AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0159620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159620 MtrunA17_Chr1g0171931 97.046 1388 32 3 1 1383 1 1384 0.0 2758
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0159620 AT3G57060.1 71.302 1244 331 8 1 1230 1 1232 0.0 1832
Msa0159620 AT3G57060.2 71.302 1244 331 8 1 1230 1 1232 0.0 1831
Msa0159620 AT3G57060.3 71.302 1244 331 8 1 1230 1 1232 0.0 1831

Find 297 sgRNAs with CRISPR-Local

Find 541 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCAAAGAAGTTTGCAAAAT+TGG 0.101126 1_4:-30254437 Msa0159620:CDS
TCAAAGCTTTGTAGAAATTT+TGG 0.106400 1_4:-30256045 Msa0159620:CDS
AATAATAGTGTTAGAATATT+TGG 0.138633 1_4:-30256715 Msa0159620:CDS
CAATCTTCTGTTGATGGATT+TGG 0.143554 1_4:+30254326 None:intergenic
ATGTTAGTTGATATCAATTT+TGG 0.153440 1_4:+30258890 None:intergenic
TATCGCAGATATCAGCTTTA+TGG 0.179154 1_4:-30256966 Msa0159620:intron
GCAGAAAAGGAAATTGTTTC+TGG 0.193555 1_4:-30256114 Msa0159620:CDS
ACTTCCATTGTTAGGGAAAT+TGG 0.198161 1_4:-30258998 Msa0159620:CDS
GCATCTTTGATTTGCAATAT+TGG 0.212634 1_4:-30252470 Msa0159620:CDS
TTTGGCTTCCAGCAAATATT+TGG 0.229758 1_4:-30256666 Msa0159620:CDS
ATCCCTCAGTTCTGTTTATA+AGG 0.231793 1_4:-30256560 Msa0159620:CDS
GCTAGTATCAAAAGCGTTTA+AGG 0.234254 1_4:-30258795 Msa0159620:CDS
TCTACAAAGCTTTGACAAAA+AGG 0.237517 1_4:+30256053 None:intergenic
TGCTGTCAATCTTCTGTTGA+TGG 0.244441 1_4:+30254320 None:intergenic
AGGAAATGTTTGTAGGGTTT+TGG 0.249420 1_4:+30260642 None:intergenic
ACAAATGCTTTGTCTATAAA+TGG 0.250566 1_4:-30253027 Msa0159620:CDS
TTACAAGACATCATTGATAT+TGG 0.252982 1_4:-30256835 Msa0159620:CDS
ATGTCAGCTGCTATGATTTC+TGG 0.254360 1_4:+30256592 None:intergenic
GTCTAAAGTTGATCCTTTAC+TGG 0.254602 1_4:-30256800 Msa0159620:CDS
AACCCGTGCATTCGTGGAAT+TGG 0.267491 1_4:-30259432 Msa0159620:CDS
CGGTTCAAAGGACAAGAATT+TGG 0.269747 1_4:-30256091 Msa0159620:CDS
TCTTCAGTATCCAGAATTAC+AGG 0.274744 1_4:-30255705 Msa0159620:intron
AGTTGGCACACTGGTCTCTA+AGG 0.298241 1_4:-30257664 Msa0159620:CDS
GATAAAATATACCTTCTTAA+TGG 0.298342 1_4:+30254933 None:intergenic
ATTCTTCTGAGCCATCAATT+TGG 0.301831 1_4:+30258093 None:intergenic
ATAGTTTAATTACTGGCTTT+TGG 0.305867 1_4:-30256684 Msa0159620:CDS
CACAAGGAGTCGTGTGCTTC+AGG 0.306091 1_4:-30258675 Msa0159620:CDS
ACCAATGTGAAAGGTGAAAA+AGG 0.309165 1_4:-30252795 Msa0159620:CDS
CTCTTCTGTTGCGTTGGATC+TGG 0.311031 1_4:+30260775 None:intergenic
TCAGGAAGCAAATTATATAT+TGG 0.321717 1_4:+30255030 None:intergenic
AATCTTCTGTTGATGGATTT+GGG 0.324531 1_4:+30254327 None:intergenic
AGTCCATGGTTCTAAAAGAT+TGG 0.329611 1_4:+30255425 None:intergenic
TACAAGACATCATTGATATT+GGG 0.330318 1_4:-30256834 Msa0159620:CDS
GCCTTGCAACTTCCATTGTT+AGG 0.335205 1_4:-30259006 Msa0159620:CDS
GTGTCTTTGACATAATCTTT+TGG 0.335775 1_4:+30258965 None:intergenic
TGCAAGACTCAAGAGATTCT+TGG 0.336217 1_4:+30257728 None:intergenic
ATCGCAGATATCAGCTTTAT+GGG 0.340239 1_4:-30256965 Msa0159620:intron
CAGCTATCATTTACTGAAAA+GGG 0.343144 1_4:-30254640 Msa0159620:CDS
ATTCGACCGTGTTTACTCTT+TGG 0.348881 1_4:-30260528 Msa0159620:CDS
AGTAGGGTGAACAGCATAAA+TGG 0.350048 1_4:+30256615 None:intergenic
GACATCATTGATATTGGGTT+TGG 0.354628 1_4:-30256829 Msa0159620:CDS
AATATAGACCAATTGATTCA+TGG 0.360975 1_4:+30256441 None:intergenic
TTACCAGGGGCAACATCTTT+CGG 0.364533 1_4:+30258066 None:intergenic
GTTGTTGTTGTCGTCGTCTT+CGG 0.365529 1_4:+30260676 None:intergenic
GTGGAGAGTCTTATAAGATT+AGG 0.370785 1_4:-30258844 Msa0159620:CDS
ATTCTCGATAGTTTAATTAC+TGG 0.376639 1_4:-30256691 Msa0159620:CDS
ACCAATGTGAAAGATGAAAA+TGG 0.377025 1_4:-30252569 Msa0159620:CDS
GAGTCGTGTGCTTCAGGTGT+GGG 0.377587 1_4:-30258669 Msa0159620:CDS
TGTTAGGAAGAATGCGGTTC+TGG 0.378556 1_4:-30255364 Msa0159620:CDS
CTAATGTTGATTCGCTTTCA+AGG 0.378765 1_4:-30260424 Msa0159620:CDS
GAATGCTCTTGTAGCCGTGC+TGG 0.384024 1_4:-30258822 Msa0159620:CDS
GCTAGCTTTGTGTCGATTGA+TGG 0.385561 1_4:-30255672 Msa0159620:CDS
AGCTTCATTTGAGGCAACTT+TGG 0.388735 1_4:-30258483 Msa0159620:CDS
TGGTGGAAAAGCTATGTAAT+AGG 0.392064 1_4:-30254824 Msa0159620:CDS
GATGCCCTCTGTCGCATAAT+CGG 0.393104 1_4:-30259163 Msa0159620:CDS
TTTCTTGAACTTTCCAAGAA+AGG 0.394942 1_4:-30255143 Msa0159620:intron
TCGAAGTCTAATACATCTTC+AGG 0.395081 1_4:-30254259 Msa0159620:intron
TCAGCTATCATTTACTGAAA+AGG 0.396538 1_4:-30254641 Msa0159620:CDS
GGCATTCTTGTTCCTCACTT+TGG 0.397944 1_4:-30258866 Msa0159620:CDS
CAGATATAGAAGTATCTTGT+AGG 0.400444 1_4:+30255385 None:intergenic
ACATACCTTAGGAGTATTGC+TGG 0.400540 1_4:+30260286 None:intergenic
TTGGTTGCTTCACTTGAGGC+TGG 0.401732 1_4:-30258233 Msa0159620:CDS
TTGATATTGGGTTTGGTCGT+TGG 0.402387 1_4:-30256822 Msa0159620:CDS
ATTGCAGAAGCCTGTAATTC+TGG 0.403330 1_4:+30255695 None:intergenic
TTTAGTATCCGAGCTCTTTG+TGG 0.403548 1_4:+30259406 None:intergenic
GCCTACACTTGTCCAATTGA+TGG 0.405204 1_4:-30258177 Msa0159620:CDS
GTCCATGGTTCTAAAAGATT+GGG 0.405308 1_4:+30255426 None:intergenic
CTTGAAAGCGAATCAACATT+AGG 0.408386 1_4:+30260425 None:intergenic
AAGATACTTCTATATCTGTT+AGG 0.410881 1_4:-30255380 Msa0159620:CDS
CACATGGCTGATGCAGTTGC+TGG 0.412189 1_4:-30259055 Msa0159620:CDS
GAAGCAGTGGAGAATGCTTT+CGG 0.412261 1_4:-30257786 Msa0159620:CDS
AATGATATAAATGCCGAGTT+AGG 0.414277 1_4:-30256183 Msa0159620:CDS
TTGTCTTAACCATGGGTGAT+TGG 0.417462 1_4:+30252697 None:intergenic
CAAAACACTAGAAGATGCTT+TGG 0.417679 1_4:+30252758 None:intergenic
GATAATTTGCTAAGTATGTC+AGG 0.420411 1_4:+30255012 None:intergenic
TTTGCGACTTGAACTGTGAT+TGG 0.423041 1_4:+30256499 None:intergenic
TTTAATTGCTTCCATTAAGA+AGG 0.423664 1_4:-30254944 Msa0159620:intron
AAAGCGTTTAAGGATATTGA+TGG 0.424340 1_4:-30258785 Msa0159620:CDS
GCAGCTCTTGAGTTTATAGT+TGG 0.425455 1_4:-30257681 Msa0159620:CDS
CCTTGCAACTTCCATTGTTA+GGG 0.425717 1_4:-30259005 Msa0159620:CDS
ACCCGTGCATTCGTGGAATT+GGG 0.427396 1_4:-30259431 Msa0159620:CDS
GAGAGGGAGGAAATGTTTGT+AGG 0.427463 1_4:+30260635 None:intergenic
CAGAAGATGATGCCATCAAT+TGG 0.427958 1_4:+30258165 None:intergenic
TGCTCCAAGTTCCCAACATC+AGG 0.431005 1_4:+30258266 None:intergenic
ACTCGGAGCTGTGGACCAAA+TGG 0.432565 1_4:+30258506 None:intergenic
GAAAGGGTACATTAATGAAA+TGG 0.432956 1_4:-30255219 Msa0159620:CDS
TGTGCCTGATGTTGGGAACT+TGG 0.434082 1_4:-30258270 Msa0159620:CDS
TTGTCTTAACCATGGGTGAC+TGG 0.438592 1_4:+30252920 None:intergenic
CTAGACGATGCTTCCGGTAC+AGG 0.442567 1_4:+30252988 None:intergenic
TGTAAGCAATTCCAAATTGA+TGG 0.444339 1_4:-30258104 Msa0159620:CDS
GGTCGAATACGTCTTGGTCT+TGG 0.445031 1_4:+30260543 None:intergenic
AGGCAACTTTGGATCAGTAT+AGG 0.447151 1_4:-30258472 Msa0159620:CDS
GCTGCATACCAAATATTTGC+TGG 0.447487 1_4:+30256658 None:intergenic
TTCATTGCTCAGGTTCTGCT+TGG 0.447519 1_4:+30254990 None:intergenic
AAAGACAAGTAACCTTCGTC+AGG 0.451756 1_4:+30259328 None:intergenic
TTTGACGAATTCTTCGAGTT+GGG 0.451987 1_4:+30260607 None:intergenic
CTTGGAGCAGACTAGGGCCT+TGG 0.453032 1_4:-30258252 Msa0159620:CDS
TGGTCATTGATGCAGACTTT+TGG 0.454378 1_4:-30255652 Msa0159620:intron
AAATCTCATTGCAAGCTCAT+TGG 0.454777 1_4:-30259386 Msa0159620:CDS
TGCAGAAAGATTCATTGCTC+AGG 0.455401 1_4:+30254980 None:intergenic
AAGCTATGTAATAGGTTTAG+TGG 0.456230 1_4:-30254816 Msa0159620:CDS
AGATTCTTGGCAGTTTCCAT+TGG 0.458277 1_4:+30257741 None:intergenic
TGGTTTGTGGAACGAGGTTG+CGG 0.460076 1_4:-30258615 Msa0159620:CDS
CACTAGGAGATTTAGCAGTA+AGG 0.461782 1_4:-30255452 Msa0159620:CDS
TGCTTTATCTGTCCTTTGCA+TGG 0.462703 1_4:-30256893 Msa0159620:CDS
TTCGAGTTGGGAGGAGGAGA+GGG 0.463748 1_4:+30260619 None:intergenic
AGATGAGAGAATTTCAAATC+TGG 0.465739 1_4:-30255177 Msa0159620:CDS
AGAAAAGAGCTACTCGGTCT+AGG 0.465973 1_4:-30252529 Msa0159620:CDS
TCATACTGCCATGAATCAAT+TGG 0.466297 1_4:-30256449 Msa0159620:CDS
AGAGGGAGGAAATGTTTGTA+GGG 0.466608 1_4:+30260636 None:intergenic
ATGTTGCAGCATAACCCATT+TGG 0.467413 1_4:-30258521 Msa0159620:CDS
TCAGCTTCTCTTCACAGTTG+TGG 0.467506 1_4:-30255517 Msa0159620:CDS
CTTTGACGAATTCTTCGAGT+TGG 0.469018 1_4:+30260606 None:intergenic
GATTATGTCAAAGACACTAT+TGG 0.471543 1_4:-30258959 Msa0159620:CDS
AGGTGGTGGCCGCAAGTAGC+AGG 0.472720 1_4:-30259462 Msa0159620:CDS
TTGGGAACTTGGAGCAGACT+AGG 0.473783 1_4:-30258259 Msa0159620:CDS
CTAACTTTCTGATCTTGCAT+TGG 0.475466 1_4:-30252444 None:intergenic
GATTCTTGGCAGTTTCCATT+GGG 0.476024 1_4:+30257742 None:intergenic
CTGTGTGGGAAGCGTACCGT+TGG 0.476643 1_4:+30260799 None:intergenic
TCACCCATGGTTAAGACAAC+AGG 0.477158 1_4:-30252916 Msa0159620:intron
ATTCTTGTTCCTCACTTTGG+TGG 0.478327 1_4:-30258863 Msa0159620:CDS
GAGGTTGCGGAAGTTGCTGC+TGG 0.479961 1_4:-30258602 Msa0159620:CDS
ATTAGACTTCGAGTGATCTT+CGG 0.483828 1_4:+30254270 None:intergenic
CTTGTCAGAGGATTCTGTTA+TGG 0.485956 1_4:-30254575 Msa0159620:CDS
ACTCAGTTTCGATTGGTTTG+TGG 0.486591 1_4:-30258628 Msa0159620:CDS
CCACATGGAAAAGAAGGAAC+AGG 0.486777 1_4:-30254368 Msa0159620:CDS
AGAAACAACCCGTGCATTCG+TGG 0.488559 1_4:-30259438 Msa0159620:CDS
GCTCCGAGTAGCTTCATTTG+AGG 0.488817 1_4:-30258492 Msa0159620:CDS
AAGACATCAACTGGTGTGCT+TGG 0.489686 1_4:-30256865 Msa0159620:CDS
AGTTCTGTTTATAAGGATTG+TGG 0.492770 1_4:-30256553 Msa0159620:CDS
AGATGACAAGGCAAAATTGT+TGG 0.492878 1_4:-30256740 Msa0159620:CDS
GGCCTTGGTTGCTTCACTTG+AGG 0.492951 1_4:-30258237 Msa0159620:CDS
TAAGTTCCACATGGAAAAGA+AGG 0.493192 1_4:-30254374 Msa0159620:CDS
AGCAATGACACAGCATCAAC+CGG 0.493997 1_4:-30256343 Msa0159620:CDS
CTACGAAATTCAAATGAAAG+TGG 0.494219 1_4:+30260827 None:intergenic
CTTTCGGTACAATATACATA+AGG 0.494815 1_4:-30257770 Msa0159620:CDS
AGTACTACAGGACAGACAAA+TGG 0.495266 1_4:-30254853 Msa0159620:intron
GAGATTCTCTAAATGTATAG+AGG 0.495307 1_4:-30258207 Msa0159620:CDS
TTATAGGAGCTCAACGGTCC+AGG 0.495582 1_4:-30252827 Msa0159620:intron
AATTGTTTCTGGCGGTTCAA+AGG 0.497543 1_4:-30256103 Msa0159620:CDS
AATTCAAATGAAAGTGGAAG+TGG 0.497809 1_4:+30260833 None:intergenic
AAGAGTGCGAGGGAAGATGA+AGG 0.498519 1_4:+30260724 None:intergenic
CTCTGACAAGGCATGTTCAT+AGG 0.498818 1_4:+30254588 None:intergenic
AATGCTCTTGTAGCCGTGCT+GGG 0.498820 1_4:-30258821 Msa0159620:CDS
ATCAAGTTCTAAACCTGTAC+CGG 0.500937 1_4:-30253001 Msa0159620:CDS
GAAACTTGCAAAAGAGAGAA+AGG 0.502003 1_4:-30256389 Msa0159620:CDS
CACTAGACTGTGTCGTGTAA+TGG 0.507349 1_4:+30259122 None:intergenic
ACCGCGGCTTTGCTCTGCGG+TGG 0.507351 1_4:+30256915 None:intergenic
CTCGGAGCTGTGGACCAAAT+GGG 0.508193 1_4:+30258507 None:intergenic
GAAGATGAAGGTTGGAGCCA+TGG 0.509622 1_4:+30260736 None:intergenic
AGTCGTGTGCTTCAGGTGTG+GGG 0.511122 1_4:-30258668 Msa0159620:CDS
CGGAGGGTGAATCTTGTTCG+AGG 0.511388 1_4:+30260696 None:intergenic
TCAAAGGACAAGAATTTGGT+TGG 0.512463 1_4:-30256087 Msa0159620:CDS
TTGTTGTCGTCGTCTTCGGA+GGG 0.515858 1_4:+30260680 None:intergenic
CCCTAACAATGGAAGTTGCA+AGG 0.516451 1_4:+30259005 None:intergenic
GGAAGTTGCTGCTGGGAGAT+TGG 0.517813 1_4:-30258594 Msa0159620:CDS
TAACCTCTTGTCTTAACCAT+GGG 0.517892 1_4:+30252690 None:intergenic
GTCGTGTGCTTCAGGTGTGG+GGG 0.518289 1_4:-30258667 Msa0159620:CDS
TAATGTTGATTCGCTTTCAA+GGG 0.519008 1_4:-30260423 Msa0159620:CDS
CAAGCTGTCCTTGCCAGTAA+AGG 0.519378 1_4:+30256787 None:intergenic
GAATTCTTCGAGTTGGGAGG+AGG 0.521064 1_4:+30260613 None:intergenic
CTATCACTACCATTCTGCAT+AGG 0.521697 1_4:+30258296 None:intergenic
CGTGTTTACTCTTTGGTTCG+CGG 0.522992 1_4:-30260521 Msa0159620:CDS
ATGGTTGAAAAGACATCAAC+TGG 0.523260 1_4:-30256874 Msa0159620:CDS
CTCCCAATTCCACGAATGCA+CGG 0.524686 1_4:+30259429 None:intergenic
GTAATGGTACTTTGTGGAGC+AGG 0.525548 1_4:+30259138 None:intergenic
GTGCGAGGGAAGATGAAGGT+TGG 0.526514 1_4:+30260728 None:intergenic
ATACAATTCTCTTGTTGATG+AGG 0.528194 1_4:-30258127 Msa0159620:CDS
CTGCTATGATTTCTGGAGTA+GGG 0.530319 1_4:+30256599 None:intergenic
ACGCACTAAACAAGCTATGT+TGG 0.530440 1_4:-30258735 Msa0159620:CDS
CACTATTGGTGCTGAAAATG+TGG 0.530665 1_4:-30258945 Msa0159620:CDS
GATAGTAGTGTGCCTGATGT+TGG 0.531226 1_4:-30258278 Msa0159620:CDS
CTTCGAGTTGGGAGGAGGAG+AGG 0.531303 1_4:+30260618 None:intergenic
ATCAACAGAAGATTGACAGC+AGG 0.531311 1_4:-30254318 Msa0159620:CDS
GCTGCTATGATTTCTGGAGT+AGG 0.532010 1_4:+30256598 None:intergenic
TAAATCAATCTTTGAAGCAG+TGG 0.533578 1_4:-30257799 Msa0159620:CDS
TCATTTCTCTATCAGGTGAA+AGG 0.533590 1_4:-30255236 Msa0159620:intron
TGGAGCCATGGAAGAGAGAG+AGG 0.534757 1_4:+30260748 None:intergenic
CAGAAGATTGACAGCAGGGA+AGG 0.535424 1_4:-30254313 Msa0159620:CDS
TATCACTACCATTCTGCATA+GGG 0.536682 1_4:+30258297 None:intergenic
CATTTCTCTATCAGGTGAAA+GGG 0.540050 1_4:-30255235 Msa0159620:intron
AGAGAGCTTGAGCCTTCAGA+AGG 0.543604 1_4:-30258440 Msa0159620:CDS
CCTTCCAATTTCCCTAACAA+TGG 0.544985 1_4:+30258994 None:intergenic
GGAACTTAAAACTTACATTG+AGG 0.545490 1_4:-30254416 Msa0159620:CDS
AGCTGCTAGATCTCCTGTGT+TGG 0.547805 1_4:+30257698 None:intergenic
TGTGTGGGAAGCGTACCGTT+GGG 0.550734 1_4:+30260800 None:intergenic
TCGTGTGCTTCAGGTGTGGG+GGG 0.550787 1_4:-30258666 Msa0159620:CDS
GTAATTGTTACAAGCACTGA+AGG 0.551040 1_4:-30253051 Msa0159620:CDS
GAGGAACACTCAGTTTCGAT+TGG 0.551052 1_4:-30258635 Msa0159620:CDS
GAAAACCTCTCTCTCTTCCA+TGG 0.553200 1_4:-30260753 Msa0159620:exon
TATAGAAGTATCTTGTAGGC+GGG 0.553527 1_4:+30255389 None:intergenic
GATGCAGAGGATTTCTCTGT+CGG 0.554207 1_4:+30260565 None:intergenic
TCATTGTCAGAACCTTCTGA+AGG 0.554412 1_4:+30258428 None:intergenic
AAGCGAGTACGAAGAACATT+CGG 0.554581 1_4:-30258760 Msa0159620:CDS
GTTGTTGTCGTCGTCTTCGG+AGG 0.555178 1_4:+30260679 None:intergenic
TAACCTGTTGTCTTAACCAT+GGG 0.555535 1_4:+30252913 None:intergenic
GGAGTCGTGTGCTTCAGGTG+TGG 0.555573 1_4:-30258670 Msa0159620:CDS
ATTGATTGAATCAGATCAAG+TGG 0.558340 1_4:-30252730 Msa0159620:CDS
TGATTGCACCTTCTGTGTAC+CGG 0.558744 1_4:+30256324 None:intergenic
TTGTTTCTTCCTGCTACTTG+CGG 0.559690 1_4:+30259453 None:intergenic
CATACTAAATGACATGATGA+AGG 0.560185 1_4:-30255328 Msa0159620:intron
GACGAATTCTTCGAGTTGGG+AGG 0.561426 1_4:+30260610 None:intergenic
TGCATGAAAACATACTGTGC+TGG 0.562212 1_4:+30257629 None:intergenic
GGACAGACAAATGGAAGCAC+TGG 0.562649 1_4:-30254844 Msa0159620:CDS
TCCCAATTCCACGAATGCAC+GGG 0.562709 1_4:+30259430 None:intergenic
TTGAAGCTGTTGAGCAGGAG+CGG 0.563892 1_4:-30258367 Msa0159620:CDS
ATAGTAGTGTGCCTGATGTT+GGG 0.563989 1_4:-30258277 Msa0159620:CDS
TGAGTTTATAGTTGGCACAC+TGG 0.565695 1_4:-30257673 Msa0159620:CDS
AGTTGCTGCTGGGAGATTGG+AGG 0.565849 1_4:-30258591 Msa0159620:CDS
TTCGATTGGTTTGTGGAACG+AGG 0.566074 1_4:-30258621 Msa0159620:CDS
AAGTTGATCCTTTACTGGCA+AGG 0.566127 1_4:-30256795 Msa0159620:CDS
AATAGGTTTAGTGGTGTCAC+AGG 0.567469 1_4:-30254807 Msa0159620:intron
GCCATCAATTGGACAAGTGT+AGG 0.570206 1_4:+30258176 None:intergenic
AAAGCACTAGACGATGCTTC+CGG 0.573137 1_4:+30252982 None:intergenic
AGATTCCAGCAATACTCCTA+AGG 0.574465 1_4:-30260291 Msa0159620:intron
CTTGTGAATCAGATGCATGA+TGG 0.574796 1_4:+30259096 None:intergenic
ATTAAAACAACCAATGTGAA+AGG 0.576043 1_4:-30252804 Msa0159620:CDS
ATTGGGAGCCACAAAGAGCT+CGG 0.577209 1_4:-30259414 Msa0159620:CDS
CTCTACAGATGTCAGACAGT+GGG 0.577605 1_4:-30254686 Msa0159620:intron
CTAACCTCTTGTCTTAACCA+TGG 0.577710 1_4:+30252689 None:intergenic
CAGACAAATGGAAGCACTGG+TGG 0.578868 1_4:-30254841 Msa0159620:CDS
GTTGGCACACTGGTCTCTAA+GGG 0.581531 1_4:-30257663 Msa0159620:CDS
TGCGTTGGATCTGGTCTGTG+TGG 0.582202 1_4:+30260784 None:intergenic
GCCGAAAAGAAGTATTCAGA+TGG 0.583200 1_4:-30259031 Msa0159620:CDS
TCTCCGAAAGATGTTGCCCC+TGG 0.583816 1_4:-30258069 Msa0159620:intron
TGGGAACTTGGAGCAGACTA+GGG 0.584083 1_4:-30258258 Msa0159620:CDS
GAGTTGGGAGGAGGAGAGGG+AGG 0.588726 1_4:+30260622 None:intergenic
CAGAAAGCCTCTCGATAGCA+AGG 0.588973 1_4:+30256764 None:intergenic
TCTAATTGCACTATTGCACT+AGG 0.589127 1_4:-30255468 Msa0159620:CDS
CGTCTTGGTCTTGGATGCAG+AGG 0.590940 1_4:+30260552 None:intergenic
ATCCTTATAAACAGAACTGA+GGG 0.592079 1_4:+30256558 None:intergenic
CCATTGTTAGGGAAATTGGA+AGG 0.592278 1_4:-30258994 Msa0159620:CDS
GACTGATACATTCATGTCAC+AGG 0.592694 1_4:-30258333 Msa0159620:CDS
GCGTTGGATCTGGTCTGTGT+GGG 0.594688 1_4:+30260785 None:intergenic
GATGCAATCCCTATGCAGAA+TGG 0.596545 1_4:-30258305 Msa0159620:CDS
TGTCGTGTAATGGTACTTTG+TGG 0.598438 1_4:+30259132 None:intergenic
TTGCCTCAAATGAAGCTACT+CGG 0.602139 1_4:+30258489 None:intergenic
AGCCTCAAGTGAAGCAACCA+AGG 0.602706 1_4:+30258235 None:intergenic
AAGAGAGAAAGGACATTGAG+AGG 0.603969 1_4:-30256378 Msa0159620:CDS
AGGTTGCGGAAGTTGCTGCT+GGG 0.606891 1_4:-30258601 Msa0159620:CDS
AGCACCGCGGCTTTGCTCTG+CGG 0.606959 1_4:+30256912 None:intergenic
GGCTCCGATTATGCGACAGA+GGG 0.607984 1_4:+30259159 None:intergenic
AAATTGATATCAACTAACAT+TGG 0.608940 1_4:-30258887 Msa0159620:CDS
AAAATCTAACGTGGATGGTG+AGG 0.611984 1_4:-30258405 Msa0159620:CDS
AGCATCAACCGGTACACAGA+AGG 0.612351 1_4:-30256332 Msa0159620:intron
CATAACAGAATCCTCTGACA+AGG 0.612594 1_4:+30254576 None:intergenic
TGATACTAGCTTCCCCAGCA+CGG 0.612979 1_4:+30258808 None:intergenic
CTATGAACATGCCTTGTCAG+AGG 0.613866 1_4:-30254587 Msa0159620:CDS
CAGCTTGCCTTGCTATCGAG+AGG 0.614048 1_4:-30256771 Msa0159620:CDS
CGCGAACCAAAGAGTAAACA+CGG 0.616453 1_4:+30260522 None:intergenic
TCACCCATGGTTAAGACAAG+AGG 0.616547 1_4:-30252693 Msa0159620:intron
TCTGTTTATAAGGATTGTGG+TGG 0.617980 1_4:-30256550 Msa0159620:CDS
CTTGCAACTGATTCCAACAC+AGG 0.619910 1_4:-30257711 Msa0159620:CDS
GAAAAGGAAATTGTTTCTGG+CGG 0.619917 1_4:-30256111 Msa0159620:CDS
AATGAAGCTACTCGGAGCTG+TGG 0.620295 1_4:+30258497 None:intergenic
TTGGACAAGTGTAGGCATTG+TGG 0.620424 1_4:+30258184 None:intergenic
TCGAGGTGTTGAAGAGTGCG+AGG 0.621611 1_4:+30260713 None:intergenic
AGAGGCTGCAAATCCTAACT+CGG 0.622462 1_4:+30256170 None:intergenic
TCAACAGAAGATTGACAGCA+GGG 0.622646 1_4:-30254317 Msa0159620:CDS
CAACTCGAAGAATTCGTCAA+AGG 0.623065 1_4:-30260605 Msa0159620:CDS
GAAGAACAGCGAGATTAGAA+CGG 0.624036 1_4:+30260450 None:intergenic
AAACACGGTCGAATACGTCT+TGG 0.624885 1_4:+30260537 None:intergenic
CTAACCTGTTGTCTTAACCA+TGG 0.626289 1_4:+30252912 None:intergenic
AGCTATCATTTACTGAAAAG+GGG 0.626387 1_4:-30254639 Msa0159620:CDS
GGTTCATCTGACCCTGACGA+AGG 0.627950 1_4:-30259340 Msa0159620:CDS
GTGCAATAGTGCAATTAGAA+CGG 0.629695 1_4:+30255472 None:intergenic
ATATAGAAGTATCTTGTAGG+CGG 0.631163 1_4:+30255388 None:intergenic
GTTAGGATTTGCAGCCTCTG+AGG 0.631609 1_4:-30256166 Msa0159620:CDS
ACTATTGGTGCTGAAAATGT+GGG 0.632026 1_4:-30258944 Msa0159620:CDS
ATGCTCTTGTAGCCGTGCTG+GGG 0.636717 1_4:-30258820 Msa0159620:CDS
GTTGGAATCTTTCAAAAGCG+CGG 0.642116 1_4:+30259192 None:intergenic
TATTGAAGTCCAATCACCCA+TGG 0.644418 1_4:-30252706 Msa0159620:CDS
GAATTTCGTAGTTAACCCAA+CGG 0.646181 1_4:-30260815 Msa0159620:five_prime_UTR
TATTGAAGTCCAGTCACCCA+TGG 0.647530 1_4:-30252929 Msa0159620:CDS
CGAGGTGTTGAAGAGTGCGA+GGG 0.649241 1_4:+30260714 None:intergenic
TCACCAAGAAAAGAGCTACT+CGG 0.649338 1_4:-30252535 Msa0159620:CDS
AATCCTTATAAACAGAACTG+AGG 0.650673 1_4:+30256557 None:intergenic
AAAGAGCTACTCGGTCTAGG+AGG 0.651168 1_4:-30252526 Msa0159620:CDS
TAAGACTCTCCACCAAAGTG+AGG 0.651984 1_4:+30258854 None:intergenic
TATATCTGTTAGGAAGAATG+CGG 0.652410 1_4:-30255370 Msa0159620:CDS
ACCACCGCAGAGCAAAGCCG+CGG 0.658231 1_4:-30256916 Msa0159620:CDS
GGGATGTTTCTGCTTACACA+AGG 0.662146 1_4:-30258691 Msa0159620:CDS
CAGCAACTGCATCAGCCATG+TGG 0.665325 1_4:+30259056 None:intergenic
GAGGCTTTCTGAAGATGACA+AGG 0.668391 1_4:-30256752 Msa0159620:CDS
AGGCTCCGATTATGCGACAG+AGG 0.669812 1_4:+30259158 None:intergenic
GCTTAAGCTTTCATTCAGAG+AGG 0.670002 1_4:+30252499 None:intergenic
AAGACAAGTAACCTTCGTCA+GGG 0.675567 1_4:+30259329 None:intergenic
ATCAAGTGCAGCATCCTCAG+AGG 0.679232 1_4:+30256152 None:intergenic
TAAGCTGAATAAGTTCCACA+TGG 0.680330 1_4:-30254383 Msa0159620:CDS
TGCTAATTATAGGAGCTCAA+CGG 0.680441 1_4:-30252607 Msa0159620:intron
TAGAACGGAGACTTTCAACA+AGG 0.683792 1_4:+30260465 None:intergenic
TCTCTACAGATGTCAGACAG+TGG 0.689804 1_4:-30254687 Msa0159620:intron
TAATTGTTACAAGCACTGAA+GGG 0.692138 1_4:-30253050 Msa0159620:CDS
TGCCAATTATAGGAGCTCAA+CGG 0.696052 1_4:-30252833 Msa0159620:intron
CATTACGATGAGAAGCAACA+CGG 0.700562 1_4:+30260360 None:intergenic
CTATTGGTGCTGAAAATGTG+GGG 0.727757 1_4:-30258943 Msa0159620:CDS
AAAGGACAGATAAAGCACCG+CGG 0.842697 1_4:+30256899 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTCTAATTTGTAATATTAT+AGG - chr1_4:30253084-30253103 Msa0159620:intron 10.0%
!!! TTTGTAATTTGTAATATTAT+AGG - chr1_4:30253286-30253305 Msa0159620:intron 10.0%
!!! TTGAAATTTTAAATATGATT+TGG - chr1_4:30256045-30256064 Msa0159620:CDS 10.0%
!! AAATTAAAGAAGAAAATAAA+AGG + chr1_4:30258804-30258823 None:intergenic 10.0%
!!! TTATATTTTAAATTGAAATC+AGG - chr1_4:30258822-30258841 Msa0159620:CDS 10.0%
!! AAATAGATATATTATATTTG+AGG - chr1_4:30259282-30259301 Msa0159620:intron 10.0%
!! AATAGATATATTATATTTGA+GGG - chr1_4:30259283-30259302 Msa0159620:intron 10.0%
!! ATAACGAAAAAGTAAATTAA+AGG + chr1_4:30253053-30253072 None:intergenic 15.0%
!!! AAAATTGATTTTGACATATT+TGG - chr1_4:30253232-30253251 Msa0159620:intron 15.0%
!! ACAAATTACAAAATTAATTG+TGG + chr1_4:30253278-30253297 None:intergenic 15.0%
!!! TATTATAGGTTTAAGATTTT+AGG - chr1_4:30253300-30253319 Msa0159620:intron 15.0%
!! TCATGTTTGTAAAAAAATAT+AGG + chr1_4:30255857-30255876 None:intergenic 15.0%
!! TTAAATATTTGATGTAAACA+AGG - chr1_4:30255984-30256003 Msa0159620:intron 15.0%
!! AAAATTTCAATTTGTAAACT+GGG + chr1_4:30256035-30256054 None:intergenic 15.0%
!! TAAAATTTCAATTTGTAAAC+TGG + chr1_4:30256036-30256055 None:intergenic 15.0%
!!! TATCTTATTTGAATTAGTAT+GGG - chr1_4:30256197-30256216 Msa0159620:intron 15.0%
!! AATAATAGTGTTAGAATATT+TGG - chr1_4:30256565-30256584 Msa0159620:CDS 15.0%
!! AACATCTTCATTTAATTATA+AGG + chr1_4:30257712-30257731 None:intergenic 15.0%
!! TCACAAAAGATAAAATTATA+AGG + chr1_4:30258168-30258187 None:intergenic 15.0%
!! ACTGTTTGTATTTAAAAAAA+GGG + chr1_4:30258510-30258529 None:intergenic 15.0%
!! AACTGTTTGTATTTAAAAAA+AGG + chr1_4:30258511-30258530 None:intergenic 15.0%
!! ATAATATATCTATTTACAGT+TGG + chr1_4:30259277-30259296 None:intergenic 15.0%
!! ACATTGGAAAAAATTTATAA+TGG - chr1_4:30259914-30259933 Msa0159620:intron 15.0%
!! CATTGGAAAAAATTTATAAT+GGG - chr1_4:30259915-30259934 Msa0159620:intron 15.0%
!! ATTTGTAATATTATAGGTTC+AGG - chr1_4:30253090-30253109 Msa0159620:intron 20.0%
!!! AAATCAATTTTGTATACTTG+TGG - chr1_4:30253202-30253221 Msa0159620:intron 20.0%
!! AATTACAAAATTAATTGTGG+AGG + chr1_4:30253275-30253294 None:intergenic 20.0%
!!! TGTTTAGTTTTTGTTTCTAA+TGG - chr1_4:30253408-30253427 Msa0159620:intron 20.0%
!!! GTTTAGTTTTTGTTTCTAAT+GGG - chr1_4:30253409-30253428 Msa0159620:intron 20.0%
!!! TTTAGTTTTTGTTTCTAATG+GGG - chr1_4:30253410-30253429 Msa0159620:intron 20.0%
!! GTAAAGTGATTATTAATGTT+CGG + chr1_4:30253591-30253610 None:intergenic 20.0%
!!! ATAAACCTTGAATTACTTTT+TGG - chr1_4:30253919-30253938 Msa0159620:intron 20.0%
!! GTTAACAAACTTAAGAAAAA+AGG + chr1_4:30254001-30254020 None:intergenic 20.0%
!!! TTGATATCAATTTTGGAATA+CGG + chr1_4:30254386-30254405 None:intergenic 20.0%
!!! ATGTTAGTTGATATCAATTT+TGG + chr1_4:30254393-30254412 None:intergenic 20.0%
!! AAATTGATATCAACTAACAT+TGG - chr1_4:30254393-30254412 Msa0159620:CDS 20.0%
!! TGAAATTTATTCTTTCTTTC+TGG - chr1_4:30255425-30255444 Msa0159620:CDS 20.0%
!!! AAATTTTATACCCTAGAATT+AGG - chr1_4:30255720-30255739 Msa0159620:intron 20.0%
!!! CTATCTTATTTGAATTAGTA+TGG - chr1_4:30256196-30256215 Msa0159620:intron 20.0%
!!! AAGATAGTTCATTTTTATGA+AGG + chr1_4:30257298-30257317 None:intergenic 20.0%
!!! TTGTGATATTACATTTTTCA+AGG - chr1_4:30258182-30258201 Msa0159620:CDS 20.0%
!! GATAAAATATACCTTCTTAA+TGG + chr1_4:30258350-30258369 None:intergenic 20.0%
!! TGTTTGTATTTAAAAAAAGG+GGG + chr1_4:30258508-30258527 None:intergenic 20.0%
!! CTGTTTGTATTTAAAAAAAG+GGG + chr1_4:30258509-30258528 None:intergenic 20.0%
!!! TTTTAGAAACGTATTAAACA+AGG - chr1_4:30258732-30258751 Msa0159620:CDS 20.0%
!!! TCTTAAACTTTAAAATGTTC+CGG - chr1_4:30259050-30259069 Msa0159620:CDS 20.0%
!!! AATTTTTATCATCTAGCATA+TGG - chr1_4:30259327-30259346 Msa0159620:CDS 20.0%
!! TTAATAACGATTTATCATGT+AGG + chr1_4:30259949-30259968 None:intergenic 20.0%
!! ACATGATAAATCGTTATTAA+TGG - chr1_4:30259949-30259968 Msa0159620:intron 20.0%
!! AGAAAAAAATATGATGTTGA+GGG - chr1_4:30260097-30260116 Msa0159620:intron 20.0%
!! AAAATTGATTCTGACATGTT+TGG - chr1_4:30253435-30253454 Msa0159620:intron 25.0%
! ATGAACCAAAAAGTAATTCA+AGG + chr1_4:30253927-30253946 None:intergenic 25.0%
!! AAATTTTACTTGAGAGATGT+AGG - chr1_4:30254568-30254587 Msa0159620:CDS 25.0%
!! AATTTTACTTGAGAGATGTA+GGG - chr1_4:30254569-30254588 Msa0159620:CDS 25.0%
! TTAGACAATAGAAAGAACTA+CGG + chr1_4:30255241-30255260 None:intergenic 25.0%
!!! TCAATGTTTTATTCATGACA+AGG - chr1_4:30255293-30255312 Msa0159620:intron 25.0%
!!! TTCTAGGGTATAAAATTTAG+AGG + chr1_4:30255718-30255737 None:intergenic 25.0%
!! AGAAGTGTAAACTTGAAAAT+TGG + chr1_4:30255791-30255810 None:intergenic 25.0%
! ACACTTCTATATTTCATTTC+TGG - chr1_4:30255803-30255822 Msa0159620:intron 25.0%
! CACTTCTATATTTCATTTCT+GGG - chr1_4:30255804-30255823 Msa0159620:intron 25.0%
! ACTTCTATATTTCATTTCTG+GGG - chr1_4:30255805-30255824 Msa0159620:intron 25.0%
!! AATATGATTTGGAATGAGAT+TGG - chr1_4:30256056-30256075 Msa0159620:CDS 25.0%
! TTTCATGCTTACATATCATT+TGG - chr1_4:30256086-30256105 Msa0159620:CDS 25.0%
! TTACAAGACATCATTGATAT+TGG - chr1_4:30256445-30256464 Msa0159620:CDS 25.0%
! TACAAGACATCATTGATATT+GGG - chr1_4:30256446-30256465 Msa0159620:CDS 25.0%
! ATTCTCGATAGTTTAATTAC+TGG - chr1_4:30256589-30256608 Msa0159620:CDS 25.0%
!!! ATAGTTTAATTACTGGCTTT+TGG - chr1_4:30256596-30256615 Msa0159620:CDS 25.0%
!! AATATAGACCAATTGATTCA+TGG + chr1_4:30256842-30256861 None:intergenic 25.0%
! TTAGCTTATTAATGTGTTGT+AGG - chr1_4:30257072-30257091 Msa0159620:intron 25.0%
!!! TCAAAGCTTTGTAGAAATTT+TGG - chr1_4:30257235-30257254 Msa0159620:intron 25.0%
!!! ATAGTTCATTTTTATGAAGG+AGG + chr1_4:30257295-30257314 None:intergenic 25.0%
!! GTCTCACATACAATTTTAAA+AGG - chr1_4:30257449-30257468 Msa0159620:intron 25.0%
! CTTTATATATGATGCTTTCA+CGG - chr1_4:30257502-30257521 Msa0159620:intron 25.0%
! TATAAGGCATAGATAAACTA+GGG + chr1_4:30257696-30257715 None:intergenic 25.0%
! TTATAAGGCATAGATAAACT+AGG + chr1_4:30257697-30257716 None:intergenic 25.0%
! AAGATACTTCTATATCTGTT+AGG - chr1_4:30257900-30257919 Msa0159620:intron 25.0%
!! AAAGCACTACAAAATTGAAA+GGG + chr1_4:30258011-30258030 None:intergenic 25.0%
!! TAAAGCACTACAAAATTGAA+AGG + chr1_4:30258012-30258031 None:intergenic 25.0%
! TTATAAGGAAAAACCTTTCT+TGG + chr1_4:30258153-30258172 None:intergenic 25.0%
!!! GATATTACATTTTTCAAGGT+AGG - chr1_4:30258186-30258205 Msa0159620:CDS 25.0%
! TCAGGAAGCAAATTATATAT+TGG + chr1_4:30258253-30258272 None:intergenic 25.0%
! TTTAATTGCTTCCATTAAGA+AGG - chr1_4:30258336-30258355 Msa0159620:CDS 25.0%
! ATGAGCAGTTGTTATAAATA+AGG + chr1_4:30258551-30258570 None:intergenic 25.0%
! ATATAAAAAATGCACTCAAG+GGG + chr1_4:30259144-30259163 None:intergenic 25.0%
! GATATAAAAAATGCACTCAA+GGG + chr1_4:30259145-30259164 None:intergenic 25.0%
! GATATATTATATTTGAGGGT+AGG - chr1_4:30259287-30259306 Msa0159620:intron 25.0%
! TTTGTAATTAATCCTTCGAT+AGG + chr1_4:30259584-30259603 None:intergenic 25.0%
! TGATAGGAAGCTAATATTTA+TGG + chr1_4:30259709-30259728 None:intergenic 25.0%
! AATAATGTTCAAAAGTAGCT+TGG + chr1_4:30259766-30259785 None:intergenic 25.0%
!!! ATTTTTTCCAATGTCTTGTT+TGG + chr1_4:30259908-30259927 None:intergenic 25.0%
! TGATAAATCGTTATTAATGG+TGG - chr1_4:30259952-30259971 Msa0159620:intron 25.0%
! GAGAAAAAAATATGATGTTG+AGG - chr1_4:30260096-30260115 Msa0159620:intron 25.0%
! ACAAATGCTTTGTCTATAAA+TGG - chr1_4:30260253-30260272 Msa0159620:intron 25.0%
! ATTAAAACAACCAATGTGAA+AGG - chr1_4:30260476-30260495 Msa0159620:CDS 25.0%
AATTCAAATGAAAGTGGAAG+TGG + chr1_4:30252450-30252469 None:intergenic 30.0%
CTACGAAATTCAAATGAAAG+TGG + chr1_4:30252456-30252475 None:intergenic 30.0%
!! TAATGTTGATTCGCTTTCAA+GGG - chr1_4:30252857-30252876 Msa0159620:intron 30.0%
! TCAATTTTGTATACTTGTGG+AGG - chr1_4:30253205-30253224 Msa0159620:intron 30.0%
!! TAAGTTTGTTAACACTACAC+AGG - chr1_4:30254008-30254027 Msa0159620:intron 30.0%
! TCCATCTGAATACTTCTTTT+CGG + chr1_4:30254253-30254272 None:intergenic 30.0%
! GTGTCTTTGACATAATCTTT+TGG + chr1_4:30254318-30254337 None:intergenic 30.0%
GATTATGTCAAAGACACTAT+TGG - chr1_4:30254321-30254340 Msa0159620:CDS 30.0%
! AAAGCGTTTAAGGATATTGA+TGG - chr1_4:30254495-30254514 Msa0159620:intron 30.0%
TGACAATGAAAAATCTAACG+TGG - chr1_4:30254866-30254885 Msa0159620:intron 30.0%
AATGAAAAATCTAACGTGGA+TGG - chr1_4:30254870-30254889 Msa0159620:intron 30.0%
GAGATTCTCTAAATGTATAG+AGG - chr1_4:30255073-30255092 Msa0159620:intron 30.0%
ATACAATTCTCTTGTTGATG+AGG - chr1_4:30255153-30255172 Msa0159620:CDS 30.0%
TGTAAGCAATTCCAAATTGA+TGG - chr1_4:30255176-30255195 Msa0159620:CDS 30.0%
GTTCTTTCTATTGTCTAACA+AGG - chr1_4:30255243-30255262 Msa0159620:intron 30.0%
TTGTCTAACAAGGATATTCA+AGG - chr1_4:30255253-30255272 Msa0159620:intron 30.0%
!! ATGTTTTATTCATGACAAGG+TGG - chr1_4:30255296-30255315 Msa0159620:intron 30.0%
!! TAAATCAATCTTTGAAGCAG+TGG - chr1_4:30255481-30255500 Msa0159620:CDS 30.0%
CTTTCGGTACAATATACATA+AGG - chr1_4:30255510-30255529 Msa0159620:CDS 30.0%
ATACATAAGGAAAAACCCAA+TGG - chr1_4:30255523-30255542 Msa0159620:CDS 30.0%
ATTTGGCATTTGACATAACT+AGG + chr1_4:30255899-30255918 None:intergenic 30.0%
! TTACCATATGGATTGACATT+TGG + chr1_4:30255916-30255935 None:intergenic 30.0%
TAAACATAAAACGTGTACGT+TGG - chr1_4:30256139-30256158 Msa0159620:CDS 30.0%
AAACATAAAACGTGTACGTT+GGG - chr1_4:30256140-30256159 Msa0159620:CDS 30.0%
CAGCAAGAATTTATTGACAT+AGG + chr1_4:30256238-30256257 None:intergenic 30.0%
! GATTTCTTTTGCTTCAATGT+TGG - chr1_4:30256337-30256356 Msa0159620:CDS 30.0%
ATCCTTATAAACAGAACTGA+GGG + chr1_4:30256725-30256744 None:intergenic 30.0%
AATCCTTATAAACAGAACTG+AGG + chr1_4:30256726-30256745 None:intergenic 30.0%
AGTTCTGTTTATAAGGATTG+TGG - chr1_4:30256727-30256746 Msa0159620:CDS 30.0%
AATGATATAAATGCCGAGTT+AGG - chr1_4:30257097-30257116 Msa0159620:intron 30.0%
GATGTTTGAAAAAGCAGAAA+AGG - chr1_4:30257153-30257172 Msa0159620:intron 30.0%
! TCTACAAAGCTTTGACAAAA+AGG + chr1_4:30257230-30257249 None:intergenic 30.0%
!! TCATTTTTATGAAGGAGGAT+TGG + chr1_4:30257290-30257309 None:intergenic 30.0%
!!! TGGTATCTTTTTTGTCATCA+TGG - chr1_4:30257345-30257364 Msa0159620:intron 30.0%
!!! GGTATCTTTTTTGTCATCAT+GGG - chr1_4:30257346-30257365 Msa0159620:intron 30.0%
GTATAATGAGTGACTGTATA+TGG - chr1_4:30257368-30257387 Msa0159620:intron 30.0%
ACCATCACTTACATTTGAAA+TGG - chr1_4:30257393-30257412 Msa0159620:intron 30.0%
! CCATCACTTACATTTGAAAT+GGG - chr1_4:30257394-30257413 Msa0159620:intron 30.0%
AATTCTGGATACTGAAGAAA+TGG + chr1_4:30257573-30257592 None:intergenic 30.0%
TAAACTAGGGAGAGAAATTT+AGG + chr1_4:30257683-30257702 None:intergenic 30.0%
!! ATATAGAAGTATCTTGTAGG+CGG + chr1_4:30257895-30257914 None:intergenic 30.0%
!! CAGATATAGAAGTATCTTGT+AGG + chr1_4:30257898-30257917 None:intergenic 30.0%
TATATCTGTTAGGAAGAATG+CGG - chr1_4:30257910-30257929 Msa0159620:intron 30.0%
CATACTAAATGACATGATGA+AGG - chr1_4:30257952-30257971 Msa0159620:intron 30.0%
! GAAAGGGTACATTAATGAAA+TGG - chr1_4:30258061-30258080 Msa0159620:intron 30.0%
AGATGAGAGAATTTCAAATC+TGG - chr1_4:30258103-30258122 Msa0159620:CDS 30.0%
TTTCTTGAACTTTCCAAGAA+AGG - chr1_4:30258137-30258156 Msa0159620:CDS 30.0%
!!! TTACATTTTTCAAGGTAGGA+AGG - chr1_4:30258190-30258209 Msa0159620:CDS 30.0%
!! GATAATTTGCTAAGTATGTC+AGG + chr1_4:30258271-30258290 None:intergenic 30.0%
! TCTAGTTTCTTAAGTACTAC+AGG - chr1_4:30258415-30258434 Msa0159620:CDS 30.0%
AAGCTATGTAATAGGTTTAG+TGG - chr1_4:30258464-30258483 Msa0159620:CDS 30.0%
TCAGCTATCATTTACTGAAA+AGG - chr1_4:30258639-30258658 Msa0159620:CDS 30.0%
CAGCTATCATTTACTGAAAA+GGG - chr1_4:30258640-30258659 Msa0159620:CDS 30.0%
AGCTATCATTTACTGAAAAG+GGG - chr1_4:30258641-30258660 Msa0159620:CDS 30.0%
GCTCTTAAGTTATGTGAAAA+TGG - chr1_4:30258772-30258791 Msa0159620:CDS 30.0%
GGAACTTAAAACTTACATTG+AGG - chr1_4:30258864-30258883 Msa0159620:CDS 30.0%
!! AATCTTCTGTTGATGGATTT+GGG + chr1_4:30258956-30258975 None:intergenic 30.0%
GAAAGCAGAAACTATAAAAC+CGG + chr1_4:30259072-30259091 None:intergenic 30.0%
CGATATAAAAAATGCACTCA+AGG + chr1_4:30259146-30259165 None:intergenic 30.0%
! TTTATGCTTTTCACTTCTGT+TGG - chr1_4:30259216-30259235 Msa0159620:CDS 30.0%
! TTTTACAAACCAACGGAAAA+CGG - chr1_4:30259362-30259381 Msa0159620:CDS 30.0%
! TTTATGGAAGTGTGTGTTAA+GGG + chr1_4:30259693-30259712 None:intergenic 30.0%
! ATTTATGGAAGTGTGTGTTA+AGG + chr1_4:30259694-30259713 None:intergenic 30.0%
!! AGTATAAACAGCAAGTTGAT+AGG + chr1_4:30259725-30259744 None:intergenic 30.0%
TATACCTTCTTTCAGAATTG+TGG - chr1_4:30259795-30259814 Msa0159620:intron 30.0%
! AATACCACAATTCTGAAAGA+AGG + chr1_4:30259802-30259821 None:intergenic 30.0%
!!! ACTTGCACACATTTTTAAGT+AGG + chr1_4:30259860-30259879 None:intergenic 30.0%
ATTTGTCAGTACATTCTTGA+TGG + chr1_4:30259989-30260008 None:intergenic 30.0%
TTGATAAATTGTGTGTGGAT+TGG + chr1_4:30260013-30260032 None:intergenic 30.0%
! AATATGCTACATGATTTTGC+TGG - chr1_4:30260056-30260075 Msa0159620:intron 30.0%
! TGATGTTGAGGGATTTTATT+TGG - chr1_4:30260108-30260127 Msa0159620:intron 30.0%
!! TAATTGTTACAAGCACTGAA+GGG - chr1_4:30260230-30260249 Msa0159620:intron 30.0%
ATTGATTGAATCAGATCAAG+TGG - chr1_4:30260327-30260346 Msa0159620:CDS 30.0%
AGAGGTTAGAACTTTAAACA+AGG - chr1_4:30260605-30260624 Msa0159620:CDS 30.0%
GAGGTTAGAACTTTAAACAA+GGG - chr1_4:30260606-30260625 Msa0159620:CDS 30.0%
AACATGATGCTGCTAATTAT+AGG - chr1_4:30260663-30260682 Msa0159620:CDS 30.0%
!!! CACATTGGTTTTTTTAACTC+TGG + chr1_4:30260700-30260719 None:intergenic 30.0%
ACCAATGTGAAAGATGAAAA+TGG - chr1_4:30260711-30260730 Msa0159620:CDS 30.0%
! ACCATTTTCATCTTTCACAT+TGG + chr1_4:30260715-30260734 None:intergenic 30.0%
!! GCATCTTTGATTTGCAATAT+TGG - chr1_4:30260810-30260829 Msa0159620:five_prime_UTR 30.0%
GAATTTCGTAGTTAACCCAA+CGG - chr1_4:30252465-30252484 Msa0159620:CDS 35.0%
!!! AATGTTTGTAGGGTTTTGGA+CGG + chr1_4:30252637-30252656 None:intergenic 35.0%
! AGGAAATGTTTGTAGGGTTT+TGG + chr1_4:30252641-30252660 None:intergenic 35.0%
! TTTGACGAATTCTTCGAGTT+GGG + chr1_4:30252676-30252695 None:intergenic 35.0%
CTTGAAAGCGAATCAACATT+AGG + chr1_4:30252858-30252877 None:intergenic 35.0%
!! CTAATGTTGATTCGCTTTCA+AGG - chr1_4:30252856-30252875 Msa0159620:intron 35.0%
CAATACTCCTAAGGTATGTT+TGG - chr1_4:30252998-30253017 Msa0159620:CDS 35.0%
TAACGAACCAAACATACCTT+AGG + chr1_4:30253008-30253027 None:intergenic 35.0%
CAAGTAGAATCAATTGTGGA+AGG + chr1_4:30253486-30253505 None:intergenic 35.0%
GCTTCAAGTAGAATCAATTG+TGG + chr1_4:30253490-30253509 None:intergenic 35.0%
CTACTTGAAGCTAGAAAATG+AGG - chr1_4:30253499-30253518 Msa0159620:intron 35.0%
ATAATCACTTTACCTTCGAC+TGG - chr1_4:30253598-30253617 Msa0159620:intron 35.0%
ACCATGCTTCAAACTAAATG+GGG + chr1_4:30253785-30253804 None:intergenic 35.0%
CACCATGCTTCAAACTAAAT+GGG + chr1_4:30253786-30253805 None:intergenic 35.0%
ACACCATGCTTCAAACTAAA+TGG + chr1_4:30253787-30253806 None:intergenic 35.0%
AAATCTCATTGCAAGCTCAT+TGG - chr1_4:30253894-30253913 Msa0159620:intron 35.0%
GAATGCATTTCTACAACAAG+TGG + chr1_4:30254052-30254071 None:intergenic 35.0%
ACTTCCATTGTTAGGGAAAT+TGG - chr1_4:30254282-30254301 Msa0159620:CDS 35.0%
!! ACTATTGGTGCTGAAAATGT+GGG - chr1_4:30254336-30254355 Msa0159620:CDS 35.0%
! GTGGAGAGTCTTATAAGATT+AGG - chr1_4:30254436-30254455 Msa0159620:CDS 35.0%
!! GCTAGTATCAAAAGCGTTTA+AGG - chr1_4:30254485-30254504 Msa0159620:intron 35.0%
TATCACTACCATTCTGCATA+GGG + chr1_4:30254986-30255005 None:intergenic 35.0%
ATTCTTCTGAGCCATCAATT+TGG + chr1_4:30255190-30255209 None:intergenic 35.0%
TTATTCATGACAAGGTGGAA+TGG - chr1_4:30255301-30255320 Msa0159620:intron 35.0%
! CACAGTATGTTTTCATGCAT+CGG - chr1_4:30255655-30255674 Msa0159620:CDS 35.0%
CAGTCAGATTCCTAATTCTA+GGG + chr1_4:30255733-30255752 None:intergenic 35.0%
ACAGTCAGATTCCTAATTCT+AGG + chr1_4:30255734-30255753 None:intergenic 35.0%
! CTCAGTGCATTTATCTTTTC+AGG + chr1_4:30255764-30255783 None:intergenic 35.0%
CTGAAAAGATAAATGCACTG+AGG - chr1_4:30255762-30255781 Msa0159620:intron 35.0%
ATGCCAAATGTCAATCCATA+TGG - chr1_4:30255910-30255929 Msa0159620:intron 35.0%
! CACTGAACTGTTTTACCATA+TGG + chr1_4:30255928-30255947 None:intergenic 35.0%
CATATGGTAAAACAGTTCAG+TGG - chr1_4:30255926-30255945 Msa0159620:intron 35.0%
TGCTGTCATCATATTGAGTT+TGG - chr1_4:30256253-30256272 Msa0159620:intron 35.0%
!! TTGAGTTTGGTTCTCATCAT+TGG - chr1_4:30256266-30256285 Msa0159620:intron 35.0%
TATCGCAGATATCAGCTTTA+TGG - chr1_4:30256314-30256333 Msa0159620:intron 35.0%
! ATCGCAGATATCAGCTTTAT+GGG - chr1_4:30256315-30256334 Msa0159620:intron 35.0%
! TTCTTTTGCTTCAATGTTGG+TGG - chr1_4:30256340-30256359 Msa0159620:CDS 35.0%
! ATGTCTTTTCAACCATGCAA+AGG + chr1_4:30256402-30256421 None:intergenic 35.0%
ATGGTTGAAAAGACATCAAC+TGG - chr1_4:30256406-30256425 Msa0159620:CDS 35.0%
GACATCATTGATATTGGGTT+TGG - chr1_4:30256451-30256470 Msa0159620:CDS 35.0%
! GTCTAAAGTTGATCCTTTAC+TGG - chr1_4:30256480-30256499 Msa0159620:CDS 35.0%
AGATGACAAGGCAAAATTGT+TGG - chr1_4:30256540-30256559 Msa0159620:CDS 35.0%
! TTTGGCTTCCAGCAAATATT+TGG - chr1_4:30256614-30256633 Msa0159620:CDS 35.0%
ATCCCTCAGTTCTGTTTATA+AGG - chr1_4:30256720-30256739 Msa0159620:CDS 35.0%
TCTGTTTATAAGGATTGTGG+TGG - chr1_4:30256730-30256749 Msa0159620:CDS 35.0%
TCATACTGCCATGAATCAAT+TGG - chr1_4:30256831-30256850 Msa0159620:CDS 35.0%
GAAACTTGCAAAAGAGAGAA+AGG - chr1_4:30256891-30256910 Msa0159620:CDS 35.0%
GCAGAAAAGGAAATTGTTTC+TGG - chr1_4:30257166-30257185 Msa0159620:intron 35.0%
!! GAAAAGGAAATTGTTTCTGG+CGG - chr1_4:30257169-30257188 Msa0159620:intron 35.0%
TCAAAGGACAAGAATTTGGT+TGG - chr1_4:30257193-30257212 Msa0159620:intron 35.0%
! AAATTTTGGACTACTGCAGA+AGG - chr1_4:30257249-30257268 Msa0159620:intron 35.0%
! GTACTGATCTGTTCATGATT+TGG - chr1_4:30257325-30257344 Msa0159620:intron 35.0%
CCCATTTCAAATGTAAGTGA+TGG + chr1_4:30257397-30257416 None:intergenic 35.0%
TCTTCAGTATCCAGAATTAC+AGG - chr1_4:30257575-30257594 Msa0159620:intron 35.0%
! GGAGAGAAATTTAGGATAAG+AGG + chr1_4:30257675-30257694 None:intergenic 35.0%
GTGCAATAGTGCAATTAGAA+CGG + chr1_4:30257811-30257830 None:intergenic 35.0%
TCTAATTGCACTATTGCACT+AGG - chr1_4:30257812-30257831 Msa0159620:CDS 35.0%
!!! TTCCCAATCTTTTAGAACCA+TGG - chr1_4:30257852-30257871 Msa0159620:intron 35.0%
!! GTCCATGGTTCTAAAAGATT+GGG + chr1_4:30257857-30257876 None:intergenic 35.0%
!! AGTCCATGGTTCTAAAAGAT+TGG + chr1_4:30257858-30257877 None:intergenic 35.0%
!!! GCATACATTTTTTCAGTCCA+TGG + chr1_4:30257872-30257891 None:intergenic 35.0%
!! TATAGAAGTATCTTGTAGGC+GGG + chr1_4:30257894-30257913 None:intergenic 35.0%
TCATTTCTCTATCAGGTGAA+AGG - chr1_4:30258044-30258063 Msa0159620:intron 35.0%
CATTTCTCTATCAGGTGAAA+GGG - chr1_4:30258045-30258064 Msa0159620:intron 35.0%
!! GAAGGTATTTAATAGTCTCC+TGG - chr1_4:30258208-30258227 Msa0159620:CDS 35.0%
TGGTGGAAAAGCTATGTAAT+AGG - chr1_4:30258456-30258475 Msa0159620:CDS 35.0%
GGCAAAGAAGTTTGCAAAAT+TGG - chr1_4:30258843-30258862 Msa0159620:CDS 35.0%
TAAGCTGAATAAGTTCCACA+TGG - chr1_4:30258897-30258916 Msa0159620:CDS 35.0%
TAAGTTCCACATGGAAAAGA+AGG - chr1_4:30258906-30258925 Msa0159620:CDS 35.0%
!! CAATCTTCTGTTGATGGATT+TGG + chr1_4:30258957-30258976 None:intergenic 35.0%
ATTAGACTTCGAGTGATCTT+CGG + chr1_4:30259013-30259032 None:intergenic 35.0%
TCGAAGTCTAATACATCTTC+AGG - chr1_4:30259021-30259040 Msa0159620:CDS 35.0%
! CAGAAGTGAAAAGCATAAAC+AGG + chr1_4:30259215-30259234 None:intergenic 35.0%
TATATTTGAGGGTAGGTTTG+TGG - chr1_4:30259294-30259313 Msa0159620:intron 35.0%
!!! ATGCTGCTTTTACAAACCAA+CGG - chr1_4:30259355-30259374 Msa0159620:CDS 35.0%
! AAATGATAACCGTTTTCCGT+TGG + chr1_4:30259374-30259393 None:intergenic 35.0%
AGATTCTATCTCAAGTACTC+TGG + chr1_4:30259399-30259418 None:intergenic 35.0%
GTACTTGAGATAGAATCTAC+TGG - chr1_4:30259401-30259420 Msa0159620:CDS 35.0%
AACCCCATTTCATCATTCTT+TGG + chr1_4:30259436-30259455 None:intergenic 35.0%
CTCTGAATCTACTTGATTGA+AGG + chr1_4:30259467-30259486 None:intergenic 35.0%
GTAGATTCAGAGACTAAGAA+CGG - chr1_4:30259475-30259494 Msa0159620:intron 35.0%
! ACTCAGTCTTGTAAGTAGTA+AGG + chr1_4:30259526-30259545 None:intergenic 35.0%
ATCCTTCGATAGGAAGTTAA+GGG + chr1_4:30259574-30259593 None:intergenic 35.0%
AATCCTTCGATAGGAAGTTA+AGG + chr1_4:30259575-30259594 None:intergenic 35.0%
! TTATGGAAGTGTGTGTTAAG+GGG + chr1_4:30259692-30259711 None:intergenic 35.0%
CCTCTTTGATAAATTGTGTG+TGG + chr1_4:30260018-30260037 None:intergenic 35.0%
CCACACACAATTTATCAAAG+AGG - chr1_4:30260015-30260034 Msa0159620:intron 35.0%
GGTCATGTAGTTTCTCAATT+TGG - chr1_4:30260129-30260148 Msa0159620:intron 35.0%
! TTTTCTGCAGATGAAGTAGA+TGG - chr1_4:30260202-30260221 Msa0159620:intron 35.0%
!! GTAATTGTTACAAGCACTGA+AGG - chr1_4:30260229-30260248 Msa0159620:intron 35.0%
!! ATCAAGTTCTAAACCTGTAC+CGG - chr1_4:30260279-30260298 Msa0159620:intron 35.0%
TAACCTGTTGTCTTAACCAT+GGG + chr1_4:30260370-30260389 None:intergenic 35.0%
AAACATAGCTGTTGTGAATC+TGG - chr1_4:30260394-30260413 Msa0159620:CDS 35.0%
AACATGATGCTGCCAATTAT+AGG - chr1_4:30260437-30260456 Msa0159620:CDS 35.0%
!!! CACATTGGTTGTTTTAATCC+TGG + chr1_4:30260474-30260493 None:intergenic 35.0%
ACCAATGTGAAAGGTGAAAA+AGG - chr1_4:30260485-30260504 Msa0159620:CDS 35.0%
!! ACCTTTTTCACCTTTCACAT+TGG + chr1_4:30260489-30260508 None:intergenic 35.0%
CAAAACACTAGAAGATGCTT+TGG + chr1_4:30260525-30260544 None:intergenic 35.0%
TAACCTCTTGTCTTAACCAT+GGG + chr1_4:30260593-30260612 None:intergenic 35.0%
!! AAACAAGGGTTTTGTGAATC+TGG - chr1_4:30260620-30260639 Msa0159620:CDS 35.0%
TGCTAATTATAGGAGCTCAA+CGG - chr1_4:30260673-30260692 Msa0159620:CDS 35.0%
AGAGGGAGGAAATGTTTGTA+GGG + chr1_4:30252647-30252666 None:intergenic 40.0%
CTTTGACGAATTCTTCGAGT+TGG + chr1_4:30252677-30252696 None:intergenic 40.0%
CAACTCGAAGAATTCGTCAA+AGG - chr1_4:30252675-30252694 Msa0159620:intron 40.0%
ATTCGACCGTGTTTACTCTT+TGG - chr1_4:30252752-30252771 Msa0159620:CDS 40.0%
TAGAACGGAGACTTTCAACA+AGG + chr1_4:30252818-30252837 None:intergenic 40.0%
GAAGAACAGCGAGATTAGAA+CGG + chr1_4:30252833-30252852 None:intergenic 40.0%
CATTACGATGAGAAGCAACA+CGG + chr1_4:30252923-30252942 None:intergenic 40.0%
AGATTCCAGCAATACTCCTA+AGG - chr1_4:30252989-30253008 Msa0159620:CDS 40.0%
!! ACATACCTTAGGAGTATTGC+TGG + chr1_4:30252997-30253016 None:intergenic 40.0%
TATAGCTAAAAGCCAGTCGA+AGG + chr1_4:30253613-30253632 None:intergenic 40.0%
TTCGAACACATTGTTTCGAC+AGG - chr1_4:30253694-30253713 Msa0159620:intron 40.0%
!! TCCCCATTTAGTTTGAAGCA+TGG - chr1_4:30253781-30253800 Msa0159620:intron 40.0%
! GTTTGAAGCATGGTGTATTG+CGG - chr1_4:30253791-30253810 Msa0159620:intron 40.0%
! TTGTTTCTTCCTGCTACTTG+CGG + chr1_4:30253830-30253849 None:intergenic 40.0%
TTTAGTATCCGAGCTCTTTG+TGG + chr1_4:30253877-30253896 None:intergenic 40.0%
AAGACAAGTAACCTTCGTCA+GGG + chr1_4:30253954-30253973 None:intergenic 40.0%
AAAGACAAGTAACCTTCGTC+AGG + chr1_4:30253955-30253974 None:intergenic 40.0%
GCATTTCTACAACAAGTGGA+TGG + chr1_4:30254048-30254067 None:intergenic 40.0%
GTTGGAATCTTTCAAAAGCG+CGG + chr1_4:30254091-30254110 None:intergenic 40.0%
TGTCGTGTAATGGTACTTTG+TGG + chr1_4:30254151-30254170 None:intergenic 40.0%
CTTGTGAATCAGATGCATGA+TGG + chr1_4:30254187-30254206 None:intergenic 40.0%
!! TGATTTTGTTGTCGTCCACA+TGG - chr1_4:30254209-30254228 Msa0159620:intron 40.0%
!! GCCGAAAAGAAGTATTCAGA+TGG - chr1_4:30254249-30254268 Msa0159620:intron 40.0%
CCTTGCAACTTCCATTGTTA+GGG - chr1_4:30254275-30254294 Msa0159620:CDS 40.0%
CCTTCCAATTTCCCTAACAA+TGG + chr1_4:30254289-30254308 None:intergenic 40.0%
CCATTGTTAGGGAAATTGGA+AGG - chr1_4:30254286-30254305 Msa0159620:CDS 40.0%
!! CACTATTGGTGCTGAAAATG+TGG - chr1_4:30254335-30254354 Msa0159620:CDS 40.0%
!! CTATTGGTGCTGAAAATGTG+GGG - chr1_4:30254337-30254356 Msa0159620:CDS 40.0%
ATTCTTGTTCCTCACTTTGG+TGG - chr1_4:30254417-30254436 Msa0159620:CDS 40.0%
AAGCGAGTACGAAGAACATT+CGG - chr1_4:30254520-30254539 Msa0159620:intron 40.0%
ACGCACTAAACAAGCTATGT+TGG - chr1_4:30254545-30254564 Msa0159620:intron 40.0%
!! ACTCAGTTTCGATTGGTTTG+TGG - chr1_4:30254652-30254671 Msa0159620:CDS 40.0%
ATGTTGCAGCATAACCCATT+TGG - chr1_4:30254759-30254778 Msa0159620:intron 40.0%
TTGCCTCAAATGAAGCTACT+CGG + chr1_4:30254794-30254813 None:intergenic 40.0%
! AGCTTCATTTGAGGCAACTT+TGG - chr1_4:30254797-30254816 Msa0159620:intron 40.0%
AGGCAACTTTGGATCAGTAT+AGG - chr1_4:30254808-30254827 Msa0159620:CDS 40.0%
TCATTGTCAGAACCTTCTGA+AGG + chr1_4:30254855-30254874 None:intergenic 40.0%
AAAATCTAACGTGGATGGTG+AGG - chr1_4:30254875-30254894 Msa0159620:intron 40.0%
!!! GAATTTTGAAGCTGTTGAGC+AGG - chr1_4:30254908-30254927 Msa0159620:intron 40.0%
GACTGATACATTCATGTCAC+AGG - chr1_4:30254947-30254966 Msa0159620:CDS 40.0%
CTATCACTACCATTCTGCAT+AGG + chr1_4:30254987-30255006 None:intergenic 40.0%
ATAGTAGTGTGCCTGATGTT+GGG - chr1_4:30255003-30255022 Msa0159620:CDS 40.0%
CAGAAGATGATGCCATCAAT+TGG + chr1_4:30255118-30255137 None:intergenic 40.0%
!! ACACTGTCTGGTTAAGTTGA+TGG - chr1_4:30255346-30255365 Msa0159620:CDS 40.0%
! TTCTTTCTGGCATTTGCTCT+CGG - chr1_4:30255438-30255457 Msa0159620:CDS 40.0%
GATTCTTGGCAGTTTCCATT+GGG + chr1_4:30255541-30255560 None:intergenic 40.0%
AGATTCTTGGCAGTTTCCAT+TGG + chr1_4:30255542-30255561 None:intergenic 40.0%
TGCAAGACTCAAGAGATTCT+TGG + chr1_4:30255555-30255574 None:intergenic 40.0%
GCAGCTCTTGAGTTTATAGT+TGG - chr1_4:30255599-30255618 Msa0159620:intron 40.0%
TGAGTTTATAGTTGGCACAC+TGG - chr1_4:30255607-30255626 Msa0159620:intron 40.0%
TGCATGAAAACATACTGTGC+TGG + chr1_4:30255654-30255673 None:intergenic 40.0%
AGGACTCAGATTGTTTATGC+TGG - chr1_4:30256167-30256186 Msa0159620:CDS 40.0%
CAGATTGTTTATGCTGGCAA+TGG - chr1_4:30256173-30256192 Msa0159620:CDS 40.0%
AAAGCTGATATCTGCGATAG+TGG + chr1_4:30256313-30256332 None:intergenic 40.0%
TGCTTTATCTGTCCTTTGCA+TGG - chr1_4:30256387-30256406 Msa0159620:CDS 40.0%
! TTGATATTGGGTTTGGTCGT+TGG - chr1_4:30256458-30256477 Msa0159620:CDS 40.0%
! AAGTTGATCCTTTACTGGCA+AGG - chr1_4:30256485-30256504 Msa0159620:CDS 40.0%
GCTGCATACCAAATATTTGC+TGG + chr1_4:30256625-30256644 None:intergenic 40.0%
AGTAGGGTGAACAGCATAAA+TGG + chr1_4:30256668-30256687 None:intergenic 40.0%
!! CTGCTATGATTTCTGGAGTA+GGG + chr1_4:30256684-30256703 None:intergenic 40.0%
ATGTCAGCTGCTATGATTTC+TGG + chr1_4:30256691-30256710 None:intergenic 40.0%
TTTGCGACTTGAACTGTGAT+TGG + chr1_4:30256784-30256803 None:intergenic 40.0%
AAGAGAGAAAGGACATTGAG+AGG - chr1_4:30256902-30256921 Msa0159620:CDS 40.0%
TACTGCTGTTCTGTCATAGT+TGG - chr1_4:30256987-30257006 Msa0159620:intron 40.0%
!! AATTGTTTCTGGCGGTTCAA+AGG - chr1_4:30257177-30257196 Msa0159620:intron 40.0%
CGGTTCAAAGGACAAGAATT+TGG - chr1_4:30257189-30257208 Msa0159620:intron 40.0%
ATTGCAGAAGCCTGTAATTC+TGG + chr1_4:30257588-30257607 None:intergenic 40.0%
! TGGTCATTGATGCAGACTTT+TGG - chr1_4:30257628-30257647 Msa0159620:intron 40.0%
CACTAGGAGATTTAGCAGTA+AGG - chr1_4:30257828-30257847 Msa0159620:intron 40.0%
TGATGCGTCATTTCTCTATC+AGG - chr1_4:30258037-30258056 Msa0159620:intron 40.0%
TTGTTTCCTGTTGTAATGCC+AGG + chr1_4:30258229-30258248 None:intergenic 40.0%
TGCAGAAAGATTCATTGCTC+AGG + chr1_4:30258303-30258322 None:intergenic 40.0%
AGTACTACAGGACAGACAAA+TGG - chr1_4:30258427-30258446 Msa0159620:CDS 40.0%
!! AATAGGTTTAGTGGTGTCAC+AGG - chr1_4:30258473-30258492 Msa0159620:CDS 40.0%
CATAACAGAATCCTCTGACA+AGG + chr1_4:30258707-30258726 None:intergenic 40.0%
CTTGTCAGAGGATTCTGTTA+TGG - chr1_4:30258705-30258724 Msa0159620:CDS 40.0%
TGCTGTCAATCTTCTGTTGA+TGG + chr1_4:30258963-30258982 None:intergenic 40.0%
ATCAACAGAAGATTGACAGC+AGG - chr1_4:30258962-30258981 Msa0159620:CDS 40.0%
TCAACAGAAGATTGACAGCA+GGG - chr1_4:30258963-30258982 Msa0159620:CDS 40.0%
AAAAAATGCACTCAAGGGGA+AGG + chr1_4:30259140-30259159 None:intergenic 40.0%
! AGGGTAGGTTTGTGGTATTT+TGG - chr1_4:30259302-30259321 Msa0159620:intron 40.0%
GATAGAATCTACTGGTACGA+CGG - chr1_4:30259409-30259428 Msa0159620:CDS 40.0%
ATAGAATCTACTGGTACGAC+GGG - chr1_4:30259410-30259429 Msa0159620:CDS 40.0%
GGGCCAAAGAATGATGAAAT+GGG - chr1_4:30259430-30259449 Msa0159620:CDS 40.0%
GGCCAAAGAATGATGAAATG+GGG - chr1_4:30259431-30259450 Msa0159620:CDS 40.0%
TCCTTCGATAGGAAGTTAAG+GGG + chr1_4:30259573-30259592 None:intergenic 40.0%
! AAGTGTGTGTTAAGGGGTAT+TGG + chr1_4:30259686-30259705 None:intergenic 40.0%
CTAACCTGTTGTCTTAACCA+TGG + chr1_4:30260371-30260390 None:intergenic 40.0%
TGCCAATTATAGGAGCTCAA+CGG - chr1_4:30260447-30260466 Msa0159620:CDS 40.0%
TATTGAAGTCCAATCACCCA+TGG - chr1_4:30260574-30260593 Msa0159620:CDS 40.0%
TTGTCTTAACCATGGGTGAT+TGG + chr1_4:30260586-30260605 None:intergenic 40.0%
CTAACCTCTTGTCTTAACCA+TGG + chr1_4:30260594-30260613 None:intergenic 40.0%
TCACCAAGAAAAGAGCTACT+CGG - chr1_4:30260745-30260764 Msa0159620:exon 40.0%
GCTTAAGCTTTCATTCAGAG+AGG + chr1_4:30260784-30260803 None:intergenic 40.0%
! GGTTTTCTCTTCTGTTGCGT+TGG + chr1_4:30252514-30252533 None:intergenic 45.0%
GAAAACCTCTCTCTCTTCCA+TGG - chr1_4:30252527-30252546 Msa0159620:CDS 45.0%
! GTTGTTGTTGTCGTCGTCTT+CGG + chr1_4:30252607-30252626 None:intergenic 45.0%
GAGAGGGAGGAAATGTTTGT+AGG + chr1_4:30252648-30252667 None:intergenic 45.0%
GATGCAGAGGATTTCTCTGT+CGG + chr1_4:30252718-30252737 None:intergenic 45.0%
AAACACGGTCGAATACGTCT+TGG + chr1_4:30252746-30252765 None:intergenic 45.0%
CGCGAACCAAAGAGTAAACA+CGG + chr1_4:30252761-30252780 None:intergenic 45.0%
! CGTGTTTACTCTTTGGTTCG+CGG - chr1_4:30252759-30252778 Msa0159620:CDS 45.0%
AGTCAGCAGCGATTAAAGTC+TGG + chr1_4:30253164-30253183 None:intergenic 45.0%
! AAGCGCGGCATTTTCAAACA+TGG + chr1_4:30254076-30254095 None:intergenic 45.0%
!!! ACAGAGGGCATCTTTTGAGT+TGG + chr1_4:30254109-30254128 None:intergenic 45.0%
GTAATGGTACTTTGTGGAGC+AGG + chr1_4:30254145-30254164 None:intergenic 45.0%
CACTAGACTGTGTCGTGTAA+TGG + chr1_4:30254161-30254180 None:intergenic 45.0%
GCCTTGCAACTTCCATTGTT+AGG - chr1_4:30254274-30254293 Msa0159620:CDS 45.0%
CCCTAACAATGGAAGTTGCA+AGG + chr1_4:30254278-30254297 None:intergenic 45.0%
!! AAATGTGGGGCGTTTTCTAG+TGG - chr1_4:30254350-30254369 Msa0159620:CDS 45.0%
GGCATTCTTGTTCCTCACTT+TGG - chr1_4:30254414-30254433 Msa0159620:CDS 45.0%
TAAGACTCTCCACCAAAGTG+AGG + chr1_4:30254429-30254448 None:intergenic 45.0%
! GGGATGTTTCTGCTTACACA+AGG - chr1_4:30254589-30254608 Msa0159620:CDS 45.0%
GAGGAACACTCAGTTTCGAT+TGG - chr1_4:30254645-30254664 Msa0159620:CDS 45.0%
!! TTCGATTGGTTTGTGGAACG+AGG - chr1_4:30254659-30254678 Msa0159620:CDS 45.0%
GATGCAATCCCTATGCAGAA+TGG - chr1_4:30254975-30254994 Msa0159620:CDS 45.0%
GATAGTAGTGTGCCTGATGT+TGG - chr1_4:30255002-30255021 Msa0159620:CDS 45.0%
! TTGGACAAGTGTAGGCATTG+TGG + chr1_4:30255099-30255118 None:intergenic 45.0%
GCCTACACTTGTCCAATTGA+TGG - chr1_4:30255103-30255122 Msa0159620:intron 45.0%
GCCATCAATTGGACAAGTGT+AGG + chr1_4:30255107-30255126 None:intergenic 45.0%
TTACCAGGGGCAACATCTTT+CGG + chr1_4:30255217-30255236 None:intergenic 45.0%
AAAGAACTACGGCTTACCAG+GGG + chr1_4:30255230-30255249 None:intergenic 45.0%
GAAAGAACTACGGCTTACCA+GGG + chr1_4:30255231-30255250 None:intergenic 45.0%
AGAAAGAACTACGGCTTACC+AGG + chr1_4:30255232-30255251 None:intergenic 45.0%
TCCATGTAACTGACACTGTC+TGG - chr1_4:30255334-30255353 Msa0159620:CDS 45.0%
ACCAGACAGTGTCAGTTACA+TGG + chr1_4:30255338-30255357 None:intergenic 45.0%
! TCGGTTGTAGGCATTTTCTC+AGG - chr1_4:30255457-30255476 Msa0159620:CDS 45.0%
GAAGCAGTGGAGAATGCTTT+CGG - chr1_4:30255494-30255513 Msa0159620:CDS 45.0%
! CTTGCAACTGATTCCAACAC+AGG - chr1_4:30255569-30255588 Msa0159620:intron 45.0%
AAACGTGTACGTTGGGAAGT+AGG - chr1_4:30256147-30256166 Msa0159620:CDS 45.0%
!! AAAGGACAGATAAAGCACCG+CGG + chr1_4:30256384-30256403 None:intergenic 45.0%
AAGACATCAACTGGTGTGCT+TGG - chr1_4:30256415-30256434 Msa0159620:CDS 45.0%
! GAGGCTTTCTGAAGATGACA+AGG - chr1_4:30256528-30256547 Msa0159620:CDS 45.0%
!! GCTGCTATGATTTCTGGAGT+AGG + chr1_4:30256685-30256704 None:intergenic 45.0%
AGCAATGACACAGCATCAAC+CGG - chr1_4:30256937-30256956 Msa0159620:CDS 45.0%
TGATTGCACCTTCTGTGTAC+CGG + chr1_4:30256959-30256978 None:intergenic 45.0%
AGAGGCTGCAAATCCTAACT+CGG + chr1_4:30257113-30257132 None:intergenic 45.0%
!! GCTAGCTTTGTGTCGATTGA+TGG - chr1_4:30257608-30257627 Msa0159620:intron 45.0%
TCAGCTTCTCTTCACAGTTG+TGG - chr1_4:30257763-30257782 Msa0159620:CDS 45.0%
TGTTAGGAAGAATGCGGTTC+TGG - chr1_4:30257916-30257935 Msa0159620:intron 45.0%
TAGTCTCCTGGCATTACAAC+AGG - chr1_4:30258220-30258239 Msa0159620:CDS 45.0%
TTCATTGCTCAGGTTCTGCT+TGG + chr1_4:30258293-30258312 None:intergenic 45.0%
TCTCTACAGATGTCAGACAG+TGG - chr1_4:30258593-30258612 Msa0159620:CDS 45.0%
CTCTACAGATGTCAGACAGT+GGG - chr1_4:30258594-30258613 Msa0159620:CDS 45.0%
CTCTGACAAGGCATGTTCAT+AGG + chr1_4:30258695-30258714 None:intergenic 45.0%
CTATGAACATGCCTTGTCAG+AGG - chr1_4:30258693-30258712 Msa0159620:CDS 45.0%
! CCTGTTCCTTCTTTTCCATG+TGG + chr1_4:30258915-30258934 None:intergenic 45.0%
CCACATGGAAAAGAAGGAAC+AGG - chr1_4:30258912-30258931 Msa0159620:CDS 45.0%
CGGGCCAAAGAATGATGAAA+TGG - chr1_4:30259429-30259448 Msa0159620:CDS 45.0%
TCCCCTTAACTTCCTATCGA+AGG - chr1_4:30259569-30259588 Msa0159620:intron 45.0%
!! TGTTAAGGGGTATTGGCAAG+GGG + chr1_4:30259679-30259698 None:intergenic 45.0%
!! GTGTTAAGGGGTATTGGCAA+GGG + chr1_4:30259680-30259699 None:intergenic 45.0%
!! TGTGTTAAGGGGTATTGGCA+AGG + chr1_4:30259681-30259700 None:intergenic 45.0%
TGCTGCACCAAACAAGACAT+TGG - chr1_4:30259898-30259917 Msa0159620:intron 45.0%
! AAAGCACTAGACGATGCTTC+CGG + chr1_4:30260301-30260320 None:intergenic 45.0%
TATTGAAGTCCAGTCACCCA+TGG - chr1_4:30260351-30260370 Msa0159620:CDS 45.0%
TTGTCTTAACCATGGGTGAC+TGG + chr1_4:30260363-30260382 None:intergenic 45.0%
TCACCCATGGTTAAGACAAC+AGG - chr1_4:30260364-30260383 Msa0159620:CDS 45.0%
GACCGTTGAGCTCCTATAAT+TGG + chr1_4:30260452-30260471 None:intergenic 45.0%
TCACCCATGGTTAAGACAAG+AGG - chr1_4:30260587-30260606 Msa0159620:CDS 45.0%
! AGACCGAGTAGCTCTTTTCT+TGG + chr1_4:30260751-30260770 None:intergenic 45.0%
AGAAAAGAGCTACTCGGTCT+AGG - chr1_4:30260751-30260770 Msa0159620:exon 45.0%
CTCTTCTGTTGCGTTGGATC+TGG + chr1_4:30252508-30252527 None:intergenic 50.0%
GAAGATGAAGGTTGGAGCCA+TGG + chr1_4:30252547-30252566 None:intergenic 50.0%
! AAGAGTGCGAGGGAAGATGA+AGG + chr1_4:30252559-30252578 None:intergenic 50.0%
TTGTTGTCGTCGTCTTCGGA+GGG + chr1_4:30252603-30252622 None:intergenic 50.0%
!! GAATTCTTCGAGTTGGGAGG+AGG + chr1_4:30252670-30252689 None:intergenic 50.0%
!! GACGAATTCTTCGAGTTGGG+AGG + chr1_4:30252673-30252692 None:intergenic 50.0%
GGTCGAATACGTCTTGGTCT+TGG + chr1_4:30252740-30252759 None:intergenic 50.0%
GCATGGTGTATTGCGGTTTC+AGG - chr1_4:30253798-30253817 Msa0159620:intron 50.0%
TGGTGTATTGCGGTTTCAGG+TGG - chr1_4:30253801-30253820 Msa0159620:intron 50.0%
! TGTATTGCGGTTTCAGGTGG+TGG - chr1_4:30253804-30253823 Msa0159620:intron 50.0%
AGAAACAACCCGTGCATTCG+TGG - chr1_4:30253842-30253861 Msa0159620:intron 50.0%
AACCCGTGCATTCGTGGAAT+TGG - chr1_4:30253848-30253867 Msa0159620:intron 50.0%
ACCCGTGCATTCGTGGAATT+GGG - chr1_4:30253849-30253868 Msa0159620:intron 50.0%
TCCCAATTCCACGAATGCAC+GGG + chr1_4:30253853-30253872 None:intergenic 50.0%
CTCCCAATTCCACGAATGCA+CGG + chr1_4:30253854-30253873 None:intergenic 50.0%
ATTGGGAGCCACAAAGAGCT+CGG - chr1_4:30253866-30253885 Msa0159620:intron 50.0%
GATGCCCTCTGTCGCATAAT+CGG - chr1_4:30254117-30254136 Msa0159620:intron 50.0%
AATGCTCTTGTAGCCGTGCT+GGG - chr1_4:30254459-30254478 Msa0159620:intron 50.0%
! TGATACTAGCTTCCCCAGCA+CGG + chr1_4:30254475-30254494 None:intergenic 50.0%
! TGGTTTGTGGAACGAGGTTG+CGG - chr1_4:30254665-30254684 Msa0159620:CDS 50.0%
AATGAAGCTACTCGGAGCTG+TGG + chr1_4:30254786-30254805 None:intergenic 50.0%
GCTCCGAGTAGCTTCATTTG+AGG - chr1_4:30254788-30254807 Msa0159620:intron 50.0%
AGAGAGCTTGAGCCTTCAGA+AGG - chr1_4:30254840-30254859 Msa0159620:CDS 50.0%
TTGAAGCTGTTGAGCAGGAG+CGG - chr1_4:30254913-30254932 Msa0159620:intron 50.0%
TGTGCCTGATGTTGGGAACT+TGG - chr1_4:30255010-30255029 Msa0159620:CDS 50.0%
TGCTCCAAGTTCCCAACATC+AGG + chr1_4:30255017-30255036 None:intergenic 50.0%
TTGGGAACTTGGAGCAGACT+AGG - chr1_4:30255021-30255040 Msa0159620:CDS 50.0%
TGGGAACTTGGAGCAGACTA+GGG - chr1_4:30255022-30255041 Msa0159620:CDS 50.0%
AGCCTCAAGTGAAGCAACCA+AGG + chr1_4:30255048-30255067 None:intergenic 50.0%
TTGGTTGCTTCACTTGAGGC+TGG - chr1_4:30255047-30255066 Msa0159620:intron 50.0%
TGGCATTTGCTCTCGGTTGT+AGG - chr1_4:30255445-30255464 Msa0159620:CDS 50.0%
AGCTGCTAGATCTCCTGTGT+TGG + chr1_4:30255585-30255604 None:intergenic 50.0%
! AGTTGGCACACTGGTCTCTA+AGG - chr1_4:30255616-30255635 Msa0159620:intron 50.0%
! GTTGGCACACTGGTCTCTAA+GGG - chr1_4:30255617-30255636 Msa0159620:intron 50.0%
CAAGCTGTCCTTGCCAGTAA+AGG + chr1_4:30256496-30256515 None:intergenic 50.0%
CAGAAAGCCTCTCGATAGCA+AGG + chr1_4:30256519-30256538 None:intergenic 50.0%
AGCATCAACCGGTACACAGA+AGG - chr1_4:30256948-30256967 Msa0159620:CDS 50.0%
GTTAGGATTTGCAGCCTCTG+AGG - chr1_4:30257114-30257133 Msa0159620:intron 50.0%
ATCAAGTGCAGCATCCTCAG+AGG + chr1_4:30257131-30257150 None:intergenic 50.0%
! GGACAGACAAATGGAAGCAC+TGG - chr1_4:30258436-30258455 Msa0159620:CDS 50.0%
!! CAGACAAATGGAAGCACTGG+TGG - chr1_4:30258439-30258458 Msa0159620:CDS 50.0%
CAGAAGATTGACAGCAGGGA+AGG - chr1_4:30258967-30258986 Msa0159620:CDS 50.0%
AGGGGAAGGATTGCTATCAC+AGG + chr1_4:30259126-30259145 None:intergenic 50.0%
GGGGAGCTAGTTAGCTAGTT+GGG + chr1_4:30259554-30259573 None:intergenic 50.0%
AGGGGAGCTAGTTAGCTAGT+TGG + chr1_4:30259555-30259574 None:intergenic 50.0%
AGGGTGTGGGTAACTGATTG+GGG + chr1_4:30259645-30259664 None:intergenic 50.0%
! GAGGGTGTGGGTAACTGATT+GGG + chr1_4:30259646-30259665 None:intergenic 50.0%
!! GTTAAGGGGTATTGGCAAGG+GGG + chr1_4:30259678-30259697 None:intergenic 50.0%
TTATAGGAGCTCAACGGTCC+AGG - chr1_4:30260453-30260472 Msa0159620:CDS 50.0%
AAAGAGCTACTCGGTCTAGG+AGG - chr1_4:30260754-30260773 Msa0159620:exon 50.0%
! TGTGTGGGAAGCGTACCGTT+GGG + chr1_4:30252483-30252502 None:intergenic 55.0%
GCGTTGGATCTGGTCTGTGT+GGG + chr1_4:30252498-30252517 None:intergenic 55.0%
TGCGTTGGATCTGGTCTGTG+TGG + chr1_4:30252499-30252518 None:intergenic 55.0%
TGGAGCCATGGAAGAGAGAG+AGG + chr1_4:30252535-30252554 None:intergenic 55.0%
GTGCGAGGGAAGATGAAGGT+TGG + chr1_4:30252555-30252574 None:intergenic 55.0%
!! CGAGGTGTTGAAGAGTGCGA+GGG + chr1_4:30252569-30252588 None:intergenic 55.0%
!! TCGAGGTGTTGAAGAGTGCG+AGG + chr1_4:30252570-30252589 None:intergenic 55.0%
CGGAGGGTGAATCTTGTTCG+AGG + chr1_4:30252587-30252606 None:intergenic 55.0%
GTTGTTGTCGTCGTCTTCGG+AGG + chr1_4:30252604-30252623 None:intergenic 55.0%
!! TTCGAGTTGGGAGGAGGAGA+GGG + chr1_4:30252664-30252683 None:intergenic 55.0%
!! CGTCTTGGTCTTGGATGCAG+AGG + chr1_4:30252731-30252750 None:intergenic 55.0%
GGTTCATCTGACCCTGACGA+AGG - chr1_4:30253940-30253959 Msa0159620:intron 55.0%
GGCTCCGATTATGCGACAGA+GGG + chr1_4:30254124-30254143 None:intergenic 55.0%
AGGCTCCGATTATGCGACAG+AGG + chr1_4:30254125-30254144 None:intergenic 55.0%
CAGCAACTGCATCAGCCATG+TGG + chr1_4:30254227-30254246 None:intergenic 55.0%
CACATGGCTGATGCAGTTGC+TGG - chr1_4:30254225-30254244 Msa0159620:intron 55.0%
GAATGCTCTTGTAGCCGTGC+TGG - chr1_4:30254458-30254477 Msa0159620:intron 55.0%
ATGCTCTTGTAGCCGTGCTG+GGG - chr1_4:30254460-30254479 Msa0159620:intron 55.0%
CACAAGGAGTCGTGTGCTTC+AGG - chr1_4:30254605-30254624 Msa0159620:CDS 55.0%
GAGTCGTGTGCTTCAGGTGT+GGG - chr1_4:30254611-30254630 Msa0159620:CDS 55.0%
AGTCGTGTGCTTCAGGTGTG+GGG - chr1_4:30254612-30254631 Msa0159620:CDS 55.0%
AGGTTGCGGAAGTTGCTGCT+GGG - chr1_4:30254679-30254698 Msa0159620:CDS 55.0%
GGAAGTTGCTGCTGGGAGAT+TGG - chr1_4:30254686-30254705 Msa0159620:intron 55.0%
AGTTGCTGCTGGGAGATTGG+AGG - chr1_4:30254689-30254708 Msa0159620:intron 55.0%
CTCGGAGCTGTGGACCAAAT+GGG + chr1_4:30254776-30254795 None:intergenic 55.0%
ACTCGGAGCTGTGGACCAAA+TGG + chr1_4:30254777-30254796 None:intergenic 55.0%
GGCCTTGGTTGCTTCACTTG+AGG - chr1_4:30255043-30255062 Msa0159620:intron 55.0%
TCTCCGAAAGATGTTGCCCC+TGG - chr1_4:30255211-30255230 Msa0159620:CDS 55.0%
! CAGCTTGCCTTGCTATCGAG+AGG - chr1_4:30256509-30256528 Msa0159620:CDS 55.0%
GGTGTGGGTAACTGATTGGG+GGG + chr1_4:30259643-30259662 None:intergenic 55.0%
GGGTGTGGGTAACTGATTGG+GGG + chr1_4:30259644-30259663 None:intergenic 55.0%
! GGAGGGTGTGGGTAACTGAT+TGG + chr1_4:30259647-30259666 None:intergenic 55.0%
CTAGACGATGCTTCCGGTAC+AGG + chr1_4:30260295-30260314 None:intergenic 55.0%
! CTGTGTGGGAAGCGTACCGT+TGG + chr1_4:30252484-30252503 None:intergenic 60.0%
!! CTTCGAGTTGGGAGGAGGAG+AGG + chr1_4:30252665-30252684 None:intergenic 60.0%
GGAGTCGTGTGCTTCAGGTG+TGG - chr1_4:30254610-30254629 Msa0159620:CDS 60.0%
GTCGTGTGCTTCAGGTGTGG+GGG - chr1_4:30254613-30254632 Msa0159620:CDS 60.0%
TCGTGTGCTTCAGGTGTGGG+GGG - chr1_4:30254614-30254633 Msa0159620:CDS 60.0%
GGTGTGGGGGGAGTTATGTG+AGG - chr1_4:30254626-30254645 Msa0159620:CDS 60.0%
GAGGTTGCGGAAGTTGCTGC+TGG - chr1_4:30254678-30254697 Msa0159620:CDS 60.0%
CTTGGAGCAGACTAGGGCCT+TGG - chr1_4:30255028-30255047 Msa0159620:CDS 60.0%
ATTGGCAAGGGGGTGGAGGT+GGG + chr1_4:30259668-30259687 None:intergenic 60.0%
TATTGGCAAGGGGGTGGAGG+TGG + chr1_4:30259669-30259688 None:intergenic 60.0%
!! AAGGGGTATTGGCAAGGGGG+TGG + chr1_4:30259675-30259694 None:intergenic 60.0%
GAGTTGGGAGGAGGAGAGGG+AGG + chr1_4:30252661-30252680 None:intergenic 65.0%
! AGGTGGTGGCCGCAAGTAGC+AGG - chr1_4:30253818-30253837 Msa0159620:intron 65.0%
ACCACCGCAGAGCAAAGCCG+CGG - chr1_4:30256364-30256383 Msa0159620:CDS 65.0%
AGCACCGCGGCTTTGCTCTG+CGG + chr1_4:30256371-30256390 None:intergenic 65.0%
!! GGGTATTGGCAAGGGGGTGG+AGG + chr1_4:30259672-30259691 None:intergenic 65.0%
ACCGCGGCTTTGCTCTGCGG+TGG + chr1_4:30256368-30256387 None:intergenic 70.0%
! GGGTGGAGGTGGGAGGGTGT+GGG + chr1_4:30259658-30259677 None:intergenic 70.0%
GCAAGGGGGTGGAGGTGGGA+GGG + chr1_4:30259664-30259683 None:intergenic 70.0%
GGGGTGGAGGTGGGAGGGTG+TGG + chr1_4:30259659-30259678 None:intergenic 75.0%
GGCAAGGGGGTGGAGGTGGG+AGG + chr1_4:30259665-30259684 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 30252447 30260855 30252447 ID=Msa0159620;Name=Msa0159620
chr1_4 mRNA 30252447 30260855 30252447 ID=Msa0159620-mRNA-1;Parent=Msa0159620;Name=Msa0159620-mRNA-1;_AED=0.04;_eAED=0.04;_QI=99|1|1|1|1|1|16|16|1403
chr1_4 exon 30252447 30252617 30252447 ID=Msa0159620-mRNA-1:exon:9752;Parent=Msa0159620-mRNA-1
chr1_4 exon 30252694 30252843 30252694 ID=Msa0159620-mRNA-1:exon:9751;Parent=Msa0159620-mRNA-1
chr1_4 exon 30252917 30253090 30252917 ID=Msa0159620-mRNA-1:exon:9750;Parent=Msa0159620-mRNA-1
chr1_4 exon 30254260 30254458 30254260 ID=Msa0159620-mRNA-1:exon:9749;Parent=Msa0159620-mRNA-1
chr1_4 exon 30254549 30254700 30254549 ID=Msa0159620-mRNA-1:exon:9748;Parent=Msa0159620-mRNA-1
chr1_4 exon 30254808 30254865 30254808 ID=Msa0159620-mRNA-1:exon:9747;Parent=Msa0159620-mRNA-1
chr1_4 exon 30254945 30255060 30254945 ID=Msa0159620-mRNA-1:exon:9746;Parent=Msa0159620-mRNA-1
chr1_4 exon 30255144 30255243 30255144 ID=Msa0159620-mRNA-1:exon:9745;Parent=Msa0159620-mRNA-1
chr1_4 exon 30255329 30255551 30255329 ID=Msa0159620-mRNA-1:exon:9744;Parent=Msa0159620-mRNA-1
chr1_4 exon 30255653 30255720 30255653 ID=Msa0159620-mRNA-1:exon:9743;Parent=Msa0159620-mRNA-1
chr1_4 exon 30256032 30256208 30256032 ID=Msa0159620-mRNA-1:exon:9742;Parent=Msa0159620-mRNA-1
chr1_4 exon 30256333 30256980 30256333 ID=Msa0159620-mRNA-1:exon:9741;Parent=Msa0159620-mRNA-1
chr1_4 exon 30257644 30257835 30257644 ID=Msa0159620-mRNA-1:exon:9740;Parent=Msa0159620-mRNA-1
chr1_4 exon 30258070 30259240 30258070 ID=Msa0159620-mRNA-1:exon:9739;Parent=Msa0159620-mRNA-1
chr1_4 exon 30259319 30259482 30259319 ID=Msa0159620-mRNA-1:exon:9738;Parent=Msa0159620-mRNA-1
chr1_4 exon 30260292 30260855 30260292 ID=Msa0159620-mRNA-1:exon:9737;Parent=Msa0159620-mRNA-1
chr1_4 five_prime_UTR 30260757 30260855 30260757 ID=Msa0159620-mRNA-1:five_prime_utr;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30260292 30260756 30260292 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30259319 30259482 30259319 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30258070 30259240 30258070 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30257644 30257835 30257644 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30256333 30256980 30256333 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30256032 30256208 30256032 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30255653 30255720 30255653 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30255329 30255551 30255329 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30255144 30255243 30255144 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30254945 30255060 30254945 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30254808 30254865 30254808 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30254549 30254700 30254549 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30254260 30254458 30254260 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30252917 30253090 30252917 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30252694 30252843 30252694 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 CDS 30252463 30252617 30252463 ID=Msa0159620-mRNA-1:cds;Parent=Msa0159620-mRNA-1
chr1_4 three_prime_UTR 30252447 30252462 30252447 ID=Msa0159620-mRNA-1:three_prime_utr;Parent=Msa0159620-mRNA-1
Gene Sequence

>Msa0159620

ATGGCTCCAACCTTCATCTTCCCTCGCACTCTTCAACACCTCGAACAAGATTCACCCTCCGAAGACGACGACAACAACAACAATCTCTCCGTCCAAAACCCTACAAACATTTCCTCCCTCTCCTCCTCCCAACTCGAAGAATTCGTCAAAGGCGTCTCATTCGATCTCTCCGACAGAGAAATCCTCTGCATCCAAGACCAAGACGTATTCGACCGTGTTTACTCTTTGGTTCGCGGTTACTCTTCTTTACATCATTCATGTAAACTCAACCTTGTTGAAAGTCTCCGTTCTAATCTCGCTGTTCTTCTTCCTAATGTTGATTCGCTTTCAAGGGTTTCTAATGAAGATGTTGATGATCATGTTCTTGTTGTTGACCGTGTTGCTTCTCATCGTAATGCTTTTAAAATTTATACTTTCTTTCTTCTTAATATTGTTCTCGCTGAAGATTCCAGCAATACTCCTAAGGTGGTGGCCGCAAGTAGCAGGAAGAAACAACCCGTGCATTCGTGGAATTGGGAGCCACAAAGAGCTCGGATACTAAATCTCATTGCAAGCTCATTGGAGATAAACCTTGAATTACTTTTTGGTTCATCTGACCCTGACGAAGGTTACTTGTCTTTCATCACAAAAAATGCATTCGCCATGTTTGAAAATGCCGCGCTTTTGAAAGATTCCAACTCAAAAGATGCCCTCTGTCGCATAATCGGAGCCTGCTCCACAAAGTACCATTACACGACACAGTCTAGTGTATCCATCATGCATCTGATTCACAAGTATGATTTTGTTGTCGTCCACATGGCTGATGCAGTTGCTGGTGCCGAAAAGAAGTATTCAGATGGAAGCCTTGCAACTTCCATTGTTAGGGAAATTGGAAGGACTAATCCAAAAGATTATGTCAAAGACACTATTGGTGCTGAAAATGTGGGGCGTTTTCTAGTGGAGTTAGCTGACCGTATTCCAAAATTGATATCAACTAACATTGGCATTCTTGTTCCTCACTTTGGTGGAGAGTCTTATAAGATTAGGAATGCTCTTGTAGCCGTGCTGGGGAAGCTAGTATCAAAAGCGTTTAAGGATATTGATGGTGAAGCGAGTACGAAGAACATTCGGTTACGCACTAAACAAGCTATGTTGGAAATTTTACTTGAGAGATGTAGGGATGTTTCTGCTTACACAAGGAGTCGTGTGCTTCAGGTGTGGGGGGAGTTATGTGAGGAACACTCAGTTTCGATTGGTTTGTGGAACGAGGTTGCGGAAGTTGCTGCTGGGAGATTGGAGGACAAGAGTGCAATAGTCAGAAAATCTGCTTTGAATCTGTTGATCATGATGTTGCAGCATAACCCATTTGGTCCACAGCTCCGAGTAGCTTCATTTGAGGCAACTTTGGATCAGTATAGGAAGAAGTTGAGAGAGCTTGAGCCTTCAGAAGGTTCTGACAATGAAAAATCTAACGTGGATGGTGAGGTAGATGATTTGAATTTTGAAGCTGTTGAGCAGGAGCGGCAAGAGAGTGTGACTGATACATTCATGTCACAGGAAGAAGATGCAATCCCTATGCAGAATGGTAGTGATAGTAGTGTGCCTGATGTTGGGAACTTGGAGCAGACTAGGGCCTTGGTTGCTTCACTTGAGGCTGGTTTGAGATTCTCTAAATGTATAGAGGCCACAATGCCTACACTTGTCCAATTGATGGCATCATCTTCTGCTTCTGATGTTGAAAATACAATTCTCTTGTTGATGAGGTGTAAGCAATTCCAAATTGATGGCTCAGAAGAATGTCTCCGAAAGATGTTGCCCCTGGCATTTTCTCAGGATAAATCAATCTTTGAAGCAGTGGAGAATGCTTTCGGTACAATATACATAAGGAAAAACCCAATGGAAACTGCCAAGAATCTCTTGAGTCTTGCAACTGATTCCAACACAGGAGATCTAGCAGCTCTTGAGTTTATAGTTGGCACACTGGTCTCTAAGGGAGATATATCTTCCAGCACAATATCAGCTTTATGGGATTTCTTTTGCTTCAATGTTGGTGGAACCACCGCAGAGCAAAGCCGCGGTGCTTTATCTGTCCTTTGCATGGTTGAAAAGACATCAACTGGTGTGCTTGGCTCTCATTTACAAGACATCATTGATATTGGGTTTGGTCGTTGGTCTAAAGTTGATCCTTTACTGGCAAGGACAGCTTGCCTTGCTATCGAGAGGCTTTCTGAAGATGACAAGGCAAAATTGTTGGCAAATAATAGTGTTAGAATATTTGGCATTCTCGATAGTTTAATTACTGGCTTTTGGCTTCCAGCAAATATTTGGTATGCAGCTGCTGACAAAGCAATAACTGCCATTTATGCTGTTCACCCTACTCCAGAAATCATAGCAGCTGACATGATAAAGAAATCCCTCAGTTCTGTTTATAAGGATTGTGGTGGCAGTGACACTGACACTAGTAGCAGCATGCCAATCACAGTTCAAGTCGCAAAGCTGAGTAGATGTTTATTTGTCGTAAGTCATACTGCCATGAATCAATTGGTCTATATTGAATCATGTGCTCGTAAAATTCAGAAGCAGAAACTTGCAAAAGAGAGAAAGGACATTGAGAGGCAGAGCGCAGACAGCAATGACACAGCATCAACCGGTACACAGAAGGATAATGATATAAATGCCGAGTTAGGATTTGCAGCCTCTGAGGATGCTGCACTTGATGCGATGTTTGAAAAAGCAGAAAAGGAAATTGTTTCTGGCGGTTCAAAGGACAAGAATTTGGTTGGTATCTGTGCAACCTTTTTGTCAAAGCTTTGTAGAAATTTTGGACTACTGCAGAAGTATCCAGAATTACAGGCTTCTGCAATGCTAGCTTTGTGTCGATTGATGGTCATTGATGCAGACTTTTGTGATGCAAATCTTCAGCTTCTCTTCACAGTTGTGGAAAATGCACAGTCAGAAATTGTCCGTTCTAATTGCACTATTGCACTAGGAGATTTAGCAGTAAGGTTTCCCAATCTTTTAGAACCATGGACTGAAAAAATGTATGCCCGCCTACAAGATACTTCTATATCTGTTAGGAAGAATGCGGTTCTGGTGCTTTCTCATCTCATACTAAATGACATGATGAAGGTGAAAGGGTACATTAATGAAATGGCAGTTAGATTAGAAGATGAAGATGAGAGAATTTCAAATCTGGCTAAGCTGTTTTTTCTTGAACTTTCCAAGAAAGGAAACAATCCAATATATAATTTGCTTCCTGACATACTTAGCAAATTATCCAAGCAGAACCTGAGCAATGAATCTTTCTGCAACATCATGCAATTTTTAATTGCTTCCATTAAGAAGGACAGACAAATGGAAGCACTGGTGGAAAAGCTATGTAATAGGTTTAGTGGTGTCACAGATGTCAGACAGTGGGAGCATATATCTTATTGTCTATCTCAGCTATCATTTACTGAAAAGGGGATGAAAAAACTCATAGATTTATTTAAGACCTATGAACATGCCTTGTCAGAGGATTCTGTTATGGATAATTTTAGAAACGTATTAAACAAGGCAAAGAAGTTTGCAAAATTGGAACTTAAAACTTACATTGAGGAGTTTGAAGATAAGCTGAATAAGTTCCACATGGAAAAGAAGGAACAGGAAGTTACTGCTCGAAATGCCCAAATCCATCAACAGAAGATTGACAGCAGGGAAGGCTTTAATGTGAATAAAAATTCCGAAGATCACTCGAAGTCTAATACATCTTCAGATGAAGTAGATGGTGAAGTAATTGTTACAAGCACTGAAGGGACAAATGCTTTGTCTATAAATGGCAAATCAAGTTCTAAACCTGTACCGGAAGCATCGTCTAGTGCTTTGAGTGAATTGATTGAATCAGATCAAGTAGATATTGAAGTCCAGTCACCCATGGTTAAGACAACAGGAGCTCAACGGTCCAGGATTAAAACAACCAATGTGAAAGGTGAAAAAGGTGATATCTCTATCACCAAAGCATCTTCTAGTGTTTTGAGTGAATTGATTGAATCAGATCAAGTGGATATTGAAGTCCAATCACCCATGGTTAAGACAAGAGGAGCTCAACGGTCCAGAGTTAAAAAAACCAATGTGAAAGATGAAAATGGTGATATCTCTATCACCAAGAAAAGAGCTACTCGGTCTAGGAGGTATGCCTCTCTGAATGAAAGCTTAAGCGTTTATGCATCTTTGATTTGCAATATTGGATGCTAA
Protein sequence

>Msa0159620

MAPTFIFPRTLQHLEQDSPSEDDDNNNNLSVQNPTNISSLSSSQLEEFVKGVSFDLSDREILCIQDQDVFDRVYSLVRGYSSLHHSCKLNLVESLRSNLAVLLPNVDSLSRVSNEDVDDHVLVVDRVASHRNAFKIYTFFLLNIVLAEDSSNTPKVVAASSRKKQPVHSWNWEPQRARILNLIASSLEINLELLFGSSDPDEGYLSFITKNAFAMFENAALLKDSNSKDALCRIIGACSTKYHYTTQSSVSIMHLIHKYDFVVVHMADAVAGAEKKYSDGSLATSIVREIGRTNPKDYVKDTIGAENVGRFLVELADRIPKLISTNIGILVPHFGGESYKIRNALVAVLGKLVSKAFKDIDGEASTKNIRLRTKQAMLEILLERCRDVSAYTRSRVLQVWGELCEEHSVSIGLWNEVAEVAAGRLEDKSAIVRKSALNLLIMMLQHNPFGPQLRVASFEATLDQYRKKLRELEPSEGSDNEKSNVDGEVDDLNFEAVEQERQESVTDTFMSQEEDAIPMQNGSDSSVPDVGNLEQTRALVASLEAGLRFSKCIEATMPTLVQLMASSSASDVENTILLLMRCKQFQIDGSEECLRKMLPLAFSQDKSIFEAVENAFGTIYIRKNPMETAKNLLSLATDSNTGDLAALEFIVGTLVSKGDISSSTISALWDFFCFNVGGTTAEQSRGALSVLCMVEKTSTGVLGSHLQDIIDIGFGRWSKVDPLLARTACLAIERLSEDDKAKLLANNSVRIFGILDSLITGFWLPANIWYAAADKAITAIYAVHPTPEIIAADMIKKSLSSVYKDCGGSDTDTSSSMPITVQVAKLSRCLFVVSHTAMNQLVYIESCARKIQKQKLAKERKDIERQSADSNDTASTGTQKDNDINAELGFAASEDAALDAMFEKAEKEIVSGGSKDKNLVGICATFLSKLCRNFGLLQKYPELQASAMLALCRLMVIDADFCDANLQLLFTVVENAQSEIVRSNCTIALGDLAVRFPNLLEPWTEKMYARLQDTSISVRKNAVLVLSHLILNDMMKVKGYINEMAVRLEDEDERISNLAKLFFLELSKKGNNPIYNLLPDILSKLSKQNLSNESFCNIMQFLIASIKKDRQMEALVEKLCNRFSGVTDVRQWEHISYCLSQLSFTEKGMKKLIDLFKTYEHALSEDSVMDNFRNVLNKAKKFAKLELKTYIEEFEDKLNKFHMEKKEQEVTARNAQIHQQKIDSREGFNVNKNSEDHSKSNTSSDEVDGEVIVTSTEGTNALSINGKSSSKPVPEASSSALSELIESDQVDIEVQSPMVKTTGAQRSRIKTTNVKGEKGDISITKASSSVLSELIESDQVDIEVQSPMVKTRGAQRSRVKKTNVKDENGDISITKKRATRSRRYASLNESLSVYASLICNIGC*