCTAGTATCAAAGTA+TGG - chr7_2:72973428-72973447 Msa1074900:intron 40.0%
GCTTCAAATTCCTCTTCAGA+GGG + chr7_2:72973473-72973492 None:intergenic 40.0%
AGCTTCAAATTCCTCTTCAG+AGG + chr7_2:72973474-72973493 None:intergenic 40.0%
TGAAGCTGCACAGAAAAAGT+TGG - chr7_2:72973487-72973506 Msa1074900:intron 40.0%
TTGTGTGAAGTGTGAGAACA+TGG - chr7_2:72973589-72973608 Msa1074900:CDS 40.0%
TATGTGCAATGTAGTGTGAC+TGG - chr7_2:72973691-72973710 Msa1074900:five_prime_UTR 40.0%
ACCTCAAAAGACTCTCTACC+AGG - chr7_2:72970567-72970586 Msa1074900:three_prime_UTR 45.0%
! ACCTGGTAGAGAGTCTTTTG+AGG + chr7_2:72970571-72970590 None:intergenic 45.0%
AAGCGTGAATTTGCGATACC+TGG + chr7_2:72970588-72970607 None:intergenic 45.0%
GGAAGGCTAGACTAGAGTAT+TGG - chr7_2:72970909-72970928 Msa1074900:CDS 45.0%
!! GGTTCTTGGGTTGGAGAAAA+CGG - chr7_2:72971280-72971299 Msa1074900:intron 45.0%
CTCCATCCAGATAAGAATCC+TGG - chr7_2:72971350-72971369 Msa1074900:intron 45.0%
CACCAGGATTCTTATCTGGA+TGG + chr7_2:72971355-72971374 None:intergenic 45.0%
!! TAAGGCTGCTTGTTATGCTG+TGG - chr7_2:72971389-72971408 Msa1074900:intron 45.0%
TCTTGGAGACGAAGAGAAAC+GGG - chr7_2:72971529-72971548 Msa1074900:intron 45.0%
!! GATGATGTGAGTGGTGTTGT+TGG - chr7_2:72971581-72971600 Msa1074900:CDS 45.0%
AGCCTTGGTCTCTCAATCTA+GGG + chr7_2:72971806-72971825 None:intergenic 45.0%
GAAATTGAGAGGAAGAGCCT+TGG + chr7_2:72971821-72971840 None:intergenic 45.0%
TCTGTTAATCAGGATCTGGC+AGG - chr7_2:72972158-72972177 Msa1074900:intron 45.0%
ACCACAATGCATCAGGAAAG+GGG + chr7_2:72972252-72972271 None:intergenic 45.0%
ATATCAGCTTCAGTGACCTG+TGG + chr7_2:72972309-72972328 None:intergenic 45.0%
GGTCACTGAAGCTGATATTG+AGG - chr7_2:72972311-72972330 Msa1074900:intron 45.0%
! GGAGTTTGAAGCAAACTACC+GGG - chr7_2:72972332-72972351 Msa1074900:intron 45.0%
! GAGTTTGAAGCAAACTACCG+GGG - chr7_2:72972333-72972352 Msa1074900:intron 45.0%
! TTTTCTCTGAGTCAGAACCC+CGG + chr7_2:72972353-72972372 None:intergenic 45.0%
!! ACTTGACTCACACCGATTCA+AGG - chr7_2:72972540-72972559 Msa1074900:intron 45.0%
!! TTCCTTAGCCCATTTCTGGT+AGG + chr7_2:72973196-72973215 None:intergenic 45.0%
TAAAGGACTTGTGGGTGGTT+TGG + chr7_2:72973229-72973248 None:intergenic 45.0%
! CTCTTTAAAGGACTTGTGGG+TGG + chr7_2:72973234-72973253 None:intergenic 45.0%
! CACCCACAAGTCCTTTAAAG+AGG - chr7_2:72973232-72973251 Msa1074900:intron 45.0%
TATCACAACGCCGAAATGAG+AGG - chr7_2:72973381-72973400 Msa1074900:intron 45.0%
AATTCCTCTTCAGAGGGTTC+TGG + chr7_2:72973467-72973486 None:intergenic 45.0%
TCATTTCTGCGGATCTACTC+TGG - chr7_2:72973658-72973677 Msa1074900:five_prime_UTR 45.0%
!!! TTTTTTTTTTTTTTTTATGT+TGG - chr7_2:72970688-72970707 Msa1074900:CDS 5.0%
GCCTTGGTCTCTCAATCTAG+GGG + chr7_2:72971805-72971824 None:intergenic 50.0%
GAGCCTTGGTCTCTCAATCT+AGG + chr7_2:72971807-72971826 None:intergenic 50.0%
CAATGCATCAGGAAAGGGGA+TGG + chr7_2:72972248-72972267 None:intergenic 50.0%
TCCCCTTTCCTGATGCATTG+TGG - chr7_2:72972248-72972267 Msa1074900:intron 50.0%
CTTGATGAGGCTATAGCTGC+TGG - chr7_2:72972568-72972587 Msa1074900:CDS 50.0%
TGAGGCTATAGCTGCTGGTA+AGG - chr7_2:72972573-72972592 Msa1074900:CDS 50.0%
GAGGCTATAGCTGCTGGTAA+GGG - chr7_2:72972574-72972593 Msa1074900:CDS 50.0%
!! AGCCTACCAGAAATGGGCTA+AGG - chr7_2:72973191-72973210 Msa1074900:intron 50.0%
CAACGCCGAAATGAGAGGAA+AGG - chr7_2:72973386-72973405 Msa1074900:intron 50.0%
! TATGCCAGAACCCTCTGAAG+AGG - chr7_2:72973460-72973479 Msa1074900:intron 50.0%
CTGTGTGAAAAATGGCGCCG+AGG - chr7_2:72970503-72970522 Msa1074900:three_prime_UTR 55.0%
! TGGCGCCGAGGAAGAAAACT+AGG - chr7_2:72970515-72970534 Msa1074900:three_prime_UTR 55.0%
! GGCGCCGAGGAAGAAAACTA+GGG - chr7_2:72970516-72970535 Msa1074900:three_prime_UTR 55.0%
CGGGCTCTCTATGATCAGAC+TGG - chr7_2:72971548-72971567 Msa1074900:intron 55.0%
GCCCCTAGATTGAGAGACCA+AGG - chr7_2:72971801-72971820 Msa1074900:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_2 gene 72970345 72973805 72970345 ID=Msa1074900;Name=Msa1074900
chr7_2 mRNA 72970345 72973805 72970345 ID=Msa1074900-mRNA-1;Parent=Msa1074900;Name=Msa1074900-mRNA-1;_AED=0.10;_eAED=0.10;_QI=169|1|1|1|1|1|8|249|275
chr7_2 exon 72970345 72970807 72970345 ID=Msa1074900-mRNA-1:exon:16887;Parent=Msa1074900-mRNA-1
chr7_2 exon 72970888 72970978 72970888 ID=Msa1074900-mRNA-1:exon:16886;Parent=Msa1074900-mRNA-1
chr7_2 exon 72971561 72971643 72971561 ID=Msa1074900-mRNA-1:exon:16885;Parent=Msa1074900-mRNA-1
chr7_2 exon 72971732 72971838 72971732 ID=Msa1074900-mRNA-1:exon:16884;Parent=Msa1074900-mRNA-1
chr7_2 exon 72971924 72971980 72971924 ID=Msa1074900-mRNA-1:exon:16883;Parent=Msa1074900-mRNA-1
chr7_2 exon 72972564 72972665 72972564 ID=Msa1074900-mRNA-1:exon:16882;Parent=Msa1074900-mRNA-1
chr7_2 exon 72972771 72972869 72972771 ID=Msa1074900-mRNA-1:exon:16881;Parent=Msa1074900-mRNA-1
chr7_2 exon 72973562 72973805 72973562 ID=Msa1074900-mRNA-1:exon:16880;Parent=Msa1074900-mRNA-1
chr7_2 five_prime_UTR 72973637 72973805 72973637 ID=Msa1074900-mRNA-1:five_prime_utr;Parent=Msa1074900-mRNA-1
chr7_2 CDS 72973562 72973636 72973562 ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1
chr7_2 CDS 72972771 72972869 72972771 ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1
chr7_2 CDS 72972564 72972665 72972564 ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1
chr7_2 CDS 72971924 72971980 72971924 ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1
chr7_2 CDS 72971732 72971838 72971732 ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1
chr7_2 CDS 72971561 72971643 72971561 ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1
chr7_2 CDS 72970888 72970978 72970888 ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1
chr7_2 CDS 72970594 72970807 72970594 ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1
chr7_2 three_prime_UTR 72970345 72970593 72970345 ID=Msa1074900-mRNA-1:three_prime_utr;Parent=Msa1074900-mRNA-1
Gene Sequence

>Msa1074900

ATGGCGCCGAGGAAGAAAACTAGGGTTTCCGATGATGAAGAAATTGAAGATCAACCTCAAAAGACTCTCTACCAGGTTCTTGGGTTGGAGAAAACGGCCTCTCAACAAGAAATAAAGAAGGCTTATTACAAATTGGCATTGCGGCTCCATCCAGATAAGAATCCTGGTGATGAGGAGGCTAAAGAGAAATTCCAGCAATTGCAAAAAGTTATTTCCATTCTTGGAGACGAAGAGAAACGGGCTCTCTATGATCAGACTGGTTGCATTGATGATGATGATCTGGCAGGAGATGTTCAGAATCTTCACGCATTTTTCAAAACAATGTACAAGAAGGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAACTACCGGGGTTCTGACTCAGAGAAAAATGATTTGATTGAGCTGTACAAAAAGTACAAGGGGAATATGAAAAGACTTTTTTGTTCAATGCTTTGTTCAGATGCTAAACTTGACTCACACCGATTCAAGGACATTCTTGATGAGGCTATAGCTGCTGGAGAATTAAAGGCAACAAAAGCCTACCAGAAATGGGCTAAGGAAGTATCAGAAACCAAACCACCCACAAGTCCTTTAAAGAGGAAGGCAAAGTCAAATAAGCAGTCTGAAACAGATCTGTGTGCAATCATATCACAACGCCGAAATGAGAGGAAAGGTCAGTTTGATTCAATGTTTGCGTCTCTAGTATCAAAGTATGGTGGAAGTGATATGCCAGAACCCTCTGAAGAGGAATTTGAAGCTGCACAGAAAAAGTTGGAAAAGGGAAGATCCTCAAAAAAATCAAAGCAATCAAAGCGAAAGTAA

Protein sequence

>Msa1074900

MAPRKKTRVSDDEEIEDQPQKTLYQVLGLEKTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEEKRALYDQTGCIDDDDLAGDVQNLHAFFKTMYKKVTEADIEEFEANYRGSDSEKNDLIELYKKYKGNMKRLFCSMLCSDAKLDSHRFKDILDEAIAAGELKATKAYQKWAKEVSETKPPTSPLKRKAKSNKQSETDLCAIISQRRNERKGQFDSMFASLVSKYGGSDMPEPSEEEFEAAQKKLEKGRSSKKSKQSKRK*