Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364950 | XP_003604042.1 | 92.512 | 414 | 25 | 4 | 1 | 410 | 1 | 412 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364950 | sp|Q5EAW4|MCM10_XENLA | 30.049 | 203 | 137 | 4 | 63 | 261 | 221 | 422 | 2.19e-25 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364950 | G7J8I4 | 92.512 | 414 | 25 | 4 | 1 | 410 | 1 | 412 | 0.0 | 751 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020540 | Msa1364950 | 0.824255 | 8.913209e-54 | -8.615850e-47 |
| Msa1364950 | Msa1365500 | 0.815709 | 8.044479e-52 | -8.615850e-47 |
| Msa1364950 | Msa1366150 | 0.801823 | 7.508017e-49 | -8.615850e-47 |
| Msa1364950 | Msa1381470 | 0.812400 | 4.320296e-51 | -8.615850e-47 |
| Msa1364950 | Msa1387440 | 0.815008 | 1.152031e-51 | -8.615850e-47 |
| Msa1364950 | Msa1417580 | 0.946622 | 3.248596e-105 | -8.615850e-47 |
| Msa1364950 | Msa1435530 | 0.979862 | 6.580029e-149 | -8.615850e-47 |
| Msa1364950 | Msa1454010 | 0.802184 | 6.328417e-49 | -8.615850e-47 |
| Msa1364950 | Msa1459010 | 0.801387 | 9.223280e-49 | -8.615850e-47 |
| Msa1364950 | Msa1465360 | 0.838985 | 2.076115e-57 | -8.615850e-47 |
| Msa0607800 | Msa1364950 | 0.802500 | 5.448649e-49 | -8.615850e-47 |
| Msa0641990 | Msa1364950 | 0.809141 | 2.190887e-50 | -8.615850e-47 |
| Msa0648040 | Msa1364950 | 0.804066 | 2.582513e-49 | -8.615850e-47 |
| Msa0681050 | Msa1364950 | 0.828607 | 8.183132e-55 | -8.615850e-47 |
| Msa0709440 | Msa1364950 | 0.817428 | 3.314122e-52 | -8.615850e-47 |
| Msa0714790 | Msa1364950 | 0.808360 | 3.218622e-50 | -8.615850e-47 |
| Msa0720520 | Msa1364950 | 0.813651 | 2.297317e-51 | -8.615850e-47 |
| Msa0743440 | Msa1364950 | 0.807915 | 4.002561e-50 | -8.615850e-47 |
| Msa0756820 | Msa1364950 | 0.803941 | 2.740630e-49 | -8.615850e-47 |
| Msa0803350 | Msa1364950 | 0.832328 | 1.006644e-55 | -8.615850e-47 |
| Msa0841700 | Msa1364950 | 0.814042 | 1.883932e-51 | -8.615850e-47 |
| Msa0159590 | Msa1364950 | 0.824757 | 6.787560e-54 | -8.615850e-47 |
| Msa0159620 | Msa1364950 | 0.830178 | 3.399190e-55 | -8.615850e-47 |
| Msa0168050 | Msa1364950 | 0.815359 | 9.624414e-52 | -8.615850e-47 |
| Msa1300460 | Msa1364950 | 0.808026 | 3.791872e-50 | -8.615850e-47 |
| Msa1332950 | Msa1364950 | 0.809542 | 1.797174e-50 | -8.615850e-47 |
| Msa1338210 | Msa1364950 | 0.809610 | 1.737671e-50 | -8.615850e-47 |
| Msa0367150 | Msa1364950 | 0.816728 | 4.760873e-52 | -8.615850e-47 |
| Msa0373500 | Msa1364950 | 0.839095 | 1.945287e-57 | -8.615850e-47 |
| Msa0414880 | Msa1364950 | 0.803172 | 3.957720e-49 | -8.615850e-47 |
| Msa0454560 | Msa1364950 | 0.842513 | 2.470531e-58 | -8.615850e-47 |
| Msa0459740 | Msa1364950 | 0.820637 | 6.173066e-53 | -8.615850e-47 |
| Msa0462780 | Msa1364950 | 0.816097 | 6.590259e-52 | -8.615850e-47 |
| Msa0468620 | Msa1364950 | 0.843283 | 1.541509e-58 | -8.615850e-47 |
| Msa0481890 | Msa1364950 | 0.818039 | 2.413404e-52 | -8.615850e-47 |
| Msa0989370 | Msa1364950 | 0.827598 | 1.432121e-54 | -8.615850e-47 |
| Msa1084530 | Msa1364950 | 0.816217 | 6.195340e-52 | -8.615850e-47 |
| Msa0269210 | Msa1364950 | 0.803920 | 2.768257e-49 | -8.615850e-47 |
| Msa0343010 | Msa1364950 | 0.801417 | 9.094528e-49 | -8.615850e-47 |
| Msa1125820 | Msa1364950 | 0.818661 | 1.744592e-52 | -8.615850e-47 |
| Msa1125990 | Msa1364950 | 0.816223 | 6.178411e-52 | -8.615850e-47 |
| Msa1159590 | Msa1364950 | 0.800415 | 1.456722e-48 | -8.615850e-47 |
| Msa1171290 | Msa1364950 | 0.817594 | 3.041301e-52 | -8.615850e-47 |
| Msa1183740 | Msa1364950 | 0.818788 | 1.632612e-52 | -8.615850e-47 |
| Msa1201780 | Msa1364950 | 0.809317 | 2.008317e-50 | -8.615850e-47 |
| Msa1218820 | Msa1364950 | 0.833084 | 6.532514e-56 | -8.615850e-47 |
| Msa0502510 | Msa1364950 | 0.835193 | 1.934389e-56 | -8.615850e-47 |
| Msa0514500 | Msa1364950 | 0.843793 | 1.125775e-58 | -8.615850e-47 |
| Msa0521680 | Msa1364950 | 0.801334 | 9.456684e-49 | -8.615850e-47 |
| Msa0524280 | Msa1364950 | 0.962928 | 1.827610e-121 | -8.615850e-47 |
| Msa0524390 | Msa1364950 | 0.953568 | 2.059982e-111 | -8.615850e-47 |
| Msa0545920 | Msa1364950 | 0.823365 | 1.440931e-53 | -8.615850e-47 |
| Msa0593400 | Msa1364950 | 0.800265 | 1.562687e-48 | -8.615850e-47 |
| Msa0601720 | Msa1364950 | 0.826014 | 3.421307e-54 | -8.615850e-47 |
| Msa0879920 | Msa1364950 | 0.801055 | 1.078333e-48 | -8.615850e-47 |
| Msa0888790 | Msa1364950 | 0.828460 | 8.879006e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364950 | MtrunA17_Chr3g0145611 | 92.512 | 414 | 25 | 4 | 1 | 410 | 1 | 412 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1364950 | AT2G20980.1 | 50.620 | 403 | 166 | 9 | 17 | 409 | 17 | 396 | 4.03e-116 | 344 |
Find 136 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGATCATTTGGAGTCTT+TGG | 0.125778 | tig0018197:-22666 | None:intergenic |
| GGAGAAGCGGGAGGGGTTTC+AGG | 0.144299 | tig0018197:-20153 | None:intergenic |
| AGGGGTTTGGTAATGGATTT+AGG | 0.166281 | tig0018197:-20297 | None:intergenic |
| GAAATCATCTTCTGTTAATA+TGG | 0.187113 | tig0018197:+22807 | Msa1364950:CDS |
| AGGTGCCCATCTTCATAATT+TGG | 0.237873 | tig0018197:-20882 | None:intergenic |
| TGCTTTCTGCCATAAGTTAT+AGG | 0.239694 | tig0018197:-22085 | None:intergenic |
| TTGGTAATGGATTTAGGGTT+AGG | 0.247428 | tig0018197:-20291 | None:intergenic |
| AGTGAACCTTCGAAACTATA+TGG | 0.258865 | tig0018197:-23084 | None:intergenic |
| CATATGGAAAATTGGTTCTT+TGG | 0.260862 | tig0018197:+20633 | Msa1364950:CDS |
| TTTATTTCTCTTAGTTATAT+TGG | 0.272528 | tig0018197:+23158 | Msa1364950:three_prime_UTR |
| AGCTATTGCATATGGAAAAT+TGG | 0.275020 | tig0018197:+20625 | Msa1364950:CDS |
| CATCTTGCCTGTACTCTTTG+TGG | 0.306180 | tig0018197:-22908 | None:intergenic |
| GTAGATAACCTAGTAAAATT+TGG | 0.307826 | tig0018197:-23192 | None:intergenic |
| GAAACTTAAGAACAGCATTT+AGG | 0.310137 | tig0018197:+22249 | Msa1364950:intron |
| GGATTTAGGGTTAGGGTTAG+AGG | 0.317608 | tig0018197:-20283 | None:intergenic |
| CTCTTAGTTATATTGGTAGT+AGG | 0.320201 | tig0018197:+23165 | Msa1364950:three_prime_UTR |
| GTGCATTTGCTTTGATCATT+TGG | 0.328321 | tig0018197:-22675 | None:intergenic |
| ACCAGAGAATTTGTCAAGTT+GGG | 0.333949 | tig0018197:-20331 | None:intergenic |
| TCTGTGTATATTCAGGAATT+TGG | 0.341989 | tig0018197:+20516 | Msa1364950:intron |
| CCCATCTTCATAATTTGGTT+AGG | 0.353508 | tig0018197:-20877 | None:intergenic |
| AGATTTCTTTCTGAGATTGC+AGG | 0.358419 | tig0018197:+22516 | Msa1364950:CDS |
| GGGGTTTGGTAATGGATTTA+GGG | 0.358994 | tig0018197:-20296 | None:intergenic |
| ATCCACTAACCTATAACTTA+TGG | 0.367477 | tig0018197:+22076 | Msa1364950:CDS |
| AGGGTTAGGGTTAGAGGGTT+GGG | 0.369684 | tig0018197:-20277 | None:intergenic |
| GTGTATCAAAGAAAAGAAAA+AGG | 0.374356 | tig0018197:+20076 | Msa1364950:five_prime_UTR |
| GGGATCGTCGGTGAGGGGTT+TGG | 0.378542 | tig0018197:-20310 | None:intergenic |
| ATTCAGAAAACAAGTTCAAA+TGG | 0.379635 | tig0018197:+20598 | Msa1364950:CDS |
| AACTTATTATTTAAAACAGT+TGG | 0.380158 | tig0018197:+23333 | Msa1364950:three_prime_UTR |
| TGCCATAAGTTATAGGTTAG+TGG | 0.382941 | tig0018197:-22078 | None:intergenic |
| TTCTTTATTGTGCAGGACTT+TGG | 0.384179 | tig0018197:-23135 | None:intergenic |
| GTGAATGGAGATTCTTTCTC+TGG | 0.384793 | tig0018197:+20538 | Msa1364950:CDS |
| GTCGGTGAGGGGTTTGGTAA+TGG | 0.386273 | tig0018197:-20304 | None:intergenic |
| GAGATTCTTTCTCTGGAAGT+TGG | 0.388819 | tig0018197:+20545 | Msa1364950:CDS |
| TATCTACATTGTTATCAGTT+GGG | 0.389092 | tig0018197:+23208 | Msa1364950:three_prime_UTR |
| TGAATTAGATCTTATTAGTT+CGG | 0.393103 | tig0018197:+22933 | Msa1364950:CDS |
| GACCAGAGAATTTGTCAAGT+TGG | 0.402451 | tig0018197:-20332 | None:intergenic |
| GTCGTCAAACCACGAAGATC+TGG | 0.403762 | tig0018197:+20101 | Msa1364950:CDS |
| GTTTAACCCCTGCTGAGCTT+AGG | 0.407094 | tig0018197:+20373 | Msa1364950:CDS |
| GTCAATGAATATATCATTCA+AGG | 0.409842 | tig0018197:+23297 | Msa1364950:three_prime_UTR |
| CCATCTTCATAATTTGGTTA+GGG | 0.413959 | tig0018197:-20876 | None:intergenic |
| TCTGGAAGTTGGGTCACTGT+TGG | 0.427782 | tig0018197:+20556 | Msa1364950:CDS |
| TTTAACCCCTGCTGAGCTTA+GGG | 0.429241 | tig0018197:+20374 | Msa1364950:CDS |
| TTGAACGGCGTCTCTGAAAA+CGG | 0.430849 | tig0018197:-20241 | None:intergenic |
| AAATAAATTCTTTATTGTGC+AGG | 0.432010 | tig0018197:-23142 | None:intergenic |
| AGATTCTTTCTCTGGAAGTT+GGG | 0.432795 | tig0018197:+20546 | Msa1364950:CDS |
| AAAGACAGAGAGGCAAGGTT+TGG | 0.444726 | tig0018197:+22876 | Msa1364950:CDS |
| GATTTAGGGTTAGGGTTAGA+GGG | 0.445132 | tig0018197:-20282 | None:intergenic |
| TAGGGTTAGGGTTAGAGGGT+TGG | 0.445470 | tig0018197:-20278 | None:intergenic |
| CGATGGGATGGCTTGTACAC+TGG | 0.447414 | tig0018197:+20939 | Msa1364950:CDS |
| TGGTAATGGATTTAGGGTTA+GGG | 0.451006 | tig0018197:-20290 | None:intergenic |
| CCCTAACCAAATTATGAAGA+TGG | 0.457187 | tig0018197:+20876 | Msa1364950:CDS |
| ATGGGAAGAGCTATTGCATA+TGG | 0.459558 | tig0018197:+20617 | Msa1364950:CDS |
| CCCCAACTTGACAAATTCTC+TGG | 0.465454 | tig0018197:+20330 | Msa1364950:CDS |
| CGGAGAAGGAGAAGCGGGAG+GGG | 0.466441 | tig0018197:-20160 | None:intergenic |
| AAGTTGGGGATCGTCGGTGA+GGG | 0.467511 | tig0018197:-20316 | None:intergenic |
| TCTTAGTTATATTGGTAGTA+GGG | 0.467662 | tig0018197:+23166 | Msa1364950:three_prime_UTR |
| AAATCATCTTCTGTTAATAT+GGG | 0.469854 | tig0018197:+22808 | Msa1364950:CDS |
| ATGGGCACCTCTGTTGATTA+CGG | 0.470419 | tig0018197:+20895 | Msa1364950:CDS |
| AACACAACACACGATGACTT+TGG | 0.476542 | tig0018197:-20053 | None:intergenic |
| ACAGATTCCCTAAGCTCAGC+AGG | 0.478207 | tig0018197:-20381 | None:intergenic |
| ATCTACATTGTTATCAGTTG+GGG | 0.484820 | tig0018197:+23209 | Msa1364950:three_prime_UTR |
| TCTCTGAAAACGGACATATC+AGG | 0.488594 | tig0018197:-20231 | None:intergenic |
| ATCAAGCGGAGAAGGAGAAG+CGG | 0.493496 | tig0018197:-20166 | None:intergenic |
| TGAATATATCATTCAAGGGT+TGG | 0.494428 | tig0018197:+23302 | Msa1364950:three_prime_UTR |
| TTATCTACATTGTTATCAGT+TGG | 0.496099 | tig0018197:+23207 | Msa1364950:three_prime_UTR |
| TCAAGCGGAGAAGGAGAAGC+GGG | 0.501964 | tig0018197:-20165 | None:intergenic |
| TTCAGAAAACAAGTTCAAAT+GGG | 0.504697 | tig0018197:+20599 | Msa1364950:CDS |
| GCGGAGAAGGAGAAGCGGGA+GGG | 0.505756 | tig0018197:-20161 | None:intergenic |
| TTGATTACGGAGTTTGCAAA+GGG | 0.522380 | tig0018197:+20908 | Msa1364950:CDS |
| TCTGACTTGAGATAATCTCT+TGG | 0.522461 | tig0018197:-22272 | None:intergenic |
| ATATTCAGGAATTTGGTGAA+TGG | 0.526400 | tig0018197:+20523 | Msa1364950:intron |
| AGCAGGGGTTAAACATTGGT+TGG | 0.526618 | tig0018197:-20364 | None:intergenic |
| GAAGAAGAATACTTAATGAC+GGG | 0.529158 | tig0018197:-20429 | None:intergenic |
| GTGAACCTTCGAAACTATAT+GGG | 0.530499 | tig0018197:-23083 | None:intergenic |
| TAGTGCCCATATAGTTTCGA+AGG | 0.533679 | tig0018197:+23078 | Msa1364950:three_prime_UTR |
| TGCTGTGTCTTACAAGCATA+GGG | 0.539214 | tig0018197:+20203 | Msa1364950:CDS |
| CACTGTACGAACTGAACTCA+AGG | 0.539230 | tig0018197:+22122 | Msa1364950:CDS |
| AAGAAAATAAATACTACCGC+GGG | 0.542071 | tig0018197:+23026 | Msa1364950:three_prime_UTR |
| ATGCTGTGTCTTACAAGCAT+AGG | 0.543398 | tig0018197:+20202 | Msa1364950:CDS |
| TACTGTCCGCAAGGATGCCA+AGG | 0.550767 | tig0018197:+20747 | Msa1364950:CDS |
| TCAATGAATATATCATTCAA+GGG | 0.551217 | tig0018197:+23298 | Msa1364950:three_prime_UTR |
| GTTGGAGTGTTAACTGAGAA+GGG | 0.555349 | tig0018197:+20574 | Msa1364950:CDS |
| TCATCAGCATCAAGCGGAGA+AGG | 0.555395 | tig0018197:-20174 | None:intergenic |
| TAAATACTACCGCGGGGTGG+TGG | 0.556114 | tig0018197:+23033 | Msa1364950:three_prime_UTR |
| CCAGAGAATTTGTCAAGTTG+GGG | 0.563311 | tig0018197:-20330 | None:intergenic |
| TTTGTCAAGTTGGGGATCGT+CGG | 0.563964 | tig0018197:-20322 | None:intergenic |
| TGTTGGAGTGTTAACTGAGA+AGG | 0.564287 | tig0018197:+20573 | Msa1364950:CDS |
| GTTGATTACGGAGTTTGCAA+AGG | 0.565498 | tig0018197:+20907 | Msa1364950:CDS |
| CAAGTTGGGGATCGTCGGTG+AGG | 0.565523 | tig0018197:-20317 | None:intergenic |
| AGAAGAAGAATACTTAATGA+CGG | 0.565529 | tig0018197:-20430 | None:intergenic |
| AGTTGGGGATCGTCGGTGAG+GGG | 0.571103 | tig0018197:-20315 | None:intergenic |
| CATCTTCATAATTTGGTTAG+GGG | 0.573813 | tig0018197:-20875 | None:intergenic |
| GATAAAGCCACAAAGAGTAC+AGG | 0.574304 | tig0018197:+22901 | Msa1364950:CDS |
| CTCTGTCGTGAAGAGAAAGC+AGG | 0.575382 | tig0018197:-20128 | None:intergenic |
| CCTAACCAAATTATGAAGAT+GGG | 0.576980 | tig0018197:+20877 | Msa1364950:CDS |
| GCAGGAGATCCAGATCTTCG+TGG | 0.577212 | tig0018197:-20110 | None:intergenic |
| TCAGAGGAACTGTCAAGAGA+AGG | 0.578844 | tig0018197:+20696 | Msa1364950:CDS |
| TGCAAAGGGAAAAGAGCCGA+TGG | 0.578899 | tig0018197:+20922 | Msa1364950:CDS |
| ATCTGTGGATGGTATCAGAA+AGG | 0.579951 | tig0018197:+22364 | Msa1364950:CDS |
| AGATCTTATTAGTTCGGACG+AGG | 0.580223 | tig0018197:+22939 | Msa1364950:CDS |
| GTGAAATTGTTATCTGTGGA+TGG | 0.582479 | tig0018197:+22353 | Msa1364950:CDS |
| AGCGGAGAAGGAGAAGCGGG+AGG | 0.584047 | tig0018197:-20162 | None:intergenic |
| TGTCATAAGAAACCAGCAGT+TGG | 0.585566 | tig0018197:+22840 | Msa1364950:CDS |
| GCTCAGCAGGGGTTAAACAT+TGG | 0.588791 | tig0018197:-20368 | None:intergenic |
| AGGGAAAAGAGCCGATGGGA+TGG | 0.594074 | tig0018197:+20927 | Msa1364950:CDS |
| AGAATTGAAGAGTGCAAAGA+CGG | 0.594442 | tig0018197:-20725 | None:intergenic |
| AGAGATTATCTCAAGTCAGA+AGG | 0.595620 | tig0018197:+22275 | Msa1364950:CDS |
| AAGAATACTTAATGACGGGT+AGG | 0.599067 | tig0018197:-20425 | None:intergenic |
| CTTGAGTTCAGTTCGTACAG+TGG | 0.599594 | tig0018197:-22121 | None:intergenic |
| GCAAGTGAAATTGTTATCTG+TGG | 0.600173 | tig0018197:+22349 | Msa1364950:CDS |
| ACAACAGCTTCACACTCGCA+AGG | 0.603557 | tig0018197:+22489 | Msa1364950:CDS |
| CTTCAATTCTACTGTCCGCA+AGG | 0.606230 | tig0018197:+20738 | Msa1364950:CDS |
| TGTTTGGTAATGCTTATCAG+AGG | 0.614875 | tig0018197:+20680 | Msa1364950:CDS |
| CAACAGCTTCACACTCGCAA+GGG | 0.617797 | tig0018197:+22490 | Msa1364950:CDS |
| TTTCGACGGACAACAAGGGA+GGG | 0.619606 | tig0018197:-19995 | None:intergenic |
| ATATATCATTCAAGGGTTGG+TGG | 0.622516 | tig0018197:+23305 | Msa1364950:three_prime_UTR |
| AGGAACTGTCAAGAGAAGGA+AGG | 0.627697 | tig0018197:+20700 | Msa1364950:CDS |
| AAAGCAAATGCACAGCGAAG+AGG | 0.629693 | tig0018197:+22685 | Msa1364950:CDS |
| TTGGAGTGTTAACTGAGAAG+GGG | 0.630678 | tig0018197:+20575 | Msa1364950:CDS |
| TACGAACTGAACTCAAGGGA+GGG | 0.632715 | tig0018197:+22127 | Msa1364950:CDS |
| CAGATTCCCTAAGCTCAGCA+GGG | 0.634673 | tig0018197:-20380 | None:intergenic |
| TCGTCATCATCAGCATCAAG+CGG | 0.640174 | tig0018197:-20180 | None:intergenic |
| ATGGTATCAGAAAGGCATTG+AGG | 0.644692 | tig0018197:+22372 | Msa1364950:CDS |
| CAGTGTACAAGCCATCCCAT+CGG | 0.645912 | tig0018197:-20938 | None:intergenic |
| AGAGTAAAGACAGAGAGGCA+AGG | 0.646421 | tig0018197:+22871 | Msa1364950:CDS |
| AATATACCTTGGCATCCTTG+CGG | 0.655962 | tig0018197:-20753 | None:intergenic |
| TTAAAAGAGTAAAGACAGAG+AGG | 0.656016 | tig0018197:+22866 | Msa1364950:CDS |
| GCAAAGGGAAAAGAGCCGAT+GGG | 0.669274 | tig0018197:+20923 | Msa1364950:CDS |
| GTACGAACTGAACTCAAGGG+AGG | 0.674064 | tig0018197:+22126 | Msa1364950:CDS |
| GGTATGAAGACAATCTTGAA+CGG | 0.675223 | tig0018197:-20256 | None:intergenic |
| AGATTCCCTAAGCTCAGCAG+GGG | 0.676546 | tig0018197:-20379 | None:intergenic |
| GAAGAAAATAAATACTACCG+CGG | 0.677777 | tig0018197:+23025 | Msa1364950:three_prime_UTR |
| ACTGTACGAACTGAACTCAA+GGG | 0.685568 | tig0018197:+22123 | Msa1364950:CDS |
| GCAAACTCCGTAATCAACAG+AGG | 0.699830 | tig0018197:-20902 | None:intergenic |
| AAATAAATACTACCGCGGGG+TGG | 0.707092 | tig0018197:+23030 | Msa1364950:three_prime_UTR |
| AGAAAATAAATACTACCGCG+GGG | 0.751461 | tig0018197:+23027 | Msa1364950:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATATGAAATAATTAAA+TGG | - | tig0018197:22026-22045 | None:intergenic | 10.0% |
| !!! | TTATTTTGATTATTTAACTG+TGG | + | tig0018197:20997-21016 | Msa1364950:intron | 15.0% |
| !! | TTTACGTCTATTAATAAATA+TGG | - | tig0018197:21443-21462 | None:intergenic | 15.0% |
| !! | CTTTACAAAAGTAATAAAAA+GGG | - | tig0018197:21803-21822 | None:intergenic | 15.0% |
| !! | ACTTTACAAAAGTAATAAAA+AGG | - | tig0018197:21804-21823 | None:intergenic | 15.0% |
| !!! | TTTATTTCTCTTAGTTATAT+TGG | + | tig0018197:23158-23177 | Msa1364950:three_prime_UTR | 15.0% |
| !!! | AACTTATTATTTAAAACAGT+TGG | + | tig0018197:23333-23352 | Msa1364950:three_prime_UTR | 15.0% |
| !! | AAATAAAAAAGAGATTTCAG+AGG | - | tig0018197:20812-20831 | None:intergenic | 20.0% |
| !! | AAATTGCATATACAATGATT+GGG | - | tig0018197:21063-21082 | None:intergenic | 20.0% |
| !! | TAAATTGCATATACAATGAT+TGG | - | tig0018197:21064-21083 | None:intergenic | 20.0% |
| !! | TTAATAGACGTAAAACTATA+TGG | + | tig0018197:21449-21468 | Msa1364950:intron | 20.0% |
| !!! | AGAAAAACTAAACTTTGAAA+TGG | + | tig0018197:21510-21529 | Msa1364950:intron | 20.0% |
| !!! | TATTACTTTTGTAAAGTTTG+AGG | + | tig0018197:21606-21625 | Msa1364950:intron | 20.0% |
| !!! | ATTACTTTTGTAAAGTTTGA+GGG | + | tig0018197:21607-21626 | Msa1364950:intron | 20.0% |
| !!! | CTTTTATAAGAACTTGAAAT+AGG | - | tig0018197:22163-22182 | None:intergenic | 20.0% |
| !!! | AGACTAACTGTTAATTTTAA+TGG | + | tig0018197:22544-22563 | Msa1364950:intron | 20.0% |
| !! | GATAATAAATAACATGTAAC+AGG | - | tig0018197:22782-22801 | None:intergenic | 20.0% |
| !!! | ACATGTTATTTATTATCTTC+AGG | + | tig0018197:22785-22804 | Msa1364950:intron | 20.0% |
| !! | AAATCATCTTCTGTTAATAT+GGG | + | tig0018197:22808-22827 | Msa1364950:CDS | 20.0% |
| !! | TGAATTAGATCTTATTAGTT+CGG | + | tig0018197:22933-22952 | Msa1364950:CDS | 20.0% |
| !! | AAATAAATTCTTTATTGTGC+AGG | - | tig0018197:23145-23164 | None:intergenic | 20.0% |
| !!! | TACTTAACTTATCTTTTGAA+AGG | - | tig0018197:23274-23293 | None:intergenic | 20.0% |
| !! | TCAATGAATATATCATTCAA+GGG | + | tig0018197:23298-23317 | Msa1364950:three_prime_UTR | 20.0% |
| !!! | ACTTTGGTTAGTTTTGTTTA+GGG | - | tig0018197:20040-20059 | None:intergenic | 25.0% |
| ! | GTGTATCAAAGAAAAGAAAA+AGG | + | tig0018197:20076-20095 | Msa1364950:five_prime_UTR | 25.0% |
| ! | AGAAGAAGAATACTTAATGA+CGG | - | tig0018197:20433-20452 | None:intergenic | 25.0% |
| ! | ATTCAGAAAACAAGTTCAAA+TGG | + | tig0018197:20598-20617 | Msa1364950:CDS | 25.0% |
| ! | TTCAGAAAACAAGTTCAAAT+GGG | + | tig0018197:20599-20618 | Msa1364950:CDS | 25.0% |
| !!! | ACTATTTCTCTTTTCTTGTT+TGG | + | tig0018197:20664-20683 | Msa1364950:CDS | 25.0% |
| !!! | TTTATTTCTCTTGCTTTTGA+AGG | + | tig0018197:20825-20844 | Msa1364950:intron | 25.0% |
| !!! | TTATTTCTCTTGCTTTTGAA+GGG | + | tig0018197:20826-20845 | Msa1364950:intron | 25.0% |
| ! | TTGTATATGCAATTTACCAA+AGG | + | tig0018197:21068-21087 | Msa1364950:intron | 25.0% |
| ! | ATCAGACTTATTTCAGTAAA+TGG | - | tig0018197:21158-21177 | None:intergenic | 25.0% |
| ! | ATAAGTCTGATTTAAATGTG+TGG | + | tig0018197:21167-21186 | Msa1364950:intron | 25.0% |
| ! | GGTGACAAATAAAATAAAAG+AGG | + | tig0018197:21255-21274 | Msa1364950:intron | 25.0% |
| !! | GCAATCTATAAGTCTTATAT+TGG | + | tig0018197:21471-21490 | Msa1364950:intron | 25.0% |
| !!! | TTACTTTTGTAAAGTTTGAG+GGG | + | tig0018197:21608-21627 | Msa1364950:intron | 25.0% |
| ! | AGAAACAGAATAATAATCCT+GGG | - | tig0018197:21838-21857 | None:intergenic | 25.0% |
| ! | TGTAAGAAGAAAAAGAAACA+TGG | - | tig0018197:21898-21917 | None:intergenic | 25.0% |
| ! | CCTGAAATAACAAAGATTAA+TGG | - | tig0018197:21963-21982 | None:intergenic | 25.0% |
| !!! | CCATTAATCTTTGTTATTTC+AGG | + | tig0018197:21960-21979 | Msa1364950:intron | 25.0% |
| !!! | TTTTGATTTCATATGACATG+TGG | + | tig0018197:22195-22214 | Msa1364950:intron | 25.0% |
| !!! | CTTTTTCAAGTTTGTTTTGT+CGG | - | tig0018197:22324-22343 | None:intergenic | 25.0% |
| !!! | GGTTCTTTTTTCATCATTTT+TGG | - | tig0018197:22648-22667 | None:intergenic | 25.0% |
| ! | GAAATCATCTTCTGTTAATA+TGG | + | tig0018197:22807-22826 | Msa1364950:CDS | 25.0% |
| !! | TCTTAGTTATATTGGTAGTA+GGG | + | tig0018197:23166-23185 | Msa1364950:three_prime_UTR | 25.0% |
| ! | GTAGATAACCTAGTAAAATT+TGG | - | tig0018197:23195-23214 | None:intergenic | 25.0% |
| ! | TTATCTACATTGTTATCAGT+TGG | + | tig0018197:23207-23226 | Msa1364950:three_prime_UTR | 25.0% |
| ! | TATCTACATTGTTATCAGTT+GGG | + | tig0018197:23208-23227 | Msa1364950:three_prime_UTR | 25.0% |
| ! | GTCAATGAATATATCATTCA+AGG | + | tig0018197:23297-23316 | Msa1364950:three_prime_UTR | 25.0% |
| !!! | GACTTTGGTTAGTTTTGTTT+AGG | - | tig0018197:20041-20060 | None:intergenic | 30.0% |
| GAAGAAGAATACTTAATGAC+GGG | - | tig0018197:20432-20451 | None:intergenic | 30.0% | |
| TCTGTGTATATTCAGGAATT+TGG | + | tig0018197:20516-20535 | Msa1364950:intron | 30.0% | |
| ! | ATATTCAGGAATTTGGTGAA+TGG | + | tig0018197:20523-20542 | Msa1364950:intron | 30.0% |
| AGCTATTGCATATGGAAAAT+TGG | + | tig0018197:20625-20644 | Msa1364950:CDS | 30.0% | |
| ! | CATATGGAAAATTGGTTCTT+TGG | + | tig0018197:20633-20652 | Msa1364950:CDS | 30.0% |
| AGATGATAAGGAATATACCT+TGG | - | tig0018197:20767-20786 | None:intergenic | 30.0% | |
| AAAAATGGAAGCAGATGATA+AGG | - | tig0018197:20779-20798 | None:intergenic | 30.0% | |
| CATCTTCATAATTTGGTTAG+GGG | - | tig0018197:20878-20897 | None:intergenic | 30.0% | |
| CCATCTTCATAATTTGGTTA+GGG | - | tig0018197:20879-20898 | None:intergenic | 30.0% | |
| CCTAACCAAATTATGAAGAT+GGG | + | tig0018197:20877-20896 | Msa1364950:CDS | 30.0% | |
| TTTAACTGTGGAATTGCAAT+AGG | + | tig0018197:21009-21028 | Msa1364950:intron | 30.0% | |
| CTGATTTAAATGTGTGGAAT+TGG | + | tig0018197:21173-21192 | Msa1364950:intron | 30.0% | |
| CAGATGTGAATTATGATTCA+TGG | - | tig0018197:21336-21355 | None:intergenic | 30.0% | |
| !!! | GAAAGCTCAATCTTGTTTTT+AGG | + | tig0018197:21532-21551 | Msa1364950:intron | 30.0% |
| CTTTGTATATTCCCTTAAAC+TGG | - | tig0018197:21560-21579 | None:intergenic | 30.0% | |
| ATAATAATCCTGGGACATAA+TGG | - | tig0018197:21829-21848 | None:intergenic | 30.0% | |
| CAGAAACAGAATAATAATCC+TGG | - | tig0018197:21839-21858 | None:intergenic | 30.0% | |
| !! | GAAAAGTATTAATCGAAGTC+TGG | - | tig0018197:21867-21886 | None:intergenic | 30.0% |
| AAAAAGAAACATGGTTGACA+AGG | - | tig0018197:21889-21908 | None:intergenic | 30.0% | |
| ATCCACTAACCTATAACTTA+TGG | + | tig0018197:22076-22095 | Msa1364950:CDS | 30.0% | |
| GAAACTTAAGAACAGCATTT+AGG | + | tig0018197:22249-22268 | Msa1364950:intron | 30.0% | |
| TTAAAAGAGTAAAGACAGAG+AGG | + | tig0018197:22866-22885 | Msa1364950:CDS | 30.0% | |
| GAAGAAAATAAATACTACCG+CGG | + | tig0018197:23025-23044 | Msa1364950:three_prime_UTR | 30.0% | |
| AAGAAAATAAATACTACCGC+GGG | + | tig0018197:23026-23045 | Msa1364950:three_prime_UTR | 30.0% | |
| ! | CTCTTAGTTATATTGGTAGT+AGG | + | tig0018197:23165-23184 | Msa1364950:three_prime_UTR | 30.0% |
| ! | TAGGGATACCAAATTTTACT+AGG | + | tig0018197:23184-23203 | Msa1364950:three_prime_UTR | 30.0% |
| ATCTACATTGTTATCAGTTG+GGG | + | tig0018197:23209-23228 | Msa1364950:three_prime_UTR | 30.0% | |
| TGAATATATCATTCAAGGGT+TGG | + | tig0018197:23302-23321 | Msa1364950:three_prime_UTR | 30.0% | |
| !! | GTTTTCAAGCTGATTTTCGA+CGG | - | tig0018197:20012-20031 | None:intergenic | 35.0% |
| GGTATGAAGACAATCTTGAA+CGG | - | tig0018197:20259-20278 | None:intergenic | 35.0% | |
| !! | TGGTAATGGATTTAGGGTTA+GGG | - | tig0018197:20293-20312 | None:intergenic | 35.0% |
| !! | TTGGTAATGGATTTAGGGTT+AGG | - | tig0018197:20294-20313 | None:intergenic | 35.0% |
| ACCAGAGAATTTGTCAAGTT+GGG | - | tig0018197:20334-20353 | None:intergenic | 35.0% | |
| !! | AAGAATACTTAATGACGGGT+AGG | - | tig0018197:20428-20447 | None:intergenic | 35.0% |
| GATTCTGTCTGTGTATATTC+AGG | + | tig0018197:20509-20528 | Msa1364950:intron | 35.0% | |
| ! | AGATTCTTTCTCTGGAAGTT+GGG | + | tig0018197:20546-20565 | Msa1364950:CDS | 35.0% |
| !! | TGTTTGGTAATGCTTATCAG+AGG | + | tig0018197:20680-20699 | Msa1364950:CDS | 35.0% |
| ! | AGAATTGAAGAGTGCAAAGA+CGG | - | tig0018197:20728-20747 | None:intergenic | 35.0% |
| CCCTAACCAAATTATGAAGA+TGG | + | tig0018197:20876-20895 | Msa1364950:CDS | 35.0% | |
| CCCATCTTCATAATTTGGTT+AGG | - | tig0018197:20880-20899 | None:intergenic | 35.0% | |
| TTGATTACGGAGTTTGCAAA+GGG | + | tig0018197:20908-20927 | Msa1364950:CDS | 35.0% | |
| GTAGTTACTCTTTACTCCTT+TGG | - | tig0018197:21087-21106 | None:intergenic | 35.0% | |
| ! | TTGATAGCCATTCAATAGCT+TGG | + | tig0018197:21303-21322 | Msa1364950:intron | 35.0% |
| !!! | TGTTTTTAGGTGCCAGTTTA+AGG | + | tig0018197:21545-21564 | Msa1364950:intron | 35.0% |
| !!! | GTTTTTAGGTGCCAGTTTAA+GGG | + | tig0018197:21546-21565 | Msa1364950:intron | 35.0% |
| TAAAGTTGTTGTCATGTGAC+TGG | + | tig0018197:21649-21668 | Msa1364950:intron | 35.0% | |
| ! | TAACCCTCTTTTTACACAAG+AGG | - | tig0018197:21704-21723 | None:intergenic | 35.0% |
| TCTTGTGTAAAAAGAGGGTT+AGG | + | tig0018197:21703-21722 | Msa1364950:intron | 35.0% | |
| GTTGCATACAATACACCAAA+TGG | + | tig0018197:21725-21744 | Msa1364950:intron | 35.0% | |
| CATACAATACACCAAATGGT+GGG | + | tig0018197:21729-21748 | Msa1364950:intron | 35.0% | |
| AAGTAATAAAAAGGGCAACC+CGG | - | tig0018197:21795-21814 | None:intergenic | 35.0% | |
| TAAAGTTTCCATTATGTCCC+AGG | + | tig0018197:21818-21837 | Msa1364950:intron | 35.0% | |
| !! | TTTGTTATTTCAGGCGTCAA+GGG | + | tig0018197:21969-21988 | Msa1364950:intron | 35.0% |
| ATCAGCATTCTATTGTAGCA+AGG | + | tig0018197:22047-22066 | Msa1364950:intron | 35.0% | |
| TGCCATAAGTTATAGGTTAG+TGG | - | tig0018197:22081-22100 | None:intergenic | 35.0% | |
| TGCTTTCTGCCATAAGTTAT+AGG | - | tig0018197:22088-22107 | None:intergenic | 35.0% | |
| GTGGATGTAACATATACATG+TGG | + | tig0018197:22214-22233 | Msa1364950:intron | 35.0% | |
| ! | TCTGACTTGAGATAATCTCT+TGG | - | tig0018197:22275-22294 | None:intergenic | 35.0% |
| AGAGATTATCTCAAGTCAGA+AGG | + | tig0018197:22275-22294 | Msa1364950:CDS | 35.0% | |
| GCAAGTGAAATTGTTATCTG+TGG | + | tig0018197:22349-22368 | Msa1364950:CDS | 35.0% | |
| GTGAAATTGTTATCTGTGGA+TGG | + | tig0018197:22353-22372 | Msa1364950:CDS | 35.0% | |
| !! | AATTTTGATACCAGCAATGC+AGG | + | tig0018197:22459-22478 | Msa1364950:intron | 35.0% |
| !! | AGATTTCTTTCTGAGATTGC+AGG | + | tig0018197:22516-22535 | Msa1364950:CDS | 35.0% |
| ! | CTTTGATCATTTGGAGTCTT+TGG | - | tig0018197:22669-22688 | None:intergenic | 35.0% |
| GTGCATTTGCTTTGATCATT+TGG | - | tig0018197:22678-22697 | None:intergenic | 35.0% | |
| TGAGATGCTAAAAAGGATTC+AGG | + | tig0018197:22708-22727 | Msa1364950:intron | 35.0% | |
| AGAAAATAAATACTACCGCG+GGG | + | tig0018197:23027-23046 | Msa1364950:three_prime_UTR | 35.0% | |
| GTGAACCTTCGAAACTATAT+GGG | - | tig0018197:23086-23105 | None:intergenic | 35.0% | |
| AGTGAACCTTCGAAACTATA+TGG | - | tig0018197:23087-23106 | None:intergenic | 35.0% | |
| TTCTTTATTGTGCAGGACTT+TGG | - | tig0018197:23138-23157 | None:intergenic | 35.0% | |
| ATATATCATTCAAGGGTTGG+TGG | + | tig0018197:23305-23324 | Msa1364950:three_prime_UTR | 35.0% | |
| ! | TGATTTTCGACGGACAACAA+GGG | - | tig0018197:20002-20021 | None:intergenic | 40.0% |
| AACACAACACACGATGACTT+TGG | - | tig0018197:20056-20075 | None:intergenic | 40.0% | |
| ATGCTGTGTCTTACAAGCAT+AGG | + | tig0018197:20202-20221 | Msa1364950:CDS | 40.0% | |
| TGCTGTGTCTTACAAGCATA+GGG | + | tig0018197:20203-20222 | Msa1364950:CDS | 40.0% | |
| ! | TCTCTGAAAACGGACATATC+AGG | - | tig0018197:20234-20253 | None:intergenic | 40.0% |
| ! | GATTTAGGGTTAGGGTTAGA+GGG | - | tig0018197:20285-20304 | None:intergenic | 40.0% |
| !! | GGGGTTTGGTAATGGATTTA+GGG | - | tig0018197:20299-20318 | None:intergenic | 40.0% |
| !! | AGGGGTTTGGTAATGGATTT+AGG | - | tig0018197:20300-20319 | None:intergenic | 40.0% |
| ! | CCAGAGAATTTGTCAAGTTG+GGG | - | tig0018197:20333-20352 | None:intergenic | 40.0% |
| GACCAGAGAATTTGTCAAGT+TGG | - | tig0018197:20335-20354 | None:intergenic | 40.0% | |
| GTGAATGGAGATTCTTTCTC+TGG | + | tig0018197:20538-20557 | Msa1364950:CDS | 40.0% | |
| ! | GAGATTCTTTCTCTGGAAGT+TGG | + | tig0018197:20545-20564 | Msa1364950:CDS | 40.0% |
| ! | TGTTGGAGTGTTAACTGAGA+AGG | + | tig0018197:20573-20592 | Msa1364950:CDS | 40.0% |
| ! | GTTGGAGTGTTAACTGAGAA+GGG | + | tig0018197:20574-20593 | Msa1364950:CDS | 40.0% |
| ! | TTGGAGTGTTAACTGAGAAG+GGG | + | tig0018197:20575-20594 | Msa1364950:CDS | 40.0% |
| ATGGGAAGAGCTATTGCATA+TGG | + | tig0018197:20617-20636 | Msa1364950:CDS | 40.0% | |
| AATATACCTTGGCATCCTTG+CGG | - | tig0018197:20756-20775 | None:intergenic | 40.0% | |
| AGAGGCGATGGTTGAAAAAA+TGG | - | tig0018197:20794-20813 | None:intergenic | 40.0% | |
| AAAAGAGATTTCAGAGGCGA+TGG | - | tig0018197:20806-20825 | None:intergenic | 40.0% | |
| !! | CTCTTGCTTTTGAAGGGTAA+TGG | + | tig0018197:20832-20851 | Msa1364950:intron | 40.0% |
| AGGTGCCCATCTTCATAATT+TGG | - | tig0018197:20885-20904 | None:intergenic | 40.0% | |
| GTTGATTACGGAGTTTGCAA+AGG | + | tig0018197:20907-20926 | Msa1364950:CDS | 40.0% | |
| ATTTGTCACCACAATGTGAC+AGG | - | tig0018197:21245-21264 | None:intergenic | 40.0% | |
| ATTGCGACCAAGCTATTGAA+TGG | - | tig0018197:21313-21332 | None:intergenic | 40.0% | |
| ! | GAGCAGTATCAGCTTTAACA+TGG | + | tig0018197:21364-21383 | Msa1364950:intron | 40.0% |
| GCATAACAAGAAACCTAGCA+TGG | - | tig0018197:21403-21422 | None:intergenic | 40.0% | |
| !! | TATGGCGTGCTCTGAAAAAA+TGG | - | tig0018197:21425-21444 | None:intergenic | 40.0% |
| TAAAGTTTGAGGGGTAACCT+TGG | + | tig0018197:21617-21636 | Msa1364950:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAAAG+AGG | + | tig0018197:21697-21716 | Msa1364950:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAAGA+GGG | + | tig0018197:21698-21717 | Msa1364950:intron | 40.0% | |
| GCATACAATACACCAAATGG+TGG | + | tig0018197:21728-21747 | Msa1364950:intron | 40.0% | |
| !! | CTTTGTTATTTCAGGCGTCA+AGG | + | tig0018197:21968-21987 | Msa1364950:intron | 40.0% |
| ACTGTACGAACTGAACTCAA+GGG | + | tig0018197:22123-22142 | Msa1364950:CDS | 40.0% | |
| ATCTGTGGATGGTATCAGAA+AGG | + | tig0018197:22364-22383 | Msa1364950:CDS | 40.0% | |
| !! | ATGGTATCAGAAAGGCATTG+AGG | + | tig0018197:22372-22391 | Msa1364950:CDS | 40.0% |
| TTGCAGAGAAAGAACTCAAG+TGG | - | tig0018197:22426-22445 | None:intergenic | 40.0% | |
| !!! | TGTTACTTTTCCTGCATTGC+TGG | - | tig0018197:22472-22491 | None:intergenic | 40.0% |
| !! | AGCTGACTTTTACCCCTTTA+CGG | + | tig0018197:22601-22620 | Msa1364950:intron | 40.0% |
| TTCCTGTAAACAGCCGTAAA+GGG | - | tig0018197:22617-22636 | None:intergenic | 40.0% | |
| TTTCCTGTAAACAGCCGTAA+AGG | - | tig0018197:22618-22637 | None:intergenic | 40.0% | |
| GAAGAGGTGAGATGCTAAAA+AGG | + | tig0018197:22701-22720 | Msa1364950:intron | 40.0% | |
| CTTATGCATGTGTCCATTAG+AGG | + | tig0018197:22747-22766 | Msa1364950:intron | 40.0% | |
| TGTCATAAGAAACCAGCAGT+TGG | + | tig0018197:22840-22859 | Msa1364950:CDS | 40.0% | |
| ! | CTCTTTTAACATCCAACTGC+TGG | - | tig0018197:22855-22874 | None:intergenic | 40.0% |
| ! | GATAAAGCCACAAAGAGTAC+AGG | + | tig0018197:22901-22920 | Msa1364950:CDS | 40.0% |
| AGATCTTATTAGTTCGGACG+AGG | + | tig0018197:22939-22958 | Msa1364950:CDS | 40.0% | |
| TAGTGCCCATATAGTTTCGA+AGG | + | tig0018197:23078-23097 | Msa1364950:three_prime_UTR | 40.0% | |
| ! | CTGATTTTCGACGGACAACA+AGG | - | tig0018197:20003-20022 | None:intergenic | 45.0% |
| TCGTCATCATCAGCATCAAG+CGG | - | tig0018197:20183-20202 | None:intergenic | 45.0% | |
| ! | TTGAACGGCGTCTCTGAAAA+CGG | - | tig0018197:20244-20263 | None:intergenic | 45.0% |
| ! | GGATTTAGGGTTAGGGTTAG+AGG | - | tig0018197:20286-20305 | None:intergenic | 45.0% |
| !! | TTTGTCAAGTTGGGGATCGT+CGG | - | tig0018197:20325-20344 | None:intergenic | 45.0% |
| CCCCAACTTGACAAATTCTC+TGG | + | tig0018197:20330-20349 | Msa1364950:CDS | 45.0% | |
| AGCAGGGGTTAAACATTGGT+TGG | - | tig0018197:20367-20386 | None:intergenic | 45.0% | |
| TTTAACCCCTGCTGAGCTTA+GGG | + | tig0018197:20374-20393 | Msa1364950:CDS | 45.0% | |
| TCAGAGGAACTGTCAAGAGA+AGG | + | tig0018197:20696-20715 | Msa1364950:CDS | 45.0% | |
| AGGAACTGTCAAGAGAAGGA+AGG | + | tig0018197:20700-20719 | Msa1364950:CDS | 45.0% | |
| CTTCAATTCTACTGTCCGCA+AGG | + | tig0018197:20738-20757 | Msa1364950:CDS | 45.0% | |
| ! | ATGGGCACCTCTGTTGATTA+CGG | + | tig0018197:20895-20914 | Msa1364950:CDS | 45.0% |
| GCAAACTCCGTAATCAACAG+AGG | - | tig0018197:20905-20924 | None:intergenic | 45.0% | |
| GTGTGGAATTGGACACTAGT+TGG | + | tig0018197:21184-21203 | Msa1364950:intron | 45.0% | |
| GCATTTGTCCTGTCACATTG+TGG | + | tig0018197:21234-21253 | Msa1364950:intron | 45.0% | |
| AACAAGAAACCTAGCATGGC+AGG | - | tig0018197:21399-21418 | None:intergenic | 45.0% | |
| GTTGTTGTCATGTGACTGGA+AGG | + | tig0018197:21653-21672 | Msa1364950:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | - | tig0018197:21693-21712 | None:intergenic | 45.0% |
| CTTGAGTTCAGTTCGTACAG+TGG | - | tig0018197:22124-22143 | None:intergenic | 45.0% | |
| CACTGTACGAACTGAACTCA+AGG | + | tig0018197:22122-22141 | Msa1364950:CDS | 45.0% | |
| TACGAACTGAACTCAAGGGA+GGG | + | tig0018197:22127-22146 | Msa1364950:CDS | 45.0% | |
| !!! | AAGTTTGTTTTGTCGGCGAG+GGG | - | tig0018197:22317-22336 | None:intergenic | 45.0% |
| !!! | CAAGTTTGTTTTGTCGGCGA+GGG | - | tig0018197:22318-22337 | None:intergenic | 45.0% |
| !!! | TCAAGTTTGTTTTGTCGGCG+AGG | - | tig0018197:22319-22338 | None:intergenic | 45.0% |
| TCCTGTAAACAGCCGTAAAG+GGG | - | tig0018197:22616-22635 | None:intergenic | 45.0% | |
| AAAGCAAATGCACAGCGAAG+AGG | + | tig0018197:22685-22704 | Msa1364950:CDS | 45.0% | |
| CAGGTGTGTTAAGCCTCTAA+TGG | - | tig0018197:22763-22782 | None:intergenic | 45.0% | |
| AGAGTAAAGACAGAGAGGCA+AGG | + | tig0018197:22871-22890 | Msa1364950:CDS | 45.0% | |
| AAAGACAGAGAGGCAAGGTT+TGG | + | tig0018197:22876-22895 | Msa1364950:CDS | 45.0% | |
| CATCTTGCCTGTACTCTTTG+TGG | - | tig0018197:22911-22930 | None:intergenic | 45.0% | |
| AAATAAATACTACCGCGGGG+TGG | + | tig0018197:23030-23049 | Msa1364950:three_prime_UTR | 45.0% | |
| ! | TAATTTTTACCACCACCCCG+CGG | - | tig0018197:23045-23064 | None:intergenic | 45.0% |
| TTTCGACGGACAACAAGGGA+GGG | - | tig0018197:19998-20017 | None:intergenic | 50.0% | |
| ! | TTTTCGACGGACAACAAGGG+AGG | - | tig0018197:19999-20018 | None:intergenic | 50.0% |
| GTCGTCAAACCACGAAGATC+TGG | + | tig0018197:20101-20120 | Msa1364950:CDS | 50.0% | |
| CTCTGTCGTGAAGAGAAAGC+AGG | - | tig0018197:20131-20150 | None:intergenic | 50.0% | |
| ATCAAGCGGAGAAGGAGAAG+CGG | - | tig0018197:20169-20188 | None:intergenic | 50.0% | |
| TCATCAGCATCAAGCGGAGA+AGG | - | tig0018197:20177-20196 | None:intergenic | 50.0% | |
| AGGGTTAGGGTTAGAGGGTT+GGG | - | tig0018197:20280-20299 | None:intergenic | 50.0% | |
| TAGGGTTAGGGTTAGAGGGT+TGG | - | tig0018197:20281-20300 | None:intergenic | 50.0% | |
| GCTCAGCAGGGGTTAAACAT+TGG | - | tig0018197:20371-20390 | None:intergenic | 50.0% | |
| GTTTAACCCCTGCTGAGCTT+AGG | + | tig0018197:20373-20392 | Msa1364950:CDS | 50.0% | |
| AGATTCCCTAAGCTCAGCAG+GGG | - | tig0018197:20382-20401 | None:intergenic | 50.0% | |
| CAGATTCCCTAAGCTCAGCA+GGG | - | tig0018197:20383-20402 | None:intergenic | 50.0% | |
| ACAGATTCCCTAAGCTCAGC+AGG | - | tig0018197:20384-20403 | None:intergenic | 50.0% | |
| TCTGGAAGTTGGGTCACTGT+TGG | + | tig0018197:20556-20575 | Msa1364950:CDS | 50.0% | |
| TGCAAAGGGAAAAGAGCCGA+TGG | + | tig0018197:20922-20941 | Msa1364950:CDS | 50.0% | |
| GCAAAGGGAAAAGAGCCGAT+GGG | + | tig0018197:20923-20942 | Msa1364950:CDS | 50.0% | |
| CAGTGTACAAGCCATCCCAT+CGG | - | tig0018197:20941-20960 | None:intergenic | 50.0% | |
| ATACATGTGCCTGCCATGCT+AGG | + | tig0018197:21387-21406 | Msa1364950:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | - | tig0018197:21637-21656 | None:intergenic | 50.0% | |
| GTCATGTGACTGGAAGGTCA+CGG | + | tig0018197:21659-21678 | Msa1364950:intron | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | + | tig0018197:21660-21679 | Msa1364950:intron | 50.0% | |
| GTACGAACTGAACTCAAGGG+AGG | + | tig0018197:22126-22145 | Msa1364950:CDS | 50.0% | |
| !!! | AGTTTGTTTTGTCGGCGAGG+GGG | - | tig0018197:22316-22335 | None:intergenic | 50.0% |
| ACAACAGCTTCACACTCGCA+AGG | + | tig0018197:22489-22508 | Msa1364950:CDS | 50.0% | |
| CAACAGCTTCACACTCGCAA+GGG | + | tig0018197:22490-22509 | Msa1364950:CDS | 50.0% | |
| ACCCCTTTACGGCTGTTTAC+AGG | + | tig0018197:22612-22631 | Msa1364950:intron | 50.0% | |
| GCAGGAGATCCAGATCTTCG+TGG | - | tig0018197:20113-20132 | None:intergenic | 55.0% | |
| TCAAGCGGAGAAGGAGAAGC+GGG | - | tig0018197:20168-20187 | None:intergenic | 55.0% | |
| ! | GTCGGTGAGGGGTTTGGTAA+TGG | - | tig0018197:20307-20326 | None:intergenic | 55.0% |
| AAGTTGGGGATCGTCGGTGA+GGG | - | tig0018197:20319-20338 | None:intergenic | 55.0% | |
| TACTGTCCGCAAGGATGCCA+AGG | + | tig0018197:20747-20766 | Msa1364950:CDS | 55.0% | |
| AGGGAAAAGAGCCGATGGGA+TGG | + | tig0018197:20927-20946 | Msa1364950:CDS | 55.0% | |
| ! | CGATGGGATGGCTTGTACAC+TGG | + | tig0018197:20939-20958 | Msa1364950:CDS | 55.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | + | tig0018197:21672-21691 | Msa1364950:intron | 55.0% | |
| ! | CAAATGGTGGGACCCCTTCT+CGG | + | tig0018197:21741-21760 | Msa1364950:intron | 55.0% |
| CTAAAGCTCCCGCATACGCA+GGG | - | tig0018197:21768-21787 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | tig0018197:21769-21788 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | + | tig0018197:21773-21792 | Msa1364950:intron | 55.0% |
| TAAATACTACCGCGGGGTGG+TGG | + | tig0018197:23033-23052 | Msa1364950:three_prime_UTR | 55.0% | |
| AGTTGGGGATCGTCGGTGAG+GGG | - | tig0018197:20318-20337 | None:intergenic | 60.0% | |
| ! | CAAGTTGGGGATCGTCGGTG+AGG | - | tig0018197:20320-20339 | None:intergenic | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | + | tig0018197:21626-21645 | Msa1364950:intron | 60.0% | |
| CGAGAAGGGGTCCCACCATT+TGG | - | tig0018197:21743-21762 | None:intergenic | 60.0% | |
| CATACGCAGGGTCCGAGAAG+GGG | - | tig0018197:21756-21775 | None:intergenic | 60.0% | |
| GCATACGCAGGGTCCGAGAA+GGG | - | tig0018197:21757-21776 | None:intergenic | 60.0% | |
| CTTCTCGGACCCTGCGTATG+CGG | + | tig0018197:21756-21775 | Msa1364950:intron | 60.0% | |
| TTCTCGGACCCTGCGTATGC+GGG | + | tig0018197:21757-21776 | Msa1364950:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | + | tig0018197:21774-21793 | Msa1364950:intron | 60.0% |
| GGAGAAGCGGGAGGGGTTTC+AGG | - | tig0018197:20156-20175 | None:intergenic | 65.0% | |
| CGGAGAAGGAGAAGCGGGAG+GGG | - | tig0018197:20163-20182 | None:intergenic | 65.0% | |
| GCGGAGAAGGAGAAGCGGGA+GGG | - | tig0018197:20164-20183 | None:intergenic | 65.0% | |
| AGCGGAGAAGGAGAAGCGGG+AGG | - | tig0018197:20165-20184 | None:intergenic | 65.0% | |
| GGGATCGTCGGTGAGGGGTT+TGG | - | tig0018197:20313-20332 | None:intergenic | 65.0% | |
| CGCATACGCAGGGTCCGAGA+AGG | - | tig0018197:21758-21777 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0018197 | gene | 19986 | 23409 | 19986 | ID=Msa1364950;Name=Msa1364950 |
| tig0018197 | mRNA | 19986 | 23409 | 19986 | ID=Msa1364950-mRNA-1;Parent=Msa1364950;Name=Msa1364950-mRNA-1;_AED=0.09;_eAED=0.09;_QI=113|0.85|0.87|1|1|1|8|440|410 |
| tig0018197 | exon | 19986 | 20439 | 19986 | ID=Msa1364950-mRNA-1:exon:14333;Parent=Msa1364950-mRNA-1 |
| tig0018197 | exon | 20531 | 20768 | 20531 | ID=Msa1364950-mRNA-1:exon:14334;Parent=Msa1364950-mRNA-1 |
| tig0018197 | exon | 20847 | 20971 | 20847 | ID=Msa1364950-mRNA-1:exon:14335;Parent=Msa1364950-mRNA-1 |
| tig0018197 | exon | 22065 | 22148 | 22065 | ID=Msa1364950-mRNA-1:exon:14336;Parent=Msa1364950-mRNA-1 |
| tig0018197 | exon | 22250 | 22393 | 22250 | ID=Msa1364950-mRNA-1:exon:14337;Parent=Msa1364950-mRNA-1 |
| tig0018197 | exon | 22473 | 22537 | 22473 | ID=Msa1364950-mRNA-1:exon:14338;Parent=Msa1364950-mRNA-1 |
| tig0018197 | exon | 22634 | 22706 | 22634 | ID=Msa1364950-mRNA-1:exon:14339;Parent=Msa1364950-mRNA-1 |
| tig0018197 | exon | 22807 | 23409 | 22807 | ID=Msa1364950-mRNA-1:exon:14340;Parent=Msa1364950-mRNA-1 |
| tig0018197 | five_prime_UTR | 19986 | 20098 | 19986 | ID=Msa1364950-mRNA-1:five_prime_utr;Parent=Msa1364950-mRNA-1 |
| tig0018197 | CDS | 20099 | 20439 | 20099 | ID=Msa1364950-mRNA-1:cds;Parent=Msa1364950-mRNA-1 |
| tig0018197 | CDS | 20531 | 20768 | 20531 | ID=Msa1364950-mRNA-1:cds;Parent=Msa1364950-mRNA-1 |
| tig0018197 | CDS | 20847 | 20971 | 20847 | ID=Msa1364950-mRNA-1:cds;Parent=Msa1364950-mRNA-1 |
| tig0018197 | CDS | 22065 | 22148 | 22065 | ID=Msa1364950-mRNA-1:cds;Parent=Msa1364950-mRNA-1 |
| tig0018197 | CDS | 22250 | 22393 | 22250 | ID=Msa1364950-mRNA-1:cds;Parent=Msa1364950-mRNA-1 |
| tig0018197 | CDS | 22473 | 22537 | 22473 | ID=Msa1364950-mRNA-1:cds;Parent=Msa1364950-mRNA-1 |
| tig0018197 | CDS | 22634 | 22706 | 22634 | ID=Msa1364950-mRNA-1:cds;Parent=Msa1364950-mRNA-1 |
| tig0018197 | CDS | 22807 | 22969 | 22807 | ID=Msa1364950-mRNA-1:cds;Parent=Msa1364950-mRNA-1 |
| tig0018197 | three_prime_UTR | 22970 | 23409 | 22970 | ID=Msa1364950-mRNA-1:three_prime_utr;Parent=Msa1364950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
