Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417580 | sp|Q5EAW4|MCM10_XENLA | 30.049 | 203 | 137 | 4 | 63 | 261 | 221 | 422 | 2.19e-25 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417580 | G7J8I4 | 92.512 | 414 | 25 | 4 | 1 | 410 | 1 | 412 | 0.0 | 751 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020540 | Msa1417580 | 0.800259 | 1.567404e-48 | -8.615850e-47 |
| Msa1364950 | Msa1417580 | 0.946622 | 3.248596e-105 | -8.615850e-47 |
| Msa1417580 | Msa1435530 | 0.932351 | 9.702140e-95 | -8.615850e-47 |
| Msa1417580 | Msa1465360 | 0.801499 | 8.750116e-49 | -8.615850e-47 |
| Msa0681050 | Msa1417580 | 0.807260 | 5.512518e-50 | -8.615850e-47 |
| Msa0159620 | Msa1417580 | 0.805143 | 1.538940e-49 | -8.615850e-47 |
| Msa0989370 | Msa1417580 | 0.804916 | 1.716621e-49 | -8.615850e-47 |
| Msa1183740 | Msa1417580 | 0.802815 | 4.689520e-49 | -8.615850e-47 |
| Msa0524280 | Msa1417580 | 0.899498 | 1.868045e-77 | -8.615850e-47 |
| Msa0524390 | Msa1417580 | 0.913047 | 9.674233e-84 | -8.615850e-47 |
| Msa0545920 | Msa1417580 | 0.805760 | 1.142713e-49 | -8.615850e-47 |
| Msa0601720 | Msa1417580 | 0.806297 | 8.806428e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417580 | MtrunA17_Chr3g0145611 | 92.512 | 414 | 25 | 4 | 1 | 410 | 1 | 412 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417580 | AT2G20980.1 | 50.620 | 403 | 166 | 9 | 17 | 409 | 17 | 396 | 4.03e-116 | 344 |
Find 136 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGATCATTTGGAGTCTT+TGG | 0.125778 | tig0024501:-15475 | None:intergenic |
| GGAGAAGCGGGAGGGGTTTC+AGG | 0.144299 | tig0024501:-12963 | None:intergenic |
| AGGGGTTTGGTAATGGATTT+AGG | 0.166281 | tig0024501:-13107 | None:intergenic |
| GAAATCATCTTCTGTTAATA+TGG | 0.187113 | tig0024501:+15616 | Msa1417580:CDS |
| AGGTGCCCATCTTCATAATT+TGG | 0.237873 | tig0024501:-13691 | None:intergenic |
| TGCTTTCTGCCATAAGTTAT+AGG | 0.239694 | tig0024501:-14894 | None:intergenic |
| TTGGTAATGGATTTAGGGTT+AGG | 0.247428 | tig0024501:-13101 | None:intergenic |
| AGTGAACCTTCGAAACTATA+TGG | 0.258865 | tig0024501:-15893 | None:intergenic |
| CATATGGAAAATTGGTTCTT+TGG | 0.260862 | tig0024501:+13443 | Msa1417580:CDS |
| TTTATTTCTCTTAGTTATAT+TGG | 0.272528 | tig0024501:+15967 | Msa1417580:three_prime_UTR |
| AGCTATTGCATATGGAAAAT+TGG | 0.275020 | tig0024501:+13435 | Msa1417580:CDS |
| CATCTTGCCTGTACTCTTTG+TGG | 0.306180 | tig0024501:-15717 | None:intergenic |
| GTAGATAACCTAGTAAAATT+TGG | 0.307826 | tig0024501:-16001 | None:intergenic |
| GAAACTTAAGAACAGCATTT+AGG | 0.310137 | tig0024501:+15058 | Msa1417580:intron |
| GGATTTAGGGTTAGGGTTAG+AGG | 0.317608 | tig0024501:-13093 | None:intergenic |
| CTCTTAGTTATATTGGTAGT+AGG | 0.320201 | tig0024501:+15974 | Msa1417580:three_prime_UTR |
| GTGCATTTGCTTTGATCATT+TGG | 0.328321 | tig0024501:-15484 | None:intergenic |
| ACCAGAGAATTTGTCAAGTT+GGG | 0.333949 | tig0024501:-13141 | None:intergenic |
| TCTGTGTATATTCAGGAATT+TGG | 0.341989 | tig0024501:+13326 | Msa1417580:intron |
| CCCATCTTCATAATTTGGTT+AGG | 0.353508 | tig0024501:-13686 | None:intergenic |
| AGATTTCTTTCTGAGATTGC+AGG | 0.358419 | tig0024501:+15325 | Msa1417580:CDS |
| GGGGTTTGGTAATGGATTTA+GGG | 0.358994 | tig0024501:-13106 | None:intergenic |
| ATCCACTAACCTATAACTTA+TGG | 0.367477 | tig0024501:+14885 | Msa1417580:CDS |
| AGGGTTAGGGTTAGAGGGTT+GGG | 0.369684 | tig0024501:-13087 | None:intergenic |
| GTGTATCAAAGAAAAGAAAA+AGG | 0.374356 | tig0024501:+12886 | Msa1417580:five_prime_UTR |
| GGGATCGTCGGTGAGGGGTT+TGG | 0.378542 | tig0024501:-13120 | None:intergenic |
| ATTCAGAAAACAAGTTCAAA+TGG | 0.379635 | tig0024501:+13408 | Msa1417580:CDS |
| AACTTATTATTTAAAACAGT+TGG | 0.380158 | tig0024501:+16142 | Msa1417580:three_prime_UTR |
| TGCCATAAGTTATAGGTTAG+TGG | 0.382941 | tig0024501:-14887 | None:intergenic |
| TTCTTTATTGTGCAGGACTT+TGG | 0.384179 | tig0024501:-15944 | None:intergenic |
| GTGAATGGAGATTCTTTCTC+TGG | 0.384793 | tig0024501:+13348 | Msa1417580:CDS |
| GTCGGTGAGGGGTTTGGTAA+TGG | 0.386273 | tig0024501:-13114 | None:intergenic |
| GAGATTCTTTCTCTGGAAGT+TGG | 0.388819 | tig0024501:+13355 | Msa1417580:CDS |
| TATCTACATTGTTATCAGTT+GGG | 0.389092 | tig0024501:+16017 | Msa1417580:three_prime_UTR |
| TGAATTAGATCTTATTAGTT+CGG | 0.393103 | tig0024501:+15742 | Msa1417580:CDS |
| GACCAGAGAATTTGTCAAGT+TGG | 0.402451 | tig0024501:-13142 | None:intergenic |
| GTCGTCAAACCACGAAGATC+TGG | 0.403762 | tig0024501:+12911 | Msa1417580:CDS |
| GTTTAACCCCTGCTGAGCTT+AGG | 0.407094 | tig0024501:+13183 | Msa1417580:CDS |
| GTCAATGAATATATCATTCA+AGG | 0.409842 | tig0024501:+16106 | Msa1417580:three_prime_UTR |
| CCATCTTCATAATTTGGTTA+GGG | 0.413959 | tig0024501:-13685 | None:intergenic |
| TCTGGAAGTTGGGTCACTGT+TGG | 0.427782 | tig0024501:+13366 | Msa1417580:CDS |
| TTTAACCCCTGCTGAGCTTA+GGG | 0.429241 | tig0024501:+13184 | Msa1417580:CDS |
| TTGAACGGCGTCTCTGAAAA+CGG | 0.430849 | tig0024501:-13051 | None:intergenic |
| AAATAAATTCTTTATTGTGC+AGG | 0.432010 | tig0024501:-15951 | None:intergenic |
| AGATTCTTTCTCTGGAAGTT+GGG | 0.432795 | tig0024501:+13356 | Msa1417580:CDS |
| AAAGACAGAGAGGCAAGGTT+TGG | 0.444726 | tig0024501:+15685 | Msa1417580:CDS |
| GATTTAGGGTTAGGGTTAGA+GGG | 0.445132 | tig0024501:-13092 | None:intergenic |
| TAGGGTTAGGGTTAGAGGGT+TGG | 0.445470 | tig0024501:-13088 | None:intergenic |
| CGATGGGATGGCTTGTACAC+TGG | 0.447414 | tig0024501:+13748 | Msa1417580:CDS |
| TGGTAATGGATTTAGGGTTA+GGG | 0.451006 | tig0024501:-13100 | None:intergenic |
| CCCTAACCAAATTATGAAGA+TGG | 0.457187 | tig0024501:+13685 | Msa1417580:CDS |
| ATGGGAAGAGCTATTGCATA+TGG | 0.459558 | tig0024501:+13427 | Msa1417580:CDS |
| CCCCAACTTGACAAATTCTC+TGG | 0.465454 | tig0024501:+13140 | Msa1417580:CDS |
| CGGAGAAGGAGAAGCGGGAG+GGG | 0.466441 | tig0024501:-12970 | None:intergenic |
| AAGTTGGGGATCGTCGGTGA+GGG | 0.467511 | tig0024501:-13126 | None:intergenic |
| TCTTAGTTATATTGGTAGTA+GGG | 0.467662 | tig0024501:+15975 | Msa1417580:three_prime_UTR |
| AAATCATCTTCTGTTAATAT+GGG | 0.469854 | tig0024501:+15617 | Msa1417580:CDS |
| ATGGGCACCTCTGTTGATTA+CGG | 0.470419 | tig0024501:+13704 | Msa1417580:CDS |
| AACACAACACACGATGACTT+TGG | 0.476542 | tig0024501:-12863 | None:intergenic |
| ACAGATTCCCTAAGCTCAGC+AGG | 0.478207 | tig0024501:-13191 | None:intergenic |
| ATCTACATTGTTATCAGTTG+GGG | 0.484820 | tig0024501:+16018 | Msa1417580:three_prime_UTR |
| TCTCTGAAAACGGACATATC+AGG | 0.488594 | tig0024501:-13041 | None:intergenic |
| ATCAAGCGGAGAAGGAGAAG+CGG | 0.493496 | tig0024501:-12976 | None:intergenic |
| TGAATATATCATTCAAGGGT+TGG | 0.494428 | tig0024501:+16111 | Msa1417580:three_prime_UTR |
| TTATCTACATTGTTATCAGT+TGG | 0.496099 | tig0024501:+16016 | Msa1417580:three_prime_UTR |
| TCAAGCGGAGAAGGAGAAGC+GGG | 0.501964 | tig0024501:-12975 | None:intergenic |
| TTCAGAAAACAAGTTCAAAT+GGG | 0.504697 | tig0024501:+13409 | Msa1417580:CDS |
| GCGGAGAAGGAGAAGCGGGA+GGG | 0.505756 | tig0024501:-12971 | None:intergenic |
| TTGATTACGGAGTTTGCAAA+GGG | 0.522380 | tig0024501:+13717 | Msa1417580:CDS |
| TCTGACTTGAGATAATCTCT+TGG | 0.522461 | tig0024501:-15081 | None:intergenic |
| ATATTCAGGAATTTGGTGAA+TGG | 0.526400 | tig0024501:+13333 | Msa1417580:intron |
| AGCAGGGGTTAAACATTGGT+TGG | 0.526618 | tig0024501:-13174 | None:intergenic |
| GAAGAAGAATACTTAATGAC+GGG | 0.529158 | tig0024501:-13239 | None:intergenic |
| GTGAACCTTCGAAACTATAT+GGG | 0.530499 | tig0024501:-15892 | None:intergenic |
| TAGTGCCCATATAGTTTCGA+AGG | 0.533679 | tig0024501:+15887 | Msa1417580:three_prime_UTR |
| TGCTGTGTCTTACAAGCATA+GGG | 0.539214 | tig0024501:+13013 | Msa1417580:CDS |
| CACTGTACGAACTGAACTCA+AGG | 0.539230 | tig0024501:+14931 | Msa1417580:CDS |
| AAGAAAATAAATACTACCGC+GGG | 0.542071 | tig0024501:+15835 | Msa1417580:three_prime_UTR |
| ATGCTGTGTCTTACAAGCAT+AGG | 0.543398 | tig0024501:+13012 | Msa1417580:CDS |
| TACTGTCCGCAAGGATGCCA+AGG | 0.550767 | tig0024501:+13557 | Msa1417580:CDS |
| TCAATGAATATATCATTCAA+GGG | 0.551217 | tig0024501:+16107 | Msa1417580:three_prime_UTR |
| GTTGGAGTGTTAACTGAGAA+GGG | 0.555349 | tig0024501:+13384 | Msa1417580:CDS |
| TCATCAGCATCAAGCGGAGA+AGG | 0.555395 | tig0024501:-12984 | None:intergenic |
| TAAATACTACCGCGGGGTGG+TGG | 0.556114 | tig0024501:+15842 | Msa1417580:three_prime_UTR |
| CCAGAGAATTTGTCAAGTTG+GGG | 0.563311 | tig0024501:-13140 | None:intergenic |
| TTTGTCAAGTTGGGGATCGT+CGG | 0.563964 | tig0024501:-13132 | None:intergenic |
| TGTTGGAGTGTTAACTGAGA+AGG | 0.564287 | tig0024501:+13383 | Msa1417580:CDS |
| GTTGATTACGGAGTTTGCAA+AGG | 0.565498 | tig0024501:+13716 | Msa1417580:CDS |
| CAAGTTGGGGATCGTCGGTG+AGG | 0.565523 | tig0024501:-13127 | None:intergenic |
| AGAAGAAGAATACTTAATGA+CGG | 0.565529 | tig0024501:-13240 | None:intergenic |
| AGTTGGGGATCGTCGGTGAG+GGG | 0.571103 | tig0024501:-13125 | None:intergenic |
| CATCTTCATAATTTGGTTAG+GGG | 0.573813 | tig0024501:-13684 | None:intergenic |
| GATAAAGCCACAAAGAGTAC+AGG | 0.574304 | tig0024501:+15710 | Msa1417580:CDS |
| CTCTGTCGTGAAGAGAAAGC+AGG | 0.575382 | tig0024501:-12938 | None:intergenic |
| CCTAACCAAATTATGAAGAT+GGG | 0.576980 | tig0024501:+13686 | Msa1417580:CDS |
| GCAGGAGATCCAGATCTTCG+TGG | 0.577212 | tig0024501:-12920 | None:intergenic |
| TCAGAGGAACTGTCAAGAGA+AGG | 0.578844 | tig0024501:+13506 | Msa1417580:CDS |
| TGCAAAGGGAAAAGAGCCGA+TGG | 0.578899 | tig0024501:+13731 | Msa1417580:CDS |
| ATCTGTGGATGGTATCAGAA+AGG | 0.579951 | tig0024501:+15173 | Msa1417580:CDS |
| AGATCTTATTAGTTCGGACG+AGG | 0.580223 | tig0024501:+15748 | Msa1417580:CDS |
| GTGAAATTGTTATCTGTGGA+TGG | 0.582479 | tig0024501:+15162 | Msa1417580:CDS |
| AGCGGAGAAGGAGAAGCGGG+AGG | 0.584047 | tig0024501:-12972 | None:intergenic |
| TGTCATAAGAAACCAGCAGT+TGG | 0.585566 | tig0024501:+15649 | Msa1417580:CDS |
| GCTCAGCAGGGGTTAAACAT+TGG | 0.588791 | tig0024501:-13178 | None:intergenic |
| AGGGAAAAGAGCCGATGGGA+TGG | 0.594074 | tig0024501:+13736 | Msa1417580:CDS |
| AGAATTGAAGAGTGCAAAGA+CGG | 0.594442 | tig0024501:-13535 | None:intergenic |
| AGAGATTATCTCAAGTCAGA+AGG | 0.595620 | tig0024501:+15084 | Msa1417580:CDS |
| AAGAATACTTAATGACGGGT+AGG | 0.599067 | tig0024501:-13235 | None:intergenic |
| CTTGAGTTCAGTTCGTACAG+TGG | 0.599594 | tig0024501:-14930 | None:intergenic |
| GCAAGTGAAATTGTTATCTG+TGG | 0.600173 | tig0024501:+15158 | Msa1417580:CDS |
| ACAACAGCTTCACACTCGCA+AGG | 0.603557 | tig0024501:+15298 | Msa1417580:CDS |
| CTTCAATTCTACTGTCCGCA+AGG | 0.606230 | tig0024501:+13548 | Msa1417580:CDS |
| TGTTTGGTAATGCTTATCAG+AGG | 0.614875 | tig0024501:+13490 | Msa1417580:CDS |
| CAACAGCTTCACACTCGCAA+GGG | 0.617797 | tig0024501:+15299 | Msa1417580:CDS |
| TTTCGACGGACAACAAGGGA+GGG | 0.619606 | tig0024501:-12805 | None:intergenic |
| ATATATCATTCAAGGGTTGG+TGG | 0.622516 | tig0024501:+16114 | Msa1417580:three_prime_UTR |
| AGGAACTGTCAAGAGAAGGA+AGG | 0.627697 | tig0024501:+13510 | Msa1417580:CDS |
| AAAGCAAATGCACAGCGAAG+AGG | 0.629693 | tig0024501:+15494 | Msa1417580:CDS |
| TTGGAGTGTTAACTGAGAAG+GGG | 0.630678 | tig0024501:+13385 | Msa1417580:CDS |
| TACGAACTGAACTCAAGGGA+GGG | 0.632715 | tig0024501:+14936 | Msa1417580:CDS |
| CAGATTCCCTAAGCTCAGCA+GGG | 0.634673 | tig0024501:-13190 | None:intergenic |
| TCGTCATCATCAGCATCAAG+CGG | 0.640174 | tig0024501:-12990 | None:intergenic |
| ATGGTATCAGAAAGGCATTG+AGG | 0.644692 | tig0024501:+15181 | Msa1417580:CDS |
| CAGTGTACAAGCCATCCCAT+CGG | 0.645912 | tig0024501:-13747 | None:intergenic |
| AGAGTAAAGACAGAGAGGCA+AGG | 0.646421 | tig0024501:+15680 | Msa1417580:CDS |
| AATATACCTTGGCATCCTTG+CGG | 0.655962 | tig0024501:-13563 | None:intergenic |
| TTAAAAGAGTAAAGACAGAG+AGG | 0.656016 | tig0024501:+15675 | Msa1417580:CDS |
| GCAAAGGGAAAAGAGCCGAT+GGG | 0.669274 | tig0024501:+13732 | Msa1417580:CDS |
| GTACGAACTGAACTCAAGGG+AGG | 0.674064 | tig0024501:+14935 | Msa1417580:CDS |
| GGTATGAAGACAATCTTGAA+CGG | 0.675223 | tig0024501:-13066 | None:intergenic |
| AGATTCCCTAAGCTCAGCAG+GGG | 0.676546 | tig0024501:-13189 | None:intergenic |
| GAAGAAAATAAATACTACCG+CGG | 0.677777 | tig0024501:+15834 | Msa1417580:three_prime_UTR |
| ACTGTACGAACTGAACTCAA+GGG | 0.685568 | tig0024501:+14932 | Msa1417580:CDS |
| GCAAACTCCGTAATCAACAG+AGG | 0.699830 | tig0024501:-13711 | None:intergenic |
| AAATAAATACTACCGCGGGG+TGG | 0.707092 | tig0024501:+15839 | Msa1417580:three_prime_UTR |
| AGAAAATAAATACTACCGCG+GGG | 0.751461 | tig0024501:+15836 | Msa1417580:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATATGAAATAATTAAA+TGG | - | tig0024501:14835-14854 | None:intergenic | 10.0% |
| !!! | TTATTTTGATTATTTAACTG+TGG | + | tig0024501:13806-13825 | Msa1417580:intron | 15.0% |
| !! | TTTACGTCTATTAATAAATA+TGG | - | tig0024501:14252-14271 | None:intergenic | 15.0% |
| !! | CTTTACAAAAGTAATAAAAA+GGG | - | tig0024501:14612-14631 | None:intergenic | 15.0% |
| !! | ACTTTACAAAAGTAATAAAA+AGG | - | tig0024501:14613-14632 | None:intergenic | 15.0% |
| !!! | TTTATTTCTCTTAGTTATAT+TGG | + | tig0024501:15967-15986 | Msa1417580:three_prime_UTR | 15.0% |
| !!! | AACTTATTATTTAAAACAGT+TGG | + | tig0024501:16142-16161 | Msa1417580:three_prime_UTR | 15.0% |
| !! | AAATTGCATATACAATGATT+GGG | - | tig0024501:13872-13891 | None:intergenic | 20.0% |
| !! | TAAATTGCATATACAATGAT+TGG | - | tig0024501:13873-13892 | None:intergenic | 20.0% |
| !! | TTAATAGACGTAAAACTATA+TGG | + | tig0024501:14258-14277 | Msa1417580:intron | 20.0% |
| !!! | AGAAAAACTAAACTTTGAAA+TGG | + | tig0024501:14319-14338 | Msa1417580:intron | 20.0% |
| !!! | TATTACTTTTGTAAAGTTTG+AGG | + | tig0024501:14415-14434 | Msa1417580:intron | 20.0% |
| !!! | ATTACTTTTGTAAAGTTTGA+GGG | + | tig0024501:14416-14435 | Msa1417580:intron | 20.0% |
| !!! | CTTTTATAAGAACTTGAAAT+AGG | - | tig0024501:14972-14991 | None:intergenic | 20.0% |
| !!! | AGACTAACTGTTAATTTTAA+TGG | + | tig0024501:15353-15372 | Msa1417580:intron | 20.0% |
| !! | GATAATAAATAACATGTAAC+AGG | - | tig0024501:15591-15610 | None:intergenic | 20.0% |
| !!! | ACATGTTATTTATTATCTTC+AGG | + | tig0024501:15594-15613 | Msa1417580:intron | 20.0% |
| !! | AAATCATCTTCTGTTAATAT+GGG | + | tig0024501:15617-15636 | Msa1417580:CDS | 20.0% |
| !! | TGAATTAGATCTTATTAGTT+CGG | + | tig0024501:15742-15761 | Msa1417580:CDS | 20.0% |
| !! | AAATAAATTCTTTATTGTGC+AGG | - | tig0024501:15954-15973 | None:intergenic | 20.0% |
| !!! | TACTTAACTTATCTTTTGAA+AGG | - | tig0024501:16083-16102 | None:intergenic | 20.0% |
| !! | TCAATGAATATATCATTCAA+GGG | + | tig0024501:16107-16126 | Msa1417580:three_prime_UTR | 20.0% |
| !!! | ACTTTGGTTAGTTTTGTTTA+GGG | - | tig0024501:12850-12869 | None:intergenic | 25.0% |
| ! | GTGTATCAAAGAAAAGAAAA+AGG | + | tig0024501:12886-12905 | Msa1417580:five_prime_UTR | 25.0% |
| ! | AGAAGAAGAATACTTAATGA+CGG | - | tig0024501:13243-13262 | None:intergenic | 25.0% |
| ! | ATTCAGAAAACAAGTTCAAA+TGG | + | tig0024501:13408-13427 | Msa1417580:CDS | 25.0% |
| ! | TTCAGAAAACAAGTTCAAAT+GGG | + | tig0024501:13409-13428 | Msa1417580:CDS | 25.0% |
| !!! | ACTATTTCTCTTTTCTTGTT+TGG | + | tig0024501:13474-13493 | Msa1417580:CDS | 25.0% |
| ! | GAAATAAAAAGAGATTTCAG+AGG | - | tig0024501:13622-13641 | None:intergenic | 25.0% |
| !!! | TTTATTTCTCTTGCTTTTGA+AGG | + | tig0024501:13634-13653 | Msa1417580:intron | 25.0% |
| !!! | TTATTTCTCTTGCTTTTGAA+GGG | + | tig0024501:13635-13654 | Msa1417580:intron | 25.0% |
| ! | TTGTATATGCAATTTACCAA+AGG | + | tig0024501:13877-13896 | Msa1417580:intron | 25.0% |
| ! | ATCAGACTTATTTCAGTAAA+TGG | - | tig0024501:13967-13986 | None:intergenic | 25.0% |
| ! | ATAAGTCTGATTTAAATGTG+TGG | + | tig0024501:13976-13995 | Msa1417580:intron | 25.0% |
| ! | GGTGACAAATAAAATAAAAG+AGG | + | tig0024501:14064-14083 | Msa1417580:intron | 25.0% |
| !! | GCAATCTATAAGTCTTATAT+TGG | + | tig0024501:14280-14299 | Msa1417580:intron | 25.0% |
| !!! | TTACTTTTGTAAAGTTTGAG+GGG | + | tig0024501:14417-14436 | Msa1417580:intron | 25.0% |
| ! | AGAAACAGAATAATAATCCT+GGG | - | tig0024501:14647-14666 | None:intergenic | 25.0% |
| ! | TGTAAGAAGAAAAAGAAACA+TGG | - | tig0024501:14707-14726 | None:intergenic | 25.0% |
| ! | CCTGAAATAACAAAGATTAA+TGG | - | tig0024501:14772-14791 | None:intergenic | 25.0% |
| !!! | CCATTAATCTTTGTTATTTC+AGG | + | tig0024501:14769-14788 | Msa1417580:intron | 25.0% |
| !!! | TTTTGATTTCATATGACATG+TGG | + | tig0024501:15004-15023 | Msa1417580:intron | 25.0% |
| !!! | CTTTTTCAAGTTTGTTTTGT+CGG | - | tig0024501:15133-15152 | None:intergenic | 25.0% |
| !!! | GGTTCTTTTTTCATCATTTT+TGG | - | tig0024501:15457-15476 | None:intergenic | 25.0% |
| ! | GAAATCATCTTCTGTTAATA+TGG | + | tig0024501:15616-15635 | Msa1417580:CDS | 25.0% |
| !! | TCTTAGTTATATTGGTAGTA+GGG | + | tig0024501:15975-15994 | Msa1417580:three_prime_UTR | 25.0% |
| ! | GTAGATAACCTAGTAAAATT+TGG | - | tig0024501:16004-16023 | None:intergenic | 25.0% |
| ! | TTATCTACATTGTTATCAGT+TGG | + | tig0024501:16016-16035 | Msa1417580:three_prime_UTR | 25.0% |
| ! | TATCTACATTGTTATCAGTT+GGG | + | tig0024501:16017-16036 | Msa1417580:three_prime_UTR | 25.0% |
| ! | GTCAATGAATATATCATTCA+AGG | + | tig0024501:16106-16125 | Msa1417580:three_prime_UTR | 25.0% |
| !!! | GACTTTGGTTAGTTTTGTTT+AGG | - | tig0024501:12851-12870 | None:intergenic | 30.0% |
| GAAGAAGAATACTTAATGAC+GGG | - | tig0024501:13242-13261 | None:intergenic | 30.0% | |
| TCTGTGTATATTCAGGAATT+TGG | + | tig0024501:13326-13345 | Msa1417580:intron | 30.0% | |
| ! | ATATTCAGGAATTTGGTGAA+TGG | + | tig0024501:13333-13352 | Msa1417580:intron | 30.0% |
| AGCTATTGCATATGGAAAAT+TGG | + | tig0024501:13435-13454 | Msa1417580:CDS | 30.0% | |
| ! | CATATGGAAAATTGGTTCTT+TGG | + | tig0024501:13443-13462 | Msa1417580:CDS | 30.0% |
| AGATGATAAGGAATATACCT+TGG | - | tig0024501:13577-13596 | None:intergenic | 30.0% | |
| AAAAATGGAAGCAGATGATA+AGG | - | tig0024501:13589-13608 | None:intergenic | 30.0% | |
| CATCTTCATAATTTGGTTAG+GGG | - | tig0024501:13687-13706 | None:intergenic | 30.0% | |
| CCATCTTCATAATTTGGTTA+GGG | - | tig0024501:13688-13707 | None:intergenic | 30.0% | |
| CCTAACCAAATTATGAAGAT+GGG | + | tig0024501:13686-13705 | Msa1417580:CDS | 30.0% | |
| TTTAACTGTGGAATTGCAAT+AGG | + | tig0024501:13818-13837 | Msa1417580:intron | 30.0% | |
| CTGATTTAAATGTGTGGAAT+TGG | + | tig0024501:13982-14001 | Msa1417580:intron | 30.0% | |
| CAGATGTGAATTATGATTCA+TGG | - | tig0024501:14145-14164 | None:intergenic | 30.0% | |
| !!! | GAAAGCTCAATCTTGTTTTT+AGG | + | tig0024501:14341-14360 | Msa1417580:intron | 30.0% |
| CTTTGTATATTCCCTTAAAC+TGG | - | tig0024501:14369-14388 | None:intergenic | 30.0% | |
| ATAATAATCCTGGGACATAA+TGG | - | tig0024501:14638-14657 | None:intergenic | 30.0% | |
| CAGAAACAGAATAATAATCC+TGG | - | tig0024501:14648-14667 | None:intergenic | 30.0% | |
| !! | GAAAAGTATTAATCGAAGTC+TGG | - | tig0024501:14676-14695 | None:intergenic | 30.0% |
| AAAAAGAAACATGGTTGACA+AGG | - | tig0024501:14698-14717 | None:intergenic | 30.0% | |
| ATCCACTAACCTATAACTTA+TGG | + | tig0024501:14885-14904 | Msa1417580:CDS | 30.0% | |
| GAAACTTAAGAACAGCATTT+AGG | + | tig0024501:15058-15077 | Msa1417580:intron | 30.0% | |
| TTAAAAGAGTAAAGACAGAG+AGG | + | tig0024501:15675-15694 | Msa1417580:CDS | 30.0% | |
| GAAGAAAATAAATACTACCG+CGG | + | tig0024501:15834-15853 | Msa1417580:three_prime_UTR | 30.0% | |
| AAGAAAATAAATACTACCGC+GGG | + | tig0024501:15835-15854 | Msa1417580:three_prime_UTR | 30.0% | |
| ! | CTCTTAGTTATATTGGTAGT+AGG | + | tig0024501:15974-15993 | Msa1417580:three_prime_UTR | 30.0% |
| ! | TAGGGATACCAAATTTTACT+AGG | + | tig0024501:15993-16012 | Msa1417580:three_prime_UTR | 30.0% |
| ATCTACATTGTTATCAGTTG+GGG | + | tig0024501:16018-16037 | Msa1417580:three_prime_UTR | 30.0% | |
| TGAATATATCATTCAAGGGT+TGG | + | tig0024501:16111-16130 | Msa1417580:three_prime_UTR | 30.0% | |
| !! | GTTTTCAAGCTGATTTTCGA+CGG | - | tig0024501:12822-12841 | None:intergenic | 35.0% |
| GGTATGAAGACAATCTTGAA+CGG | - | tig0024501:13069-13088 | None:intergenic | 35.0% | |
| !! | TGGTAATGGATTTAGGGTTA+GGG | - | tig0024501:13103-13122 | None:intergenic | 35.0% |
| !! | TTGGTAATGGATTTAGGGTT+AGG | - | tig0024501:13104-13123 | None:intergenic | 35.0% |
| ACCAGAGAATTTGTCAAGTT+GGG | - | tig0024501:13144-13163 | None:intergenic | 35.0% | |
| !! | AAGAATACTTAATGACGGGT+AGG | - | tig0024501:13238-13257 | None:intergenic | 35.0% |
| GATTCTGTCTGTGTATATTC+AGG | + | tig0024501:13319-13338 | Msa1417580:intron | 35.0% | |
| ! | AGATTCTTTCTCTGGAAGTT+GGG | + | tig0024501:13356-13375 | Msa1417580:CDS | 35.0% |
| !! | TGTTTGGTAATGCTTATCAG+AGG | + | tig0024501:13490-13509 | Msa1417580:CDS | 35.0% |
| ! | AGAATTGAAGAGTGCAAAGA+CGG | - | tig0024501:13538-13557 | None:intergenic | 35.0% |
| CCCTAACCAAATTATGAAGA+TGG | + | tig0024501:13685-13704 | Msa1417580:CDS | 35.0% | |
| CCCATCTTCATAATTTGGTT+AGG | - | tig0024501:13689-13708 | None:intergenic | 35.0% | |
| TTGATTACGGAGTTTGCAAA+GGG | + | tig0024501:13717-13736 | Msa1417580:CDS | 35.0% | |
| GTAGTTACTCTTTACTCCTT+TGG | - | tig0024501:13896-13915 | None:intergenic | 35.0% | |
| ! | TTGATAGCCATTCAATAGCT+TGG | + | tig0024501:14112-14131 | Msa1417580:intron | 35.0% |
| !!! | TGTTTTTAGGTGCCAGTTTA+AGG | + | tig0024501:14354-14373 | Msa1417580:intron | 35.0% |
| !!! | GTTTTTAGGTGCCAGTTTAA+GGG | + | tig0024501:14355-14374 | Msa1417580:intron | 35.0% |
| TAAAGTTGTTGTCATGTGAC+TGG | + | tig0024501:14458-14477 | Msa1417580:intron | 35.0% | |
| ! | TAACCCTCTTTTTACACAAG+AGG | - | tig0024501:14513-14532 | None:intergenic | 35.0% |
| TCTTGTGTAAAAAGAGGGTT+AGG | + | tig0024501:14512-14531 | Msa1417580:intron | 35.0% | |
| GTTGCATACAATACACCAAA+TGG | + | tig0024501:14534-14553 | Msa1417580:intron | 35.0% | |
| CATACAATACACCAAATGGT+GGG | + | tig0024501:14538-14557 | Msa1417580:intron | 35.0% | |
| AAGTAATAAAAAGGGCAACC+CGG | - | tig0024501:14604-14623 | None:intergenic | 35.0% | |
| TAAAGTTTCCATTATGTCCC+AGG | + | tig0024501:14627-14646 | Msa1417580:intron | 35.0% | |
| !! | TTTGTTATTTCAGGCGTCAA+GGG | + | tig0024501:14778-14797 | Msa1417580:intron | 35.0% |
| ATCAGCATTCTATTGTAGCA+AGG | + | tig0024501:14856-14875 | Msa1417580:intron | 35.0% | |
| TGCCATAAGTTATAGGTTAG+TGG | - | tig0024501:14890-14909 | None:intergenic | 35.0% | |
| TGCTTTCTGCCATAAGTTAT+AGG | - | tig0024501:14897-14916 | None:intergenic | 35.0% | |
| GTGGATGTAACATATACATG+TGG | + | tig0024501:15023-15042 | Msa1417580:intron | 35.0% | |
| ! | TCTGACTTGAGATAATCTCT+TGG | - | tig0024501:15084-15103 | None:intergenic | 35.0% |
| AGAGATTATCTCAAGTCAGA+AGG | + | tig0024501:15084-15103 | Msa1417580:CDS | 35.0% | |
| GCAAGTGAAATTGTTATCTG+TGG | + | tig0024501:15158-15177 | Msa1417580:CDS | 35.0% | |
| GTGAAATTGTTATCTGTGGA+TGG | + | tig0024501:15162-15181 | Msa1417580:CDS | 35.0% | |
| !! | AATTTTGATACCAGCAATGC+AGG | + | tig0024501:15268-15287 | Msa1417580:intron | 35.0% |
| !! | AGATTTCTTTCTGAGATTGC+AGG | + | tig0024501:15325-15344 | Msa1417580:CDS | 35.0% |
| ! | CTTTGATCATTTGGAGTCTT+TGG | - | tig0024501:15478-15497 | None:intergenic | 35.0% |
| GTGCATTTGCTTTGATCATT+TGG | - | tig0024501:15487-15506 | None:intergenic | 35.0% | |
| TGAGATGCTAAAAAGGATTC+AGG | + | tig0024501:15517-15536 | Msa1417580:intron | 35.0% | |
| AGAAAATAAATACTACCGCG+GGG | + | tig0024501:15836-15855 | Msa1417580:three_prime_UTR | 35.0% | |
| GTGAACCTTCGAAACTATAT+GGG | - | tig0024501:15895-15914 | None:intergenic | 35.0% | |
| AGTGAACCTTCGAAACTATA+TGG | - | tig0024501:15896-15915 | None:intergenic | 35.0% | |
| TTCTTTATTGTGCAGGACTT+TGG | - | tig0024501:15947-15966 | None:intergenic | 35.0% | |
| ATATATCATTCAAGGGTTGG+TGG | + | tig0024501:16114-16133 | Msa1417580:three_prime_UTR | 35.0% | |
| ! | TGATTTTCGACGGACAACAA+GGG | - | tig0024501:12812-12831 | None:intergenic | 40.0% |
| AACACAACACACGATGACTT+TGG | - | tig0024501:12866-12885 | None:intergenic | 40.0% | |
| ATGCTGTGTCTTACAAGCAT+AGG | + | tig0024501:13012-13031 | Msa1417580:CDS | 40.0% | |
| TGCTGTGTCTTACAAGCATA+GGG | + | tig0024501:13013-13032 | Msa1417580:CDS | 40.0% | |
| ! | TCTCTGAAAACGGACATATC+AGG | - | tig0024501:13044-13063 | None:intergenic | 40.0% |
| ! | GATTTAGGGTTAGGGTTAGA+GGG | - | tig0024501:13095-13114 | None:intergenic | 40.0% |
| !! | GGGGTTTGGTAATGGATTTA+GGG | - | tig0024501:13109-13128 | None:intergenic | 40.0% |
| !! | AGGGGTTTGGTAATGGATTT+AGG | - | tig0024501:13110-13129 | None:intergenic | 40.0% |
| ! | CCAGAGAATTTGTCAAGTTG+GGG | - | tig0024501:13143-13162 | None:intergenic | 40.0% |
| GACCAGAGAATTTGTCAAGT+TGG | - | tig0024501:13145-13164 | None:intergenic | 40.0% | |
| GTGAATGGAGATTCTTTCTC+TGG | + | tig0024501:13348-13367 | Msa1417580:CDS | 40.0% | |
| ! | GAGATTCTTTCTCTGGAAGT+TGG | + | tig0024501:13355-13374 | Msa1417580:CDS | 40.0% |
| ! | TGTTGGAGTGTTAACTGAGA+AGG | + | tig0024501:13383-13402 | Msa1417580:CDS | 40.0% |
| ! | GTTGGAGTGTTAACTGAGAA+GGG | + | tig0024501:13384-13403 | Msa1417580:CDS | 40.0% |
| ! | TTGGAGTGTTAACTGAGAAG+GGG | + | tig0024501:13385-13404 | Msa1417580:CDS | 40.0% |
| ATGGGAAGAGCTATTGCATA+TGG | + | tig0024501:13427-13446 | Msa1417580:CDS | 40.0% | |
| AATATACCTTGGCATCCTTG+CGG | - | tig0024501:13566-13585 | None:intergenic | 40.0% | |
| AGAGGCGATGGTTGAAAAAA+TGG | - | tig0024501:13604-13623 | None:intergenic | 40.0% | |
| AAAAGAGATTTCAGAGGCGA+TGG | - | tig0024501:13616-13635 | None:intergenic | 40.0% | |
| !! | CTCTTGCTTTTGAAGGGTAA+TGG | + | tig0024501:13641-13660 | Msa1417580:intron | 40.0% |
| AGGTGCCCATCTTCATAATT+TGG | - | tig0024501:13694-13713 | None:intergenic | 40.0% | |
| GTTGATTACGGAGTTTGCAA+AGG | + | tig0024501:13716-13735 | Msa1417580:CDS | 40.0% | |
| ATTTGTCACCACAATGTGAC+AGG | - | tig0024501:14054-14073 | None:intergenic | 40.0% | |
| ATTGCGACCAAGCTATTGAA+TGG | - | tig0024501:14122-14141 | None:intergenic | 40.0% | |
| ! | GAGCAGTATCAGCTTTAACA+TGG | + | tig0024501:14173-14192 | Msa1417580:intron | 40.0% |
| GCATAACAAGAAACCTAGCA+TGG | - | tig0024501:14212-14231 | None:intergenic | 40.0% | |
| !! | TATGGCGTGCTCTGAAAAAA+TGG | - | tig0024501:14234-14253 | None:intergenic | 40.0% |
| TAAAGTTTGAGGGGTAACCT+TGG | + | tig0024501:14426-14445 | Msa1417580:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAAAG+AGG | + | tig0024501:14506-14525 | Msa1417580:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAAGA+GGG | + | tig0024501:14507-14526 | Msa1417580:intron | 40.0% | |
| GCATACAATACACCAAATGG+TGG | + | tig0024501:14537-14556 | Msa1417580:intron | 40.0% | |
| !! | CTTTGTTATTTCAGGCGTCA+AGG | + | tig0024501:14777-14796 | Msa1417580:intron | 40.0% |
| ACTGTACGAACTGAACTCAA+GGG | + | tig0024501:14932-14951 | Msa1417580:CDS | 40.0% | |
| ATCTGTGGATGGTATCAGAA+AGG | + | tig0024501:15173-15192 | Msa1417580:CDS | 40.0% | |
| !! | ATGGTATCAGAAAGGCATTG+AGG | + | tig0024501:15181-15200 | Msa1417580:CDS | 40.0% |
| TTGCAGAGAAAGAACTCAAG+TGG | - | tig0024501:15235-15254 | None:intergenic | 40.0% | |
| !!! | TGTTACTTTTCCTGCATTGC+TGG | - | tig0024501:15281-15300 | None:intergenic | 40.0% |
| !! | AGCTGACTTTTACCCCTTTA+CGG | + | tig0024501:15410-15429 | Msa1417580:intron | 40.0% |
| TTCCTGTAAACAGCCGTAAA+GGG | - | tig0024501:15426-15445 | None:intergenic | 40.0% | |
| TTTCCTGTAAACAGCCGTAA+AGG | - | tig0024501:15427-15446 | None:intergenic | 40.0% | |
| GAAGAGGTGAGATGCTAAAA+AGG | + | tig0024501:15510-15529 | Msa1417580:intron | 40.0% | |
| CTTATGCATGTGTCCATTAG+AGG | + | tig0024501:15556-15575 | Msa1417580:intron | 40.0% | |
| TGTCATAAGAAACCAGCAGT+TGG | + | tig0024501:15649-15668 | Msa1417580:CDS | 40.0% | |
| ! | CTCTTTTAACATCCAACTGC+TGG | - | tig0024501:15664-15683 | None:intergenic | 40.0% |
| ! | GATAAAGCCACAAAGAGTAC+AGG | + | tig0024501:15710-15729 | Msa1417580:CDS | 40.0% |
| AGATCTTATTAGTTCGGACG+AGG | + | tig0024501:15748-15767 | Msa1417580:CDS | 40.0% | |
| TAGTGCCCATATAGTTTCGA+AGG | + | tig0024501:15887-15906 | Msa1417580:three_prime_UTR | 40.0% | |
| ! | CTGATTTTCGACGGACAACA+AGG | - | tig0024501:12813-12832 | None:intergenic | 45.0% |
| TCGTCATCATCAGCATCAAG+CGG | - | tig0024501:12993-13012 | None:intergenic | 45.0% | |
| ! | TTGAACGGCGTCTCTGAAAA+CGG | - | tig0024501:13054-13073 | None:intergenic | 45.0% |
| ! | GGATTTAGGGTTAGGGTTAG+AGG | - | tig0024501:13096-13115 | None:intergenic | 45.0% |
| !! | TTTGTCAAGTTGGGGATCGT+CGG | - | tig0024501:13135-13154 | None:intergenic | 45.0% |
| CCCCAACTTGACAAATTCTC+TGG | + | tig0024501:13140-13159 | Msa1417580:CDS | 45.0% | |
| AGCAGGGGTTAAACATTGGT+TGG | - | tig0024501:13177-13196 | None:intergenic | 45.0% | |
| TTTAACCCCTGCTGAGCTTA+GGG | + | tig0024501:13184-13203 | Msa1417580:CDS | 45.0% | |
| TCAGAGGAACTGTCAAGAGA+AGG | + | tig0024501:13506-13525 | Msa1417580:CDS | 45.0% | |
| AGGAACTGTCAAGAGAAGGA+AGG | + | tig0024501:13510-13529 | Msa1417580:CDS | 45.0% | |
| CTTCAATTCTACTGTCCGCA+AGG | + | tig0024501:13548-13567 | Msa1417580:CDS | 45.0% | |
| ! | ATGGGCACCTCTGTTGATTA+CGG | + | tig0024501:13704-13723 | Msa1417580:CDS | 45.0% |
| GCAAACTCCGTAATCAACAG+AGG | - | tig0024501:13714-13733 | None:intergenic | 45.0% | |
| GTGTGGAATTGGACACTAGT+TGG | + | tig0024501:13993-14012 | Msa1417580:intron | 45.0% | |
| GCATTTGTCCTGTCACATTG+TGG | + | tig0024501:14043-14062 | Msa1417580:intron | 45.0% | |
| AACAAGAAACCTAGCATGGC+AGG | - | tig0024501:14208-14227 | None:intergenic | 45.0% | |
| GTTGTTGTCATGTGACTGGA+AGG | + | tig0024501:14462-14481 | Msa1417580:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | tig0024501:14502-14521 | None:intergenic | 45.0% |
| CTTGAGTTCAGTTCGTACAG+TGG | - | tig0024501:14933-14952 | None:intergenic | 45.0% | |
| CACTGTACGAACTGAACTCA+AGG | + | tig0024501:14931-14950 | Msa1417580:CDS | 45.0% | |
| TACGAACTGAACTCAAGGGA+GGG | + | tig0024501:14936-14955 | Msa1417580:CDS | 45.0% | |
| !!! | AAGTTTGTTTTGTCGGCGAG+GGG | - | tig0024501:15126-15145 | None:intergenic | 45.0% |
| !!! | CAAGTTTGTTTTGTCGGCGA+GGG | - | tig0024501:15127-15146 | None:intergenic | 45.0% |
| !!! | TCAAGTTTGTTTTGTCGGCG+AGG | - | tig0024501:15128-15147 | None:intergenic | 45.0% |
| TCCTGTAAACAGCCGTAAAG+GGG | - | tig0024501:15425-15444 | None:intergenic | 45.0% | |
| AAAGCAAATGCACAGCGAAG+AGG | + | tig0024501:15494-15513 | Msa1417580:CDS | 45.0% | |
| CAGGTGTGTTAAGCCTCTAA+TGG | - | tig0024501:15572-15591 | None:intergenic | 45.0% | |
| AGAGTAAAGACAGAGAGGCA+AGG | + | tig0024501:15680-15699 | Msa1417580:CDS | 45.0% | |
| AAAGACAGAGAGGCAAGGTT+TGG | + | tig0024501:15685-15704 | Msa1417580:CDS | 45.0% | |
| CATCTTGCCTGTACTCTTTG+TGG | - | tig0024501:15720-15739 | None:intergenic | 45.0% | |
| AAATAAATACTACCGCGGGG+TGG | + | tig0024501:15839-15858 | Msa1417580:three_prime_UTR | 45.0% | |
| ! | TAATTTTTACCACCACCCCG+CGG | - | tig0024501:15854-15873 | None:intergenic | 45.0% |
| TTTCGACGGACAACAAGGGA+GGG | - | tig0024501:12808-12827 | None:intergenic | 50.0% | |
| ! | TTTTCGACGGACAACAAGGG+AGG | - | tig0024501:12809-12828 | None:intergenic | 50.0% |
| GTCGTCAAACCACGAAGATC+TGG | + | tig0024501:12911-12930 | Msa1417580:CDS | 50.0% | |
| CTCTGTCGTGAAGAGAAAGC+AGG | - | tig0024501:12941-12960 | None:intergenic | 50.0% | |
| ATCAAGCGGAGAAGGAGAAG+CGG | - | tig0024501:12979-12998 | None:intergenic | 50.0% | |
| TCATCAGCATCAAGCGGAGA+AGG | - | tig0024501:12987-13006 | None:intergenic | 50.0% | |
| AGGGTTAGGGTTAGAGGGTT+GGG | - | tig0024501:13090-13109 | None:intergenic | 50.0% | |
| TAGGGTTAGGGTTAGAGGGT+TGG | - | tig0024501:13091-13110 | None:intergenic | 50.0% | |
| GCTCAGCAGGGGTTAAACAT+TGG | - | tig0024501:13181-13200 | None:intergenic | 50.0% | |
| GTTTAACCCCTGCTGAGCTT+AGG | + | tig0024501:13183-13202 | Msa1417580:CDS | 50.0% | |
| AGATTCCCTAAGCTCAGCAG+GGG | - | tig0024501:13192-13211 | None:intergenic | 50.0% | |
| CAGATTCCCTAAGCTCAGCA+GGG | - | tig0024501:13193-13212 | None:intergenic | 50.0% | |
| ACAGATTCCCTAAGCTCAGC+AGG | - | tig0024501:13194-13213 | None:intergenic | 50.0% | |
| TCTGGAAGTTGGGTCACTGT+TGG | + | tig0024501:13366-13385 | Msa1417580:CDS | 50.0% | |
| TGCAAAGGGAAAAGAGCCGA+TGG | + | tig0024501:13731-13750 | Msa1417580:CDS | 50.0% | |
| GCAAAGGGAAAAGAGCCGAT+GGG | + | tig0024501:13732-13751 | Msa1417580:CDS | 50.0% | |
| CAGTGTACAAGCCATCCCAT+CGG | - | tig0024501:13750-13769 | None:intergenic | 50.0% | |
| ATACATGTGCCTGCCATGCT+AGG | + | tig0024501:14196-14215 | Msa1417580:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | tig0024501:14446-14465 | None:intergenic | 50.0% | |
| GTCATGTGACTGGAAGGTCA+CGG | + | tig0024501:14468-14487 | Msa1417580:intron | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | + | tig0024501:14469-14488 | Msa1417580:intron | 50.0% | |
| GTACGAACTGAACTCAAGGG+AGG | + | tig0024501:14935-14954 | Msa1417580:CDS | 50.0% | |
| !!! | AGTTTGTTTTGTCGGCGAGG+GGG | - | tig0024501:15125-15144 | None:intergenic | 50.0% |
| ACAACAGCTTCACACTCGCA+AGG | + | tig0024501:15298-15317 | Msa1417580:CDS | 50.0% | |
| CAACAGCTTCACACTCGCAA+GGG | + | tig0024501:15299-15318 | Msa1417580:CDS | 50.0% | |
| ACCCCTTTACGGCTGTTTAC+AGG | + | tig0024501:15421-15440 | Msa1417580:intron | 50.0% | |
| GCAGGAGATCCAGATCTTCG+TGG | - | tig0024501:12923-12942 | None:intergenic | 55.0% | |
| TCAAGCGGAGAAGGAGAAGC+GGG | - | tig0024501:12978-12997 | None:intergenic | 55.0% | |
| ! | GTCGGTGAGGGGTTTGGTAA+TGG | - | tig0024501:13117-13136 | None:intergenic | 55.0% |
| AAGTTGGGGATCGTCGGTGA+GGG | - | tig0024501:13129-13148 | None:intergenic | 55.0% | |
| TACTGTCCGCAAGGATGCCA+AGG | + | tig0024501:13557-13576 | Msa1417580:CDS | 55.0% | |
| AGGGAAAAGAGCCGATGGGA+TGG | + | tig0024501:13736-13755 | Msa1417580:CDS | 55.0% | |
| ! | CGATGGGATGGCTTGTACAC+TGG | + | tig0024501:13748-13767 | Msa1417580:CDS | 55.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | + | tig0024501:14481-14500 | Msa1417580:intron | 55.0% | |
| ! | CAAATGGTGGGACCCCTTCT+CGG | + | tig0024501:14550-14569 | Msa1417580:intron | 55.0% |
| CTAAAGCTCCCGCATACGCA+GGG | - | tig0024501:14577-14596 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | tig0024501:14578-14597 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | tig0024501:14582-14601 | Msa1417580:intron | 55.0% |
| TAAATACTACCGCGGGGTGG+TGG | + | tig0024501:15842-15861 | Msa1417580:three_prime_UTR | 55.0% | |
| AGTTGGGGATCGTCGGTGAG+GGG | - | tig0024501:13128-13147 | None:intergenic | 60.0% | |
| ! | CAAGTTGGGGATCGTCGGTG+AGG | - | tig0024501:13130-13149 | None:intergenic | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | tig0024501:14435-14454 | Msa1417580:intron | 60.0% | |
| CGAGAAGGGGTCCCACCATT+TGG | - | tig0024501:14552-14571 | None:intergenic | 60.0% | |
| CATACGCAGGGTCCGAGAAG+GGG | - | tig0024501:14565-14584 | None:intergenic | 60.0% | |
| GCATACGCAGGGTCCGAGAA+GGG | - | tig0024501:14566-14585 | None:intergenic | 60.0% | |
| CTTCTCGGACCCTGCGTATG+CGG | + | tig0024501:14565-14584 | Msa1417580:intron | 60.0% | |
| TTCTCGGACCCTGCGTATGC+GGG | + | tig0024501:14566-14585 | Msa1417580:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | tig0024501:14583-14602 | Msa1417580:intron | 60.0% |
| GGAGAAGCGGGAGGGGTTTC+AGG | - | tig0024501:12966-12985 | None:intergenic | 65.0% | |
| CGGAGAAGGAGAAGCGGGAG+GGG | - | tig0024501:12973-12992 | None:intergenic | 65.0% | |
| GCGGAGAAGGAGAAGCGGGA+GGG | - | tig0024501:12974-12993 | None:intergenic | 65.0% | |
| AGCGGAGAAGGAGAAGCGGG+AGG | - | tig0024501:12975-12994 | None:intergenic | 65.0% | |
| GGGATCGTCGGTGAGGGGTT+TGG | - | tig0024501:13123-13142 | None:intergenic | 65.0% | |
| CGCATACGCAGGGTCCGAGA+AGG | - | tig0024501:14567-14586 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024501 | gene | 12796 | 16218 | 12796 | ID=Msa1417580;Name=Msa1417580 |
| tig0024501 | mRNA | 12796 | 16218 | 12796 | ID=Msa1417580-mRNA-1;Parent=Msa1417580;Name=Msa1417580-mRNA-1;_AED=0.09;_eAED=0.09;_QI=113|0.85|0.87|1|1|1|8|440|410 |
| tig0024501 | exon | 12796 | 13249 | 12796 | ID=Msa1417580-mRNA-1:exon:23563;Parent=Msa1417580-mRNA-1 |
| tig0024501 | exon | 13341 | 13578 | 13341 | ID=Msa1417580-mRNA-1:exon:23564;Parent=Msa1417580-mRNA-1 |
| tig0024501 | exon | 13656 | 13780 | 13656 | ID=Msa1417580-mRNA-1:exon:23565;Parent=Msa1417580-mRNA-1 |
| tig0024501 | exon | 14874 | 14957 | 14874 | ID=Msa1417580-mRNA-1:exon:23566;Parent=Msa1417580-mRNA-1 |
| tig0024501 | exon | 15059 | 15202 | 15059 | ID=Msa1417580-mRNA-1:exon:23567;Parent=Msa1417580-mRNA-1 |
| tig0024501 | exon | 15282 | 15346 | 15282 | ID=Msa1417580-mRNA-1:exon:23568;Parent=Msa1417580-mRNA-1 |
| tig0024501 | exon | 15443 | 15515 | 15443 | ID=Msa1417580-mRNA-1:exon:23569;Parent=Msa1417580-mRNA-1 |
| tig0024501 | exon | 15616 | 16218 | 15616 | ID=Msa1417580-mRNA-1:exon:23570;Parent=Msa1417580-mRNA-1 |
| tig0024501 | five_prime_UTR | 12796 | 12908 | 12796 | ID=Msa1417580-mRNA-1:five_prime_utr;Parent=Msa1417580-mRNA-1 |
| tig0024501 | CDS | 12909 | 13249 | 12909 | ID=Msa1417580-mRNA-1:cds;Parent=Msa1417580-mRNA-1 |
| tig0024501 | CDS | 13341 | 13578 | 13341 | ID=Msa1417580-mRNA-1:cds;Parent=Msa1417580-mRNA-1 |
| tig0024501 | CDS | 13656 | 13780 | 13656 | ID=Msa1417580-mRNA-1:cds;Parent=Msa1417580-mRNA-1 |
| tig0024501 | CDS | 14874 | 14957 | 14874 | ID=Msa1417580-mRNA-1:cds;Parent=Msa1417580-mRNA-1 |
| tig0024501 | CDS | 15059 | 15202 | 15059 | ID=Msa1417580-mRNA-1:cds;Parent=Msa1417580-mRNA-1 |
| tig0024501 | CDS | 15282 | 15346 | 15282 | ID=Msa1417580-mRNA-1:cds;Parent=Msa1417580-mRNA-1 |
| tig0024501 | CDS | 15443 | 15515 | 15443 | ID=Msa1417580-mRNA-1:cds;Parent=Msa1417580-mRNA-1 |
| tig0024501 | CDS | 15616 | 15778 | 15616 | ID=Msa1417580-mRNA-1:cds;Parent=Msa1417580-mRNA-1 |
| tig0024501 | three_prime_UTR | 15779 | 16218 | 15779 | ID=Msa1417580-mRNA-1:three_prime_utr;Parent=Msa1417580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
