Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1074900 | XP_003625185.1 | 98.909 | 275 | 3 | 0 | 1 | 275 | 1 | 275 | 0.0 | 556 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1074900 | sp|Q9FL54|DNAJ6_ARATH | 64.894 | 282 | 87 | 4 | 1 | 270 | 1 | 282 | 4.78e-117 | 340 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1074900 | A2Q3D3 | 98.909 | 275 | 3 | 0 | 1 | 275 | 1 | 275 | 0.0 | 556 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0029380 | Msa1074900 | 0.814616 | 1.407226e-51 | -8.615850e-47 |
Msa0038940 | Msa1074900 | 0.810021 | 1.417707e-50 | -8.615850e-47 |
Msa0042640 | Msa1074900 | 0.802985 | 4.325004e-49 | -8.615850e-47 |
Msa0044160 | Msa1074900 | 0.814833 | 1.259327e-51 | -8.615850e-47 |
Msa0065020 | Msa1074900 | 0.806570 | 7.716114e-50 | -8.615850e-47 |
Msa0074360 | Msa1074900 | 0.802936 | 4.427015e-49 | -8.615850e-47 |
Msa0077340 | Msa1074900 | 0.870570 | 1.320277e-66 | -8.615850e-47 |
Msa0077560 | Msa1074900 | 0.867736 | 1.098340e-65 | -8.615850e-47 |
Msa0082020 | Msa1074900 | 0.815445 | 9.209814e-52 | -8.615850e-47 |
Msa0093850 | Msa1074900 | 0.812286 | 4.575666e-51 | -8.615850e-47 |
Msa0094780 | Msa1074900 | 0.841319 | 5.107239e-58 | -8.615850e-47 |
Msa0094790 | Msa1074900 | 0.811238 | 7.737767e-51 | -8.615850e-47 |
Msa0608700 | Msa1074900 | 0.803733 | 3.028558e-49 | -8.615850e-47 |
Msa0610700 | Msa1074900 | -0.807479 | 4.954401e-50 | -8.615850e-47 |
Msa0621320 | Msa1074900 | 0.818663 | 1.742541e-52 | -8.615850e-47 |
Msa0624900 | Msa1074900 | 0.829612 | 4.670014e-55 | -8.615850e-47 |
Msa0626460 | Msa1074900 | 0.814055 | 1.871846e-51 | -8.615850e-47 |
Msa0641990 | Msa1074900 | 0.823516 | 1.328409e-53 | -8.615850e-47 |
Msa0649200 | Msa1074900 | 0.807726 | 4.390115e-50 | -8.615850e-47 |
Msa0652000 | Msa1074900 | 0.817137 | 3.853253e-52 | -8.615850e-47 |
Msa0652770 | Msa1074900 | 0.818439 | 1.959359e-52 | -8.615850e-47 |
Msa0658640 | Msa1074900 | 0.818103 | 2.334488e-52 | -8.615850e-47 |
Msa0660370 | Msa1074900 | 0.823697 | 1.204457e-53 | -8.615850e-47 |
Msa0674480 | Msa1074900 | 0.819582 | 1.076642e-52 | -8.615850e-47 |
Msa0693330 | Msa1074900 | 0.804547 | 2.049891e-49 | -8.615850e-47 |
Msa0693340 | Msa1074900 | -0.840556 | 8.097385e-58 | -8.615850e-47 |
Msa0694500 | Msa1074900 | 0.811744 | 6.006063e-51 | -8.615850e-47 |
Msa0703600 | Msa1074900 | 0.815781 | 7.753471e-52 | -8.615850e-47 |
Msa0703950 | Msa1074900 | 0.842488 | 2.508798e-58 | -8.615850e-47 |
Msa0706760 | Msa1074900 | 0.807183 | 5.725158e-50 | -8.615850e-47 |
Msa0709200 | Msa1074900 | 0.817444 | 3.287285e-52 | -8.615850e-47 |
Msa0709440 | Msa1074900 | 0.860535 | 1.930989e-63 | -8.615850e-47 |
Msa0714790 | Msa1074900 | 0.811352 | 7.309229e-51 | -8.615850e-47 |
Msa0716890 | Msa1074900 | 0.841997 | 3.382879e-58 | -8.615850e-47 |
Msa0734250 | Msa1074900 | 0.820073 | 8.317829e-53 | -8.615850e-47 |
Msa0754430 | Msa1074900 | 0.848824 | 4.791272e-60 | -8.615850e-47 |
Msa0754450 | Msa1074900 | 0.848623 | 5.448182e-60 | -8.615850e-47 |
Msa0758030 | Msa1074900 | 0.811090 | 8.332072e-51 | -8.615850e-47 |
Msa0772220 | Msa1074900 | 0.802000 | 6.902799e-49 | -8.615850e-47 |
Msa0773630 | Msa1074900 | 0.801494 | 8.767419e-49 | -8.615850e-47 |
Msa0780910 | Msa1074900 | 0.830963 | 2.183548e-55 | -8.615850e-47 |
Msa0795750 | Msa1074900 | 0.816464 | 5.455205e-52 | -8.615850e-47 |
Msa0795870 | Msa1074900 | 0.808524 | 2.968545e-50 | -8.615850e-47 |
Msa0804000 | Msa1074900 | 0.815028 | 1.140287e-51 | -8.615850e-47 |
Msa0813160 | Msa1074900 | 0.808202 | 3.476864e-50 | -8.615850e-47 |
Msa0815970 | Msa1074900 | 0.830615 | 2.657610e-55 | -8.615850e-47 |
Msa0821160 | Msa1074900 | 0.804296 | 2.312865e-49 | -8.615850e-47 |
Msa0833650 | Msa1074900 | 0.809203 | 2.125319e-50 | -8.615850e-47 |
Msa0837710 | Msa1074900 | 0.817570 | 3.078755e-52 | -8.615850e-47 |
Msa0123070 | Msa1074900 | 0.804999 | 1.649288e-49 | -8.615850e-47 |
Msa0124910 | Msa1074900 | 0.847865 | 8.822038e-60 | -8.615850e-47 |
Msa0125360 | Msa1074900 | 0.853159 | 2.872372e-61 | -8.615850e-47 |
Msa0127770 | Msa1074900 | 0.803775 | 2.968017e-49 | -8.615850e-47 |
Msa0142430 | Msa1074900 | 0.842794 | 2.079652e-58 | -8.615850e-47 |
Msa0168050 | Msa1074900 | 0.803438 | 3.485323e-49 | -8.615850e-47 |
Msa0169410 | Msa1074900 | 0.823870 | 1.097303e-53 | -8.615850e-47 |
Msa0181650 | Msa1074900 | 0.821307 | 4.327596e-53 | -8.615850e-47 |
Msa0183710 | Msa1074900 | 0.815957 | 7.082099e-52 | -8.615850e-47 |
Msa0190730 | Msa1074900 | 0.833883 | 4.129736e-56 | -8.615850e-47 |
Msa0195230 | Msa1074900 | 0.801097 | 1.057463e-48 | -8.615850e-47 |
Msa0204950 | Msa1074900 | 0.837615 | 4.682476e-57 | -8.615850e-47 |
Msa0209140 | Msa1074900 | 0.837601 | 4.720736e-57 | -8.615850e-47 |
Msa0218040 | Msa1074900 | 0.804839 | 1.781939e-49 | -8.615850e-47 |
Msa0225480 | Msa1074900 | 0.815568 | 8.648645e-52 | -8.615850e-47 |
Msa0373500 | Msa1074900 | 0.830801 | 2.393763e-55 | -8.615850e-47 |
Msa0377710 | Msa1074900 | 0.822659 | 2.104687e-53 | -8.615850e-47 |
Msa0380490 | Msa1074900 | 0.844360 | 7.935400e-59 | -8.615850e-47 |
Msa0389690 | Msa1074900 | 0.802542 | 5.340260e-49 | -8.615850e-47 |
Msa0408360 | Msa1074900 | 0.801342 | 9.419850e-49 | -8.615850e-47 |
Msa0408380 | Msa1074900 | 0.818217 | 2.199957e-52 | -8.615850e-47 |
Msa0409830 | Msa1074900 | 0.830519 | 2.806209e-55 | -8.615850e-47 |
Msa0412790 | Msa1074900 | 0.825839 | 3.766197e-54 | -8.615850e-47 |
Msa0414880 | Msa1074900 | 0.846790 | 1.740751e-59 | -8.615850e-47 |
Msa0416020 | Msa1074900 | 0.813345 | 2.682490e-51 | -8.615850e-47 |
Msa0424160 | Msa1074900 | 0.808393 | 3.166710e-50 | -8.615850e-47 |
Msa0430000 | Msa1074900 | 0.835908 | 1.276048e-56 | -8.615850e-47 |
Msa0430230 | Msa1074900 | 0.803910 | 2.782398e-49 | -8.615850e-47 |
Msa0432010 | Msa1074900 | 0.814102 | 1.827657e-51 | -8.615850e-47 |
Msa0436330 | Msa1074900 | 0.829964 | 3.834088e-55 | -8.615850e-47 |
Msa0437520 | Msa1074900 | 0.810510 | 1.111883e-50 | -8.615850e-47 |
Msa0454560 | Msa1074900 | 0.817006 | 4.125305e-52 | -8.615850e-47 |
Msa0459740 | Msa1074900 | 0.829195 | 5.895282e-55 | -8.615850e-47 |
Msa0465530 | Msa1074900 | 0.803062 | 4.170276e-49 | -8.615850e-47 |
Msa0468620 | Msa1074900 | 0.826574 | 2.518022e-54 | -8.615850e-47 |
Msa0481890 | Msa1074900 | 0.859937 | 2.927191e-63 | -8.615850e-47 |
Msa0980290 | Msa1074900 | 0.822732 | 2.023252e-53 | -8.615850e-47 |
Msa0982650 | Msa1074900 | 0.816573 | 5.158566e-52 | -8.615850e-47 |
Msa0995370 | Msa1074900 | 0.800603 | 1.333937e-48 | -8.615850e-47 |
Msa1002350 | Msa1074900 | 0.820489 | 6.677490e-53 | -8.615850e-47 |
Msa1034860 | Msa1074900 | 0.895065 | 1.364736e-75 | -8.615850e-47 |
Msa1055200 | Msa1074900 | 0.803664 | 3.129473e-49 | -8.615850e-47 |
Msa1072940 | Msa1074900 | 0.841813 | 3.783401e-58 | -8.615850e-47 |
Msa1074900 | Msa1078830 | 0.836572 | 8.649442e-57 | -8.615850e-47 |
Msa1074900 | Msa1078890 | 0.804579 | 2.018519e-49 | -8.615850e-47 |
Msa1074900 | Msa1084530 | 0.853639 | 2.092625e-61 | -8.615850e-47 |
Msa1074900 | Msa1106590 | 0.806884 | 6.622955e-50 | -8.615850e-47 |
Msa1074900 | Msa1125820 | 0.853731 | 1.968410e-61 | -8.615850e-47 |
Msa1074900 | Msa1125990 | 0.855896 | 4.637641e-62 | -8.615850e-47 |
Msa1074900 | Msa1132530 | 0.810243 | 1.270097e-50 | -8.615850e-47 |
Msa1074900 | Msa1132840 | 0.808412 | 3.136848e-50 | -8.615850e-47 |
Msa1074900 | Msa1147700 | 0.801976 | 6.983687e-49 | -8.615850e-47 |
Msa1074900 | Msa1160920 | 0.833761 | 4.429814e-56 | -8.615850e-47 |
Msa1074900 | Msa1162230 | 0.939458 | 1.228060e-99 | -8.615850e-47 |
Msa1074900 | Msa1165090 | 0.856156 | 3.893034e-62 | -8.615850e-47 |
Msa1074900 | Msa1169660 | 0.864168 | 1.476595e-64 | -8.615850e-47 |
Msa1074900 | Msa1171290 | 0.866658 | 2.428001e-65 | -8.615850e-47 |
Msa1074900 | Msa1190180 | 0.814185 | 1.752072e-51 | -8.615850e-47 |
Msa1074900 | Msa1192560 | 0.806789 | 6.935948e-50 | -8.615850e-47 |
Msa1074900 | Msa1192570 | 0.844503 | 7.259959e-59 | -8.615850e-47 |
Msa1074900 | Msa1192590 | 0.801686 | 8.010220e-49 | -8.615850e-47 |
Msa1074900 | Msa1194240 | 0.816548 | 5.224138e-52 | -8.615850e-47 |
Msa1074900 | Msa1207330 | 0.837756 | 4.307615e-57 | -8.615850e-47 |
Msa1074900 | Msa1210040 | 0.802016 | 6.851588e-49 | -8.615850e-47 |
Msa1074900 | Msa1216980 | 0.802123 | 6.512995e-49 | -8.615850e-47 |
Msa1074900 | Msa1218820 | 0.825936 | 3.570898e-54 | -8.615850e-47 |
Msa1074900 | Msa1226520 | 0.809998 | 1.433926e-50 | -8.615850e-47 |
Msa1074900 | Msa1254240 | 0.824329 | 8.564611e-54 | -8.615850e-47 |
Msa1074900 | Msa1257570 | 0.832195 | 1.085806e-55 | -8.615850e-47 |
Msa1074900 | Msa1258000 | 0.811995 | 5.296311e-51 | -8.615850e-47 |
Msa1074900 | Msa1259730 | 0.804105 | 2.533890e-49 | -8.615850e-47 |
Msa1074900 | Msa1268240 | 0.803878 | 2.824974e-49 | -8.615850e-47 |
Msa1074900 | Msa1299650 | 0.801344 | 9.411447e-49 | -8.615850e-47 |
Msa1074900 | Msa1306640 | 0.801774 | 7.682738e-49 | -8.615850e-47 |
Msa1074900 | Msa1307630 | 0.807792 | 4.250866e-50 | -8.615850e-47 |
Msa1074900 | Msa1327870 | 0.834438 | 2.997601e-56 | -8.615850e-47 |
Msa1074900 | Msa1331300 | 0.841749 | 3.934495e-58 | -8.615850e-47 |
Msa1074900 | Msa1340200 | 0.803930 | 2.755336e-49 | -8.615850e-47 |
Msa1074900 | Msa1365820 | 0.827074 | 1.912611e-54 | -8.615850e-47 |
Msa1074900 | Msa1366150 | 0.846381 | 2.250720e-59 | -8.615850e-47 |
Msa1074900 | Msa1368080 | 0.804230 | 2.386778e-49 | -8.615850e-47 |
Msa1074900 | Msa1368390 | 0.815806 | 7.653387e-52 | -8.615850e-47 |
Msa1074900 | Msa1368750 | 0.814374 | 1.591566e-51 | -8.615850e-47 |
Msa1074900 | Msa1374790 | 0.809741 | 1.628972e-50 | -8.615850e-47 |
Msa1074900 | Msa1375280 | 0.821398 | 4.124829e-53 | -8.615850e-47 |
Msa1074900 | Msa1384150 | 0.826288 | 2.945068e-54 | -8.615850e-47 |
Msa1074900 | Msa1387440 | 0.844821 | 5.961694e-59 | -8.615850e-47 |
Msa1074900 | Msa1389900 | 0.824841 | 6.486577e-54 | -8.615850e-47 |
Msa1074900 | Msa1391500 | 0.846724 | 1.814054e-59 | -8.615850e-47 |
Msa1074900 | Msa1398810 | 0.847071 | 1.458295e-59 | -8.615850e-47 |
Msa1074900 | Msa1401670 | 0.810704 | 1.009639e-50 | -8.615850e-47 |
Msa1074900 | Msa1405460 | 0.845404 | 4.148994e-59 | -8.615850e-47 |
Msa1074900 | Msa1407840 | 0.821724 | 3.467068e-53 | -8.615850e-47 |
Msa1074900 | Msa1412000 | 0.824859 | 6.425166e-54 | -8.615850e-47 |
Msa1074900 | Msa1412420 | 0.806554 | 7.773355e-50 | -8.615850e-47 |
Msa1074900 | Msa1414170 | 0.806999 | 6.261371e-50 | -8.615850e-47 |
Msa1074900 | Msa1427110 | 0.834791 | 2.443615e-56 | -8.615850e-47 |
Msa1074900 | Msa1427870 | 0.815663 | 8.236243e-52 | -8.615850e-47 |
Msa1074900 | Msa1429070 | 0.848353 | 6.471569e-60 | -8.615850e-47 |
Msa1074900 | Msa1437810 | 0.818415 | 1.984001e-52 | -8.615850e-47 |
Msa1074900 | Msa1447100 | 0.807178 | 5.738044e-50 | -8.615850e-47 |
Msa1074900 | Msa1449900 | 0.820433 | 6.877975e-53 | -8.615850e-47 |
Msa1074900 | Msa1451820 | 0.812953 | 3.270960e-51 | -8.615850e-47 |
Msa1074900 | Msa1454500 | 0.817745 | 2.811498e-52 | -8.615850e-47 |
Msa1074900 | Msa1457770 | 0.802142 | 6.454579e-49 | -8.615850e-47 |
Msa1074900 | Msa1464090 | 0.823923 | 1.066220e-53 | -8.615850e-47 |
Msa1074900 | Msa1465200 | 0.858851 | 6.201730e-63 | -8.615850e-47 |
Msa0241610 | Msa1074900 | 0.815000 | 1.156944e-51 | -8.615850e-47 |
Msa0249850 | Msa1074900 | 0.841730 | 3.979967e-58 | -8.615850e-47 |
Msa0263230 | Msa1074900 | 0.836908 | 7.102377e-57 | -8.615850e-47 |
Msa0263780 | Msa1074900 | 0.829455 | 5.099147e-55 | -8.615850e-47 |
Msa0269210 | Msa1074900 | 0.857740 | 1.328263e-62 | -8.615850e-47 |
Msa0281470 | Msa1074900 | 0.847933 | 8.450811e-60 | -8.615850e-47 |
Msa0288620 | Msa1074900 | 0.815157 | 1.067710e-51 | -8.615850e-47 |
Msa0301520 | Msa1074900 | 0.823372 | 1.435099e-53 | -8.615850e-47 |
Msa0307270 | Msa1074900 | 0.858220 | 9.568907e-63 | -8.615850e-47 |
Msa0320600 | Msa1074900 | 0.835198 | 1.929315e-56 | -8.615850e-47 |
Msa0326710 | Msa1074900 | 0.830388 | 3.020689e-55 | -8.615850e-47 |
Msa0336710 | Msa1074900 | 0.803441 | 3.481354e-49 | -8.615850e-47 |
Msa0339020 | Msa1074900 | 0.842769 | 2.112323e-58 | -8.615850e-47 |
Msa0341690 | Msa1074900 | 0.809689 | 1.671194e-50 | -8.615850e-47 |
Msa0361910 | Msa1074900 | 0.839035 | 2.015932e-57 | -8.615850e-47 |
Msa0500570 | Msa1074900 | 0.826601 | 2.479981e-54 | -8.615850e-47 |
Msa0500650 | Msa1074900 | 0.833851 | 4.206064e-56 | -8.615850e-47 |
Msa0502510 | Msa1074900 | 0.840832 | 6.854895e-58 | -8.615850e-47 |
Msa0508180 | Msa1074900 | 0.818335 | 2.067919e-52 | -8.615850e-47 |
Msa0509550 | Msa1074900 | 0.804356 | 2.247388e-49 | -8.615850e-47 |
Msa0514500 | Msa1074900 | 0.827628 | 1.408637e-54 | -8.615850e-47 |
Msa0519760 | Msa1074900 | 0.839836 | 1.248242e-57 | -8.615850e-47 |
Msa0519810 | Msa1074900 | 0.829757 | 4.306482e-55 | -8.615850e-47 |
Msa0519840 | Msa1074900 | 0.839235 | 1.788954e-57 | -8.615850e-47 |
Msa0529030 | Msa1074900 | 0.838806 | 2.310328e-57 | -8.615850e-47 |
Msa0534720 | Msa1074900 | 0.819360 | 1.209694e-52 | -8.615850e-47 |
Msa0567170 | Msa1074900 | 0.812480 | 4.151422e-51 | -8.615850e-47 |
Msa0574900 | Msa1074900 | 0.815356 | 9.640034e-52 | -8.615850e-47 |
Msa0579070 | Msa1074900 | -0.800180 | 1.626115e-48 | -8.615850e-47 |
Msa0580370 | Msa1074900 | 0.808396 | 3.161835e-50 | -8.615850e-47 |
Msa0586450 | Msa1074900 | 0.800961 | 1.127333e-48 | -8.615850e-47 |
Msa0591170 | Msa1074900 | 0.808223 | 3.441499e-50 | -8.615850e-47 |
Msa0850690 | Msa1074900 | 0.858115 | 1.028313e-62 | -8.615850e-47 |
Msa0851850 | Msa1074900 | 0.837985 | 3.762559e-57 | -8.615850e-47 |
Msa0865420 | Msa1074900 | 0.823432 | 1.389208e-53 | -8.615850e-47 |
Msa0878280 | Msa1074900 | 0.843092 | 1.733449e-58 | -8.615850e-47 |
Msa0880270 | Msa1074900 | 0.811864 | 5.656330e-51 | -8.615850e-47 |
Msa0902360 | Msa1074900 | 0.814664 | 1.373006e-51 | -8.615850e-47 |
Msa0944010 | Msa1074900 | 0.811550 | 6.619980e-51 | -8.615850e-47 |
Msa0945190 | Msa1074900 | 0.816388 | 5.675769e-52 | -8.615850e-47 |
Msa0959520 | Msa1074900 | 0.820636 | 6.176570e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1074900 | MtrunA17_Chr7g0258061 | 98.909 | 275 | 3 | 0 | 1 | 275 | 1 | 275 | 0.0 | 556 |
Msa1074900 | MtrunA17_Chr1g0173931 | 76.426 | 263 | 61 | 1 | 10 | 271 | 26 | 288 | 9.21e-140 | 395 |
Msa1074900 | MtrunA17_Chr3g0087741 | 56.716 | 67 | 29 | 0 | 21 | 87 | 88 | 154 | 8.10e-16 | 77.0 |
Msa1074900 | MtrunA17_Chr7g0269841 | 50.746 | 67 | 33 | 0 | 21 | 87 | 25 | 91 | 3.97e-15 | 74.3 |
Msa1074900 | MtrunA17_Chr2g0295821 | 44.898 | 98 | 47 | 4 | 24 | 119 | 106 | 198 | 1.67e-14 | 72.8 |
Msa1074900 | MtrunA17_Chr1g0209551 | 43.750 | 96 | 47 | 3 | 24 | 112 | 18 | 113 | 2.62e-14 | 72.4 |
Msa1074900 | MtrunA17_Chr7g0271891 | 52.308 | 65 | 27 | 2 | 24 | 84 | 18 | 82 | 3.61e-14 | 68.9 |
Msa1074900 | MtrunA17_Chr4g0010781 | 53.731 | 67 | 31 | 0 | 21 | 87 | 85 | 151 | 4.65e-14 | 71.6 |
Msa1074900 | MtrunA17_Chr8g0344721 | 37.273 | 110 | 59 | 3 | 16 | 119 | 4 | 109 | 8.99e-14 | 68.9 |
Msa1074900 | MtrunA17_Chr4g0040501 | 47.692 | 65 | 33 | 1 | 24 | 87 | 6 | 70 | 1.19e-12 | 67.0 |
Msa1074900 | MtrunA17_Chr7g0242951 | 53.125 | 64 | 29 | 1 | 24 | 87 | 29 | 91 | 1.42e-12 | 67.4 |
Msa1074900 | MtrunA17_Chr2g0282741 | 42.105 | 76 | 40 | 2 | 24 | 98 | 6 | 78 | 2.01e-12 | 66.2 |
Msa1074900 | MtrunA17_Chr8g0352451 | 51.562 | 64 | 31 | 0 | 24 | 87 | 74 | 137 | 2.38e-12 | 66.6 |
Msa1074900 | MtrunA17_Chr3g0138471 | 43.077 | 65 | 36 | 1 | 24 | 87 | 6 | 70 | 2.67e-12 | 65.9 |
Msa1074900 | MtrunA17_Chr2g0295831 | 34.783 | 115 | 64 | 3 | 24 | 136 | 112 | 217 | 3.31e-12 | 64.7 |
Msa1074900 | MtrunA17_Chr5g0414471 | 36.111 | 108 | 62 | 2 | 12 | 112 | 15 | 122 | 3.43e-12 | 65.9 |
Msa1074900 | MtrunA17_Chr5g0393371 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 4.70e-12 | 65.5 |
Msa1074900 | MtrunA17_Chr1g0159491 | 42.188 | 64 | 37 | 0 | 24 | 87 | 8 | 71 | 6.00e-12 | 60.5 |
Msa1074900 | MtrunA17_Chr2g0282761 | 46.154 | 65 | 34 | 1 | 24 | 87 | 6 | 70 | 6.31e-12 | 65.1 |
Msa1074900 | MtrunA17_Chr2g0324921 | 44.595 | 74 | 37 | 2 | 24 | 96 | 6 | 76 | 7.81e-12 | 64.7 |
Msa1074900 | MtrunA17_Chr6g0478651 | 50.000 | 66 | 28 | 2 | 24 | 87 | 70 | 132 | 1.62e-11 | 64.3 |
Msa1074900 | MtrunA17_Chr4g0006391 | 44.615 | 65 | 35 | 1 | 24 | 87 | 6 | 70 | 1.89e-11 | 63.5 |
Msa1074900 | MtrunA17_Chr3g0123861 | 46.875 | 64 | 33 | 1 | 24 | 87 | 84 | 146 | 6.25e-11 | 62.4 |
Msa1074900 | MtrunA17_Chr8g0334811 | 33.133 | 166 | 91 | 6 | 1 | 158 | 1 | 154 | 6.32e-11 | 62.4 |
Msa1074900 | MtrunA17_Chr5g0426951 | 45.455 | 66 | 36 | 0 | 20 | 85 | 81 | 146 | 7.58e-11 | 62.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1074900 | AT3G12170.1 | 73.251 | 243 | 64 | 1 | 20 | 261 | 9 | 251 | 1.05e-129 | 369 |
Msa1074900 | AT3G12170.2 | 73.251 | 243 | 64 | 1 | 20 | 261 | 45 | 287 | 1.01e-128 | 367 |
Msa1074900 | AT5G06910.1 | 64.894 | 282 | 87 | 4 | 1 | 270 | 1 | 282 | 4.86e-118 | 340 |
Msa1074900 | AT5G48030.1 | 58.209 | 67 | 28 | 0 | 21 | 87 | 93 | 159 | 1.29e-15 | 76.6 |
Msa1074900 | AT1G59980.2 | 40.625 | 96 | 50 | 2 | 24 | 112 | 25 | 120 | 5.77e-15 | 74.3 |
Msa1074900 | AT1G59980.1 | 40.625 | 96 | 50 | 2 | 24 | 112 | 25 | 120 | 6.11e-15 | 74.7 |
Msa1074900 | AT1G56300.1 | 47.826 | 69 | 32 | 2 | 20 | 84 | 11 | 79 | 1.41e-14 | 70.1 |
Msa1074900 | AT1G56300.2 | 47.826 | 69 | 32 | 2 | 20 | 84 | 11 | 79 | 1.48e-14 | 68.9 |
Msa1074900 | AT5G03160.1 | 50.685 | 73 | 35 | 1 | 20 | 91 | 368 | 440 | 2.46e-14 | 73.2 |
Msa1074900 | AT3G14200.1 | 49.351 | 77 | 36 | 1 | 20 | 93 | 10 | 86 | 3.25e-14 | 70.9 |
Msa1074900 | AT3G62600.1 | 50.746 | 67 | 33 | 0 | 21 | 87 | 25 | 91 | 4.47e-14 | 71.6 |
Msa1074900 | AT4G39150.3 | 53.125 | 64 | 30 | 0 | 24 | 87 | 8 | 71 | 4.80e-14 | 71.6 |
Msa1074900 | AT4G39150.1 | 53.125 | 64 | 30 | 0 | 24 | 87 | 8 | 71 | 4.80e-14 | 71.6 |
Msa1074900 | AT4G39150.2 | 53.125 | 64 | 30 | 0 | 24 | 87 | 8 | 71 | 4.80e-14 | 71.6 |
Msa1074900 | AT5G01390.3 | 46.970 | 66 | 34 | 1 | 23 | 87 | 5 | 70 | 2.60e-13 | 68.2 |
Msa1074900 | AT2G21510.2 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 3.40e-13 | 69.3 |
Msa1074900 | AT2G21510.4 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 3.40e-13 | 69.3 |
Msa1074900 | AT2G21510.3 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 3.45e-13 | 68.9 |
Msa1074900 | AT2G21510.1 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 3.45e-13 | 68.9 |
Msa1074900 | AT5G01390.4 | 46.970 | 66 | 34 | 1 | 23 | 87 | 5 | 70 | 3.49e-13 | 67.8 |
Msa1074900 | AT2G21510.5 | 50.000 | 64 | 32 | 0 | 24 | 87 | 8 | 71 | 4.16e-13 | 68.6 |
Msa1074900 | AT1G68370.1 | 42.708 | 96 | 48 | 3 | 24 | 112 | 19 | 114 | 4.36e-13 | 68.9 |
Msa1074900 | AT5G01390.2 | 46.970 | 66 | 34 | 1 | 23 | 87 | 5 | 70 | 5.06e-13 | 68.2 |
Msa1074900 | AT5G49060.2 | 48.611 | 72 | 32 | 2 | 24 | 93 | 101 | 169 | 5.09e-13 | 68.6 |
Msa1074900 | AT5G49060.1 | 48.611 | 72 | 32 | 2 | 24 | 93 | 101 | 169 | 5.09e-13 | 68.6 |
Msa1074900 | AT5G01390.1 | 46.970 | 66 | 34 | 1 | 23 | 87 | 5 | 70 | 7.63e-13 | 68.2 |
Msa1074900 | AT4G28480.2 | 41.975 | 81 | 43 | 2 | 24 | 103 | 6 | 83 | 1.34e-12 | 67.0 |
Msa1074900 | AT4G28480.1 | 41.975 | 81 | 43 | 2 | 24 | 103 | 6 | 83 | 1.58e-12 | 67.0 |
Msa1074900 | AT1G77020.1 | 51.562 | 64 | 31 | 0 | 24 | 87 | 8 | 71 | 1.90e-12 | 67.0 |
Msa1074900 | AT1G21080.3 | 37.931 | 87 | 51 | 1 | 23 | 109 | 7 | 90 | 2.22e-12 | 67.0 |
Msa1074900 | AT1G21080.1 | 37.931 | 87 | 51 | 1 | 23 | 109 | 7 | 90 | 2.25e-12 | 67.0 |
Msa1074900 | AT3G08910.1 | 46.154 | 65 | 34 | 1 | 24 | 87 | 6 | 70 | 3.41e-12 | 65.9 |
Msa1074900 | AT1G76700.1 | 48.438 | 64 | 33 | 0 | 24 | 87 | 8 | 71 | 4.78e-12 | 65.9 |
Msa1074900 | AT5G16650.1 | 40.789 | 76 | 45 | 0 | 13 | 88 | 2 | 77 | 7.87e-12 | 61.6 |
Msa1074900 | AT2G20560.1 | 36.792 | 106 | 61 | 3 | 24 | 128 | 6 | 106 | 9.67e-12 | 64.7 |
Msa1074900 | AT5G25530.2 | 44.615 | 65 | 35 | 1 | 24 | 87 | 6 | 70 | 1.12e-11 | 64.7 |
Msa1074900 | AT5G16650.2 | 40.789 | 76 | 45 | 0 | 13 | 88 | 2 | 77 | 2.57e-11 | 61.2 |
Msa1074900 | AT1G80030.4 | 50.000 | 66 | 28 | 2 | 24 | 87 | 77 | 139 | 2.72e-11 | 63.9 |
Msa1074900 | AT1G80030.2 | 50.000 | 66 | 28 | 2 | 24 | 87 | 77 | 139 | 2.85e-11 | 63.9 |
Msa1074900 | AT1G80030.3 | 50.000 | 66 | 28 | 2 | 24 | 87 | 77 | 139 | 2.85e-11 | 63.9 |
Msa1074900 | AT1G80030.1 | 50.000 | 66 | 28 | 2 | 24 | 87 | 77 | 139 | 2.85e-11 | 63.9 |
Msa1074900 | AT4G39960.1 | 39.560 | 91 | 50 | 3 | 23 | 109 | 86 | 175 | 3.81e-11 | 63.5 |
Msa1074900 | AT4G39960.2 | 39.560 | 91 | 50 | 3 | 23 | 109 | 86 | 175 | 3.81e-11 | 63.5 |
Msa1074900 | AT3G08970.1 | 51.562 | 64 | 30 | 1 | 24 | 87 | 29 | 91 | 3.97e-11 | 63.5 |
Msa1074900 | AT3G08970.2 | 51.562 | 64 | 30 | 1 | 24 | 87 | 29 | 91 | 3.97e-11 | 63.5 |
Msa1074900 | AT1G59725.1 | 42.424 | 66 | 36 | 1 | 24 | 87 | 6 | 71 | 6.31e-11 | 62.4 |
Msa1074900 | AT2G22360.1 | 48.438 | 64 | 32 | 1 | 24 | 87 | 88 | 150 | 7.49e-11 | 62.4 |
Find 61 sgRNAs with CRISPR-Local
Find 195 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TACTTTGCCTTCCTCTTTAA+AGG | 0.137096 | 7_2:+72970885 | None:intergenic |
ATACTTCCTTAGCCCATTTC+TGG | 0.179895 | 7_2:+72970931 | None:intergenic |
CCCGCTATAATTTACGATTC+AGG | 0.236137 | 7_2:+72973763 | None:intergenic |
TAATTCTGCAGGAGAATTAA+AGG | 0.256912 | 7_2:-72970967 | Msa1074900:intron |
AAAGAAGGCTTATTACAAAT+TGG | 0.280754 | 7_2:-72972809 | Msa1074900:CDS |
ACACAGAGAGATTTGTTTGA+TGG | 0.322319 | 7_2:+72973642 | None:intergenic |
CAACAAAAGCCTACCAGAAA+TGG | 0.329929 | 7_2:-72970944 | Msa1074900:CDS |
AATTCCTCTTCAGAGGGTTC+TGG | 0.332420 | 7_2:+72970664 | None:intergenic |
TCATCACCAGGATTCTTATC+TGG | 0.362396 | 7_2:+72972772 | None:intergenic |
ACTGACCTTTCCTCTCATTT+CGG | 0.368205 | 7_2:+72970737 | None:intergenic |
TAAAGGACTTGTGGGTGGTT+TGG | 0.373974 | 7_2:+72970902 | None:intergenic |
TTCCTCTTTAAAGGACTTGT+GGG | 0.398805 | 7_2:+72970894 | None:intergenic |
TTTCTCTTCGTCTCCAAGAA+TGG | 0.400542 | 7_2:+72972603 | None:intergenic |
ACTTGACTCACACCGATTCA+AGG | 0.428801 | 7_2:-72971588 | Msa1074900:CDS |
TAACGGCGGGAAAAGAATAA+AGG | 0.432023 | 7_2:-72973792 | None:intergenic |
CTTCCTCTTTAAAGGACTTG+TGG | 0.442578 | 7_2:+72970893 | None:intergenic |
ATCTTCAATTTCTTCATCAT+CGG | 0.442588 | 7_2:+72973586 | None:intergenic |
TTCTTGGAGACGAAGAGAAA+CGG | 0.455460 | 7_2:-72972600 | Msa1074900:CDS |
GGTTCTTGGGTTGGAGAAAA+CGG | 0.460667 | 7_2:-72972848 | Msa1074900:CDS |
TCTTGGAGACGAAGAGAAAC+GGG | 0.461614 | 7_2:-72972599 | Msa1074900:CDS |
GCGTCTCTAGTATCAAAGTA+TGG | 0.472145 | 7_2:-72970700 | Msa1074900:CDS |
TGGCGCCGAGGAAGAAAACT+AGG | 0.485201 | 7_2:-72973613 | Msa1074900:CDS |
AACAAAAGCCTACCAGAAAT+GGG | 0.487122 | 7_2:-72970943 | Msa1074900:CDS |
TTTCAAAACAATGTACAAGA+AGG | 0.494913 | 7_2:-72971923 | Msa1074900:intron |
TCATTTCTGCGGATCTACTC+TGG | 0.504619 | 7_2:-72970470 | Msa1074900:three_prime_UTR |
TATGTGCAATGTAGTGTGAC+TGG | 0.506719 | 7_2:-72970437 | Msa1074900:three_prime_UTR |
CATCAAGAATGTCCTTGAAT+CGG | 0.509603 | 7_2:+72971576 | None:intergenic |
CTTCTTTATTTCTTGTTGAG+AGG | 0.513111 | 7_2:+72972825 | None:intergenic |
CTCTTTAAAGGACTTGTGGG+TGG | 0.519289 | 7_2:+72970897 | None:intergenic |
AGTACAAGGGGAATATGAAA+AGG | 0.520113 | 7_2:-72971731 | Msa1074900:intron |
CTTGATGAGGCTATAGCTGC+TGG | 0.521762 | 7_2:-72971560 | Msa1074900:intron |
CACCCACAAGTCCTTTAAAG+AGG | 0.526019 | 7_2:-72970896 | Msa1074900:CDS |
CTCCATCCAGATAAGAATCC+TGG | 0.528887 | 7_2:-72972778 | Msa1074900:CDS |
AGCTTCAAATTCCTCTTCAG+AGG | 0.534350 | 7_2:+72970657 | None:intergenic |
CACCAGGATTCTTATCTGGA+TGG | 0.539771 | 7_2:+72972776 | None:intergenic |
GGAGTTTGAAGCAAACTACC+GGG | 0.541480 | 7_2:-72971796 | Msa1074900:CDS |
CCTGAATCGTAAATTATAGC+GGG | 0.543962 | 7_2:-72973763 | Msa1074900:five_prime_UTR |
CACAAGTCCTTTAAAGAGGA+AGG | 0.544290 | 7_2:-72970892 | Msa1074900:CDS |
GCTTCAAATTCCTCTTCAGA+GGG | 0.547917 | 7_2:+72970658 | None:intergenic |
ACCTCAAAAGACTCTCTACC+AGG | 0.549839 | 7_2:-72973561 | Msa1074900:intron |
AGGAGTTTGAAGCAAACTAC+CGG | 0.550523 | 7_2:-72971797 | Msa1074900:CDS |
ACATTTGATTACTACATGAA+AGG | 0.552769 | 7_2:+72970508 | None:intergenic |
GTAATCAAATGTTAGTGTAA+TGG | 0.563971 | 7_2:-72970497 | Msa1074900:three_prime_UTR |
TTCCTTAGCCCATTTCTGGT+AGG | 0.565926 | 7_2:+72970935 | None:intergenic |
TCTGTTAATCAGGATCTGGC+AGG | 0.566964 | 7_2:-72971970 | Msa1074900:intron |
GTAATGGTTGTTCATTTCTG+CGG | 0.569247 | 7_2:-72970481 | Msa1074900:three_prime_UTR |
CTTATTACAAATTGGCATTG+CGG | 0.571383 | 7_2:-72972801 | Msa1074900:CDS |
AGCCTACCAGAAATGGGCTA+AGG | 0.571998 | 7_2:-72970937 | Msa1074900:CDS |
CTCTCAACAAGAAATAAAGA+AGG | 0.577556 | 7_2:-72972824 | Msa1074900:CDS |
GGTCACTGAAGCTGATATTG+AGG | 0.586002 | 7_2:-72971817 | Msa1074900:CDS |
CGGGCTCTCTATGATCAGAC+TGG | 0.592329 | 7_2:-72972580 | Msa1074900:CDS |
TTGTGTGAAGTGTGAGAACA+TGG | 0.609468 | 7_2:-72970539 | Msa1074900:three_prime_UTR |
TATCACAACGCCGAAATGAG+AGG | 0.612937 | 7_2:-72970747 | Msa1074900:CDS |
ACCTGAATCGTAAATTATAG+CGG | 0.612965 | 7_2:-72973764 | Msa1074900:five_prime_UTR |
TATGCCAGAACCCTCTGAAG+AGG | 0.616007 | 7_2:-72970668 | Msa1074900:CDS |
ATTCAAGGACATTCTTGATG+AGG | 0.621008 | 7_2:-72971573 | Msa1074900:CDS |
AGATAAGAATCCTGGTGATG+AGG | 0.625604 | 7_2:-72972770 | Msa1074900:intron |
CAACGCCGAAATGAGAGGAA+AGG | 0.636406 | 7_2:-72970742 | Msa1074900:CDS |
TCTCTAGTATCAAAGTATGG+TGG | 0.654748 | 7_2:-72970697 | Msa1074900:CDS |
GGCGCCGAGGAAGAAAACTA+GGG | 0.675011 | 7_2:-72973612 | Msa1074900:CDS |
GAGTTTGAAGCAAACTACCG+GGG | 0.707683 | 7_2:-72971795 | Msa1074900:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATATTTTATTATTTGTTTGT+TGG | - | chr7_2:72971421-72971440 | Msa1074900:intron | 10.0% |
!!! | ATTTTTAAACAAAAAGTTTG+TGG | + | chr7_2:72970396-72970415 | None:intergenic | 15.0% |
!!! | TGCTTAAATTTATTATTTTG+CGG | - | chr7_2:72970985-72971004 | Msa1074900:intron | 15.0% |
!!! | AATTTAAGAGTATTAATTGT+TGG | + | chr7_2:72972990-72973009 | None:intergenic | 15.0% |
!! | AACAATTAATACTCTTAAAT+TGG | - | chr7_2:72972989-72973008 | Msa1074900:intron | 15.0% |
!!! | GTCTGTTAAATTTTATTTGA+GGG | - | chr7_2:72971717-72971736 | Msa1074900:intron | 20.0% |
!! | ATCAGAATATAGGAATATAA+TGG | - | chr7_2:72971759-72971778 | Msa1074900:CDS | 20.0% |
!!! | AAGAAAGCATTATTAATTTG+TGG | - | chr7_2:72972421-72972440 | Msa1074900:intron | 20.0% |
!!! | CCATAGAAAAGTATTTATAA+TGG | + | chr7_2:72973098-72973117 | None:intergenic | 20.0% |
!!! | CCATTATAAATACTTTTCTA+TGG | - | chr7_2:72973095-72973114 | Msa1074900:intron | 20.0% |
!!! | TTAATTGATTTACTCTGTAA+TGG | - | chr7_2:72973295-72973314 | Msa1074900:intron | 20.0% |
! | ATCTTCAATTTCTTCATCAT+CGG | + | chr7_2:72970545-72970564 | None:intergenic | 25.0% |
! | AATACAAACTTTGTTCAACA+TGG | + | chr7_2:72970767-72970786 | None:intergenic | 25.0% |
!!! | TTGTATTTTTGTGTGTGTTA+AGG | - | chr7_2:72970780-72970799 | Msa1074900:CDS | 25.0% |
!! | TTGATCTGTGAAATTTTCAA+TGG | - | chr7_2:72970888-72970907 | Msa1074900:CDS | 25.0% |
!! | TTGGATCTTTTGTAATATCT+TGG | - | chr7_2:72971016-72971035 | Msa1074900:intron | 25.0% |
!!! | TGGTTAAACCTTTTTTTCAA+TGG | - | chr7_2:72971136-72971155 | Msa1074900:intron | 25.0% |
! | CAAATGATCCATTGAAAAAA+AGG | + | chr7_2:72971147-72971166 | None:intergenic | 25.0% |
!!! | CTTTTTTTCAATGGATCATT+TGG | - | chr7_2:72971145-72971164 | Msa1074900:intron | 25.0% |
!!! | GTCAAGAATTATTTTTGTTG+AGG | + | chr7_2:72971207-72971226 | None:intergenic | 25.0% |
! | AAAGAAGGCTTATTACAAAT+TGG | - | chr7_2:72971319-72971338 | Msa1074900:intron | 25.0% |
!!! | TATTTGTTTGTTGGCTTTTT+TGG | - | chr7_2:72971430-72971449 | Msa1074900:intron | 25.0% |
!!! | ATTTGTTTGTTGGCTTTTTT+GGG | - | chr7_2:72971431-72971450 | Msa1074900:intron | 25.0% |
!! | AAATAACTTTTTGCAATTGC+TGG | + | chr7_2:72971505-72971524 | None:intergenic | 25.0% |
!! | CAAAAAGTTATTTCCATTCT+TGG | - | chr7_2:72971512-72971531 | Msa1074900:intron | 25.0% |
! | ATAAAATTTAACAGACCACA+AGG | + | chr7_2:72971713-72971732 | None:intergenic | 25.0% |
!!! | GGTCTGTTAAATTTTATTTG+AGG | - | chr7_2:72971716-72971735 | Msa1074900:intron | 25.0% |
! | ATACTACTGAATCAGAATAT+AGG | - | chr7_2:72971749-72971768 | Msa1074900:CDS | 25.0% |
!! | TAGGAATATAATGGTGTTAA+CGG | - | chr7_2:72971768-72971787 | Msa1074900:CDS | 25.0% |
! | TATGGGCATACATATATAAT+TGG | + | chr7_2:72971880-72971899 | None:intergenic | 25.0% |
! | TTTCAAAACAATGTACAAGA+AGG | - | chr7_2:72972205-72972224 | Msa1074900:intron | 25.0% |
! | TTTAGTCAGATATTTGGTAT+AGG | - | chr7_2:72972625-72972644 | Msa1074900:CDS | 25.0% |
! | AATTAGCATATTAACTCCTT+TGG | - | chr7_2:72972763-72972782 | Msa1074900:intron | 25.0% |
! | CTTTCTTAGAAAAATACCAA+AGG | + | chr7_2:72972782-72972801 | None:intergenic | 25.0% |
! | ACATCATTATCTATGTTAAC+TGG | + | chr7_2:72972958-72972977 | None:intergenic | 25.0% |
! | TTTGCTTAAATACCAAAATC+TGG | - | chr7_2:72973069-72973088 | Msa1074900:intron | 25.0% |
! | CATTAAACAAACAATCATCA+AGG | + | chr7_2:72973135-72973154 | None:intergenic | 25.0% |
! | ATTTGACCTATAAAAAGCAA+TGG | + | chr7_2:72973330-72973349 | None:intergenic | 25.0% |
!!! | TGATTGCTTTGATTTTTTTG+AGG | + | chr7_2:72973525-72973544 | None:intergenic | 25.0% |
! | ACATTTGATTACTACATGAA+AGG | + | chr7_2:72973623-72973642 | None:intergenic | 25.0% |
! | GTAATCAAATGTTAGTGTAA+TGG | - | chr7_2:72973631-72973650 | Msa1074900:exon | 25.0% |
ACCTGAATCGTAAATTATAG+CGG | - | chr7_2:72970364-72970383 | Msa1074900:three_prime_UTR | 30.0% | |
AAATCTCTCTGTGTGAAAAA+TGG | - | chr7_2:72970495-72970514 | Msa1074900:three_prime_UTR | 30.0% | |
! | TCTGTGAAATTTTCAATGGA+AGG | - | chr7_2:72970892-72970911 | Msa1074900:CDS | 30.0% |
!! | TTATTTTGCGGCTAATTTCT+TGG | - | chr7_2:72970997-72971016 | Msa1074900:intron | 30.0% |
! | CTTTTGTAATATCTTGGTCT+TGG | - | chr7_2:72971022-72971041 | Msa1074900:intron | 30.0% |
! | AACCAGAGAACAAAGATTTT+TGG | + | chr7_2:72971071-72971090 | None:intergenic | 30.0% |
!! | ATAGGTTCTAGATTTGTTCT+TGG | - | chr7_2:72971116-72971135 | Msa1074900:intron | 30.0% |
ACAAGTGGAACAAATAACAA+TGG | + | chr7_2:72971179-72971198 | None:intergenic | 30.0% | |
ACCTAAAATGAAGTCAACAA+CGG | + | chr7_2:72971263-72971282 | None:intergenic | 30.0% | |
!!! | TTGACTTCATTTTAGGTTCT+TGG | - | chr7_2:72971266-72971285 | Msa1074900:intron | 30.0% |
!!! | TGACTTCATTTTAGGTTCTT+GGG | - | chr7_2:72971267-72971286 | Msa1074900:intron | 30.0% |
! | CTTCTTTATTTCTTGTTGAG+AGG | + | chr7_2:72971306-72971325 | None:intergenic | 30.0% |
CTCTCAACAAGAAATAAAGA+AGG | - | chr7_2:72971304-72971323 | Msa1074900:intron | 30.0% | |
CTTATTACAAATTGGCATTG+CGG | - | chr7_2:72971327-72971346 | Msa1074900:intron | 30.0% | |
GTAATTACTTGTGTTCATAC+AGG | - | chr7_2:72971463-72971482 | Msa1074900:intron | 30.0% | |
CTGTTCAAGATGAATTAATC+CGG | - | chr7_2:72971640-72971659 | Msa1074900:intron | 30.0% | |
ATTAATCCGGCATAATATGT+TGG | - | chr7_2:72971653-72971672 | Msa1074900:intron | 30.0% | |
GTAAATCCAACATATTATGC+CGG | + | chr7_2:72971662-72971681 | None:intergenic | 30.0% | |
GATTTACAATTTGAATGCCT+AGG | - | chr7_2:72971675-72971694 | Msa1074900:intron | 30.0% | |
ATTACAAAGTGGAAATTGAG+AGG | + | chr7_2:72971832-72971851 | None:intergenic | 30.0% | |
GGCATACATATATAATTGGA+AGG | + | chr7_2:72971876-72971895 | None:intergenic | 30.0% | |
TGTCCAAAATGCTAATTGTT+GGG | + | chr7_2:72972090-72972109 | None:intergenic | 30.0% | |
CATTATCTCTTCTGTTAATC+AGG | - | chr7_2:72972148-72972167 | Msa1074900:intron | 30.0% | |
!!! | GCATTAGTCATTTTTGTAAG+AGG | - | chr7_2:72972447-72972466 | Msa1074900:intron | 30.0% |
TATCTGACTAAAACCTTGTT+CGG | + | chr7_2:72972617-72972636 | None:intergenic | 30.0% | |
!! | CAAGGTTTTAGTCAGATATT+TGG | - | chr7_2:72972619-72972638 | Msa1074900:CDS | 30.0% |
CTAAAAGCAAAATAACTGCA+AGG | + | chr7_2:72972731-72972750 | None:intergenic | 30.0% | |
!! | CTTGCAGTTATTTTGCTTTT+AGG | - | chr7_2:72972729-72972748 | Msa1074900:intron | 30.0% |
!! | TTTACTTGGTCTTGATGATT+TGG | + | chr7_2:72972806-72972825 | None:intergenic | 30.0% |
!! | TTTACTTGGTCTTGATGATT+TGG | + | chr7_2:72972806-72972825 | None:intergenic | 30.0% |
!!! | CGAGTATTGTGAGTATTTTT+TGG | + | chr7_2:72972916-72972935 | None:intergenic | 30.0% |
GGTCTATGTTTCTTATAACT+AGG | - | chr7_2:72973010-72973029 | Msa1074900:intron | 30.0% | |
!!! | TTATAATGGACTCCAGATTT+TGG | + | chr7_2:72973084-72973103 | None:intergenic | 30.0% |
TAATGTTCTCTTAATTCTGC+AGG | - | chr7_2:72973150-72973169 | Msa1074900:intron | 30.0% | |
TAATTCTGCAGGAGAATTAA+AGG | - | chr7_2:72973161-72973180 | Msa1074900:intron | 30.0% | |
TTAATAGAACAAGCAAAACC+CGG | + | chr7_2:72973279-72973298 | None:intergenic | 30.0% | |
!!! | ACTGATCCATTGCTTTTTAT+AGG | - | chr7_2:72973321-72973340 | Msa1074900:intron | 30.0% |
CCTGAATCGTAAATTATAGC+GGG | - | chr7_2:72970365-72970384 | Msa1074900:three_prime_UTR | 35.0% | |
! | ACACAGAGAGATTTGTTTGA+TGG | + | chr7_2:72970489-72970508 | None:intergenic | 35.0% |
AGCGAAATGAAAATTTGCAG+AGG | + | chr7_2:72970621-72970640 | None:intergenic | 35.0% | |
!!! | TCTTGGTCTTGGATCTTTTT+TGG | - | chr7_2:72971033-72971052 | Msa1074900:intron | 35.0% |
!!! | CTTGGTCTTGGATCTTTTTT+GGG | - | chr7_2:72971034-72971053 | Msa1074900:intron | 35.0% |
!! | AAAGATTTTTGGACGCAGTT+TGG | + | chr7_2:72971060-72971079 | None:intergenic | 35.0% |
GTCCAAAAATCTTTGTTCTC+TGG | - | chr7_2:72971066-72971085 | Msa1074900:intron | 35.0% | |
! | TGTTCTCTGGTTTGATTGTT+TGG | - | chr7_2:72971079-72971098 | Msa1074900:intron | 35.0% |
TTAGCATGTGTTTAGATGCA+CGG | + | chr7_2:72971238-72971257 | None:intergenic | 35.0% | |
!!! | TCCGTTGTTGACTTCATTTT+AGG | - | chr7_2:72971259-72971278 | Msa1074900:intron | 35.0% |
!!! | TTCATTTTAGGTTCTTGGGT+TGG | - | chr7_2:72971271-72971290 | Msa1074900:intron | 35.0% |
TAAAAAATCACCTCATCACC+AGG | + | chr7_2:72971371-72971390 | None:intergenic | 35.0% | |
!!! | GGTGATGAGGTGATTTTTTA+AGG | - | chr7_2:72971371-72971390 | Msa1074900:intron | 35.0% |
ATTACTTGTGTTCATACAGG+AGG | - | chr7_2:72971466-72971485 | Msa1074900:intron | 35.0% | |
CAGAATCTCAGATTACAAAG+TGG | + | chr7_2:72971843-72971862 | None:intergenic | 35.0% | |
TGTTAAGCGAGACAGAATAT+GGG | + | chr7_2:72971897-72971916 | None:intergenic | 35.0% | |
ATGTTAAGCGAGACAGAATA+TGG | + | chr7_2:72971898-72971917 | None:intergenic | 35.0% | |
GCTTAACATGTTCATTCAGA+CGG | - | chr7_2:72971909-72971928 | Msa1074900:intron | 35.0% | |
CTTAACATGTTCATTCAGAC+GGG | - | chr7_2:72971910-72971929 | Msa1074900:intron | 35.0% | |
! | ATGCCCAACAATTAGCATTT+TGG | - | chr7_2:72972084-72972103 | Msa1074900:intron | 35.0% |
GTGTCCAAAATGCTAATTGT+TGG | + | chr7_2:72972091-72972110 | None:intergenic | 35.0% | |
!! | GTTGTTTTGTAATGAACCAC+AGG | - | chr7_2:72972290-72972309 | Msa1074900:intron | 35.0% |
! | TGAGCTGTACAAAAAGTACA+AGG | - | chr7_2:72972383-72972402 | Msa1074900:intron | 35.0% |
! | GAGCTGTACAAAAAGTACAA+GGG | - | chr7_2:72972384-72972403 | Msa1074900:intron | 35.0% |
! | AGCTGTACAAAAAGTACAAG+GGG | - | chr7_2:72972385-72972404 | Msa1074900:intron | 35.0% |
AGTACAAGGGGAATATGAAA+AGG | - | chr7_2:72972397-72972416 | Msa1074900:intron | 35.0% | |
CATCAAGAATGTCCTTGAAT+CGG | + | chr7_2:72972555-72972574 | None:intergenic | 35.0% | |
ATTCAAGGACATTCTTGATG+AGG | - | chr7_2:72972555-72972574 | Msa1074900:intron | 35.0% | |
! | TAACTAGATTTTGCCGAACA+AGG | - | chr7_2:72972601-72972620 | Msa1074900:CDS | 35.0% |
AAAAGCAAGTCAGTAGATAG+TGG | - | chr7_2:72972701-72972720 | Msa1074900:intron | 35.0% | |
AAAGCAAGTCAGTAGATAGT+GGG | - | chr7_2:72972702-72972721 | Msa1074900:intron | 35.0% | |
!! | GACCAAGTAAAAGCATTTGA+AGG | - | chr7_2:72972815-72972834 | Msa1074900:CDS | 35.0% |
! | CTCCTTCAAATGCTTTTACT+TGG | + | chr7_2:72972820-72972839 | None:intergenic | 35.0% |
!! | GACCAAGTAAAAGCATTTGA+AGG | - | chr7_2:72972815-72972834 | Msa1074900:CDS | 35.0% |
! | CTCCTTCAAATGCTTTTACT+TGG | + | chr7_2:72972820-72972839 | None:intergenic | 35.0% |
AACAAAAGCCTACCAGAAAT+GGG | - | chr7_2:72973185-72973204 | Msa1074900:intron | 35.0% | |
! | TTCCTCTTTAAAGGACTTGT+GGG | + | chr7_2:72973237-72973256 | None:intergenic | 35.0% |
TACTTTGCCTTCCTCTTTAA+AGG | + | chr7_2:72973246-72973265 | None:intergenic | 35.0% | |
TCTCTAGTATCAAAGTATGG+TGG | - | chr7_2:72973431-72973450 | Msa1074900:intron | 35.0% | |
TGCACAGAAAAAGTTGGAAA+AGG | - | chr7_2:72973493-72973512 | Msa1074900:intron | 35.0% | |
GCACAGAAAAAGTTGGAAAA+GGG | - | chr7_2:72973494-72973513 | Msa1074900:intron | 35.0% | |
GTAATGGTTGTTCATTTCTG+CGG | - | chr7_2:72973647-72973666 | Msa1074900:five_prime_UTR | 35.0% | |
CCCGCTATAATTTACGATTC+AGG | + | chr7_2:72970368-72970387 | None:intergenic | 40.0% | |
!! | GAAACCCTAGTTTTCTTCCT+CGG | + | chr7_2:72970523-72970542 | None:intergenic | 40.0% |
! | GAAGGCTAGACTAGAGTATT+GGG | - | chr7_2:72970910-72970929 | Msa1074900:CDS | 40.0% |
TTGGAATTGCACTTGCACAT+AGG | - | chr7_2:72971098-72971117 | Msa1074900:intron | 40.0% | |
TTTGTTGAGGAGTCAACAAG+TGG | + | chr7_2:72971194-72971213 | None:intergenic | 40.0% | |
TCATCACCAGGATTCTTATC+TGG | + | chr7_2:72971359-72971378 | None:intergenic | 40.0% | |
! | AGATAAGAATCCTGGTGATG+AGG | - | chr7_2:72971358-72971377 | Msa1074900:intron | 40.0% |
!!! | GTTTGTTGGCTTTTTTGGGT+TGG | - | chr7_2:72971435-72971454 | Msa1074900:intron | 40.0% |
TTTCTCTTCGTCTCCAAGAA+TGG | + | chr7_2:72971528-72971547 | None:intergenic | 40.0% | |
TTCTTGGAGACGAAGAGAAA+CGG | - | chr7_2:72971528-72971547 | Msa1074900:intron | 40.0% | |
!! | TGCATTGATGATGATGTGAG+TGG | - | chr7_2:72971572-72971591 | Msa1074900:CDS | 40.0% |
!! | CAAGGACTTGCTAAAAACCT+AGG | + | chr7_2:72971695-72971714 | None:intergenic | 40.0% |
!!! | AGGTTTTTAGCAAGTCCTTG+TGG | - | chr7_2:72971695-72971714 | Msa1074900:intron | 40.0% |
CTCTTCTGTTAATCAGGATC+TGG | - | chr7_2:72972154-72972173 | Msa1074900:intron | 40.0% | |
TACCACAATGCATCAGGAAA+GGG | + | chr7_2:72972253-72972272 | None:intergenic | 40.0% | |
ATACCACAATGCATCAGGAA+AGG | + | chr7_2:72972254-72972273 | None:intergenic | 40.0% | |
CATGTATACCACAATGCATC+AGG | + | chr7_2:72972259-72972278 | None:intergenic | 40.0% | |
! | AGGAGTTTGAAGCAAACTAC+CGG | - | chr7_2:72972331-72972350 | Msa1074900:intron | 40.0% |
ATAGGTCTTAGTTTCTACGC+AGG | - | chr7_2:72972643-72972662 | Msa1074900:CDS | 40.0% | |
CAACAAAAGCCTACCAGAAA+TGG | - | chr7_2:72973184-72973203 | Msa1074900:intron | 40.0% | |
ATACTTCCTTAGCCCATTTC+TGG | + | chr7_2:72973200-72973219 | None:intergenic | 40.0% | |
! | CTTCCTCTTTAAAGGACTTG+TGG | + | chr7_2:72973238-72973257 | None:intergenic | 40.0% |
! | CACAAGTCCTTTAAAGAGGA+AGG | - | chr7_2:72973236-72973255 | Msa1074900:intron | 40.0% |
!! | GGCAAAGTAAGTTGATCAAC+CGG | - | chr7_2:72973257-72973276 | Msa1074900:intron | 40.0% |
!! | GCAAAGTAAGTTGATCAACC+GGG | - | chr7_2:72973258-72973277 | Msa1074900:intron | 40.0% |
ACTGACCTTTCCTCTCATTT+CGG | + | chr7_2:72973394-72973413 | None:intergenic | 40.0% | |
GCGTCTCTAGTATCAAAGTA+TGG | - | chr7_2:72973428-72973447 | Msa1074900:intron | 40.0% | |
GCTTCAAATTCCTCTTCAGA+GGG | + | chr7_2:72973473-72973492 | None:intergenic | 40.0% | |
AGCTTCAAATTCCTCTTCAG+AGG | + | chr7_2:72973474-72973493 | None:intergenic | 40.0% | |
TGAAGCTGCACAGAAAAAGT+TGG | - | chr7_2:72973487-72973506 | Msa1074900:intron | 40.0% | |
TTGTGTGAAGTGTGAGAACA+TGG | - | chr7_2:72973589-72973608 | Msa1074900:CDS | 40.0% | |
TATGTGCAATGTAGTGTGAC+TGG | - | chr7_2:72973691-72973710 | Msa1074900:five_prime_UTR | 40.0% | |
ACCTCAAAAGACTCTCTACC+AGG | - | chr7_2:72970567-72970586 | Msa1074900:three_prime_UTR | 45.0% | |
! | ACCTGGTAGAGAGTCTTTTG+AGG | + | chr7_2:72970571-72970590 | None:intergenic | 45.0% |
AAGCGTGAATTTGCGATACC+TGG | + | chr7_2:72970588-72970607 | None:intergenic | 45.0% | |
GGAAGGCTAGACTAGAGTAT+TGG | - | chr7_2:72970909-72970928 | Msa1074900:CDS | 45.0% | |
!! | GGTTCTTGGGTTGGAGAAAA+CGG | - | chr7_2:72971280-72971299 | Msa1074900:intron | 45.0% |
CTCCATCCAGATAAGAATCC+TGG | - | chr7_2:72971350-72971369 | Msa1074900:intron | 45.0% | |
CACCAGGATTCTTATCTGGA+TGG | + | chr7_2:72971355-72971374 | None:intergenic | 45.0% | |
!! | TAAGGCTGCTTGTTATGCTG+TGG | - | chr7_2:72971389-72971408 | Msa1074900:intron | 45.0% |
TCTTGGAGACGAAGAGAAAC+GGG | - | chr7_2:72971529-72971548 | Msa1074900:intron | 45.0% | |
!! | GATGATGTGAGTGGTGTTGT+TGG | - | chr7_2:72971581-72971600 | Msa1074900:CDS | 45.0% |
AGCCTTGGTCTCTCAATCTA+GGG | + | chr7_2:72971806-72971825 | None:intergenic | 45.0% | |
GAAATTGAGAGGAAGAGCCT+TGG | + | chr7_2:72971821-72971840 | None:intergenic | 45.0% | |
TCTGTTAATCAGGATCTGGC+AGG | - | chr7_2:72972158-72972177 | Msa1074900:intron | 45.0% | |
ACCACAATGCATCAGGAAAG+GGG | + | chr7_2:72972252-72972271 | None:intergenic | 45.0% | |
ATATCAGCTTCAGTGACCTG+TGG | + | chr7_2:72972309-72972328 | None:intergenic | 45.0% | |
GGTCACTGAAGCTGATATTG+AGG | - | chr7_2:72972311-72972330 | Msa1074900:intron | 45.0% | |
! | GGAGTTTGAAGCAAACTACC+GGG | - | chr7_2:72972332-72972351 | Msa1074900:intron | 45.0% |
! | GAGTTTGAAGCAAACTACCG+GGG | - | chr7_2:72972333-72972352 | Msa1074900:intron | 45.0% |
! | TTTTCTCTGAGTCAGAACCC+CGG | + | chr7_2:72972353-72972372 | None:intergenic | 45.0% |
!! | ACTTGACTCACACCGATTCA+AGG | - | chr7_2:72972540-72972559 | Msa1074900:intron | 45.0% |
!! | TTCCTTAGCCCATTTCTGGT+AGG | + | chr7_2:72973196-72973215 | None:intergenic | 45.0% |
TAAAGGACTTGTGGGTGGTT+TGG | + | chr7_2:72973229-72973248 | None:intergenic | 45.0% | |
! | CTCTTTAAAGGACTTGTGGG+TGG | + | chr7_2:72973234-72973253 | None:intergenic | 45.0% |
! | CACCCACAAGTCCTTTAAAG+AGG | - | chr7_2:72973232-72973251 | Msa1074900:intron | 45.0% |
TATCACAACGCCGAAATGAG+AGG | - | chr7_2:72973381-72973400 | Msa1074900:intron | 45.0% | |
AATTCCTCTTCAGAGGGTTC+TGG | + | chr7_2:72973467-72973486 | None:intergenic | 45.0% | |
TCATTTCTGCGGATCTACTC+TGG | - | chr7_2:72973658-72973677 | Msa1074900:five_prime_UTR | 45.0% | |
!!! | TTTTTTTTTTTTTTTTATGT+TGG | - | chr7_2:72970688-72970707 | Msa1074900:CDS | 5.0% |
GCCTTGGTCTCTCAATCTAG+GGG | + | chr7_2:72971805-72971824 | None:intergenic | 50.0% | |
GAGCCTTGGTCTCTCAATCT+AGG | + | chr7_2:72971807-72971826 | None:intergenic | 50.0% | |
CAATGCATCAGGAAAGGGGA+TGG | + | chr7_2:72972248-72972267 | None:intergenic | 50.0% | |
TCCCCTTTCCTGATGCATTG+TGG | - | chr7_2:72972248-72972267 | Msa1074900:intron | 50.0% | |
CTTGATGAGGCTATAGCTGC+TGG | - | chr7_2:72972568-72972587 | Msa1074900:CDS | 50.0% | |
TGAGGCTATAGCTGCTGGTA+AGG | - | chr7_2:72972573-72972592 | Msa1074900:CDS | 50.0% | |
GAGGCTATAGCTGCTGGTAA+GGG | - | chr7_2:72972574-72972593 | Msa1074900:CDS | 50.0% | |
!! | AGCCTACCAGAAATGGGCTA+AGG | - | chr7_2:72973191-72973210 | Msa1074900:intron | 50.0% |
CAACGCCGAAATGAGAGGAA+AGG | - | chr7_2:72973386-72973405 | Msa1074900:intron | 50.0% | |
! | TATGCCAGAACCCTCTGAAG+AGG | - | chr7_2:72973460-72973479 | Msa1074900:intron | 50.0% |
CTGTGTGAAAAATGGCGCCG+AGG | - | chr7_2:72970503-72970522 | Msa1074900:three_prime_UTR | 55.0% | |
! | TGGCGCCGAGGAAGAAAACT+AGG | - | chr7_2:72970515-72970534 | Msa1074900:three_prime_UTR | 55.0% |
! | GGCGCCGAGGAAGAAAACTA+GGG | - | chr7_2:72970516-72970535 | Msa1074900:three_prime_UTR | 55.0% |
CGGGCTCTCTATGATCAGAC+TGG | - | chr7_2:72971548-72971567 | Msa1074900:intron | 55.0% | |
GCCCCTAGATTGAGAGACCA+AGG | - | chr7_2:72971801-72971820 | Msa1074900:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7_2 | gene | 72970345 | 72973805 | 72970345 | ID=Msa1074900;Name=Msa1074900 |
chr7_2 | mRNA | 72970345 | 72973805 | 72970345 | ID=Msa1074900-mRNA-1;Parent=Msa1074900;Name=Msa1074900-mRNA-1;_AED=0.10;_eAED=0.10;_QI=169|1|1|1|1|1|8|249|275 |
chr7_2 | exon | 72970345 | 72970807 | 72970345 | ID=Msa1074900-mRNA-1:exon:16887;Parent=Msa1074900-mRNA-1 |
chr7_2 | exon | 72970888 | 72970978 | 72970888 | ID=Msa1074900-mRNA-1:exon:16886;Parent=Msa1074900-mRNA-1 |
chr7_2 | exon | 72971561 | 72971643 | 72971561 | ID=Msa1074900-mRNA-1:exon:16885;Parent=Msa1074900-mRNA-1 |
chr7_2 | exon | 72971732 | 72971838 | 72971732 | ID=Msa1074900-mRNA-1:exon:16884;Parent=Msa1074900-mRNA-1 |
chr7_2 | exon | 72971924 | 72971980 | 72971924 | ID=Msa1074900-mRNA-1:exon:16883;Parent=Msa1074900-mRNA-1 |
chr7_2 | exon | 72972564 | 72972665 | 72972564 | ID=Msa1074900-mRNA-1:exon:16882;Parent=Msa1074900-mRNA-1 |
chr7_2 | exon | 72972771 | 72972869 | 72972771 | ID=Msa1074900-mRNA-1:exon:16881;Parent=Msa1074900-mRNA-1 |
chr7_2 | exon | 72973562 | 72973805 | 72973562 | ID=Msa1074900-mRNA-1:exon:16880;Parent=Msa1074900-mRNA-1 |
chr7_2 | five_prime_UTR | 72973637 | 72973805 | 72973637 | ID=Msa1074900-mRNA-1:five_prime_utr;Parent=Msa1074900-mRNA-1 |
chr7_2 | CDS | 72973562 | 72973636 | 72973562 | ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1 |
chr7_2 | CDS | 72972771 | 72972869 | 72972771 | ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1 |
chr7_2 | CDS | 72972564 | 72972665 | 72972564 | ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1 |
chr7_2 | CDS | 72971924 | 72971980 | 72971924 | ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1 |
chr7_2 | CDS | 72971732 | 72971838 | 72971732 | ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1 |
chr7_2 | CDS | 72971561 | 72971643 | 72971561 | ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1 |
chr7_2 | CDS | 72970888 | 72970978 | 72970888 | ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1 |
chr7_2 | CDS | 72970594 | 72970807 | 72970594 | ID=Msa1074900-mRNA-1:cds;Parent=Msa1074900-mRNA-1 |
chr7_2 | three_prime_UTR | 72970345 | 72970593 | 72970345 | ID=Msa1074900-mRNA-1:three_prime_utr;Parent=Msa1074900-mRNA-1 |
Gene Sequence |
Protein sequence |