AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1169660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169660 MtrunA17_Chr7g0263601 98.830 171 0 1 1 169 1 171 2.94e-125 349
Msa1169660 MtrunA17_Chr1g0185911 71.429 168 34 6 12 169 11 174 1.13e-76 226
Msa1169660 MtrunA17_Chr2g0290491 70.400 125 28 1 1 125 1 116 2.90e-59 182
Msa1169660 MtrunA17_Chr3g0102351 72.308 130 27 3 9 137 13 134 3.80e-59 182
Msa1169660 MtrunA17_Chr5g0446491 72.951 122 27 2 10 129 9 126 4.87e-58 179
Msa1169660 MtrunA17_Chr8g0382931 78.095 105 23 0 11 115 13 117 2.35e-56 176
Msa1169660 MtrunA17_Chr8g0384451 79.121 91 19 0 25 115 39 129 8.36e-53 167
Msa1169660 MtrunA17_Chr4g0076321 70.588 102 30 0 14 115 7 108 9.25e-49 154
Msa1169660 MtrunA17_Chr1g0195851 69.792 96 29 0 24 119 34 129 2.02e-48 155
Msa1169660 MtrunA17_Chr4g0076381 51.773 141 66 1 24 162 56 196 2.78e-47 154
Msa1169660 MtrunA17_Chr2g0296321 55.372 121 49 1 24 144 64 179 6.12e-47 153
Msa1169660 MtrunA17_Chr4g0067091 68.478 92 29 0 24 115 20 111 1.19e-45 149
Msa1169660 MtrunA17_Chr1g0165041 64.894 94 33 0 24 117 4 97 1.30e-45 148
Msa1169660 MtrunA17_Chr1g0191981 46.667 120 62 1 26 143 4 123 5.16e-37 124
Msa1169660 MtrunA17_Chr1g0159271 50.000 82 41 0 40 121 1 82 9.21e-25 92.4
Msa1169660 MtrunA17_Chr5g0446601 44.211 95 53 0 26 120 24 118 2.71e-21 85.9
Msa1169660 MtrunA17_Chr1g0158951 44.565 92 38 1 56 134 19 110 7.26e-20 79.7
Msa1169660 MtrunA17_Chr2g0307551 32.110 109 74 0 27 135 12 120 1.05e-18 78.2
Msa1169660 MtrunA17_Chr1g0159291 40.789 76 45 0 31 106 7 82 2.00e-18 75.5
Msa1169660 MtrunA17_Chr4g0062271 32.039 103 70 0 27 129 12 114 2.37e-16 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1169660 AT2G37060.2 75.141 177 28 8 1 167 1 171 1.69e-83 244
Msa1169660 AT2G37060.3 75.141 177 28 8 1 167 1 171 1.69e-83 244
Msa1169660 AT2G37060.1 75.141 177 28 8 1 167 1 171 1.69e-83 244
Msa1169660 AT3G53340.5 76.101 159 31 4 17 169 19 176 1.38e-80 236
Msa1169660 AT3G53340.1 76.101 159 31 4 17 169 19 176 1.38e-80 236
Msa1169660 AT2G38880.7 76.923 130 25 1 1 130 1 125 1.58e-70 209
Msa1169660 AT2G38880.3 75.758 132 25 2 1 130 1 127 1.23e-68 205
Msa1169660 AT2G38880.2 75.758 132 25 2 1 130 1 127 1.64e-68 204
Msa1169660 AT2G38880.1 75.758 132 25 2 1 130 1 127 1.64e-68 204
Msa1169660 AT2G38880.5 75.758 132 25 2 1 130 1 127 1.64e-68 204
Msa1169660 AT3G53340.3 79.339 121 24 1 2 121 4 124 1.99e-65 197
Msa1169660 AT3G53340.2 79.339 121 24 1 2 121 4 124 1.99e-65 197
Msa1169660 AT2G38880.11 64.516 155 25 2 1 130 1 150 1.91e-64 195
Msa1169660 AT2G38880.8 64.516 155 25 2 1 130 1 150 1.91e-64 195
Msa1169660 AT2G38880.4 79.130 115 19 1 1 115 1 110 2.46e-64 193
Msa1169660 AT3G53340.4 81.739 115 20 1 2 115 4 118 3.51e-64 193
Msa1169660 AT2G38880.9 79.130 115 19 1 1 115 1 110 7.86e-64 193
Msa1169660 AT2G38880.10 79.130 115 19 1 1 115 1 110 7.86e-64 193
Msa1169660 AT2G38880.6 79.130 115 19 1 1 115 1 110 7.86e-64 193
Msa1169660 AT4G14540.1 80.952 105 18 1 13 115 6 110 2.16e-59 182
Msa1169660 AT5G47640.1 85.714 91 13 0 25 115 26 116 1.45e-56 176
Msa1169660 AT2G13570.1 79.167 96 18 1 25 120 35 128 5.23e-54 170
Msa1169660 AT2G47810.1 71.429 91 26 0 24 114 49 139 4.83e-47 151
Msa1169660 AT5G47670.2 61.682 107 39 1 24 128 27 133 1.35e-46 151
Msa1169660 AT5G47670.1 61.682 107 39 1 24 128 56 162 2.91e-46 151
Msa1169660 AT5G47670.3 61.682 107 39 1 24 128 56 162 2.91e-46 151
Msa1169660 AT1G21970.1 51.538 130 59 2 1 126 31 160 2.39e-45 149
Msa1169660 AT1G09030.1 50.000 134 56 3 26 148 3 136 6.74e-43 139
Msa1169660 AT5G23090.4 35.644 101 59 2 27 123 12 110 1.08e-17 75.9
Msa1169660 AT5G08190.2 34.653 101 60 2 27 123 12 110 6.35e-17 73.9
Msa1169660 AT5G08190.1 37.500 80 50 0 27 106 12 91 9.81e-17 73.6
Msa1169660 AT5G23090.5 38.462 78 48 0 27 104 12 89 1.04e-16 73.6
Msa1169660 AT5G23090.2 38.462 78 48 0 27 104 12 89 1.04e-16 73.6
Msa1169660 AT5G23090.1 38.462 78 48 0 27 104 12 89 1.04e-16 73.6
Msa1169660 AT5G23090.3 38.710 62 38 0 43 104 15 76 3.66e-12 61.2

Find 83 sgRNAs with CRISPR-Local

Find 373 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGAATATTATGTTTGTATT+TGG 0.114799 7_4:-62697541 None:intergenic
CTTTGGGCGATGGCTACTTT+AGG 0.202896 7_4:+62698070 Msa1169660:CDS
AACGGTTTCCTTAGCATCTT+TGG 0.251977 7_4:-62697871 None:intergenic
TGGCAAAGGCTTAAGAATTT+AGG 0.266180 7_4:+62702027 Msa1169660:three_prime_UTR
TTTGGGCGATGGCTACTTTA+GGG 0.280322 7_4:+62698071 Msa1169660:CDS
CTTTCGTGGCTGCCGCCGCC+AGG 0.317211 7_4:-62697741 None:intergenic
CATTATTGTACACCAAAATA+AGG 0.330292 7_4:-62702088 None:intergenic
GCCAGGACTCGCCGGAGTTT+CGG 0.338910 7_4:-62697724 None:intergenic
AGCTGATTGTAAGCATAAAT+TGG 0.356161 7_4:+62702051 Msa1169660:three_prime_UTR
TATGGTTTGTATATTATGTC+TGG 0.356541 7_4:+62701931 Msa1169660:three_prime_UTR
CAAATACAAACATAATATTC+AGG 0.376675 7_4:+62697542 Msa1169660:five_prime_UTR
ATGTTAGTCTTGATTCCTTC+TGG 0.392700 7_4:+62701999 Msa1169660:three_prime_UTR
TAACGGTGATGATTTGCTTT+GGG 0.394165 7_4:+62698054 Msa1169660:CDS
GCCAGATGTGTCTCCACCCT+TGG 0.406781 7_4:-62698692 None:intergenic
TCCGAAACTCCGGCGAGTCC+TGG 0.416968 7_4:+62697723 Msa1169660:CDS
GAAGTTACATTTGTAAGTGC+TGG 0.429225 7_4:+62701972 Msa1169660:three_prime_UTR
TTAACGGTGATGATTTGCTT+TGG 0.430649 7_4:+62698053 Msa1169660:CDS
GGTGTTTCAGGGTGATACTA+AGG 0.432945 7_4:+62698663 Msa1169660:intron
CTTGATTCCTTCTGGCGGCT+TGG 0.442493 7_4:+62702007 Msa1169660:three_prime_UTR
AGATGCTAAGGAAACCGTTC+AGG 0.443640 7_4:+62697875 Msa1169660:CDS
GAGAAGAGGAAGACGATTAA+CGG 0.446276 7_4:+62698037 Msa1169660:CDS
TCCTTCTGGCGGCTTGGCAA+AGG 0.447786 7_4:+62702013 Msa1169660:three_prime_UTR
GACTGTGTTCGCCGCTTTCG+TGG 0.449949 7_4:-62697755 None:intergenic
GATGGCTACTTTAGGGTTTG+AGG 0.453692 7_4:+62698078 Msa1169660:CDS
AGAAAACGAACGGTGGTGAT+AGG 0.457301 7_4:+62697431 Msa1169660:five_prime_UTR
GCCAAGGGTGGAGACACATC+TGG 0.461100 7_4:+62698691 Msa1169660:CDS
AATTGGCTTATTACCTACTC+TGG 0.462181 7_4:-62701760 None:intergenic
ACGGTCTTGTTCACGGATGT+TGG 0.478749 7_4:-62697784 None:intergenic
TAACCTCTCTGTATCTTGTA+AGG 0.479347 7_4:-62698126 None:intergenic
TGATGATTTGCTTTGGGCGA+TGG 0.479911 7_4:+62698060 Msa1169660:CDS
ACCACTGTGAGAAGATCAAT+TGG 0.483024 7_4:-62701777 None:intergenic
CATCAAGGTTCTTTCTCACA+AGG 0.487515 7_4:+62698869 Msa1169660:CDS
CTGCCGCCGCCAGGACTCGC+CGG 0.499622 7_4:-62697732 None:intergenic
TGTTTCCTACACAAATTCTC+AGG 0.502672 7_4:+62698892 Msa1169660:CDS
TGATCTTCTCACAGTGGTCG+TGG 0.512662 7_4:+62701782 Msa1169660:three_prime_UTR
AAATTGCAGCTTGTTCATCA+AGG 0.514442 7_4:+62698854 Msa1169660:intron
TGATACTAAGGGCTCTGCCA+AGG 0.527179 7_4:+62698675 Msa1169660:CDS
ATCTCAGGGTCAACATATGA+TGG 0.528911 7_4:+62701723 Msa1169660:intron
TCAACAAGGTTCTAATCCTC+AGG 0.530968 7_4:+62698726 Msa1169660:CDS
GAAGGAAACGGTCTTGTTCA+CGG 0.533282 7_4:-62697791 None:intergenic
GGCGGCGGCAGCCACGAAAG+CGG 0.544156 7_4:+62697744 Msa1169660:CDS
CGAGCGTAGATCGGTAAGAA+TGG 0.544348 7_4:-62697516 None:intergenic
TTTATTATTGCAACAACACT+CGG 0.545283 7_4:-62697408 None:intergenic
GATACTAAGGGCTCTGCCAA+GGG 0.547138 7_4:+62698676 Msa1169660:CDS
TATTTGGCGCGAGCGTAGAT+CGG 0.548186 7_4:-62697525 None:intergenic
CGACGATATGTCCGAAACTC+CGG 0.548200 7_4:+62697713 Msa1169660:exon
CTTGTAAGGTAAATCTTAAG+AGG 0.551310 7_4:-62698112 None:intergenic
AATCGGACGCTGGAGAAGAA+AGG 0.555897 7_4:-62697487 None:intergenic
GTGTTTCAGGGTGATACTAA+GGG 0.557727 7_4:+62698664 Msa1169660:intron
GGTAAGAATGGAGAGAGAAT+CGG 0.562694 7_4:-62697504 None:intergenic
ACTCCGGCGAGTCCTGGCGG+CGG 0.562769 7_4:+62697729 Msa1169660:CDS
GCCTTTGCCAAGCCGCCAGA+AGG 0.562934 7_4:-62702014 None:intergenic
TGTTAGCGATAGGAAGGAAA+CGG 0.567517 7_4:-62697803 None:intergenic
TAAAATCGCCAAAGATGCTA+AGG 0.569776 7_4:+62697863 Msa1169660:CDS
TGGAGAAGAAAGGAAGGAGG+AGG 0.570212 7_4:-62697477 None:intergenic
GTTAACATTTGCAAGTAATG+TGG 0.573960 7_4:+62702144 Msa1169660:three_prime_UTR
TGTACAATAATGGATGAAGA+TGG 0.589910 7_4:+62702099 Msa1169660:three_prime_UTR
GGACGCTGGAGAAGAAAGGA+AGG 0.591727 7_4:-62697483 None:intergenic
ATAAGTGTCAGAGAGAGAAG+AGG 0.595900 7_4:+62698023 Msa1169660:CDS
GGTGATGAAGCTGATGAACT+CGG 0.601461 7_4:-62697907 None:intergenic
GGCTGATGTTAGCGATAGGA+AGG 0.601546 7_4:-62697809 None:intergenic
ATGGAGAGAGAATCGGACGC+TGG 0.604804 7_4:-62697497 None:intergenic
CTCTCTCTGACACTTATCAG+AGG 0.607674 7_4:-62698017 None:intergenic
AATACATTCAATTATGCCGA+CGG 0.612909 7_4:-62701842 None:intergenic
CAATAATAAAAGAAAACGAA+CGG 0.613602 7_4:+62697421 Msa1169660:five_prime_UTR
CTCGGAGACACATTCCTGAA+CGG 0.614495 7_4:-62697889 None:intergenic
ACTAAGGGCTCTGCCAAGGG+TGG 0.614551 7_4:+62698679 Msa1169660:CDS
AATACTGGCATAAGACACAT+TGG 0.614711 7_4:+62701877 Msa1169660:three_prime_UTR
CATATGATGGTTCCTATGCA+AGG 0.614811 7_4:+62701736 Msa1169660:CDS
CGCTGGAGAAGAAAGGAAGG+AGG 0.615239 7_4:-62697480 None:intergenic
ACCTACTCTGGACCTTGCAT+AGG 0.618826 7_4:-62701748 None:intergenic
ATGCGGCTGATGTTAGCGAT+AGG 0.621968 7_4:-62697813 None:intergenic
TCCTATGCAAGGTCCAGAGT+AGG 0.631930 7_4:+62701747 Msa1169660:CDS
TTAGTCTTGATTCCTTCTGG+CGG 0.638828 7_4:+62702002 Msa1169660:three_prime_UTR
GAAACTCCGGCGAGTCCTGG+CGG 0.650343 7_4:+62697726 Msa1169660:CDS
TGTTACCTGAGAATTTGTGT+AGG 0.662155 7_4:-62698897 None:intergenic
AGAAGGAATCAAGACTAACA+TGG 0.664060 7_4:-62701997 None:intergenic
CGGAGTTTCGGACATATCGT+CGG 0.664649 7_4:-62697712 None:intergenic
AGAGCTTTACTAAATGCCGT+CGG 0.687955 7_4:+62701826 Msa1169660:three_prime_UTR
TGTTCACGGATGTTGGAACG+AGG 0.689840 7_4:-62697777 None:intergenic
GCCAATTGATCTTCTCACAG+TGG 0.709394 7_4:+62701776 Msa1169660:three_prime_UTR
TAATAAAAGAAAACGAACGG+TGG 0.713974 7_4:+62697424 Msa1169660:five_prime_UTR
TTACCTTACAAGATACAGAG+AGG 0.715766 7_4:+62698123 Msa1169660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTGATAATATCATAAAT+TGG - chr7_4:62700662-62700681 None:intergenic 10.0%
!!! TTTTTTTTTTTTTTTGTATG+GGG - chr7_4:62701123-62701142 None:intergenic 10.0%
!!! CTTTTTTTTTTTTTTTTGTA+TGG - chr7_4:62701125-62701144 None:intergenic 10.0%
!!! TAATTGTTTTAATAAAAACT+TGG - chr7_4:62701159-62701178 None:intergenic 10.0%
!!! TTTTATTAAAACAATTATAC+TGG + chr7_4:62701162-62701181 Msa1169660:intron 10.0%
!! TTAATTAATTTCATCATGTT+AGG + chr7_4:62697686-62697705 Msa1169660:intron 15.0%
!! TAATTAATTTCATCATGTTA+GGG + chr7_4:62697687-62697706 Msa1169660:intron 15.0%
!! ATTTGATGTTTAATTGTTTA+GGG + chr7_4:62697994-62698013 Msa1169660:intron 15.0%
!! TAATCATGACAAAAATAAAA+TGG + chr7_4:62699091-62699110 Msa1169660:intron 15.0%
!! AATCATGACAAAAATAAAAT+GGG + chr7_4:62699092-62699111 Msa1169660:intron 15.0%
!!! AAAATGCTTTTTATAGAAAA+GGG - chr7_4:62699142-62699161 None:intergenic 15.0%
!!! AAAAATGCTTTTTATAGAAA+AGG - chr7_4:62699143-62699162 None:intergenic 15.0%
!!! TATAAAAAGCATTTTTTACT+TGG + chr7_4:62699147-62699166 Msa1169660:intron 15.0%
!! ATTCATTTACAAAATGTATT+AGG + chr7_4:62699448-62699467 Msa1169660:intron 15.0%
!! TTCATTTACAAAATGTATTA+GGG + chr7_4:62699449-62699468 Msa1169660:intron 15.0%
!! ACATTTGGAAAATATTATTT+GGG - chr7_4:62699923-62699942 None:intergenic 15.0%
!! AACATTTGGAAAATATTATT+TGG - chr7_4:62699924-62699943 None:intergenic 15.0%
!! TTAAATATATAGGAAACATT+TGG - chr7_4:62699938-62699957 None:intergenic 15.0%
!! AAGCTTAAGATTAAATATAT+AGG - chr7_4:62699948-62699967 None:intergenic 15.0%
!!! TTTGAAAATAATTTGTTACT+TGG + chr7_4:62700822-62700841 Msa1169660:intron 15.0%
!! TATGATATTATATCAGTTTA+AGG + chr7_4:62701626-62701645 Msa1169660:intron 15.0%
!!! ATTTTATGTAATGTTAATAC+TGG + chr7_4:62701862-62701881 Msa1169660:three_prime_UTR 15.0%
!!! ATTTTTTTTCTCTCAAATTA+TGG + chr7_4:62701913-62701932 Msa1169660:three_prime_UTR 15.0%
!! CAATAATAAAAGAAAACGAA+CGG + chr7_4:62697421-62697440 Msa1169660:five_prime_UTR 20.0%
!! CTGAATATTATGTTTGTATT+TGG - chr7_4:62697544-62697563 None:intergenic 20.0%
!! CAAATACAAACATAATATTC+AGG + chr7_4:62697542-62697561 Msa1169660:five_prime_UTR 20.0%
!! AAAGTAAGAAAAAGAAAGTA+AGG - chr7_4:62697956-62697975 None:intergenic 20.0%
!! GATTTGATGTTTAATTGTTT+AGG + chr7_4:62697993-62698012 Msa1169660:intron 20.0%
!!! TTTTACTTTATAAGCTTTTC+TGG + chr7_4:62698188-62698207 Msa1169660:intron 20.0%
!!! AATTGACATTAATTTTCACT+GGG - chr7_4:62698217-62698236 None:intergenic 20.0%
!! AGTGAAAATTAATGTCAATT+GGG + chr7_4:62698217-62698236 Msa1169660:intron 20.0%
!!! TACTTTTCTAATTGTTTCTA+GGG - chr7_4:62698808-62698827 None:intergenic 20.0%
!! AATCATCATATTTATTCGTA+TGG - chr7_4:62699009-62699028 None:intergenic 20.0%
!!! AAATGCTTTTTATAGAAAAG+GGG - chr7_4:62699141-62699160 None:intergenic 20.0%
!! ATTGTTTATAGAATTCATGT+AGG - chr7_4:62699376-62699395 None:intergenic 20.0%
!! AAATGTATTAGGGTTAAATT+AGG + chr7_4:62699459-62699478 Msa1169660:intron 20.0%
!!! TGTGAACTTTTATTTTGAAA+TGG - chr7_4:62699590-62699609 None:intergenic 20.0%
!! TAAGTTATTAATCATATGTC+CGG - chr7_4:62700052-62700071 None:intergenic 20.0%
!! TAACTTATAAGTGATTGAAT+AGG + chr7_4:62700065-62700084 Msa1169660:intron 20.0%
!! AGAAATTAGAATATGACTTT+GGG - chr7_4:62700632-62700651 None:intergenic 20.0%
!! TAGAAATTAGAATATGACTT+TGG - chr7_4:62700633-62700652 None:intergenic 20.0%
!!! TCATATTCTAATTTCTAGAA+GGG + chr7_4:62700636-62700655 Msa1169660:intron 20.0%
!!! AAAAAAGTATATTTTGGGAT+GGG - chr7_4:62701375-62701394 None:intergenic 20.0%
!!! CTACCAAAAAAGTATATTTT+GGG - chr7_4:62701380-62701399 None:intergenic 20.0%
!! TATAATATCATAAACAGAAG+AGG - chr7_4:62701618-62701637 None:intergenic 20.0%
!! AATTTGAGAGAAAAAAAATC+AGG - chr7_4:62701912-62701931 None:intergenic 20.0%
!!! TATTTTTTCGATCCTTATTT+TGG + chr7_4:62702076-62702095 Msa1169660:three_prime_UTR 20.0%
! TTTATTATTGCAACAACACT+CGG - chr7_4:62697411-62697430 None:intergenic 25.0%
!! AATCCTAGTTGTTATAGTTT+TGG - chr7_4:62697592-62697611 None:intergenic 25.0%
!! ATTGACATTAATTTTCACTG+GGG - chr7_4:62698216-62698235 None:intergenic 25.0%
!! CAATTGACATTAATTTTCAC+TGG - chr7_4:62698218-62698237 None:intergenic 25.0%
! CAGTGAAAATTAATGTCAAT+TGG + chr7_4:62698216-62698235 Msa1169660:intron 25.0%
!!! CTATTGTACTTTTTAACTGA+TGG + chr7_4:62698299-62698318 Msa1169660:intron 25.0%
!!! TTTTTTTCATTGCTTTGTCA+TGG + chr7_4:62698326-62698345 Msa1169660:intron 25.0%
!!! TTTTTTCATTGCTTTGTCAT+GGG + chr7_4:62698327-62698346 Msa1169660:intron 25.0%
!! GTTTTACACTTTCAATGTTT+TGG + chr7_4:62698591-62698610 Msa1169660:intron 25.0%
!!! AATAGGTTTCTGTGATTTTT+TGG + chr7_4:62698614-62698633 Msa1169660:intron 25.0%
!!! ACGAATCTATGTTTTATTTG+TGG + chr7_4:62698642-62698661 Msa1169660:intron 25.0%
!!! ACTTTTCTAATTGTTTCTAG+GGG - chr7_4:62698807-62698826 None:intergenic 25.0%
!!! CTACTTTTCTAATTGTTTCT+AGG - chr7_4:62698809-62698828 None:intergenic 25.0%
! TTATAGAAAAGGGGTTAAAA+TGG - chr7_4:62699132-62699151 None:intergenic 25.0%
! TTTAATCTACCCATAGAAAA+AGG + chr7_4:62699225-62699244 Msa1169660:intron 25.0%
! AAAATGTTAATGCTGCTATA+TGG + chr7_4:62699397-62699416 Msa1169660:intron 25.0%
!!! AAACACCTTTTTTTTCCATT+GGG - chr7_4:62699614-62699633 None:intergenic 25.0%
!!! AAAACACCTTTTTTTTCCAT+TGG - chr7_4:62699615-62699634 None:intergenic 25.0%
!!! TGTTTTTAGCTAATCAACAT+GGG + chr7_4:62699629-62699648 Msa1169660:intron 25.0%
! TTGTGTTAGAATATGTATGT+TGG + chr7_4:62699722-62699741 Msa1169660:intron 25.0%
!! TTTTACGGTGAAAAAAATGT+TGG - chr7_4:62699766-62699785 None:intergenic 25.0%
! TTCACCGTAAAAATAAAGTT+TGG + chr7_4:62699774-62699793 Msa1169660:intron 25.0%
! TCACCGTAAAAATAAAGTTT+GGG + chr7_4:62699775-62699794 Msa1169660:intron 25.0%
! CCAATATAGCTTATGAAAAA+CGG - chr7_4:62699824-62699843 None:intergenic 25.0%
!! AAAATCCAATGATAATGTGT+TGG - chr7_4:62699996-62700015 None:intergenic 25.0%
!!! GTGTTTTGGTAAATTAGAAA+CGG - chr7_4:62700147-62700166 None:intergenic 25.0%
!!! CTCCTATTTATGTTTTTTTG+AGG - chr7_4:62700265-62700284 None:intergenic 25.0%
!! TTTCTATGAGATGATTTTCA+TGG - chr7_4:62700370-62700389 None:intergenic 25.0%
!! GTCATATTCTAATTTCTAGA+AGG + chr7_4:62700635-62700654 Msa1169660:intron 25.0%
!! TTATAAGCACTGTGATATAA+AGG + chr7_4:62700679-62700698 Msa1169660:intron 25.0%
!!! AAAGACTAGTTTTTTAGGAT+AGG - chr7_4:62700976-62700995 None:intergenic 25.0%
!!! ATCCTAAAAAACTAGTCTTT+TGG + chr7_4:62700976-62700995 Msa1169660:intron 25.0%
!!! TCCTAAAAAACTAGTCTTTT+GGG + chr7_4:62700977-62700996 Msa1169660:intron 25.0%
!!! CAAAAAAGTATATTTTGGGA+TGG - chr7_4:62701376-62701395 None:intergenic 25.0%
!!! CATCCCAAAATATACTTTTT+TGG + chr7_4:62701374-62701393 Msa1169660:intron 25.0%
!!! CCTACCAAAAAAGTATATTT+TGG - chr7_4:62701381-62701400 None:intergenic 25.0%
!!! CCAAAATATACTTTTTTGGT+AGG + chr7_4:62701378-62701397 Msa1169660:intron 25.0%
! TTAAGGAACTTATGTCATAT+CGG + chr7_4:62701643-62701662 Msa1169660:intron 25.0%
!!! TTTTTTTATTCTTCGATCTC+AGG + chr7_4:62701708-62701727 Msa1169660:intron 25.0%
!!! TTTTTTATTCTTCGATCTCA+GGG + chr7_4:62701709-62701728 Msa1169660:intron 25.0%
!! TATGGTTTGTATATTATGTC+TGG + chr7_4:62701931-62701950 Msa1169660:three_prime_UTR 25.0%
! CATTATTGTACACCAAAATA+AGG - chr7_4:62702091-62702110 None:intergenic 25.0%
!!! CTTATTTTGGTGTACAATAA+TGG + chr7_4:62702089-62702108 Msa1169660:three_prime_UTR 25.0%
TAATAAAAGAAAACGAACGG+TGG + chr7_4:62697424-62697443 Msa1169660:five_prime_UTR 30.0%
!!! CTAGTTGTTATAGTTTTGGA+GGG - chr7_4:62697588-62697607 None:intergenic 30.0%
CTTGTAAGGTAAATCTTAAG+AGG - chr7_4:62698115-62698134 None:intergenic 30.0%
! TTGACATTAATTTTCACTGG+GGG - chr7_4:62698215-62698234 None:intergenic 30.0%
AAGTTCAAGCAATGAAAGAA+AGG - chr7_4:62698390-62698409 None:intergenic 30.0%
!!! GATTAGTTTTTTTGCACTGA+TGG + chr7_4:62698443-62698462 Msa1169660:intron 30.0%
GATATTTGTGGAGATACTTT+AGG - chr7_4:62698534-62698553 None:intergenic 30.0%
TATCTCCACAAATATCAATG+TGG + chr7_4:62698538-62698557 Msa1169660:intron 30.0%
!!! CACTTTCAATGTTTTGGAAT+AGG + chr7_4:62698597-62698616 Msa1169660:intron 30.0%
!!! TGTTTTATTTGTGGTGTTTC+AGG + chr7_4:62698651-62698670 Msa1169660:intron 30.0%
!!! GTTTTATTTGTGGTGTTTCA+GGG + chr7_4:62698652-62698671 Msa1169660:intron 30.0%
! ATTATGCGTGATTTTATAGC+CGG + chr7_4:62698773-62698792 Msa1169660:intron 30.0%
TGTCATGATTAATATGTGCT+GGG - chr7_4:62699082-62699101 None:intergenic 30.0%
TTGTCATGATTAATATGTGC+TGG - chr7_4:62699083-62699102 None:intergenic 30.0%
! TAGGGTTAAATTAGGTTTTG+TGG + chr7_4:62699467-62699486 Msa1169660:intron 30.0%
TTTGTGGATCTTGTAATTGT+TGG + chr7_4:62699483-62699502 Msa1169660:intron 30.0%
TTAGTATTATGTTGAGAGTG+GGG - chr7_4:62699561-62699580 None:intergenic 30.0%
GTTAGTATTATGTTGAGAGT+GGG - chr7_4:62699562-62699581 None:intergenic 30.0%
TGTTAGTATTATGTTGAGAG+TGG - chr7_4:62699563-62699582 None:intergenic 30.0%
!!! AACACCTTTTTTTTCCATTG+GGG - chr7_4:62699613-62699632 None:intergenic 30.0%
!!! GTGTTTTTAGCTAATCAACA+TGG + chr7_4:62699628-62699647 Msa1169660:intron 30.0%
CACCGTAAAAATAAAGTTTG+GGG + chr7_4:62699776-62699795 Msa1169660:intron 30.0%
!!! CACCCCAAACTTTATTTTTA+CGG - chr7_4:62699781-62699800 None:intergenic 30.0%
! AAAATAAAGTTTGGGGTGAA+TGG + chr7_4:62699783-62699802 Msa1169660:intron 30.0%
! AAATAAAGTTTGGGGTGAAT+GGG + chr7_4:62699784-62699803 Msa1169660:intron 30.0%
!! CCGTTTTTCATAAGCTATAT+TGG + chr7_4:62699821-62699840 Msa1169660:intron 30.0%
TTAATCTTAAGCTTGTCTGT+TGG + chr7_4:62699954-62699973 Msa1169660:intron 30.0%
TGGTAAATTAGAAACGGATA+CGG - chr7_4:62700141-62700160 None:intergenic 30.0%
GGCCTCAAAAAAACATAAAT+AGG + chr7_4:62700260-62700279 Msa1169660:intron 30.0%
TCAATTGTTGAAGCAGATTT+GGG - chr7_4:62700509-62700528 None:intergenic 30.0%
TTCAATTGTTGAAGCAGATT+TGG - chr7_4:62700510-62700529 None:intergenic 30.0%
! TCAGTTTAAAATTGGTGTAC+TGG - chr7_4:62700754-62700773 None:intergenic 30.0%
!!! ACCCAAAAGACTAGTTTTTT+AGG - chr7_4:62700981-62701000 None:intergenic 30.0%
!!! TAAAAAACTAGTCTTTTGGG+TGG + chr7_4:62700980-62700999 Msa1169660:intron 30.0%
AAACAATTATACTGGTCCAA+CGG + chr7_4:62701170-62701189 Msa1169660:intron 30.0%
AACATAAAGAGACGTGTTAA+AGG - chr7_4:62701408-62701427 None:intergenic 30.0%
TCAGACACTAAACTAAATAG+AGG + chr7_4:62701454-62701473 Msa1169660:intron 30.0%
GATATTGAGCAATCATGATA+TGG + chr7_4:62701584-62701603 Msa1169660:intron 30.0%
AATACATTCAATTATGCCGA+CGG - chr7_4:62701845-62701864 None:intergenic 30.0%
AGCTGATTGTAAGCATAAAT+TGG + chr7_4:62702051-62702070 Msa1169660:three_prime_UTR 30.0%
!! TGTACAATAATGGATGAAGA+TGG + chr7_4:62702099-62702118 Msa1169660:three_prime_UTR 30.0%
GTTAACATTTGCAAGTAATG+TGG + chr7_4:62702144-62702163 Msa1169660:three_prime_UTR 30.0%
!!! CCTAGTTGTTATAGTTTTGG+AGG - chr7_4:62697589-62697608 None:intergenic 35.0%
CCTCCAAAACTATAACAACT+AGG + chr7_4:62697586-62697605 Msa1169660:intron 35.0%
!!! GAAGAGCTTTTTTCATGATG+CGG - chr7_4:62697833-62697852 None:intergenic 35.0%
AAAAAAGCTCTTCCTGCTAA+TGG + chr7_4:62697840-62697859 Msa1169660:CDS 35.0%
TAAAATCGCCAAAGATGCTA+AGG + chr7_4:62697863-62697882 Msa1169660:CDS 35.0%
!! TTAACGGTGATGATTTGCTT+TGG + chr7_4:62698053-62698072 Msa1169660:CDS 35.0%
!! TAACGGTGATGATTTGCTTT+GGG + chr7_4:62698054-62698073 Msa1169660:CDS 35.0%
TTACCTTACAAGATACAGAG+AGG + chr7_4:62698123-62698142 Msa1169660:CDS 35.0%
TAACCTCTCTGTATCTTGTA+AGG - chr7_4:62698129-62698148 None:intergenic 35.0%
TTACAAGATACAGAGAGGTT+AGG + chr7_4:62698128-62698147 Msa1169660:intron 35.0%
AATTCCGTATAGATTGTCAG+AGG - chr7_4:62698244-62698263 None:intergenic 35.0%
CTTCACTGTACCATGTTTAT+AGG + chr7_4:62698502-62698521 Msa1169660:intron 35.0%
! TAGGAACTAGCCTATAAACA+TGG - chr7_4:62698515-62698534 None:intergenic 35.0%
TCACACCACATTGATATTTG+TGG - chr7_4:62698546-62698565 None:intergenic 35.0%
TCAATGTGGTGTGATTTGAT+TGG + chr7_4:62698552-62698571 Msa1169660:intron 35.0%
CAATGTGGTGTGATTTGATT+GGG + chr7_4:62698553-62698572 Msa1169660:intron 35.0%
GGCAAAAAAGATGTTCAACA+AGG + chr7_4:62698712-62698731 Msa1169660:CDS 35.0%
ATGTATGTGTTTACTACCTG+AGG - chr7_4:62698745-62698764 None:intergenic 35.0%
! AAATTGCAGCTTGTTCATCA+AGG + chr7_4:62698854-62698873 Msa1169660:intron 35.0%
TGTTTCCTACACAAATTCTC+AGG + chr7_4:62698892-62698911 Msa1169660:CDS 35.0%
TGTTACCTGAGAATTTGTGT+AGG - chr7_4:62698900-62698919 None:intergenic 35.0%
!! CACTACTCTCTAAAATGCTA+AGG + chr7_4:62698918-62698937 Msa1169660:intron 35.0%
GTCATGATTAATATGTGCTG+GGG - chr7_4:62699081-62699100 None:intergenic 35.0%
! TGTTTGCTCTCATACTGTTT+TGG + chr7_4:62699194-62699213 Msa1169660:intron 35.0%
! TACCATGGACCTTTTTCTAT+GGG - chr7_4:62699237-62699256 None:intergenic 35.0%
CAGACACTTAAATTGTACCA+TGG - chr7_4:62699252-62699271 None:intergenic 35.0%
! ATCAATGAATTCTCCCCTTT+TGG + chr7_4:62699279-62699298 Msa1169660:intron 35.0%
ACCCATTAAAGTAAGTTGTG+TGG + chr7_4:62699322-62699341 Msa1169660:intron 35.0%
CCCACACAACTTACTTTAAT+GGG - chr7_4:62699326-62699345 None:intergenic 35.0%
CCCATTAAAGTAAGTTGTGT+GGG + chr7_4:62699323-62699342 Msa1169660:intron 35.0%
ATGAATGTTTAGAAAGCCCA+AGG - chr7_4:62699434-62699453 None:intergenic 35.0%
AATAAAAGTTCACACCCCAA+TGG + chr7_4:62699596-62699615 Msa1169660:intron 35.0%
AATCAACATGGGTATGTGAA+TGG + chr7_4:62699640-62699659 Msa1169660:intron 35.0%
ATCAACATGGGTATGTGAAT+GGG + chr7_4:62699641-62699660 Msa1169660:intron 35.0%
ATCACAATATACTCAGAAGC+TGG - chr7_4:62699874-62699893 None:intergenic 35.0%
GGATACCAACACATTATCAT+TGG + chr7_4:62699988-62700007 Msa1169660:intron 35.0%
! TGGATTTTGCTAATTTCCCT+TGG + chr7_4:62700008-62700027 Msa1169660:intron 35.0%
ATTTCCCTTGGCCTATATTT+CGG + chr7_4:62700020-62700039 Msa1169660:intron 35.0%
AATTCTCCCCATTACTATGA+CGG + chr7_4:62700234-62700253 Msa1169660:intron 35.0%
!! AGGTTGTTGAGTAGTTTGTT+GGG - chr7_4:62700402-62700421 None:intergenic 35.0%
CAATTGTTGAAGCAGATTTG+GGG - chr7_4:62700508-62700527 None:intergenic 35.0%
! ATGGCACGTCAGTTTAAAAT+TGG - chr7_4:62700762-62700781 None:intergenic 35.0%
! ATTTGGCTTCTAGACTACAA+TGG - chr7_4:62700781-62700800 None:intergenic 35.0%
ATCACCACTTTCACATTTGA+AGG - chr7_4:62700848-62700867 None:intergenic 35.0%
GTTTATGACTCAAGCTCATA+AGG + chr7_4:62700946-62700965 Msa1169660:intron 35.0%
ATTGCATACGCTTCAAAAGT+TGG + chr7_4:62701050-62701069 Msa1169660:intron 35.0%
CTTGCGACACAATCTAAAAA+TGG + chr7_4:62701086-62701105 Msa1169660:intron 35.0%
!! ATCATGGATACTGACTTTAG+AGG - chr7_4:62701209-62701228 None:intergenic 35.0%
! TCTAAAGTCAGTATCCATGA+TGG + chr7_4:62701208-62701227 Msa1169660:intron 35.0%
ACAAGGAAGTAAACTAGGAA+AGG - chr7_4:62701279-62701298 None:intergenic 35.0%
TTCCTAGTTTACTTCCTTGT+AGG + chr7_4:62701279-62701298 Msa1169660:intron 35.0%
AACCTACAAGGAAGTAAACT+AGG - chr7_4:62701284-62701303 None:intergenic 35.0%
ACACGTCTCTTTATGTTAAG+AGG + chr7_4:62701411-62701430 Msa1169660:intron 35.0%
!!! AATAGAGGCATTTTTTCCGT+TGG + chr7_4:62701469-62701488 Msa1169660:intron 35.0%
!!! ATAGAGGCATTTTTTCCGTT+GGG + chr7_4:62701470-62701489 Msa1169660:intron 35.0%
AGTCTAAACACATGACACTA+CGG - chr7_4:62701503-62701522 None:intergenic 35.0%
!! TTTAGACTAGTCTCTCCTTT+AGG + chr7_4:62701515-62701534 Msa1169660:intron 35.0%
! AATTGGCTTATTACCTACTC+TGG - chr7_4:62701763-62701782 None:intergenic 35.0%
AATACTGGCATAAGACACAT+TGG + chr7_4:62701877-62701896 Msa1169660:three_prime_UTR 35.0%
GAAGTTACATTTGTAAGTGC+TGG + chr7_4:62701972-62701991 Msa1169660:three_prime_UTR 35.0%
AGAAGGAATCAAGACTAACA+TGG - chr7_4:62702000-62702019 None:intergenic 35.0%
!! ATGTTAGTCTTGATTCCTTC+TGG + chr7_4:62701999-62702018 Msa1169660:three_prime_UTR 35.0%
TGGCAAAGGCTTAAGAATTT+AGG + chr7_4:62702027-62702046 Msa1169660:three_prime_UTR 35.0%
GGTAAGAATGGAGAGAGAAT+CGG - chr7_4:62697507-62697526 None:intergenic 40.0%
TGTTAGCGATAGGAAGGAAA+CGG - chr7_4:62697806-62697825 None:intergenic 40.0%
! TTGGCGATTTTACCATTAGC+AGG - chr7_4:62697855-62697874 None:intergenic 40.0%
AACGGTTTCCTTAGCATCTT+TGG - chr7_4:62697874-62697893 None:intergenic 40.0%
GATTTGAAAATCGTACTCGC+TGG - chr7_4:62697931-62697950 None:intergenic 40.0%
ATAAGTGTCAGAGAGAGAAG+AGG + chr7_4:62698023-62698042 Msa1169660:CDS 40.0%
GAGAAGAGGAAGACGATTAA+CGG + chr7_4:62698037-62698056 Msa1169660:CDS 40.0%
TCGATTGGAAATGTTGCAGA+TGG + chr7_4:62698350-62698369 Msa1169660:intron 40.0%
ATTGGAAATGTTGCAGATGG+AGG + chr7_4:62698353-62698372 Msa1169660:intron 40.0%
GTGTTTCAGGGTGATACTAA+GGG + chr7_4:62698664-62698683 Msa1169660:intron 40.0%
! TCAACAAGGTTCTAATCCTC+AGG + chr7_4:62698726-62698745 Msa1169660:CDS 40.0%
CATCAAGGTTCTTTCTCACA+AGG + chr7_4:62698869-62698888 Msa1169660:CDS 40.0%
TACCCATAGAAAAAGGTCCA+TGG + chr7_4:62699232-62699251 Msa1169660:intron 40.0%
! GTACCATGGACCTTTTTCTA+TGG - chr7_4:62699238-62699257 None:intergenic 40.0%
! ATGAATTCTCCCCTTTTGGT+TGG + chr7_4:62699283-62699302 Msa1169660:intron 40.0%
ATGTGTGCTACCAACCAAAA+GGG - chr7_4:62699296-62699315 None:intergenic 40.0%
GCCCACACAACTTACTTTAA+TGG - chr7_4:62699327-62699346 None:intergenic 40.0%
TGGATCTTGTAATTGTTGGC+TGG + chr7_4:62699487-62699506 Msa1169660:intron 40.0%
! GGATCTTGTAATTGTTGGCT+GGG + chr7_4:62699488-62699507 Msa1169660:intron 40.0%
! GATCTTGTAATTGTTGGCTG+GGG + chr7_4:62699489-62699508 Msa1169660:intron 40.0%
CACACCCCAATGGAAAAAAA+AGG + chr7_4:62699606-62699625 Msa1169660:intron 40.0%
TCAACATGGGTATGTGAATG+GGG + chr7_4:62699642-62699661 Msa1169660:intron 40.0%
TGTCTGTTGGAATTCTGACT+TGG + chr7_4:62699967-62699986 Msa1169660:intron 40.0%
TGATCCGAAATATAGGCCAA+GGG - chr7_4:62700027-62700046 None:intergenic 40.0%
TTACCAAAACACTTCAGCAG+CGG + chr7_4:62700155-62700174 Msa1169660:intron 40.0%
!!! AGAATTGAAGCGCTGTTTTC+AGG - chr7_4:62700220-62700239 None:intergenic 40.0%
ATTCTCCCCATTACTATGAC+GGG + chr7_4:62700235-62700254 Msa1169660:intron 40.0%
!! GGTTGTTGAGTAGTTTGTTG+GGG - chr7_4:62700401-62700420 None:intergenic 40.0%
! GAGGTTGTTGAGTAGTTTGT+TGG - chr7_4:62700403-62700422 None:intergenic 40.0%
GGTATGGTCAATAATGGTTG+AGG - chr7_4:62700422-62700441 None:intergenic 40.0%
AATGGCGGTATGGTCAATAA+TGG - chr7_4:62700428-62700447 None:intergenic 40.0%
AGGAATTTGAGCCTAGTTGT+GGG - chr7_4:62700547-62700566 None:intergenic 40.0%
TCATACAGAAGTCTAGCAGA+GGG - chr7_4:62700591-62700610 None:intergenic 40.0%
! AGAAGCCAAATTTTCAGTGC+TGG + chr7_4:62700790-62700809 Msa1169660:intron 40.0%
! CTGTTCCAGCACTGAAAATT+TGG - chr7_4:62700798-62700817 None:intergenic 40.0%
!! AATTTTCAGTGCTGGAACAG+TGG + chr7_4:62700798-62700817 Msa1169660:intron 40.0%
! TTGGCCTTCAAATGTGAAAG+TGG + chr7_4:62700841-62700860 Msa1169660:intron 40.0%
TATGACTCAAGCTCATAAGG+AGG + chr7_4:62700949-62700968 Msa1169660:intron 40.0%
ATGCAATGTCATGATCCACA+TGG - chr7_4:62701037-62701056 None:intergenic 40.0%
AGAAGTCAGCCAATGAAAAG+GGG - chr7_4:62701309-62701328 None:intergenic 40.0%
GAGAAGTCAGCCAATGAAAA+GGG - chr7_4:62701310-62701329 None:intergenic 40.0%
TGAGAAGTCAGCCAATGAAA+AGG - chr7_4:62701311-62701330 None:intergenic 40.0%
ATCTCAGGGTCAACATATGA+TGG + chr7_4:62701723-62701742 Msa1169660:intron 40.0%
CATATGATGGTTCCTATGCA+AGG + chr7_4:62701736-62701755 Msa1169660:CDS 40.0%
ACCACTGTGAGAAGATCAAT+TGG - chr7_4:62701780-62701799 None:intergenic 40.0%
AGAGCTTTACTAAATGCCGT+CGG + chr7_4:62701826-62701845 Msa1169660:three_prime_UTR 40.0%
!! TTAGTCTTGATTCCTTCTGG+CGG + chr7_4:62702002-62702021 Msa1169660:three_prime_UTR 40.0%
AGAAAACGAACGGTGGTGAT+AGG + chr7_4:62697431-62697450 Msa1169660:five_prime_UTR 45.0%
GAGAGAGAGAGAAAGAGAGA+AGG - chr7_4:62697626-62697645 None:intergenic 45.0%
TCTCTCTCTCTCTCTCTCTA+GGG + chr7_4:62697638-62697657 Msa1169660:intron 45.0%
!! GAAGGAAACGGTCTTGTTCA+CGG - chr7_4:62697794-62697813 None:intergenic 45.0%
AGATGCTAAGGAAACCGTTC+AGG + chr7_4:62697875-62697894 Msa1169660:CDS 45.0%
GGTGATGAAGCTGATGAACT+CGG - chr7_4:62697910-62697929 None:intergenic 45.0%
CTCTCTCTGACACTTATCAG+AGG - chr7_4:62698020-62698039 None:intergenic 45.0%
!! TGATGATTTGCTTTGGGCGA+TGG + chr7_4:62698060-62698079 Msa1169660:CDS 45.0%
! TTTGGGCGATGGCTACTTTA+GGG + chr7_4:62698071-62698090 Msa1169660:CDS 45.0%
!! GATGGCTACTTTAGGGTTTG+AGG + chr7_4:62698078-62698097 Msa1169660:CDS 45.0%
GGGTCCTCTGACAATCTATA+CGG + chr7_4:62698237-62698256 Msa1169660:intron 45.0%
TTGCTTTGTCATGGGTCGAT+TGG + chr7_4:62698335-62698354 Msa1169660:intron 45.0%
GGTGTTTCAGGGTGATACTA+AGG + chr7_4:62698663-62698682 Msa1169660:intron 45.0%
TCACATAAATATTGCCCCCC+TGG + chr7_4:62699043-62699062 Msa1169660:intron 45.0%
TGTGTGCTACCAACCAAAAG+GGG - chr7_4:62699295-62699314 None:intergenic 45.0%
GATGTGTGCTACCAACCAAA+AGG - chr7_4:62699297-62699316 None:intergenic 45.0%
TGTTTAGAAAGCCCAAGGAG+TGG - chr7_4:62699429-62699448 None:intergenic 45.0%
! AAAGTTTGGGGTGAATGGGA+AGG + chr7_4:62699788-62699807 Msa1169660:intron 45.0%
! AAGTTTGGGGTGAATGGGAA+GGG + chr7_4:62699789-62699808 Msa1169660:intron 45.0%
GTGATCCGAAATATAGGCCA+AGG - chr7_4:62700028-62700047 None:intergenic 45.0%
GCCTATATTTCGGATCACAC+CGG + chr7_4:62700030-62700049 Msa1169660:intron 45.0%
TCCGGTGTGATCCGAAATAT+AGG - chr7_4:62700034-62700053 None:intergenic 45.0%
TTCTCCCCATTACTATGACG+GGG + chr7_4:62700236-62700255 Msa1169660:intron 45.0%
AGTCAAGTCCTTGCGATCTA+TGG + chr7_4:62700323-62700342 Msa1169660:intron 45.0%
TTCGTAGACCATAGATCGCA+AGG - chr7_4:62700334-62700353 None:intergenic 45.0%
GAGGAATTTGAGCCTAGTTG+TGG - chr7_4:62700548-62700567 None:intergenic 45.0%
CAGTGCACTGAAGAGATTTG+AGG - chr7_4:62700567-62700586 None:intergenic 45.0%
CTCATACAGAAGTCTAGCAG+AGG - chr7_4:62700592-62700611 None:intergenic 45.0%
CAGAACAATCTGTCACATGC+AGG - chr7_4:62700906-62700925 None:intergenic 45.0%
GAAGACACTGCATGAGCTAT+AGG - chr7_4:62701011-62701030 None:intergenic 45.0%
TGCAGTGTCTTCAATCCATG+TGG + chr7_4:62701019-62701038 Msa1169660:intron 45.0%
TTGTGTCGCAAGTGACACTA+TGG - chr7_4:62701078-62701097 None:intergenic 45.0%
AGGTGACATCTTAAGACCGT+TGG - chr7_4:62701189-62701208 None:intergenic 45.0%
TCCATGATGGCTGTCTAGTT+AGG + chr7_4:62701221-62701240 Msa1169660:intron 45.0%
TCCTAACTAGACAGCCATCA+TGG - chr7_4:62701225-62701244 None:intergenic 45.0%
TGAAAAGGGGACAACCTACA+AGG - chr7_4:62701296-62701315 None:intergenic 45.0%
! GTAGGTTGTCCCCTTTTCAT+TGG + chr7_4:62701297-62701316 Msa1169660:intron 45.0%
ACAACTCTCCCATTGTGGTT+GGG - chr7_4:62701541-62701560 None:intergenic 45.0%
ATCGGCGATGCAACTTTCTA+TGG + chr7_4:62701661-62701680 Msa1169660:intron 45.0%
GCCAATTGATCTTCTCACAG+TGG + chr7_4:62701776-62701795 Msa1169660:three_prime_UTR 45.0%
! TGGTGTTTTCAGTTCAGTGC+TGG + chr7_4:62701802-62701821 Msa1169660:three_prime_UTR 45.0%
!!! TTTTTTTTTTTTTTTTGTAT+GGG - chr7_4:62701124-62701143 None:intergenic 5.0%
TGGAGAAGAAAGGAAGGAGG+AGG - chr7_4:62697480-62697499 None:intergenic 50.0%
AATCGGACGCTGGAGAAGAA+AGG - chr7_4:62697490-62697509 None:intergenic 50.0%
CGAGCGTAGATCGGTAAGAA+TGG - chr7_4:62697519-62697538 None:intergenic 50.0%
TATTTGGCGCGAGCGTAGAT+CGG - chr7_4:62697528-62697547 None:intergenic 50.0%
CTCTCTCTCTCTCTCTCTCT+AGG + chr7_4:62697635-62697654 Msa1169660:intron 50.0%
CGGAGTTTCGGACATATCGT+CGG - chr7_4:62697715-62697734 None:intergenic 50.0%
CGACGATATGTCCGAAACTC+CGG + chr7_4:62697713-62697732 Msa1169660:exon 50.0%
TGTTCACGGATGTTGGAACG+AGG - chr7_4:62697780-62697799 None:intergenic 50.0%
!! ACGGTCTTGTTCACGGATGT+TGG - chr7_4:62697787-62697806 None:intergenic 50.0%
GGCTGATGTTAGCGATAGGA+AGG - chr7_4:62697812-62697831 None:intergenic 50.0%
ATGCGGCTGATGTTAGCGAT+AGG - chr7_4:62697816-62697835 None:intergenic 50.0%
CTCGGAGACACATTCCTGAA+CGG - chr7_4:62697892-62697911 None:intergenic 50.0%
! CTTTGGGCGATGGCTACTTT+AGG + chr7_4:62698070-62698089 Msa1169660:CDS 50.0%
TGATACTAAGGGCTCTGCCA+AGG + chr7_4:62698675-62698694 Msa1169660:CDS 50.0%
GATACTAAGGGCTCTGCCAA+GGG + chr7_4:62698676-62698695 Msa1169660:CDS 50.0%
! GTTTCTAGGGGTGTGTTCTC+CGG - chr7_4:62698795-62698814 None:intergenic 50.0%
! TATGTGCTGGGGTGCTAGTA+GGG - chr7_4:62699070-62699089 None:intergenic 50.0%
! ATATGTGCTGGGGTGCTAGT+AGG - chr7_4:62699071-62699090 None:intergenic 50.0%
! CTTGTAATTGTTGGCTGGGG+AGG + chr7_4:62699492-62699511 Msa1169660:intron 50.0%
! TAATTGTTGGCTGGGGAGGA+TGG + chr7_4:62699496-62699515 Msa1169660:intron 50.0%
!! GGAGGATGGTTTGGTAGCTT+GGG + chr7_4:62699510-62699529 Msa1169660:intron 50.0%
!! GATGGTTTGGTAGCTTGGGT+GGG + chr7_4:62699514-62699533 Msa1169660:intron 50.0%
!! ATGGTTTGGTAGCTTGGGTG+GGG + chr7_4:62699515-62699534 Msa1169660:intron 50.0%
TAGAAACGGATACGGAGCAC+AGG - chr7_4:62700133-62700152 None:intergenic 50.0%
!!! GCTGTTTTCAGGTGTGGCAA+TGG - chr7_4:62700209-62700228 None:intergenic 50.0%
!!! TGAAGCGCTGTTTTCAGGTG+TGG - chr7_4:62700215-62700234 None:intergenic 50.0%
AAGGCTAGACAATGGCGGTA+TGG - chr7_4:62700438-62700457 None:intergenic 50.0%
ATACCGCCATTGTCTAGCCT+TGG + chr7_4:62700437-62700456 Msa1169660:intron 50.0%
! AGATTTGGGGTGTAGTGCGT+TGG - chr7_4:62700495-62700514 None:intergenic 50.0%
GCTGTAGCCATTCTTGCTAG+TGG + chr7_4:62700724-62700743 Msa1169660:intron 50.0%
TGGTGCACCACTAGCAAGAA+TGG - chr7_4:62700734-62700753 None:intergenic 50.0%
TAAGAGGCCAACCATGTTCG+AGG + chr7_4:62701427-62701446 Msa1169660:intron 50.0%
TGATGCTCCTCGAACATGGT+TGG - chr7_4:62701437-62701456 None:intergenic 50.0%
TGTCTGATGCTCCTCGAACA+TGG - chr7_4:62701441-62701460 None:intergenic 50.0%
CACTACGGTTCAGATCCCAA+CGG - chr7_4:62701488-62701507 None:intergenic 50.0%
TCCTTTAGGCCCAACCACAA+TGG + chr7_4:62701529-62701548 Msa1169660:intron 50.0%
CCTTTAGGCCCAACCACAAT+GGG + chr7_4:62701530-62701549 Msa1169660:intron 50.0%
CACAACTCTCCCATTGTGGT+TGG - chr7_4:62701542-62701561 None:intergenic 50.0%
ACCACAATGGGAGAGTTGTG+TGG + chr7_4:62701542-62701561 Msa1169660:intron 50.0%
TCCTATGCAAGGTCCAGAGT+AGG + chr7_4:62701747-62701766 Msa1169660:CDS 50.0%
ACCTACTCTGGACCTTGCAT+AGG - chr7_4:62701751-62701770 None:intergenic 50.0%
TGATCTTCTCACAGTGGTCG+TGG + chr7_4:62701782-62701801 Msa1169660:three_prime_UTR 50.0%
CGCTGGAGAAGAAAGGAAGG+AGG - chr7_4:62697483-62697502 None:intergenic 55.0%
GGACGCTGGAGAAGAAAGGA+AGG - chr7_4:62697486-62697505 None:intergenic 55.0%
ATGGAGAGAGAATCGGACGC+TGG - chr7_4:62697500-62697519 None:intergenic 55.0%
! ATGTGCTGGGGTGCTAGTAG+GGG - chr7_4:62699069-62699088 None:intergenic 55.0%
ATATGGTCCCTGCCACTCCT+TGG + chr7_4:62699414-62699433 Msa1169660:intron 55.0%
TATGGTCCCTGCCACTCCTT+GGG + chr7_4:62699415-62699434 Msa1169660:intron 55.0%
AGAAAGCCCAAGGAGTGGCA+GGG - chr7_4:62699424-62699443 None:intergenic 55.0%
TAGAAAGCCCAAGGAGTGGC+AGG - chr7_4:62699425-62699444 None:intergenic 55.0%
!! GGGAGGATGGTTTGGTAGCT+TGG + chr7_4:62699509-62699528 Msa1169660:intron 55.0%
!! GGATGGTTTGGTAGCTTGGG+TGG + chr7_4:62699513-62699532 Msa1169660:intron 55.0%
!! TGGTTTGGTAGCTTGGGTGG+GGG + chr7_4:62699516-62699535 Msa1169660:intron 55.0%
TAGCTTGGGTGGGGGAGTTA+AGG + chr7_4:62699524-62699543 Msa1169660:intron 55.0%
!! GCACCGCTGCTGAAGTGTTT+TGG - chr7_4:62700161-62700180 None:intergenic 55.0%
! TCCCCATTACTATGACGGGG+AGG + chr7_4:62700239-62700258 Msa1169660:intron 55.0%
GCCTCCCCGTCATAGTAATG+GGG - chr7_4:62700243-62700262 None:intergenic 55.0%
GGCCTCCCCGTCATAGTAAT+GGG - chr7_4:62700244-62700263 None:intergenic 55.0%
AGGCCTCCCCGTCATAGTAA+TGG - chr7_4:62700245-62700264 None:intergenic 55.0%
CCACCAAGGCTAGACAATGG+CGG - chr7_4:62700443-62700462 None:intergenic 55.0%
GCACCACCAAGGCTAGACAA+TGG - chr7_4:62700446-62700465 None:intergenic 55.0%
! GCTGATGATGTGCACCACCA+AGG - chr7_4:62700457-62700476 None:intergenic 55.0%
CCCATTGTGGTTGGGCCTAA+AGG - chr7_4:62701533-62701552 None:intergenic 55.0%
GCCACACAACTCTCCCATTG+TGG - chr7_4:62701546-62701565 None:intergenic 55.0%
CTTGATTCCTTCTGGCGGCT+TGG + chr7_4:62702007-62702026 Msa1169660:three_prime_UTR 55.0%
! GACTGTGTTCGCCGCTTTCG+TGG - chr7_4:62697758-62697777 None:intergenic 60.0%
ACTAAGGGCTCTGCCAAGGG+TGG + chr7_4:62698679-62698698 Msa1169660:CDS 60.0%
GCCAAGGGTGGAGACACATC+TGG + chr7_4:62698691-62698710 Msa1169660:CDS 60.0%
GCCAGATGTGTCTCCACCCT+TGG - chr7_4:62698695-62698714 None:intergenic 60.0%
GTTGGCTGGGGAGGATGGTT+TGG + chr7_4:62699501-62699520 Msa1169660:intron 60.0%
TGGGTGGGGGAGTTAAGGAG+CGG + chr7_4:62699529-62699548 Msa1169660:intron 60.0%
!! CCGCCATTGTCTAGCCTTGG+TGG + chr7_4:62700440-62700459 Msa1169660:intron 60.0%
TAGTTGTGGGTGACGAGCGG+TGG - chr7_4:62700534-62700553 None:intergenic 60.0%
ACCGCTCGTCACCCACAACT+AGG + chr7_4:62700533-62700552 Msa1169660:intron 60.0%
GCCTAGTTGTGGGTGACGAG+CGG - chr7_4:62700537-62700556 None:intergenic 60.0%
! TCCTTCTGGCGGCTTGGCAA+AGG + chr7_4:62702013-62702032 Msa1169660:three_prime_UTR 60.0%
TCCGAAACTCCGGCGAGTCC+TGG + chr7_4:62697723-62697742 Msa1169660:CDS 65.0%
GCCAGGACTCGCCGGAGTTT+CGG - chr7_4:62697727-62697746 None:intergenic 65.0%
GAAACTCCGGCGAGTCCTGG+CGG + chr7_4:62697726-62697745 Msa1169660:CDS 65.0%
! TGGGGTGCTAGTAGGGGCCA+GGG - chr7_4:62699063-62699082 None:intergenic 65.0%
GCCTTTGCCAAGCCGCCAGA+AGG - chr7_4:62702017-62702036 None:intergenic 65.0%
GGTGCTAGTAGGGGCCAGGG+GGG - chr7_4:62699060-62699079 None:intergenic 70.0%
GGGTGCTAGTAGGGGCCAGG+GGG - chr7_4:62699061-62699080 None:intergenic 70.0%
! GGGGTGCTAGTAGGGGCCAG+GGG - chr7_4:62699062-62699081 None:intergenic 70.0%
! CTGGGGTGCTAGTAGGGGCC+AGG - chr7_4:62699064-62699083 None:intergenic 70.0%
ACTCCGGCGAGTCCTGGCGG+CGG + chr7_4:62697729-62697748 Msa1169660:CDS 75.0%
CTTTCGTGGCTGCCGCCGCC+AGG - chr7_4:62697744-62697763 None:intergenic 75.0%
GGCGGCGGCAGCCACGAAAG+CGG + chr7_4:62697744-62697763 Msa1169660:CDS 75.0%
! CTGCCGCCGCCAGGACTCGC+CGG - chr7_4:62697735-62697754 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 62697392 62702180 62697392 ID=Msa1169660;Name=Msa1169660
chr7_4 mRNA 62697392 62702180 62697392 ID=Msa1169660-mRNA-1;Parent=Msa1169660;Name=Msa1169660-mRNA-1;_AED=0.06;_eAED=0.06;_QI=184|0.8|0.83|1|1|1|6|412|169
chr7_4 exon 62697392 62697563 62697392 ID=Msa1169660-mRNA-1:exon:19920;Parent=Msa1169660-mRNA-1
chr7_4 exon 62697708 62697934 62697708 ID=Msa1169660-mRNA-1:exon:19921;Parent=Msa1169660-mRNA-1
chr7_4 exon 62698015 62698144 62698015 ID=Msa1169660-mRNA-1:exon:19922;Parent=Msa1169660-mRNA-1
chr7_4 exon 62698673 62698747 62698673 ID=Msa1169660-mRNA-1:exon:19923;Parent=Msa1169660-mRNA-1
chr7_4 exon 62698863 62698913 62698863 ID=Msa1169660-mRNA-1:exon:19924;Parent=Msa1169660-mRNA-1
chr7_4 exon 62701730 62702180 62701730 ID=Msa1169660-mRNA-1:exon:19925;Parent=Msa1169660-mRNA-1
chr7_4 five_prime_UTR 62697392 62697563 62697392 ID=Msa1169660-mRNA-1:five_prime_utr;Parent=Msa1169660-mRNA-1
chr7_4 five_prime_UTR 62697708 62697719 62697708 ID=Msa1169660-mRNA-1:five_prime_utr;Parent=Msa1169660-mRNA-1
chr7_4 CDS 62697720 62697934 62697720 ID=Msa1169660-mRNA-1:cds;Parent=Msa1169660-mRNA-1
chr7_4 CDS 62698015 62698144 62698015 ID=Msa1169660-mRNA-1:cds;Parent=Msa1169660-mRNA-1
chr7_4 CDS 62698673 62698747 62698673 ID=Msa1169660-mRNA-1:cds;Parent=Msa1169660-mRNA-1
chr7_4 CDS 62698863 62698913 62698863 ID=Msa1169660-mRNA-1:cds;Parent=Msa1169660-mRNA-1
chr7_4 CDS 62701730 62701768 62701730 ID=Msa1169660-mRNA-1:cds;Parent=Msa1169660-mRNA-1
chr7_4 three_prime_UTR 62701769 62702180 62701769 ID=Msa1169660-mRNA-1:three_prime_utr;Parent=Msa1169660-mRNA-1
Gene Sequence

>Msa1169660

ATGTCCGAAACTCCGGCGAGTCCTGGCGGCGGCAGCCACGAAAGCGGCGAACACAGTCCTCGTTCCAACATCCGTGAACAAGACCGTTTCCTTCCTATCGCTAACATCAGCCGCATCATGAAAAAAGCTCTTCCTGCTAATGGTAAAATCGCCAAAGATGCTAAGGAAACCGTTCAGGAATGTGTCTCCGAGTTCATCAGCTTCATCACCAGCGAGGCCTCTGATAAGTGTCAGAGAGAGAAGAGGAAGACGATTAACGGTGATGATTTGCTTTGGGCGATGGCTACTTTAGGGTTTGAGGATTATATTGATCCTCTTAAGATTTACCTTACAAGATACAGAGAGGGTGATACTAAGGGCTCTGCCAAGGGTGGAGACACATCTGGCAAAAAAGATGTTCAACAAGGTTCTAATCCTCAGCTTGTTCATCAAGGTTCTTTCTCACAAGGTGTTTCCTACACAAATTCTCAGGGTCAACATATGATGGTTCCTATGCAAGGTCCAGAGTAG

Protein sequence

>Msa1169660

MSETPASPGGGSHESGEHSPRSNIREQDRFLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREGDTKGSAKGGDTSGKKDVQQGSNPQLVHQGSFSQGVSYTNSQGQHMMVPMQGPE*