Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524280 | XP_003604042.1 | 92.512 | 414 | 25 | 4 | 1 | 410 | 1 | 412 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524280 | sp|Q5EAW4|MCM10_XENLA | 30.049 | 203 | 137 | 4 | 63 | 261 | 221 | 422 | 2.19e-25 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524280 | G7J8I4 | 92.512 | 414 | 25 | 4 | 1 | 410 | 1 | 412 | 0.0 | 751 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0159590 | Msa0524280 | 0.810949 | 8.937949e-51 | -8.615850e-47 |
| Msa0159620 | Msa0524280 | 0.809912 | 1.496818e-50 | -8.615850e-47 |
| Msa0367150 | Msa0524280 | 0.810080 | 1.376736e-50 | -8.615850e-47 |
| Msa0373500 | Msa0524280 | 0.832754 | 7.892569e-56 | -8.615850e-47 |
| Msa0414880 | Msa0524280 | 0.821885 | 3.182850e-53 | -8.615850e-47 |
| Msa0454560 | Msa0524280 | 0.852974 | 3.245827e-61 | -8.615850e-47 |
| Msa0459740 | Msa0524280 | 0.823321 | 1.475399e-53 | -8.615850e-47 |
| Msa0462780 | Msa0524280 | 0.812555 | 3.997008e-51 | -8.615850e-47 |
| Msa0468620 | Msa0524280 | 0.820418 | 6.930580e-53 | -8.615850e-47 |
| Msa0481890 | Msa0524280 | 0.826215 | 3.064752e-54 | -8.615850e-47 |
| Msa0269210 | Msa0524280 | 0.807858 | 4.115461e-50 | -8.615850e-47 |
| Msa0502510 | Msa0524280 | 0.845729 | 3.387489e-59 | -8.615850e-47 |
| Msa0514500 | Msa0524280 | 0.821034 | 5.002590e-53 | -8.615850e-47 |
| Msa0524280 | Msa0524390 | 0.982011 | 5.236721e-154 | -8.615850e-47 |
| Msa0524280 | Msa0545920 | 0.813298 | 2.747177e-51 | -8.615850e-47 |
| Msa0524280 | Msa0601720 | 0.813801 | 2.129870e-51 | -8.615850e-47 |
| Msa0524280 | Msa0641990 | 0.814336 | 1.622929e-51 | -8.615850e-47 |
| Msa0524280 | Msa0659370 | 0.800780 | 1.227415e-48 | -8.615850e-47 |
| Msa0524280 | Msa0681050 | 0.818968 | 1.485668e-52 | -8.615850e-47 |
| Msa0524280 | Msa0709440 | 0.826025 | 3.401631e-54 | -8.615850e-47 |
| Msa0524280 | Msa0720520 | 0.811217 | 7.820082e-51 | -8.615850e-47 |
| Msa0524280 | Msa0803350 | 0.830129 | 3.495004e-55 | -8.615850e-47 |
| Msa0524280 | Msa0888790 | 0.827818 | 1.267946e-54 | -8.615850e-47 |
| Msa0524280 | Msa1084530 | 0.820716 | 5.921292e-53 | -8.615850e-47 |
| Msa0524280 | Msa1125820 | 0.822984 | 1.768120e-53 | -8.615850e-47 |
| Msa0524280 | Msa1125990 | 0.821237 | 4.493510e-53 | -8.615850e-47 |
| Msa0524280 | Msa1171290 | 0.826535 | 2.571721e-54 | -8.615850e-47 |
| Msa0524280 | Msa1183740 | 0.805404 | 1.357048e-49 | -8.615850e-47 |
| Msa0524280 | Msa1192570 | 0.802118 | 6.528189e-49 | -8.615850e-47 |
| Msa0524280 | Msa1218820 | 0.820787 | 5.703810e-53 | -8.615850e-47 |
| Msa0524280 | Msa1364950 | 0.962928 | 1.827610e-121 | -8.615850e-47 |
| Msa0524280 | Msa1387440 | 0.815446 | 9.208450e-52 | -8.615850e-47 |
| Msa0524280 | Msa1417580 | 0.899498 | 1.868045e-77 | -8.615850e-47 |
| Msa0524280 | Msa1429070 | 0.804103 | 2.536955e-49 | -8.615850e-47 |
| Msa0524280 | Msa1435530 | 0.945173 | 5.004682e-104 | -8.615850e-47 |
| Msa0524280 | Msa1465360 | 0.838373 | 2.988708e-57 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524280 | MtrunA17_Chr3g0145611 | 92.512 | 414 | 25 | 4 | 1 | 410 | 1 | 412 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524280 | AT2G20980.1 | 50.620 | 403 | 166 | 9 | 17 | 409 | 17 | 396 | 4.03e-116 | 344 |
Find 136 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGATCATTTGGAGTCTT+TGG | 0.125778 | 3_4:+77770774 | None:intergenic |
| GGAGAAGCGGGAGGGGTTTC+AGG | 0.144299 | 3_4:+77773281 | None:intergenic |
| AGGGGTTTGGTAATGGATTT+AGG | 0.166281 | 3_4:+77773137 | None:intergenic |
| GAAATCATCTTCTGTTAATA+TGG | 0.187113 | 3_4:-77770633 | Msa0524280:CDS |
| AGGTGCCCATCTTCATAATT+TGG | 0.237873 | 3_4:+77772558 | None:intergenic |
| TGCTTTCTGCCATAAGTTAT+AGG | 0.239694 | 3_4:+77771355 | None:intergenic |
| TTGGTAATGGATTTAGGGTT+AGG | 0.247428 | 3_4:+77773143 | None:intergenic |
| AGTGAACCTTCGAAACTATA+TGG | 0.258865 | 3_4:+77770356 | None:intergenic |
| CATATGGAAAATTGGTTCTT+TGG | 0.260862 | 3_4:-77772807 | Msa0524280:CDS |
| TTTATTTCTCTTAGTTATAT+TGG | 0.272528 | 3_4:-77770282 | Msa0524280:three_prime_UTR |
| AGCTATTGCATATGGAAAAT+TGG | 0.275020 | 3_4:-77772815 | Msa0524280:CDS |
| CATCTTGCCTGTACTCTTTG+TGG | 0.306180 | 3_4:+77770532 | None:intergenic |
| GTAGATAACCTAGTAAAATT+TGG | 0.307826 | 3_4:+77770248 | None:intergenic |
| GAAACTTAAGAACAGCATTT+AGG | 0.310137 | 3_4:-77771191 | Msa0524280:CDS |
| GGATTTAGGGTTAGGGTTAG+AGG | 0.317608 | 3_4:+77773151 | None:intergenic |
| CTCTTAGTTATATTGGTAGT+AGG | 0.320201 | 3_4:-77770275 | Msa0524280:three_prime_UTR |
| GTGCATTTGCTTTGATCATT+TGG | 0.328321 | 3_4:+77770765 | None:intergenic |
| ACCAGAGAATTTGTCAAGTT+GGG | 0.333949 | 3_4:+77773103 | None:intergenic |
| TCTGTGTATATTCAGGAATT+TGG | 0.341989 | 3_4:-77772924 | Msa0524280:intron |
| CCCATCTTCATAATTTGGTT+AGG | 0.353508 | 3_4:+77772563 | None:intergenic |
| AGATTTCTTTCTGAGATTGC+AGG | 0.358419 | 3_4:-77770924 | Msa0524280:intron |
| GGGGTTTGGTAATGGATTTA+GGG | 0.358994 | 3_4:+77773138 | None:intergenic |
| ATCCACTAACCTATAACTTA+TGG | 0.367477 | 3_4:-77771364 | Msa0524280:CDS |
| AGGGTTAGGGTTAGAGGGTT+GGG | 0.369684 | 3_4:+77773157 | None:intergenic |
| GTGTATCAAAGAAAAGAAAA+AGG | 0.374356 | 3_4:-77773358 | Msa0524280:five_prime_UTR |
| GGGATCGTCGGTGAGGGGTT+TGG | 0.378542 | 3_4:+77773124 | None:intergenic |
| ATTCAGAAAACAAGTTCAAA+TGG | 0.379635 | 3_4:-77772842 | Msa0524280:CDS |
| AACTTATTATTTAAAACAGT+TGG | 0.380158 | 3_4:-77770107 | Msa0524280:three_prime_UTR |
| TGCCATAAGTTATAGGTTAG+TGG | 0.382941 | 3_4:+77771362 | None:intergenic |
| TTCTTTATTGTGCAGGACTT+TGG | 0.384179 | 3_4:+77770305 | None:intergenic |
| GTGAATGGAGATTCTTTCTC+TGG | 0.384793 | 3_4:-77772902 | Msa0524280:CDS |
| GTCGGTGAGGGGTTTGGTAA+TGG | 0.386273 | 3_4:+77773130 | None:intergenic |
| GAGATTCTTTCTCTGGAAGT+TGG | 0.388819 | 3_4:-77772895 | Msa0524280:CDS |
| TATCTACATTGTTATCAGTT+GGG | 0.389092 | 3_4:-77770232 | Msa0524280:three_prime_UTR |
| TGAATTAGATCTTATTAGTT+CGG | 0.393103 | 3_4:-77770507 | Msa0524280:CDS |
| GACCAGAGAATTTGTCAAGT+TGG | 0.402451 | 3_4:+77773102 | None:intergenic |
| GTCGTCAAACCACGAAGATC+TGG | 0.403762 | 3_4:-77773333 | Msa0524280:CDS |
| GTTTAACCCCTGCTGAGCTT+AGG | 0.407094 | 3_4:-77773061 | Msa0524280:CDS |
| GTCAATGAATATATCATTCA+AGG | 0.409842 | 3_4:-77770143 | Msa0524280:three_prime_UTR |
| CCATCTTCATAATTTGGTTA+GGG | 0.413959 | 3_4:+77772564 | None:intergenic |
| TCTGGAAGTTGGGTCACTGT+TGG | 0.427782 | 3_4:-77772884 | Msa0524280:CDS |
| TTTAACCCCTGCTGAGCTTA+GGG | 0.429241 | 3_4:-77773060 | Msa0524280:CDS |
| TTGAACGGCGTCTCTGAAAA+CGG | 0.430849 | 3_4:+77773193 | None:intergenic |
| AAATAAATTCTTTATTGTGC+AGG | 0.432010 | 3_4:+77770298 | None:intergenic |
| AGATTCTTTCTCTGGAAGTT+GGG | 0.432795 | 3_4:-77772894 | Msa0524280:CDS |
| AAAGACAGAGAGGCAAGGTT+TGG | 0.444726 | 3_4:-77770564 | Msa0524280:CDS |
| GATTTAGGGTTAGGGTTAGA+GGG | 0.445132 | 3_4:+77773152 | None:intergenic |
| TAGGGTTAGGGTTAGAGGGT+TGG | 0.445470 | 3_4:+77773156 | None:intergenic |
| CGATGGGATGGCTTGTACAC+TGG | 0.447414 | 3_4:-77772501 | Msa0524280:CDS |
| TGGTAATGGATTTAGGGTTA+GGG | 0.451006 | 3_4:+77773144 | None:intergenic |
| CCCTAACCAAATTATGAAGA+TGG | 0.457187 | 3_4:-77772564 | Msa0524280:CDS |
| ATGGGAAGAGCTATTGCATA+TGG | 0.459558 | 3_4:-77772823 | Msa0524280:CDS |
| CCCCAACTTGACAAATTCTC+TGG | 0.465454 | 3_4:-77773104 | Msa0524280:CDS |
| CGGAGAAGGAGAAGCGGGAG+GGG | 0.466441 | 3_4:+77773274 | None:intergenic |
| AAGTTGGGGATCGTCGGTGA+GGG | 0.467511 | 3_4:+77773118 | None:intergenic |
| TCTTAGTTATATTGGTAGTA+GGG | 0.467662 | 3_4:-77770274 | Msa0524280:three_prime_UTR |
| AAATCATCTTCTGTTAATAT+GGG | 0.469854 | 3_4:-77770632 | Msa0524280:CDS |
| ATGGGCACCTCTGTTGATTA+CGG | 0.470419 | 3_4:-77772545 | Msa0524280:CDS |
| AACACAACACACGATGACTT+TGG | 0.476542 | 3_4:+77773381 | None:intergenic |
| ACAGATTCCCTAAGCTCAGC+AGG | 0.478207 | 3_4:+77773053 | None:intergenic |
| ATCTACATTGTTATCAGTTG+GGG | 0.484820 | 3_4:-77770231 | Msa0524280:three_prime_UTR |
| TCTCTGAAAACGGACATATC+AGG | 0.488594 | 3_4:+77773203 | None:intergenic |
| ATCAAGCGGAGAAGGAGAAG+CGG | 0.493496 | 3_4:+77773268 | None:intergenic |
| TGAATATATCATTCAAGGGT+TGG | 0.494428 | 3_4:-77770138 | Msa0524280:three_prime_UTR |
| TTATCTACATTGTTATCAGT+TGG | 0.496099 | 3_4:-77770233 | Msa0524280:three_prime_UTR |
| TCAAGCGGAGAAGGAGAAGC+GGG | 0.501964 | 3_4:+77773269 | None:intergenic |
| TTCAGAAAACAAGTTCAAAT+GGG | 0.504697 | 3_4:-77772841 | Msa0524280:CDS |
| GCGGAGAAGGAGAAGCGGGA+GGG | 0.505756 | 3_4:+77773273 | None:intergenic |
| TTGATTACGGAGTTTGCAAA+GGG | 0.522380 | 3_4:-77772532 | Msa0524280:CDS |
| TCTGACTTGAGATAATCTCT+TGG | 0.522461 | 3_4:+77771168 | None:intergenic |
| ATATTCAGGAATTTGGTGAA+TGG | 0.526400 | 3_4:-77772917 | Msa0524280:intron |
| AGCAGGGGTTAAACATTGGT+TGG | 0.526618 | 3_4:+77773070 | None:intergenic |
| GAAGAAGAATACTTAATGAC+GGG | 0.529158 | 3_4:+77773005 | None:intergenic |
| GTGAACCTTCGAAACTATAT+GGG | 0.530499 | 3_4:+77770357 | None:intergenic |
| TAGTGCCCATATAGTTTCGA+AGG | 0.533679 | 3_4:-77770362 | Msa0524280:three_prime_UTR |
| TGCTGTGTCTTACAAGCATA+GGG | 0.539214 | 3_4:-77773231 | Msa0524280:CDS |
| CACTGTACGAACTGAACTCA+AGG | 0.539230 | 3_4:-77771318 | Msa0524280:CDS |
| AAGAAAATAAATACTACCGC+GGG | 0.542071 | 3_4:-77770414 | Msa0524280:three_prime_UTR |
| ATGCTGTGTCTTACAAGCAT+AGG | 0.543398 | 3_4:-77773232 | Msa0524280:CDS |
| TACTGTCCGCAAGGATGCCA+AGG | 0.550767 | 3_4:-77772693 | Msa0524280:intron |
| TCAATGAATATATCATTCAA+GGG | 0.551217 | 3_4:-77770142 | Msa0524280:three_prime_UTR |
| GTTGGAGTGTTAACTGAGAA+GGG | 0.555349 | 3_4:-77772866 | Msa0524280:CDS |
| TCATCAGCATCAAGCGGAGA+AGG | 0.555395 | 3_4:+77773260 | None:intergenic |
| TAAATACTACCGCGGGGTGG+TGG | 0.556114 | 3_4:-77770407 | Msa0524280:three_prime_UTR |
| CCAGAGAATTTGTCAAGTTG+GGG | 0.563311 | 3_4:+77773104 | None:intergenic |
| TTTGTCAAGTTGGGGATCGT+CGG | 0.563964 | 3_4:+77773112 | None:intergenic |
| TGTTGGAGTGTTAACTGAGA+AGG | 0.564287 | 3_4:-77772867 | Msa0524280:CDS |
| GTTGATTACGGAGTTTGCAA+AGG | 0.565498 | 3_4:-77772533 | Msa0524280:CDS |
| CAAGTTGGGGATCGTCGGTG+AGG | 0.565523 | 3_4:+77773117 | None:intergenic |
| AGAAGAAGAATACTTAATGA+CGG | 0.565529 | 3_4:+77773004 | None:intergenic |
| AGTTGGGGATCGTCGGTGAG+GGG | 0.571103 | 3_4:+77773119 | None:intergenic |
| CATCTTCATAATTTGGTTAG+GGG | 0.573813 | 3_4:+77772565 | None:intergenic |
| GATAAAGCCACAAAGAGTAC+AGG | 0.574304 | 3_4:-77770539 | Msa0524280:CDS |
| CTCTGTCGTGAAGAGAAAGC+AGG | 0.575382 | 3_4:+77773306 | None:intergenic |
| CCTAACCAAATTATGAAGAT+GGG | 0.576980 | 3_4:-77772563 | Msa0524280:CDS |
| GCAGGAGATCCAGATCTTCG+TGG | 0.577212 | 3_4:+77773324 | None:intergenic |
| TCAGAGGAACTGTCAAGAGA+AGG | 0.578844 | 3_4:-77772744 | Msa0524280:CDS |
| TGCAAAGGGAAAAGAGCCGA+TGG | 0.578899 | 3_4:-77772518 | Msa0524280:CDS |
| ATCTGTGGATGGTATCAGAA+AGG | 0.579951 | 3_4:-77771076 | Msa0524280:CDS |
| AGATCTTATTAGTTCGGACG+AGG | 0.580223 | 3_4:-77770501 | Msa0524280:CDS |
| GTGAAATTGTTATCTGTGGA+TGG | 0.582479 | 3_4:-77771087 | Msa0524280:CDS |
| AGCGGAGAAGGAGAAGCGGG+AGG | 0.584047 | 3_4:+77773272 | None:intergenic |
| TGTCATAAGAAACCAGCAGT+TGG | 0.585566 | 3_4:-77770600 | Msa0524280:CDS |
| GCTCAGCAGGGGTTAAACAT+TGG | 0.588791 | 3_4:+77773066 | None:intergenic |
| AGGGAAAAGAGCCGATGGGA+TGG | 0.594074 | 3_4:-77772513 | Msa0524280:CDS |
| AGAATTGAAGAGTGCAAAGA+CGG | 0.594442 | 3_4:+77772715 | None:intergenic |
| AGAGATTATCTCAAGTCAGA+AGG | 0.595620 | 3_4:-77771165 | Msa0524280:CDS |
| AAGAATACTTAATGACGGGT+AGG | 0.599067 | 3_4:+77773009 | None:intergenic |
| CTTGAGTTCAGTTCGTACAG+TGG | 0.599594 | 3_4:+77771319 | None:intergenic |
| GCAAGTGAAATTGTTATCTG+TGG | 0.600173 | 3_4:-77771091 | Msa0524280:CDS |
| ACAACAGCTTCACACTCGCA+AGG | 0.603557 | 3_4:-77770951 | Msa0524280:CDS |
| CTTCAATTCTACTGTCCGCA+AGG | 0.606230 | 3_4:-77772702 | Msa0524280:CDS |
| TGTTTGGTAATGCTTATCAG+AGG | 0.614875 | 3_4:-77772760 | Msa0524280:CDS |
| CAACAGCTTCACACTCGCAA+GGG | 0.617797 | 3_4:-77770950 | Msa0524280:CDS |
| TTTCGACGGACAACAAGGGA+GGG | 0.619606 | 3_4:+77773439 | None:intergenic |
| ATATATCATTCAAGGGTTGG+TGG | 0.622516 | 3_4:-77770135 | Msa0524280:three_prime_UTR |
| AGGAACTGTCAAGAGAAGGA+AGG | 0.627697 | 3_4:-77772740 | Msa0524280:CDS |
| AAAGCAAATGCACAGCGAAG+AGG | 0.629693 | 3_4:-77770755 | Msa0524280:intron |
| TTGGAGTGTTAACTGAGAAG+GGG | 0.630678 | 3_4:-77772865 | Msa0524280:CDS |
| TACGAACTGAACTCAAGGGA+GGG | 0.632715 | 3_4:-77771313 | Msa0524280:intron |
| CAGATTCCCTAAGCTCAGCA+GGG | 0.634673 | 3_4:+77773054 | None:intergenic |
| TCGTCATCATCAGCATCAAG+CGG | 0.640174 | 3_4:+77773254 | None:intergenic |
| ATGGTATCAGAAAGGCATTG+AGG | 0.644692 | 3_4:-77771068 | Msa0524280:intron |
| CAGTGTACAAGCCATCCCAT+CGG | 0.645912 | 3_4:+77772502 | None:intergenic |
| AGAGTAAAGACAGAGAGGCA+AGG | 0.646421 | 3_4:-77770569 | Msa0524280:CDS |
| AATATACCTTGGCATCCTTG+CGG | 0.655962 | 3_4:+77772687 | None:intergenic |
| TTAAAAGAGTAAAGACAGAG+AGG | 0.656016 | 3_4:-77770574 | Msa0524280:CDS |
| GCAAAGGGAAAAGAGCCGAT+GGG | 0.669274 | 3_4:-77772517 | Msa0524280:CDS |
| GTACGAACTGAACTCAAGGG+AGG | 0.674064 | 3_4:-77771314 | Msa0524280:CDS |
| GGTATGAAGACAATCTTGAA+CGG | 0.675223 | 3_4:+77773178 | None:intergenic |
| AGATTCCCTAAGCTCAGCAG+GGG | 0.676546 | 3_4:+77773055 | None:intergenic |
| GAAGAAAATAAATACTACCG+CGG | 0.677777 | 3_4:-77770415 | Msa0524280:three_prime_UTR |
| ACTGTACGAACTGAACTCAA+GGG | 0.685568 | 3_4:-77771317 | Msa0524280:CDS |
| GCAAACTCCGTAATCAACAG+AGG | 0.699830 | 3_4:+77772538 | None:intergenic |
| AAATAAATACTACCGCGGGG+TGG | 0.707092 | 3_4:-77770410 | Msa0524280:three_prime_UTR |
| AGAAAATAAATACTACCGCG+GGG | 0.751461 | 3_4:-77770413 | Msa0524280:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATATGAAATAATTAAA+TGG | + | chr3_4:77772087-77772106 | None:intergenic | 10.0% |
| !!! | TTATTTTGATTATTTAACTG+TGG | - | chr3_4:77771058-77771077 | Msa0524280:intron | 15.0% |
| !! | TTTACGTCTATTAATAAATA+TGG | + | chr3_4:77771504-77771523 | None:intergenic | 15.0% |
| !! | CTTTACAAAAGTAATAAAAA+GGG | + | chr3_4:77771864-77771883 | None:intergenic | 15.0% |
| !! | ACTTTACAAAAGTAATAAAA+AGG | + | chr3_4:77771865-77771884 | None:intergenic | 15.0% |
| !!! | TTTATTTCTCTTAGTTATAT+TGG | - | chr3_4:77773219-77773238 | Msa0524280:CDS | 15.0% |
| !!! | AACTTATTATTTAAAACAGT+TGG | - | chr3_4:77773394-77773413 | Msa0524280:five_prime_UTR | 15.0% |
| !! | AAATAAAAAAGAGATTTCAG+AGG | + | chr3_4:77770873-77770892 | None:intergenic | 20.0% |
| !! | AAATTGCATATACAATGATT+GGG | + | chr3_4:77771124-77771143 | None:intergenic | 20.0% |
| !! | TAAATTGCATATACAATGAT+TGG | + | chr3_4:77771125-77771144 | None:intergenic | 20.0% |
| !! | TTAATAGACGTAAAACTATA+TGG | - | chr3_4:77771510-77771529 | Msa0524280:intron | 20.0% |
| !!! | AGAAAAACTAAACTTTGAAA+TGG | - | chr3_4:77771571-77771590 | Msa0524280:intron | 20.0% |
| !!! | TATTACTTTTGTAAAGTTTG+AGG | - | chr3_4:77771667-77771686 | Msa0524280:intron | 20.0% |
| !!! | ATTACTTTTGTAAAGTTTGA+GGG | - | chr3_4:77771668-77771687 | Msa0524280:intron | 20.0% |
| !!! | CTTTTATAAGAACTTGAAAT+AGG | + | chr3_4:77772224-77772243 | None:intergenic | 20.0% |
| !!! | AGACTAACTGTTAATTTTAA+TGG | - | chr3_4:77772605-77772624 | Msa0524280:intron | 20.0% |
| !! | GATAATAAATAACATGTAAC+AGG | + | chr3_4:77772843-77772862 | None:intergenic | 20.0% |
| !!! | ACATGTTATTTATTATCTTC+AGG | - | chr3_4:77772846-77772865 | Msa0524280:CDS | 20.0% |
| !! | AAATCATCTTCTGTTAATAT+GGG | - | chr3_4:77772869-77772888 | Msa0524280:CDS | 20.0% |
| !! | TGAATTAGATCTTATTAGTT+CGG | - | chr3_4:77772994-77773013 | Msa0524280:intron | 20.0% |
| !! | AAATAAATTCTTTATTGTGC+AGG | + | chr3_4:77773206-77773225 | None:intergenic | 20.0% |
| !!! | TACTTAACTTATCTTTTGAA+AGG | + | chr3_4:77773335-77773354 | None:intergenic | 20.0% |
| !! | TCAATGAATATATCATTCAA+GGG | - | chr3_4:77773359-77773378 | Msa0524280:five_prime_UTR | 20.0% |
| !!! | ACTTTGGTTAGTTTTGTTTA+GGG | + | chr3_4:77770107-77770126 | None:intergenic | 25.0% |
| ! | GTGTATCAAAGAAAAGAAAA+AGG | - | chr3_4:77770143-77770162 | Msa0524280:three_prime_UTR | 25.0% |
| ! | AGAAGAAGAATACTTAATGA+CGG | + | chr3_4:77770500-77770519 | None:intergenic | 25.0% |
| ! | ATTCAGAAAACAAGTTCAAA+TGG | - | chr3_4:77770659-77770678 | Msa0524280:intron | 25.0% |
| ! | TTCAGAAAACAAGTTCAAAT+GGG | - | chr3_4:77770660-77770679 | Msa0524280:intron | 25.0% |
| !!! | ACTATTTCTCTTTTCTTGTT+TGG | - | chr3_4:77770725-77770744 | Msa0524280:intron | 25.0% |
| !!! | TTTATTTCTCTTGCTTTTGA+AGG | - | chr3_4:77770886-77770905 | Msa0524280:intron | 25.0% |
| !!! | TTATTTCTCTTGCTTTTGAA+GGG | - | chr3_4:77770887-77770906 | Msa0524280:intron | 25.0% |
| ! | TTGTATATGCAATTTACCAA+AGG | - | chr3_4:77771129-77771148 | Msa0524280:CDS | 25.0% |
| ! | ATCAGACTTATTTCAGTAAA+TGG | + | chr3_4:77771219-77771238 | None:intergenic | 25.0% |
| ! | ATAAGTCTGATTTAAATGTG+TGG | - | chr3_4:77771228-77771247 | Msa0524280:intron | 25.0% |
| ! | GGTGACAAATAAAATAAAAG+AGG | - | chr3_4:77771316-77771335 | Msa0524280:CDS | 25.0% |
| !! | GCAATCTATAAGTCTTATAT+TGG | - | chr3_4:77771532-77771551 | Msa0524280:intron | 25.0% |
| !!! | TTACTTTTGTAAAGTTTGAG+GGG | - | chr3_4:77771669-77771688 | Msa0524280:intron | 25.0% |
| ! | AGAAACAGAATAATAATCCT+GGG | + | chr3_4:77771899-77771918 | None:intergenic | 25.0% |
| ! | TGTAAGAAGAAAAAGAAACA+TGG | + | chr3_4:77771959-77771978 | None:intergenic | 25.0% |
| ! | CCTGAAATAACAAAGATTAA+TGG | + | chr3_4:77772024-77772043 | None:intergenic | 25.0% |
| !!! | CCATTAATCTTTGTTATTTC+AGG | - | chr3_4:77772021-77772040 | Msa0524280:intron | 25.0% |
| !!! | TTTTGATTTCATATGACATG+TGG | - | chr3_4:77772256-77772275 | Msa0524280:intron | 25.0% |
| !!! | CTTTTTCAAGTTTGTTTTGT+CGG | + | chr3_4:77772385-77772404 | None:intergenic | 25.0% |
| !!! | GGTTCTTTTTTCATCATTTT+TGG | + | chr3_4:77772709-77772728 | None:intergenic | 25.0% |
| ! | GAAATCATCTTCTGTTAATA+TGG | - | chr3_4:77772868-77772887 | Msa0524280:CDS | 25.0% |
| !! | TCTTAGTTATATTGGTAGTA+GGG | - | chr3_4:77773227-77773246 | Msa0524280:CDS | 25.0% |
| ! | GTAGATAACCTAGTAAAATT+TGG | + | chr3_4:77773256-77773275 | None:intergenic | 25.0% |
| ! | TTATCTACATTGTTATCAGT+TGG | - | chr3_4:77773268-77773287 | Msa0524280:CDS | 25.0% |
| ! | TATCTACATTGTTATCAGTT+GGG | - | chr3_4:77773269-77773288 | Msa0524280:CDS | 25.0% |
| ! | GTCAATGAATATATCATTCA+AGG | - | chr3_4:77773358-77773377 | Msa0524280:five_prime_UTR | 25.0% |
| !!! | GACTTTGGTTAGTTTTGTTT+AGG | + | chr3_4:77770108-77770127 | None:intergenic | 30.0% |
| GAAGAAGAATACTTAATGAC+GGG | + | chr3_4:77770499-77770518 | None:intergenic | 30.0% | |
| TCTGTGTATATTCAGGAATT+TGG | - | chr3_4:77770577-77770596 | Msa0524280:CDS | 30.0% | |
| ! | ATATTCAGGAATTTGGTGAA+TGG | - | chr3_4:77770584-77770603 | Msa0524280:CDS | 30.0% |
| AGCTATTGCATATGGAAAAT+TGG | - | chr3_4:77770686-77770705 | Msa0524280:intron | 30.0% | |
| ! | CATATGGAAAATTGGTTCTT+TGG | - | chr3_4:77770694-77770713 | Msa0524280:intron | 30.0% |
| AGATGATAAGGAATATACCT+TGG | + | chr3_4:77770828-77770847 | None:intergenic | 30.0% | |
| AAAAATGGAAGCAGATGATA+AGG | + | chr3_4:77770840-77770859 | None:intergenic | 30.0% | |
| CATCTTCATAATTTGGTTAG+GGG | + | chr3_4:77770939-77770958 | None:intergenic | 30.0% | |
| CCATCTTCATAATTTGGTTA+GGG | + | chr3_4:77770940-77770959 | None:intergenic | 30.0% | |
| CCTAACCAAATTATGAAGAT+GGG | - | chr3_4:77770938-77770957 | Msa0524280:CDS | 30.0% | |
| TTTAACTGTGGAATTGCAAT+AGG | - | chr3_4:77771070-77771089 | Msa0524280:CDS | 30.0% | |
| CTGATTTAAATGTGTGGAAT+TGG | - | chr3_4:77771234-77771253 | Msa0524280:intron | 30.0% | |
| CAGATGTGAATTATGATTCA+TGG | + | chr3_4:77771397-77771416 | None:intergenic | 30.0% | |
| !!! | GAAAGCTCAATCTTGTTTTT+AGG | - | chr3_4:77771593-77771612 | Msa0524280:intron | 30.0% |
| CTTTGTATATTCCCTTAAAC+TGG | + | chr3_4:77771621-77771640 | None:intergenic | 30.0% | |
| ATAATAATCCTGGGACATAA+TGG | + | chr3_4:77771890-77771909 | None:intergenic | 30.0% | |
| CAGAAACAGAATAATAATCC+TGG | + | chr3_4:77771900-77771919 | None:intergenic | 30.0% | |
| !! | GAAAAGTATTAATCGAAGTC+TGG | + | chr3_4:77771928-77771947 | None:intergenic | 30.0% |
| AAAAAGAAACATGGTTGACA+AGG | + | chr3_4:77771950-77771969 | None:intergenic | 30.0% | |
| ATCCACTAACCTATAACTTA+TGG | - | chr3_4:77772137-77772156 | Msa0524280:intron | 30.0% | |
| GAAACTTAAGAACAGCATTT+AGG | - | chr3_4:77772310-77772329 | Msa0524280:intron | 30.0% | |
| TTAAAAGAGTAAAGACAGAG+AGG | - | chr3_4:77772927-77772946 | Msa0524280:intron | 30.0% | |
| GAAGAAAATAAATACTACCG+CGG | - | chr3_4:77773086-77773105 | Msa0524280:CDS | 30.0% | |
| AAGAAAATAAATACTACCGC+GGG | - | chr3_4:77773087-77773106 | Msa0524280:CDS | 30.0% | |
| ! | CTCTTAGTTATATTGGTAGT+AGG | - | chr3_4:77773226-77773245 | Msa0524280:CDS | 30.0% |
| ! | TAGGGATACCAAATTTTACT+AGG | - | chr3_4:77773245-77773264 | Msa0524280:CDS | 30.0% |
| ATCTACATTGTTATCAGTTG+GGG | - | chr3_4:77773270-77773289 | Msa0524280:CDS | 30.0% | |
| TGAATATATCATTCAAGGGT+TGG | - | chr3_4:77773363-77773382 | Msa0524280:five_prime_UTR | 30.0% | |
| !! | GTTTTCAAGCTGATTTTCGA+CGG | + | chr3_4:77770079-77770098 | None:intergenic | 35.0% |
| GGTATGAAGACAATCTTGAA+CGG | + | chr3_4:77770326-77770345 | None:intergenic | 35.0% | |
| !! | TGGTAATGGATTTAGGGTTA+GGG | + | chr3_4:77770360-77770379 | None:intergenic | 35.0% |
| !! | TTGGTAATGGATTTAGGGTT+AGG | + | chr3_4:77770361-77770380 | None:intergenic | 35.0% |
| ACCAGAGAATTTGTCAAGTT+GGG | + | chr3_4:77770401-77770420 | None:intergenic | 35.0% | |
| !! | AAGAATACTTAATGACGGGT+AGG | + | chr3_4:77770495-77770514 | None:intergenic | 35.0% |
| GATTCTGTCTGTGTATATTC+AGG | - | chr3_4:77770570-77770589 | Msa0524280:CDS | 35.0% | |
| ! | AGATTCTTTCTCTGGAAGTT+GGG | - | chr3_4:77770607-77770626 | Msa0524280:CDS | 35.0% |
| !! | TGTTTGGTAATGCTTATCAG+AGG | - | chr3_4:77770741-77770760 | Msa0524280:intron | 35.0% |
| ! | AGAATTGAAGAGTGCAAAGA+CGG | + | chr3_4:77770789-77770808 | None:intergenic | 35.0% |
| CCCTAACCAAATTATGAAGA+TGG | - | chr3_4:77770937-77770956 | Msa0524280:CDS | 35.0% | |
| CCCATCTTCATAATTTGGTT+AGG | + | chr3_4:77770941-77770960 | None:intergenic | 35.0% | |
| TTGATTACGGAGTTTGCAAA+GGG | - | chr3_4:77770969-77770988 | Msa0524280:CDS | 35.0% | |
| GTAGTTACTCTTTACTCCTT+TGG | + | chr3_4:77771148-77771167 | None:intergenic | 35.0% | |
| ! | TTGATAGCCATTCAATAGCT+TGG | - | chr3_4:77771364-77771383 | Msa0524280:CDS | 35.0% |
| !!! | TGTTTTTAGGTGCCAGTTTA+AGG | - | chr3_4:77771606-77771625 | Msa0524280:intron | 35.0% |
| !!! | GTTTTTAGGTGCCAGTTTAA+GGG | - | chr3_4:77771607-77771626 | Msa0524280:intron | 35.0% |
| TAAAGTTGTTGTCATGTGAC+TGG | - | chr3_4:77771710-77771729 | Msa0524280:intron | 35.0% | |
| ! | TAACCCTCTTTTTACACAAG+AGG | + | chr3_4:77771765-77771784 | None:intergenic | 35.0% |
| TCTTGTGTAAAAAGAGGGTT+AGG | - | chr3_4:77771764-77771783 | Msa0524280:intron | 35.0% | |
| GTTGCATACAATACACCAAA+TGG | - | chr3_4:77771786-77771805 | Msa0524280:intron | 35.0% | |
| CATACAATACACCAAATGGT+GGG | - | chr3_4:77771790-77771809 | Msa0524280:intron | 35.0% | |
| AAGTAATAAAAAGGGCAACC+CGG | + | chr3_4:77771856-77771875 | None:intergenic | 35.0% | |
| TAAAGTTTCCATTATGTCCC+AGG | - | chr3_4:77771879-77771898 | Msa0524280:intron | 35.0% | |
| !! | TTTGTTATTTCAGGCGTCAA+GGG | - | chr3_4:77772030-77772049 | Msa0524280:intron | 35.0% |
| ATCAGCATTCTATTGTAGCA+AGG | - | chr3_4:77772108-77772127 | Msa0524280:intron | 35.0% | |
| TGCCATAAGTTATAGGTTAG+TGG | + | chr3_4:77772142-77772161 | None:intergenic | 35.0% | |
| TGCTTTCTGCCATAAGTTAT+AGG | + | chr3_4:77772149-77772168 | None:intergenic | 35.0% | |
| GTGGATGTAACATATACATG+TGG | - | chr3_4:77772275-77772294 | Msa0524280:intron | 35.0% | |
| ! | TCTGACTTGAGATAATCTCT+TGG | + | chr3_4:77772336-77772355 | None:intergenic | 35.0% |
| AGAGATTATCTCAAGTCAGA+AGG | - | chr3_4:77772336-77772355 | Msa0524280:intron | 35.0% | |
| GCAAGTGAAATTGTTATCTG+TGG | - | chr3_4:77772410-77772429 | Msa0524280:intron | 35.0% | |
| GTGAAATTGTTATCTGTGGA+TGG | - | chr3_4:77772414-77772433 | Msa0524280:intron | 35.0% | |
| !! | AATTTTGATACCAGCAATGC+AGG | - | chr3_4:77772520-77772539 | Msa0524280:CDS | 35.0% |
| !! | AGATTTCTTTCTGAGATTGC+AGG | - | chr3_4:77772577-77772596 | Msa0524280:CDS | 35.0% |
| ! | CTTTGATCATTTGGAGTCTT+TGG | + | chr3_4:77772730-77772749 | None:intergenic | 35.0% |
| GTGCATTTGCTTTGATCATT+TGG | + | chr3_4:77772739-77772758 | None:intergenic | 35.0% | |
| TGAGATGCTAAAAAGGATTC+AGG | - | chr3_4:77772769-77772788 | Msa0524280:CDS | 35.0% | |
| AGAAAATAAATACTACCGCG+GGG | - | chr3_4:77773088-77773107 | Msa0524280:CDS | 35.0% | |
| GTGAACCTTCGAAACTATAT+GGG | + | chr3_4:77773147-77773166 | None:intergenic | 35.0% | |
| AGTGAACCTTCGAAACTATA+TGG | + | chr3_4:77773148-77773167 | None:intergenic | 35.0% | |
| TTCTTTATTGTGCAGGACTT+TGG | + | chr3_4:77773199-77773218 | None:intergenic | 35.0% | |
| ATATATCATTCAAGGGTTGG+TGG | - | chr3_4:77773366-77773385 | Msa0524280:five_prime_UTR | 35.0% | |
| ! | TGATTTTCGACGGACAACAA+GGG | + | chr3_4:77770069-77770088 | None:intergenic | 40.0% |
| AACACAACACACGATGACTT+TGG | + | chr3_4:77770123-77770142 | None:intergenic | 40.0% | |
| ATGCTGTGTCTTACAAGCAT+AGG | - | chr3_4:77770269-77770288 | Msa0524280:three_prime_UTR | 40.0% | |
| TGCTGTGTCTTACAAGCATA+GGG | - | chr3_4:77770270-77770289 | Msa0524280:three_prime_UTR | 40.0% | |
| ! | TCTCTGAAAACGGACATATC+AGG | + | chr3_4:77770301-77770320 | None:intergenic | 40.0% |
| ! | GATTTAGGGTTAGGGTTAGA+GGG | + | chr3_4:77770352-77770371 | None:intergenic | 40.0% |
| !! | GGGGTTTGGTAATGGATTTA+GGG | + | chr3_4:77770366-77770385 | None:intergenic | 40.0% |
| !! | AGGGGTTTGGTAATGGATTT+AGG | + | chr3_4:77770367-77770386 | None:intergenic | 40.0% |
| ! | CCAGAGAATTTGTCAAGTTG+GGG | + | chr3_4:77770400-77770419 | None:intergenic | 40.0% |
| GACCAGAGAATTTGTCAAGT+TGG | + | chr3_4:77770402-77770421 | None:intergenic | 40.0% | |
| GTGAATGGAGATTCTTTCTC+TGG | - | chr3_4:77770599-77770618 | Msa0524280:CDS | 40.0% | |
| ! | GAGATTCTTTCTCTGGAAGT+TGG | - | chr3_4:77770606-77770625 | Msa0524280:CDS | 40.0% |
| ! | TGTTGGAGTGTTAACTGAGA+AGG | - | chr3_4:77770634-77770653 | Msa0524280:CDS | 40.0% |
| ! | GTTGGAGTGTTAACTGAGAA+GGG | - | chr3_4:77770635-77770654 | Msa0524280:CDS | 40.0% |
| ! | TTGGAGTGTTAACTGAGAAG+GGG | - | chr3_4:77770636-77770655 | Msa0524280:CDS | 40.0% |
| ATGGGAAGAGCTATTGCATA+TGG | - | chr3_4:77770678-77770697 | Msa0524280:intron | 40.0% | |
| AATATACCTTGGCATCCTTG+CGG | + | chr3_4:77770817-77770836 | None:intergenic | 40.0% | |
| AGAGGCGATGGTTGAAAAAA+TGG | + | chr3_4:77770855-77770874 | None:intergenic | 40.0% | |
| AAAAGAGATTTCAGAGGCGA+TGG | + | chr3_4:77770867-77770886 | None:intergenic | 40.0% | |
| !! | CTCTTGCTTTTGAAGGGTAA+TGG | - | chr3_4:77770893-77770912 | Msa0524280:intron | 40.0% |
| AGGTGCCCATCTTCATAATT+TGG | + | chr3_4:77770946-77770965 | None:intergenic | 40.0% | |
| GTTGATTACGGAGTTTGCAA+AGG | - | chr3_4:77770968-77770987 | Msa0524280:CDS | 40.0% | |
| ATTTGTCACCACAATGTGAC+AGG | + | chr3_4:77771306-77771325 | None:intergenic | 40.0% | |
| ATTGCGACCAAGCTATTGAA+TGG | + | chr3_4:77771374-77771393 | None:intergenic | 40.0% | |
| ! | GAGCAGTATCAGCTTTAACA+TGG | - | chr3_4:77771425-77771444 | Msa0524280:intron | 40.0% |
| GCATAACAAGAAACCTAGCA+TGG | + | chr3_4:77771464-77771483 | None:intergenic | 40.0% | |
| !! | TATGGCGTGCTCTGAAAAAA+TGG | + | chr3_4:77771486-77771505 | None:intergenic | 40.0% |
| TAAAGTTTGAGGGGTAACCT+TGG | - | chr3_4:77771678-77771697 | Msa0524280:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAAAG+AGG | - | chr3_4:77771758-77771777 | Msa0524280:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAAGA+GGG | - | chr3_4:77771759-77771778 | Msa0524280:intron | 40.0% | |
| GCATACAATACACCAAATGG+TGG | - | chr3_4:77771789-77771808 | Msa0524280:intron | 40.0% | |
| !! | CTTTGTTATTTCAGGCGTCA+AGG | - | chr3_4:77772029-77772048 | Msa0524280:intron | 40.0% |
| ACTGTACGAACTGAACTCAA+GGG | - | chr3_4:77772184-77772203 | Msa0524280:intron | 40.0% | |
| ATCTGTGGATGGTATCAGAA+AGG | - | chr3_4:77772425-77772444 | Msa0524280:intron | 40.0% | |
| !! | ATGGTATCAGAAAGGCATTG+AGG | - | chr3_4:77772433-77772452 | Msa0524280:intron | 40.0% |
| TTGCAGAGAAAGAACTCAAG+TGG | + | chr3_4:77772487-77772506 | None:intergenic | 40.0% | |
| !!! | TGTTACTTTTCCTGCATTGC+TGG | + | chr3_4:77772533-77772552 | None:intergenic | 40.0% |
| !! | AGCTGACTTTTACCCCTTTA+CGG | - | chr3_4:77772662-77772681 | Msa0524280:intron | 40.0% |
| TTCCTGTAAACAGCCGTAAA+GGG | + | chr3_4:77772678-77772697 | None:intergenic | 40.0% | |
| TTTCCTGTAAACAGCCGTAA+AGG | + | chr3_4:77772679-77772698 | None:intergenic | 40.0% | |
| GAAGAGGTGAGATGCTAAAA+AGG | - | chr3_4:77772762-77772781 | Msa0524280:CDS | 40.0% | |
| CTTATGCATGTGTCCATTAG+AGG | - | chr3_4:77772808-77772827 | Msa0524280:CDS | 40.0% | |
| TGTCATAAGAAACCAGCAGT+TGG | - | chr3_4:77772901-77772920 | Msa0524280:CDS | 40.0% | |
| ! | CTCTTTTAACATCCAACTGC+TGG | + | chr3_4:77772916-77772935 | None:intergenic | 40.0% |
| ! | GATAAAGCCACAAAGAGTAC+AGG | - | chr3_4:77772962-77772981 | Msa0524280:intron | 40.0% |
| AGATCTTATTAGTTCGGACG+AGG | - | chr3_4:77773000-77773019 | Msa0524280:intron | 40.0% | |
| TAGTGCCCATATAGTTTCGA+AGG | - | chr3_4:77773139-77773158 | Msa0524280:CDS | 40.0% | |
| ! | CTGATTTTCGACGGACAACA+AGG | + | chr3_4:77770070-77770089 | None:intergenic | 45.0% |
| TCGTCATCATCAGCATCAAG+CGG | + | chr3_4:77770250-77770269 | None:intergenic | 45.0% | |
| ! | TTGAACGGCGTCTCTGAAAA+CGG | + | chr3_4:77770311-77770330 | None:intergenic | 45.0% |
| ! | GGATTTAGGGTTAGGGTTAG+AGG | + | chr3_4:77770353-77770372 | None:intergenic | 45.0% |
| !! | TTTGTCAAGTTGGGGATCGT+CGG | + | chr3_4:77770392-77770411 | None:intergenic | 45.0% |
| CCCCAACTTGACAAATTCTC+TGG | - | chr3_4:77770397-77770416 | Msa0524280:three_prime_UTR | 45.0% | |
| AGCAGGGGTTAAACATTGGT+TGG | + | chr3_4:77770434-77770453 | None:intergenic | 45.0% | |
| TTTAACCCCTGCTGAGCTTA+GGG | - | chr3_4:77770441-77770460 | Msa0524280:three_prime_UTR | 45.0% | |
| TCAGAGGAACTGTCAAGAGA+AGG | - | chr3_4:77770757-77770776 | Msa0524280:CDS | 45.0% | |
| AGGAACTGTCAAGAGAAGGA+AGG | - | chr3_4:77770761-77770780 | Msa0524280:CDS | 45.0% | |
| CTTCAATTCTACTGTCCGCA+AGG | - | chr3_4:77770799-77770818 | Msa0524280:CDS | 45.0% | |
| ! | ATGGGCACCTCTGTTGATTA+CGG | - | chr3_4:77770956-77770975 | Msa0524280:CDS | 45.0% |
| GCAAACTCCGTAATCAACAG+AGG | + | chr3_4:77770966-77770985 | None:intergenic | 45.0% | |
| GTGTGGAATTGGACACTAGT+TGG | - | chr3_4:77771245-77771264 | Msa0524280:intron | 45.0% | |
| GCATTTGTCCTGTCACATTG+TGG | - | chr3_4:77771295-77771314 | Msa0524280:intron | 45.0% | |
| AACAAGAAACCTAGCATGGC+AGG | + | chr3_4:77771460-77771479 | None:intergenic | 45.0% | |
| GTTGTTGTCATGTGACTGGA+AGG | - | chr3_4:77771714-77771733 | Msa0524280:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr3_4:77771754-77771773 | None:intergenic | 45.0% |
| CTTGAGTTCAGTTCGTACAG+TGG | + | chr3_4:77772185-77772204 | None:intergenic | 45.0% | |
| CACTGTACGAACTGAACTCA+AGG | - | chr3_4:77772183-77772202 | Msa0524280:intron | 45.0% | |
| TACGAACTGAACTCAAGGGA+GGG | - | chr3_4:77772188-77772207 | Msa0524280:intron | 45.0% | |
| !!! | AAGTTTGTTTTGTCGGCGAG+GGG | + | chr3_4:77772378-77772397 | None:intergenic | 45.0% |
| !!! | CAAGTTTGTTTTGTCGGCGA+GGG | + | chr3_4:77772379-77772398 | None:intergenic | 45.0% |
| !!! | TCAAGTTTGTTTTGTCGGCG+AGG | + | chr3_4:77772380-77772399 | None:intergenic | 45.0% |
| TCCTGTAAACAGCCGTAAAG+GGG | + | chr3_4:77772677-77772696 | None:intergenic | 45.0% | |
| AAAGCAAATGCACAGCGAAG+AGG | - | chr3_4:77772746-77772765 | Msa0524280:CDS | 45.0% | |
| CAGGTGTGTTAAGCCTCTAA+TGG | + | chr3_4:77772824-77772843 | None:intergenic | 45.0% | |
| AGAGTAAAGACAGAGAGGCA+AGG | - | chr3_4:77772932-77772951 | Msa0524280:intron | 45.0% | |
| AAAGACAGAGAGGCAAGGTT+TGG | - | chr3_4:77772937-77772956 | Msa0524280:intron | 45.0% | |
| CATCTTGCCTGTACTCTTTG+TGG | + | chr3_4:77772972-77772991 | None:intergenic | 45.0% | |
| AAATAAATACTACCGCGGGG+TGG | - | chr3_4:77773091-77773110 | Msa0524280:CDS | 45.0% | |
| ! | TAATTTTTACCACCACCCCG+CGG | + | chr3_4:77773106-77773125 | None:intergenic | 45.0% |
| TTTCGACGGACAACAAGGGA+GGG | + | chr3_4:77770065-77770084 | None:intergenic | 50.0% | |
| ! | TTTTCGACGGACAACAAGGG+AGG | + | chr3_4:77770066-77770085 | None:intergenic | 50.0% |
| GTCGTCAAACCACGAAGATC+TGG | - | chr3_4:77770168-77770187 | Msa0524280:three_prime_UTR | 50.0% | |
| CTCTGTCGTGAAGAGAAAGC+AGG | + | chr3_4:77770198-77770217 | None:intergenic | 50.0% | |
| ATCAAGCGGAGAAGGAGAAG+CGG | + | chr3_4:77770236-77770255 | None:intergenic | 50.0% | |
| TCATCAGCATCAAGCGGAGA+AGG | + | chr3_4:77770244-77770263 | None:intergenic | 50.0% | |
| AGGGTTAGGGTTAGAGGGTT+GGG | + | chr3_4:77770347-77770366 | None:intergenic | 50.0% | |
| TAGGGTTAGGGTTAGAGGGT+TGG | + | chr3_4:77770348-77770367 | None:intergenic | 50.0% | |
| GCTCAGCAGGGGTTAAACAT+TGG | + | chr3_4:77770438-77770457 | None:intergenic | 50.0% | |
| GTTTAACCCCTGCTGAGCTT+AGG | - | chr3_4:77770440-77770459 | Msa0524280:three_prime_UTR | 50.0% | |
| AGATTCCCTAAGCTCAGCAG+GGG | + | chr3_4:77770449-77770468 | None:intergenic | 50.0% | |
| CAGATTCCCTAAGCTCAGCA+GGG | + | chr3_4:77770450-77770469 | None:intergenic | 50.0% | |
| ACAGATTCCCTAAGCTCAGC+AGG | + | chr3_4:77770451-77770470 | None:intergenic | 50.0% | |
| TCTGGAAGTTGGGTCACTGT+TGG | - | chr3_4:77770617-77770636 | Msa0524280:CDS | 50.0% | |
| TGCAAAGGGAAAAGAGCCGA+TGG | - | chr3_4:77770983-77771002 | Msa0524280:intron | 50.0% | |
| GCAAAGGGAAAAGAGCCGAT+GGG | - | chr3_4:77770984-77771003 | Msa0524280:intron | 50.0% | |
| CAGTGTACAAGCCATCCCAT+CGG | + | chr3_4:77771002-77771021 | None:intergenic | 50.0% | |
| ATACATGTGCCTGCCATGCT+AGG | - | chr3_4:77771448-77771467 | Msa0524280:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr3_4:77771698-77771717 | None:intergenic | 50.0% | |
| GTCATGTGACTGGAAGGTCA+CGG | - | chr3_4:77771720-77771739 | Msa0524280:intron | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | - | chr3_4:77771721-77771740 | Msa0524280:intron | 50.0% | |
| GTACGAACTGAACTCAAGGG+AGG | - | chr3_4:77772187-77772206 | Msa0524280:intron | 50.0% | |
| !!! | AGTTTGTTTTGTCGGCGAGG+GGG | + | chr3_4:77772377-77772396 | None:intergenic | 50.0% |
| ACAACAGCTTCACACTCGCA+AGG | - | chr3_4:77772550-77772569 | Msa0524280:CDS | 50.0% | |
| CAACAGCTTCACACTCGCAA+GGG | - | chr3_4:77772551-77772570 | Msa0524280:CDS | 50.0% | |
| ACCCCTTTACGGCTGTTTAC+AGG | - | chr3_4:77772673-77772692 | Msa0524280:intron | 50.0% | |
| GCAGGAGATCCAGATCTTCG+TGG | + | chr3_4:77770180-77770199 | None:intergenic | 55.0% | |
| TCAAGCGGAGAAGGAGAAGC+GGG | + | chr3_4:77770235-77770254 | None:intergenic | 55.0% | |
| ! | GTCGGTGAGGGGTTTGGTAA+TGG | + | chr3_4:77770374-77770393 | None:intergenic | 55.0% |
| AAGTTGGGGATCGTCGGTGA+GGG | + | chr3_4:77770386-77770405 | None:intergenic | 55.0% | |
| TACTGTCCGCAAGGATGCCA+AGG | - | chr3_4:77770808-77770827 | Msa0524280:CDS | 55.0% | |
| AGGGAAAAGAGCCGATGGGA+TGG | - | chr3_4:77770988-77771007 | Msa0524280:intron | 55.0% | |
| ! | CGATGGGATGGCTTGTACAC+TGG | - | chr3_4:77771000-77771019 | Msa0524280:intron | 55.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr3_4:77771733-77771752 | Msa0524280:intron | 55.0% | |
| ! | CAAATGGTGGGACCCCTTCT+CGG | - | chr3_4:77771802-77771821 | Msa0524280:intron | 55.0% |
| CTAAAGCTCCCGCATACGCA+GGG | + | chr3_4:77771829-77771848 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | + | chr3_4:77771830-77771849 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr3_4:77771834-77771853 | Msa0524280:intron | 55.0% |
| TAAATACTACCGCGGGGTGG+TGG | - | chr3_4:77773094-77773113 | Msa0524280:CDS | 55.0% | |
| AGTTGGGGATCGTCGGTGAG+GGG | + | chr3_4:77770385-77770404 | None:intergenic | 60.0% | |
| ! | CAAGTTGGGGATCGTCGGTG+AGG | + | chr3_4:77770387-77770406 | None:intergenic | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr3_4:77771687-77771706 | Msa0524280:intron | 60.0% | |
| CGAGAAGGGGTCCCACCATT+TGG | + | chr3_4:77771804-77771823 | None:intergenic | 60.0% | |
| CATACGCAGGGTCCGAGAAG+GGG | + | chr3_4:77771817-77771836 | None:intergenic | 60.0% | |
| GCATACGCAGGGTCCGAGAA+GGG | + | chr3_4:77771818-77771837 | None:intergenic | 60.0% | |
| CTTCTCGGACCCTGCGTATG+CGG | - | chr3_4:77771817-77771836 | Msa0524280:intron | 60.0% | |
| TTCTCGGACCCTGCGTATGC+GGG | - | chr3_4:77771818-77771837 | Msa0524280:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr3_4:77771835-77771854 | Msa0524280:intron | 60.0% |
| GGAGAAGCGGGAGGGGTTTC+AGG | + | chr3_4:77770223-77770242 | None:intergenic | 65.0% | |
| CGGAGAAGGAGAAGCGGGAG+GGG | + | chr3_4:77770230-77770249 | None:intergenic | 65.0% | |
| GCGGAGAAGGAGAAGCGGGA+GGG | + | chr3_4:77770231-77770250 | None:intergenic | 65.0% | |
| AGCGGAGAAGGAGAAGCGGG+AGG | + | chr3_4:77770232-77770251 | None:intergenic | 65.0% | |
| GGGATCGTCGGTGAGGGGTT+TGG | + | chr3_4:77770380-77770399 | None:intergenic | 65.0% | |
| CGCATACGCAGGGTCCGAGA+AGG | + | chr3_4:77771819-77771838 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77770053 | 77773470 | 77770053 | ID=Msa0524280;Name=Msa0524280 |
| chr3_4 | mRNA | 77770053 | 77773470 | 77770053 | ID=Msa0524280-mRNA-1;Parent=Msa0524280;Name=Msa0524280-mRNA-1;_AED=0.09;_eAED=0.09;_QI=113|0.85|0.87|1|1|1|8|440|410 |
| chr3_4 | exon | 77770053 | 77770655 | 77770053 | ID=Msa0524280-mRNA-1:exon:22851;Parent=Msa0524280-mRNA-1 |
| chr3_4 | exon | 77770756 | 77770828 | 77770756 | ID=Msa0524280-mRNA-1:exon:22850;Parent=Msa0524280-mRNA-1 |
| chr3_4 | exon | 77770925 | 77770989 | 77770925 | ID=Msa0524280-mRNA-1:exon:22849;Parent=Msa0524280-mRNA-1 |
| chr3_4 | exon | 77771069 | 77771212 | 77771069 | ID=Msa0524280-mRNA-1:exon:22848;Parent=Msa0524280-mRNA-1 |
| chr3_4 | exon | 77771314 | 77771397 | 77771314 | ID=Msa0524280-mRNA-1:exon:22847;Parent=Msa0524280-mRNA-1 |
| chr3_4 | exon | 77772491 | 77772615 | 77772491 | ID=Msa0524280-mRNA-1:exon:22846;Parent=Msa0524280-mRNA-1 |
| chr3_4 | exon | 77772694 | 77772931 | 77772694 | ID=Msa0524280-mRNA-1:exon:22845;Parent=Msa0524280-mRNA-1 |
| chr3_4 | exon | 77773017 | 77773470 | 77773017 | ID=Msa0524280-mRNA-1:exon:22844;Parent=Msa0524280-mRNA-1 |
| chr3_4 | five_prime_UTR | 77773358 | 77773470 | 77773358 | ID=Msa0524280-mRNA-1:five_prime_utr;Parent=Msa0524280-mRNA-1 |
| chr3_4 | CDS | 77773017 | 77773357 | 77773017 | ID=Msa0524280-mRNA-1:cds;Parent=Msa0524280-mRNA-1 |
| chr3_4 | CDS | 77772694 | 77772931 | 77772694 | ID=Msa0524280-mRNA-1:cds;Parent=Msa0524280-mRNA-1 |
| chr3_4 | CDS | 77772491 | 77772615 | 77772491 | ID=Msa0524280-mRNA-1:cds;Parent=Msa0524280-mRNA-1 |
| chr3_4 | CDS | 77771314 | 77771397 | 77771314 | ID=Msa0524280-mRNA-1:cds;Parent=Msa0524280-mRNA-1 |
| chr3_4 | CDS | 77771069 | 77771212 | 77771069 | ID=Msa0524280-mRNA-1:cds;Parent=Msa0524280-mRNA-1 |
| chr3_4 | CDS | 77770925 | 77770989 | 77770925 | ID=Msa0524280-mRNA-1:cds;Parent=Msa0524280-mRNA-1 |
| chr3_4 | CDS | 77770756 | 77770828 | 77770756 | ID=Msa0524280-mRNA-1:cds;Parent=Msa0524280-mRNA-1 |
| chr3_4 | CDS | 77770493 | 77770655 | 77770493 | ID=Msa0524280-mRNA-1:cds;Parent=Msa0524280-mRNA-1 |
| chr3_4 | three_prime_UTR | 77770053 | 77770492 | 77770053 | ID=Msa0524280-mRNA-1:three_prime_utr;Parent=Msa0524280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
