Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524390 | XP_003604042.1 | 92.512 | 414 | 25 | 4 | 1 | 410 | 1 | 412 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524390 | sp|Q5EAW4|MCM10_XENLA | 30.049 | 203 | 137 | 4 | 63 | 261 | 221 | 422 | 2.19e-25 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524390 | G7J8I4 | 92.512 | 414 | 25 | 4 | 1 | 410 | 1 | 412 | 0.0 | 751 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0159590 | Msa0524390 | 0.803406 | 3.539387e-49 | -8.615850e-47 |
| Msa0159620 | Msa0524390 | 0.815012 | 1.149509e-51 | -8.615850e-47 |
| Msa0373500 | Msa0524390 | 0.825940 | 3.562875e-54 | -8.615850e-47 |
| Msa0414880 | Msa0524390 | 0.810440 | 1.151429e-50 | -8.615850e-47 |
| Msa0454560 | Msa0524390 | 0.845840 | 3.158549e-59 | -8.615850e-47 |
| Msa0459740 | Msa0524390 | 0.816556 | 5.203726e-52 | -8.615850e-47 |
| Msa0462780 | Msa0524390 | 0.805893 | 1.071535e-49 | -8.615850e-47 |
| Msa0468620 | Msa0524390 | 0.820248 | 7.582302e-53 | -8.615850e-47 |
| Msa0481890 | Msa0524390 | 0.817072 | 3.986963e-52 | -8.615850e-47 |
| Msa0502510 | Msa0524390 | 0.830473 | 2.879356e-55 | -8.615850e-47 |
| Msa0514500 | Msa0524390 | 0.820417 | 6.935868e-53 | -8.615850e-47 |
| Msa0524280 | Msa0524390 | 0.982011 | 5.236721e-154 | -8.615850e-47 |
| Msa0524390 | Msa0545920 | 0.802745 | 4.848203e-49 | -8.615850e-47 |
| Msa0524390 | Msa0601720 | 0.803211 | 3.883848e-49 | -8.615850e-47 |
| Msa0524390 | Msa0641990 | 0.803957 | 2.720605e-49 | -8.615850e-47 |
| Msa0524390 | Msa0681050 | 0.808134 | 3.595547e-50 | -8.615850e-47 |
| Msa0524390 | Msa0709440 | 0.816224 | 6.173750e-52 | -8.615850e-47 |
| Msa0524390 | Msa0720520 | 0.807763 | 4.312624e-50 | -8.615850e-47 |
| Msa0524390 | Msa0803350 | 0.817823 | 2.700736e-52 | -8.615850e-47 |
| Msa0524390 | Msa0888790 | 0.814722 | 1.332916e-51 | -8.615850e-47 |
| Msa0524390 | Msa1084530 | 0.812662 | 3.786868e-51 | -8.615850e-47 |
| Msa0524390 | Msa1125820 | 0.813152 | 2.957992e-51 | -8.615850e-47 |
| Msa0524390 | Msa1125990 | 0.809913 | 1.495832e-50 | -8.615850e-47 |
| Msa0524390 | Msa1171290 | 0.816024 | 6.843679e-52 | -8.615850e-47 |
| Msa0524390 | Msa1218820 | 0.809612 | 1.735911e-50 | -8.615850e-47 |
| Msa0524390 | Msa1364950 | 0.953568 | 2.059982e-111 | -8.615850e-47 |
| Msa0524390 | Msa1387440 | 0.807419 | 5.101075e-50 | -8.615850e-47 |
| Msa0524390 | Msa1417580 | 0.913047 | 9.674233e-84 | -8.615850e-47 |
| Msa0524390 | Msa1435530 | 0.930323 | 1.934895e-93 | -8.615850e-47 |
| Msa0524390 | Msa1465360 | 0.826422 | 2.737168e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524390 | MtrunA17_Chr3g0145611 | 92.512 | 414 | 25 | 4 | 1 | 410 | 1 | 412 | 0.0 | 751 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0524390 | AT2G20980.1 | 50.620 | 403 | 166 | 9 | 17 | 409 | 17 | 396 | 4.03e-116 | 344 |
Find 136 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGATCATTTGGAGTCTT+TGG | 0.125778 | 3_4:+77858466 | None:intergenic |
| GGAGAAGCGGGAGGGGTTTC+AGG | 0.144299 | 3_4:+77860979 | None:intergenic |
| AGGGGTTTGGTAATGGATTT+AGG | 0.166281 | 3_4:+77860835 | None:intergenic |
| GAAATCATCTTCTGTTAATA+TGG | 0.187113 | 3_4:-77858325 | Msa0524390:CDS |
| AGGTGCCCATCTTCATAATT+TGG | 0.237873 | 3_4:+77860250 | None:intergenic |
| TGCTTTCTGCCATAAGTTAT+AGG | 0.239694 | 3_4:+77859047 | None:intergenic |
| TTGGTAATGGATTTAGGGTT+AGG | 0.247428 | 3_4:+77860841 | None:intergenic |
| AGTGAACCTTCGAAACTATA+TGG | 0.258865 | 3_4:+77858048 | None:intergenic |
| CATATGGAAAATTGGTTCTT+TGG | 0.260862 | 3_4:-77860499 | Msa0524390:CDS |
| TTTATTTCTCTTAGTTATAT+TGG | 0.272528 | 3_4:-77857974 | Msa0524390:three_prime_UTR |
| AGCTATTGCATATGGAAAAT+TGG | 0.275020 | 3_4:-77860507 | Msa0524390:CDS |
| CATCTTGCCTGTACTCTTTG+TGG | 0.306180 | 3_4:+77858224 | None:intergenic |
| GTAGATAACCTAGTAAAATT+TGG | 0.307826 | 3_4:+77857940 | None:intergenic |
| GAAACTTAAGAACAGCATTT+AGG | 0.310137 | 3_4:-77858883 | Msa0524390:CDS |
| GGATTTAGGGTTAGGGTTAG+AGG | 0.317608 | 3_4:+77860849 | None:intergenic |
| CTCTTAGTTATATTGGTAGT+AGG | 0.320201 | 3_4:-77857967 | Msa0524390:three_prime_UTR |
| GTGCATTTGCTTTGATCATT+TGG | 0.328321 | 3_4:+77858457 | None:intergenic |
| ACCAGAGAATTTGTCAAGTT+GGG | 0.333949 | 3_4:+77860801 | None:intergenic |
| TCTGTGTATATTCAGGAATT+TGG | 0.341989 | 3_4:-77860616 | Msa0524390:intron |
| CCCATCTTCATAATTTGGTT+AGG | 0.353508 | 3_4:+77860255 | None:intergenic |
| AGATTTCTTTCTGAGATTGC+AGG | 0.358419 | 3_4:-77858616 | Msa0524390:intron |
| GGGGTTTGGTAATGGATTTA+GGG | 0.358994 | 3_4:+77860836 | None:intergenic |
| ATCCACTAACCTATAACTTA+TGG | 0.367477 | 3_4:-77859056 | Msa0524390:CDS |
| AGGGTTAGGGTTAGAGGGTT+GGG | 0.369684 | 3_4:+77860855 | None:intergenic |
| GTGTATCAAAGAAAAGAAAA+AGG | 0.374356 | 3_4:-77861056 | Msa0524390:five_prime_UTR |
| GGGATCGTCGGTGAGGGGTT+TGG | 0.378542 | 3_4:+77860822 | None:intergenic |
| ATTCAGAAAACAAGTTCAAA+TGG | 0.379635 | 3_4:-77860534 | Msa0524390:CDS |
| AACTTATTATTTAAAACAGT+TGG | 0.380158 | 3_4:-77857799 | Msa0524390:three_prime_UTR |
| TGCCATAAGTTATAGGTTAG+TGG | 0.382941 | 3_4:+77859054 | None:intergenic |
| TTCTTTATTGTGCAGGACTT+TGG | 0.384179 | 3_4:+77857997 | None:intergenic |
| GTGAATGGAGATTCTTTCTC+TGG | 0.384793 | 3_4:-77860594 | Msa0524390:CDS |
| GTCGGTGAGGGGTTTGGTAA+TGG | 0.386273 | 3_4:+77860828 | None:intergenic |
| GAGATTCTTTCTCTGGAAGT+TGG | 0.388819 | 3_4:-77860587 | Msa0524390:CDS |
| TATCTACATTGTTATCAGTT+GGG | 0.389092 | 3_4:-77857924 | Msa0524390:three_prime_UTR |
| TGAATTAGATCTTATTAGTT+CGG | 0.393103 | 3_4:-77858199 | Msa0524390:CDS |
| GACCAGAGAATTTGTCAAGT+TGG | 0.402451 | 3_4:+77860800 | None:intergenic |
| GTCGTCAAACCACGAAGATC+TGG | 0.403762 | 3_4:-77861031 | Msa0524390:CDS |
| GTTTAACCCCTGCTGAGCTT+AGG | 0.407094 | 3_4:-77860759 | Msa0524390:CDS |
| GTCAATGAATATATCATTCA+AGG | 0.409842 | 3_4:-77857835 | Msa0524390:three_prime_UTR |
| CCATCTTCATAATTTGGTTA+GGG | 0.413959 | 3_4:+77860256 | None:intergenic |
| TCTGGAAGTTGGGTCACTGT+TGG | 0.427782 | 3_4:-77860576 | Msa0524390:CDS |
| TTTAACCCCTGCTGAGCTTA+GGG | 0.429241 | 3_4:-77860758 | Msa0524390:CDS |
| TTGAACGGCGTCTCTGAAAA+CGG | 0.430849 | 3_4:+77860891 | None:intergenic |
| AAATAAATTCTTTATTGTGC+AGG | 0.432010 | 3_4:+77857990 | None:intergenic |
| AGATTCTTTCTCTGGAAGTT+GGG | 0.432795 | 3_4:-77860586 | Msa0524390:CDS |
| AAAGACAGAGAGGCAAGGTT+TGG | 0.444726 | 3_4:-77858256 | Msa0524390:CDS |
| GATTTAGGGTTAGGGTTAGA+GGG | 0.445132 | 3_4:+77860850 | None:intergenic |
| TAGGGTTAGGGTTAGAGGGT+TGG | 0.445470 | 3_4:+77860854 | None:intergenic |
| CGATGGGATGGCTTGTACAC+TGG | 0.447414 | 3_4:-77860193 | Msa0524390:CDS |
| TGGTAATGGATTTAGGGTTA+GGG | 0.451006 | 3_4:+77860842 | None:intergenic |
| CCCTAACCAAATTATGAAGA+TGG | 0.457187 | 3_4:-77860256 | Msa0524390:CDS |
| ATGGGAAGAGCTATTGCATA+TGG | 0.459558 | 3_4:-77860515 | Msa0524390:CDS |
| CCCCAACTTGACAAATTCTC+TGG | 0.465454 | 3_4:-77860802 | Msa0524390:CDS |
| CGGAGAAGGAGAAGCGGGAG+GGG | 0.466441 | 3_4:+77860972 | None:intergenic |
| AAGTTGGGGATCGTCGGTGA+GGG | 0.467511 | 3_4:+77860816 | None:intergenic |
| TCTTAGTTATATTGGTAGTA+GGG | 0.467662 | 3_4:-77857966 | Msa0524390:three_prime_UTR |
| AAATCATCTTCTGTTAATAT+GGG | 0.469854 | 3_4:-77858324 | Msa0524390:CDS |
| ATGGGCACCTCTGTTGATTA+CGG | 0.470419 | 3_4:-77860237 | Msa0524390:CDS |
| AACACAACACACGATGACTT+TGG | 0.476542 | 3_4:+77861079 | None:intergenic |
| ACAGATTCCCTAAGCTCAGC+AGG | 0.478207 | 3_4:+77860751 | None:intergenic |
| ATCTACATTGTTATCAGTTG+GGG | 0.484820 | 3_4:-77857923 | Msa0524390:three_prime_UTR |
| TCTCTGAAAACGGACATATC+AGG | 0.488594 | 3_4:+77860901 | None:intergenic |
| ATCAAGCGGAGAAGGAGAAG+CGG | 0.493496 | 3_4:+77860966 | None:intergenic |
| TGAATATATCATTCAAGGGT+TGG | 0.494428 | 3_4:-77857830 | Msa0524390:three_prime_UTR |
| TTATCTACATTGTTATCAGT+TGG | 0.496099 | 3_4:-77857925 | Msa0524390:three_prime_UTR |
| TCAAGCGGAGAAGGAGAAGC+GGG | 0.501964 | 3_4:+77860967 | None:intergenic |
| TTCAGAAAACAAGTTCAAAT+GGG | 0.504697 | 3_4:-77860533 | Msa0524390:CDS |
| GCGGAGAAGGAGAAGCGGGA+GGG | 0.505756 | 3_4:+77860971 | None:intergenic |
| TTGATTACGGAGTTTGCAAA+GGG | 0.522380 | 3_4:-77860224 | Msa0524390:CDS |
| TCTGACTTGAGATAATCTCT+TGG | 0.522461 | 3_4:+77858860 | None:intergenic |
| ATATTCAGGAATTTGGTGAA+TGG | 0.526400 | 3_4:-77860609 | Msa0524390:intron |
| AGCAGGGGTTAAACATTGGT+TGG | 0.526618 | 3_4:+77860768 | None:intergenic |
| GAAGAAGAATACTTAATGAC+GGG | 0.529158 | 3_4:+77860703 | None:intergenic |
| GTGAACCTTCGAAACTATAT+GGG | 0.530499 | 3_4:+77858049 | None:intergenic |
| TAGTGCCCATATAGTTTCGA+AGG | 0.533679 | 3_4:-77858054 | Msa0524390:three_prime_UTR |
| TGCTGTGTCTTACAAGCATA+GGG | 0.539214 | 3_4:-77860929 | Msa0524390:CDS |
| CACTGTACGAACTGAACTCA+AGG | 0.539230 | 3_4:-77859010 | Msa0524390:CDS |
| AAGAAAATAAATACTACCGC+GGG | 0.542071 | 3_4:-77858106 | Msa0524390:three_prime_UTR |
| ATGCTGTGTCTTACAAGCAT+AGG | 0.543398 | 3_4:-77860930 | Msa0524390:CDS |
| TACTGTCCGCAAGGATGCCA+AGG | 0.550767 | 3_4:-77860385 | Msa0524390:intron |
| TCAATGAATATATCATTCAA+GGG | 0.551217 | 3_4:-77857834 | Msa0524390:three_prime_UTR |
| GTTGGAGTGTTAACTGAGAA+GGG | 0.555349 | 3_4:-77860558 | Msa0524390:CDS |
| TCATCAGCATCAAGCGGAGA+AGG | 0.555395 | 3_4:+77860958 | None:intergenic |
| TAAATACTACCGCGGGGTGG+TGG | 0.556114 | 3_4:-77858099 | Msa0524390:three_prime_UTR |
| CCAGAGAATTTGTCAAGTTG+GGG | 0.563311 | 3_4:+77860802 | None:intergenic |
| TTTGTCAAGTTGGGGATCGT+CGG | 0.563964 | 3_4:+77860810 | None:intergenic |
| TGTTGGAGTGTTAACTGAGA+AGG | 0.564287 | 3_4:-77860559 | Msa0524390:CDS |
| GTTGATTACGGAGTTTGCAA+AGG | 0.565498 | 3_4:-77860225 | Msa0524390:CDS |
| CAAGTTGGGGATCGTCGGTG+AGG | 0.565523 | 3_4:+77860815 | None:intergenic |
| AGAAGAAGAATACTTAATGA+CGG | 0.565529 | 3_4:+77860702 | None:intergenic |
| AGTTGGGGATCGTCGGTGAG+GGG | 0.571103 | 3_4:+77860817 | None:intergenic |
| CATCTTCATAATTTGGTTAG+GGG | 0.573813 | 3_4:+77860257 | None:intergenic |
| GATAAAGCCACAAAGAGTAC+AGG | 0.574304 | 3_4:-77858231 | Msa0524390:CDS |
| CTCTGTCGTGAAGAGAAAGC+AGG | 0.575382 | 3_4:+77861004 | None:intergenic |
| CCTAACCAAATTATGAAGAT+GGG | 0.576980 | 3_4:-77860255 | Msa0524390:CDS |
| GCAGGAGATCCAGATCTTCG+TGG | 0.577212 | 3_4:+77861022 | None:intergenic |
| TCAGAGGAACTGTCAAGAGA+AGG | 0.578844 | 3_4:-77860436 | Msa0524390:CDS |
| TGCAAAGGGAAAAGAGCCGA+TGG | 0.578899 | 3_4:-77860210 | Msa0524390:CDS |
| ATCTGTGGATGGTATCAGAA+AGG | 0.579951 | 3_4:-77858768 | Msa0524390:CDS |
| AGATCTTATTAGTTCGGACG+AGG | 0.580223 | 3_4:-77858193 | Msa0524390:CDS |
| GTGAAATTGTTATCTGTGGA+TGG | 0.582479 | 3_4:-77858779 | Msa0524390:CDS |
| AGCGGAGAAGGAGAAGCGGG+AGG | 0.584047 | 3_4:+77860970 | None:intergenic |
| TGTCATAAGAAACCAGCAGT+TGG | 0.585566 | 3_4:-77858292 | Msa0524390:CDS |
| GCTCAGCAGGGGTTAAACAT+TGG | 0.588791 | 3_4:+77860764 | None:intergenic |
| AGGGAAAAGAGCCGATGGGA+TGG | 0.594074 | 3_4:-77860205 | Msa0524390:CDS |
| AGAATTGAAGAGTGCAAAGA+CGG | 0.594442 | 3_4:+77860407 | None:intergenic |
| AGAGATTATCTCAAGTCAGA+AGG | 0.595620 | 3_4:-77858857 | Msa0524390:CDS |
| AAGAATACTTAATGACGGGT+AGG | 0.599067 | 3_4:+77860707 | None:intergenic |
| CTTGAGTTCAGTTCGTACAG+TGG | 0.599594 | 3_4:+77859011 | None:intergenic |
| GCAAGTGAAATTGTTATCTG+TGG | 0.600173 | 3_4:-77858783 | Msa0524390:CDS |
| ACAACAGCTTCACACTCGCA+AGG | 0.603557 | 3_4:-77858643 | Msa0524390:CDS |
| CTTCAATTCTACTGTCCGCA+AGG | 0.606230 | 3_4:-77860394 | Msa0524390:CDS |
| TGTTTGGTAATGCTTATCAG+AGG | 0.614875 | 3_4:-77860452 | Msa0524390:CDS |
| CAACAGCTTCACACTCGCAA+GGG | 0.617797 | 3_4:-77858642 | Msa0524390:CDS |
| TTTCGACGGACAACAAGGGA+GGG | 0.619606 | 3_4:+77861137 | None:intergenic |
| ATATATCATTCAAGGGTTGG+TGG | 0.622516 | 3_4:-77857827 | Msa0524390:three_prime_UTR |
| AGGAACTGTCAAGAGAAGGA+AGG | 0.627697 | 3_4:-77860432 | Msa0524390:CDS |
| AAAGCAAATGCACAGCGAAG+AGG | 0.629693 | 3_4:-77858447 | Msa0524390:intron |
| TTGGAGTGTTAACTGAGAAG+GGG | 0.630678 | 3_4:-77860557 | Msa0524390:CDS |
| TACGAACTGAACTCAAGGGA+GGG | 0.632715 | 3_4:-77859005 | Msa0524390:intron |
| CAGATTCCCTAAGCTCAGCA+GGG | 0.634673 | 3_4:+77860752 | None:intergenic |
| TCGTCATCATCAGCATCAAG+CGG | 0.640174 | 3_4:+77860952 | None:intergenic |
| ATGGTATCAGAAAGGCATTG+AGG | 0.644692 | 3_4:-77858760 | Msa0524390:intron |
| CAGTGTACAAGCCATCCCAT+CGG | 0.645912 | 3_4:+77860194 | None:intergenic |
| AGAGTAAAGACAGAGAGGCA+AGG | 0.646421 | 3_4:-77858261 | Msa0524390:CDS |
| AATATACCTTGGCATCCTTG+CGG | 0.655962 | 3_4:+77860379 | None:intergenic |
| TTAAAAGAGTAAAGACAGAG+AGG | 0.656016 | 3_4:-77858266 | Msa0524390:CDS |
| GCAAAGGGAAAAGAGCCGAT+GGG | 0.669274 | 3_4:-77860209 | Msa0524390:CDS |
| GTACGAACTGAACTCAAGGG+AGG | 0.674064 | 3_4:-77859006 | Msa0524390:CDS |
| GGTATGAAGACAATCTTGAA+CGG | 0.675223 | 3_4:+77860876 | None:intergenic |
| AGATTCCCTAAGCTCAGCAG+GGG | 0.676546 | 3_4:+77860753 | None:intergenic |
| GAAGAAAATAAATACTACCG+CGG | 0.677777 | 3_4:-77858107 | Msa0524390:three_prime_UTR |
| ACTGTACGAACTGAACTCAA+GGG | 0.685568 | 3_4:-77859009 | Msa0524390:CDS |
| GCAAACTCCGTAATCAACAG+AGG | 0.699830 | 3_4:+77860230 | None:intergenic |
| AAATAAATACTACCGCGGGG+TGG | 0.707092 | 3_4:-77858102 | Msa0524390:three_prime_UTR |
| AGAAAATAAATACTACCGCG+GGG | 0.751461 | 3_4:-77858105 | Msa0524390:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAAATATGAAATAATTAAA+TGG | + | chr3_4:77859785-77859804 | None:intergenic | 10.0% |
| !!! | TTATTTTGATTATTTAACTG+TGG | - | chr3_4:77858756-77858775 | Msa0524390:intron | 15.0% |
| !! | TTTACGTCTATTAATAAATA+TGG | + | chr3_4:77859202-77859221 | None:intergenic | 15.0% |
| !! | CTTTACAAAAGTAATAAAAA+GGG | + | chr3_4:77859562-77859581 | None:intergenic | 15.0% |
| !! | ACTTTACAAAAGTAATAAAA+AGG | + | chr3_4:77859563-77859582 | None:intergenic | 15.0% |
| !!! | TTTATTTCTCTTAGTTATAT+TGG | - | chr3_4:77860917-77860936 | Msa0524390:CDS | 15.0% |
| !!! | AACTTATTATTTAAAACAGT+TGG | - | chr3_4:77861092-77861111 | Msa0524390:five_prime_UTR | 15.0% |
| !! | AAATAAAAAAGAGATTTCAG+AGG | + | chr3_4:77858571-77858590 | None:intergenic | 20.0% |
| !! | AAATTGCATATACAATGATT+GGG | + | chr3_4:77858822-77858841 | None:intergenic | 20.0% |
| !! | TAAATTGCATATACAATGAT+TGG | + | chr3_4:77858823-77858842 | None:intergenic | 20.0% |
| !! | TTAATAGACGTAAAACTATA+TGG | - | chr3_4:77859208-77859227 | Msa0524390:intron | 20.0% |
| !!! | AGAAAAACTAAACTTTGAAA+TGG | - | chr3_4:77859269-77859288 | Msa0524390:intron | 20.0% |
| !!! | TATTACTTTTGTAAAGTTTG+AGG | - | chr3_4:77859365-77859384 | Msa0524390:intron | 20.0% |
| !!! | ATTACTTTTGTAAAGTTTGA+GGG | - | chr3_4:77859366-77859385 | Msa0524390:intron | 20.0% |
| !!! | CTTTTATAAGAACTTGAAAT+AGG | + | chr3_4:77859922-77859941 | None:intergenic | 20.0% |
| !!! | AGACTAACTGTTAATTTTAA+TGG | - | chr3_4:77860303-77860322 | Msa0524390:intron | 20.0% |
| !! | GATAATAAATAACATGTAAC+AGG | + | chr3_4:77860541-77860560 | None:intergenic | 20.0% |
| !!! | ACATGTTATTTATTATCTTC+AGG | - | chr3_4:77860544-77860563 | Msa0524390:CDS | 20.0% |
| !! | AAATCATCTTCTGTTAATAT+GGG | - | chr3_4:77860567-77860586 | Msa0524390:CDS | 20.0% |
| !! | TGAATTAGATCTTATTAGTT+CGG | - | chr3_4:77860692-77860711 | Msa0524390:intron | 20.0% |
| !! | AAATAAATTCTTTATTGTGC+AGG | + | chr3_4:77860904-77860923 | None:intergenic | 20.0% |
| !!! | TACTTAACTTATCTTTTGAA+AGG | + | chr3_4:77861033-77861052 | None:intergenic | 20.0% |
| !! | TCAATGAATATATCATTCAA+GGG | - | chr3_4:77861057-77861076 | Msa0524390:five_prime_UTR | 20.0% |
| !!! | ACTTTGGTTAGTTTTGTTTA+GGG | + | chr3_4:77857799-77857818 | None:intergenic | 25.0% |
| ! | GTGTATCAAAGAAAAGAAAA+AGG | - | chr3_4:77857835-77857854 | Msa0524390:three_prime_UTR | 25.0% |
| ! | AGAAGAAGAATACTTAATGA+CGG | + | chr3_4:77858192-77858211 | None:intergenic | 25.0% |
| ! | ATTCAGAAAACAAGTTCAAA+TGG | - | chr3_4:77858357-77858376 | Msa0524390:intron | 25.0% |
| ! | TTCAGAAAACAAGTTCAAAT+GGG | - | chr3_4:77858358-77858377 | Msa0524390:intron | 25.0% |
| !!! | ACTATTTCTCTTTTCTTGTT+TGG | - | chr3_4:77858423-77858442 | Msa0524390:intron | 25.0% |
| !!! | TTTATTTCTCTTGCTTTTGA+AGG | - | chr3_4:77858584-77858603 | Msa0524390:intron | 25.0% |
| !!! | TTATTTCTCTTGCTTTTGAA+GGG | - | chr3_4:77858585-77858604 | Msa0524390:intron | 25.0% |
| ! | TTGTATATGCAATTTACCAA+AGG | - | chr3_4:77858827-77858846 | Msa0524390:CDS | 25.0% |
| ! | ATCAGACTTATTTCAGTAAA+TGG | + | chr3_4:77858917-77858936 | None:intergenic | 25.0% |
| ! | ATAAGTCTGATTTAAATGTG+TGG | - | chr3_4:77858926-77858945 | Msa0524390:intron | 25.0% |
| ! | GGTGACAAATAAAATAAAAG+AGG | - | chr3_4:77859014-77859033 | Msa0524390:CDS | 25.0% |
| !! | GCAATCTATAAGTCTTATAT+TGG | - | chr3_4:77859230-77859249 | Msa0524390:intron | 25.0% |
| !!! | TTACTTTTGTAAAGTTTGAG+GGG | - | chr3_4:77859367-77859386 | Msa0524390:intron | 25.0% |
| ! | AGAAACAGAATAATAATCCT+GGG | + | chr3_4:77859597-77859616 | None:intergenic | 25.0% |
| ! | TGTAAGAAGAAAAAGAAACA+TGG | + | chr3_4:77859657-77859676 | None:intergenic | 25.0% |
| ! | CCTGAAATAACAAAGATTAA+TGG | + | chr3_4:77859722-77859741 | None:intergenic | 25.0% |
| !!! | CCATTAATCTTTGTTATTTC+AGG | - | chr3_4:77859719-77859738 | Msa0524390:intron | 25.0% |
| !!! | TTTTGATTTCATATGACATG+TGG | - | chr3_4:77859954-77859973 | Msa0524390:intron | 25.0% |
| !!! | CTTTTTCAAGTTTGTTTTGT+CGG | + | chr3_4:77860083-77860102 | None:intergenic | 25.0% |
| !!! | GGTTCTTTTTTCATCATTTT+TGG | + | chr3_4:77860407-77860426 | None:intergenic | 25.0% |
| ! | GAAATCATCTTCTGTTAATA+TGG | - | chr3_4:77860566-77860585 | Msa0524390:CDS | 25.0% |
| !! | TCTTAGTTATATTGGTAGTA+GGG | - | chr3_4:77860925-77860944 | Msa0524390:CDS | 25.0% |
| ! | GTAGATAACCTAGTAAAATT+TGG | + | chr3_4:77860954-77860973 | None:intergenic | 25.0% |
| ! | TTATCTACATTGTTATCAGT+TGG | - | chr3_4:77860966-77860985 | Msa0524390:CDS | 25.0% |
| ! | TATCTACATTGTTATCAGTT+GGG | - | chr3_4:77860967-77860986 | Msa0524390:CDS | 25.0% |
| ! | GTCAATGAATATATCATTCA+AGG | - | chr3_4:77861056-77861075 | Msa0524390:five_prime_UTR | 25.0% |
| !!! | GACTTTGGTTAGTTTTGTTT+AGG | + | chr3_4:77857800-77857819 | None:intergenic | 30.0% |
| GAAGAAGAATACTTAATGAC+GGG | + | chr3_4:77858191-77858210 | None:intergenic | 30.0% | |
| TCTGTGTATATTCAGGAATT+TGG | - | chr3_4:77858275-77858294 | Msa0524390:CDS | 30.0% | |
| ! | ATATTCAGGAATTTGGTGAA+TGG | - | chr3_4:77858282-77858301 | Msa0524390:CDS | 30.0% |
| AGCTATTGCATATGGAAAAT+TGG | - | chr3_4:77858384-77858403 | Msa0524390:intron | 30.0% | |
| ! | CATATGGAAAATTGGTTCTT+TGG | - | chr3_4:77858392-77858411 | Msa0524390:intron | 30.0% |
| AGATGATAAGGAATATACCT+TGG | + | chr3_4:77858526-77858545 | None:intergenic | 30.0% | |
| AAAAATGGAAGCAGATGATA+AGG | + | chr3_4:77858538-77858557 | None:intergenic | 30.0% | |
| CATCTTCATAATTTGGTTAG+GGG | + | chr3_4:77858637-77858656 | None:intergenic | 30.0% | |
| CCATCTTCATAATTTGGTTA+GGG | + | chr3_4:77858638-77858657 | None:intergenic | 30.0% | |
| CCTAACCAAATTATGAAGAT+GGG | - | chr3_4:77858636-77858655 | Msa0524390:CDS | 30.0% | |
| TTTAACTGTGGAATTGCAAT+AGG | - | chr3_4:77858768-77858787 | Msa0524390:CDS | 30.0% | |
| CTGATTTAAATGTGTGGAAT+TGG | - | chr3_4:77858932-77858951 | Msa0524390:intron | 30.0% | |
| CAGATGTGAATTATGATTCA+TGG | + | chr3_4:77859095-77859114 | None:intergenic | 30.0% | |
| !!! | GAAAGCTCAATCTTGTTTTT+AGG | - | chr3_4:77859291-77859310 | Msa0524390:intron | 30.0% |
| CTTTGTATATTCCCTTAAAC+TGG | + | chr3_4:77859319-77859338 | None:intergenic | 30.0% | |
| ATAATAATCCTGGGACATAA+TGG | + | chr3_4:77859588-77859607 | None:intergenic | 30.0% | |
| CAGAAACAGAATAATAATCC+TGG | + | chr3_4:77859598-77859617 | None:intergenic | 30.0% | |
| !! | GAAAAGTATTAATCGAAGTC+TGG | + | chr3_4:77859626-77859645 | None:intergenic | 30.0% |
| AAAAAGAAACATGGTTGACA+AGG | + | chr3_4:77859648-77859667 | None:intergenic | 30.0% | |
| ATCCACTAACCTATAACTTA+TGG | - | chr3_4:77859835-77859854 | Msa0524390:intron | 30.0% | |
| GAAACTTAAGAACAGCATTT+AGG | - | chr3_4:77860008-77860027 | Msa0524390:intron | 30.0% | |
| TTAAAAGAGTAAAGACAGAG+AGG | - | chr3_4:77860625-77860644 | Msa0524390:intron | 30.0% | |
| GAAGAAAATAAATACTACCG+CGG | - | chr3_4:77860784-77860803 | Msa0524390:CDS | 30.0% | |
| AAGAAAATAAATACTACCGC+GGG | - | chr3_4:77860785-77860804 | Msa0524390:CDS | 30.0% | |
| ! | CTCTTAGTTATATTGGTAGT+AGG | - | chr3_4:77860924-77860943 | Msa0524390:CDS | 30.0% |
| ! | TAGGGATACCAAATTTTACT+AGG | - | chr3_4:77860943-77860962 | Msa0524390:CDS | 30.0% |
| ATCTACATTGTTATCAGTTG+GGG | - | chr3_4:77860968-77860987 | Msa0524390:CDS | 30.0% | |
| TGAATATATCATTCAAGGGT+TGG | - | chr3_4:77861061-77861080 | Msa0524390:five_prime_UTR | 30.0% | |
| !! | GTTTTCAAGCTGATTTTCGA+CGG | + | chr3_4:77857771-77857790 | None:intergenic | 35.0% |
| GGTATGAAGACAATCTTGAA+CGG | + | chr3_4:77858018-77858037 | None:intergenic | 35.0% | |
| !! | TGGTAATGGATTTAGGGTTA+GGG | + | chr3_4:77858052-77858071 | None:intergenic | 35.0% |
| !! | TTGGTAATGGATTTAGGGTT+AGG | + | chr3_4:77858053-77858072 | None:intergenic | 35.0% |
| ACCAGAGAATTTGTCAAGTT+GGG | + | chr3_4:77858093-77858112 | None:intergenic | 35.0% | |
| !! | AAGAATACTTAATGACGGGT+AGG | + | chr3_4:77858187-77858206 | None:intergenic | 35.0% |
| GATTCTGTCTGTGTATATTC+AGG | - | chr3_4:77858268-77858287 | Msa0524390:CDS | 35.0% | |
| ! | AGATTCTTTCTCTGGAAGTT+GGG | - | chr3_4:77858305-77858324 | Msa0524390:CDS | 35.0% |
| !! | TGTTTGGTAATGCTTATCAG+AGG | - | chr3_4:77858439-77858458 | Msa0524390:intron | 35.0% |
| ! | AGAATTGAAGAGTGCAAAGA+CGG | + | chr3_4:77858487-77858506 | None:intergenic | 35.0% |
| CCCTAACCAAATTATGAAGA+TGG | - | chr3_4:77858635-77858654 | Msa0524390:CDS | 35.0% | |
| CCCATCTTCATAATTTGGTT+AGG | + | chr3_4:77858639-77858658 | None:intergenic | 35.0% | |
| TTGATTACGGAGTTTGCAAA+GGG | - | chr3_4:77858667-77858686 | Msa0524390:intron | 35.0% | |
| GTAGTTACTCTTTACTCCTT+TGG | + | chr3_4:77858846-77858865 | None:intergenic | 35.0% | |
| ! | TTGATAGCCATTCAATAGCT+TGG | - | chr3_4:77859062-77859081 | Msa0524390:CDS | 35.0% |
| !!! | TGTTTTTAGGTGCCAGTTTA+AGG | - | chr3_4:77859304-77859323 | Msa0524390:intron | 35.0% |
| !!! | GTTTTTAGGTGCCAGTTTAA+GGG | - | chr3_4:77859305-77859324 | Msa0524390:intron | 35.0% |
| TAAAGTTGTTGTCATGTGAC+TGG | - | chr3_4:77859408-77859427 | Msa0524390:intron | 35.0% | |
| ! | TAACCCTCTTTTTACACAAG+AGG | + | chr3_4:77859463-77859482 | None:intergenic | 35.0% |
| TCTTGTGTAAAAAGAGGGTT+AGG | - | chr3_4:77859462-77859481 | Msa0524390:intron | 35.0% | |
| GTTGCATACAATACACCAAA+TGG | - | chr3_4:77859484-77859503 | Msa0524390:intron | 35.0% | |
| CATACAATACACCAAATGGT+GGG | - | chr3_4:77859488-77859507 | Msa0524390:intron | 35.0% | |
| AAGTAATAAAAAGGGCAACC+CGG | + | chr3_4:77859554-77859573 | None:intergenic | 35.0% | |
| TAAAGTTTCCATTATGTCCC+AGG | - | chr3_4:77859577-77859596 | Msa0524390:intron | 35.0% | |
| !! | TTTGTTATTTCAGGCGTCAA+GGG | - | chr3_4:77859728-77859747 | Msa0524390:intron | 35.0% |
| ATCAGCATTCTATTGTAGCA+AGG | - | chr3_4:77859806-77859825 | Msa0524390:intron | 35.0% | |
| TGCCATAAGTTATAGGTTAG+TGG | + | chr3_4:77859840-77859859 | None:intergenic | 35.0% | |
| TGCTTTCTGCCATAAGTTAT+AGG | + | chr3_4:77859847-77859866 | None:intergenic | 35.0% | |
| GTGGATGTAACATATACATG+TGG | - | chr3_4:77859973-77859992 | Msa0524390:intron | 35.0% | |
| ! | TCTGACTTGAGATAATCTCT+TGG | + | chr3_4:77860034-77860053 | None:intergenic | 35.0% |
| AGAGATTATCTCAAGTCAGA+AGG | - | chr3_4:77860034-77860053 | Msa0524390:intron | 35.0% | |
| GCAAGTGAAATTGTTATCTG+TGG | - | chr3_4:77860108-77860127 | Msa0524390:intron | 35.0% | |
| GTGAAATTGTTATCTGTGGA+TGG | - | chr3_4:77860112-77860131 | Msa0524390:intron | 35.0% | |
| !! | AATTTTGATACCAGCAATGC+AGG | - | chr3_4:77860218-77860237 | Msa0524390:CDS | 35.0% |
| !! | AGATTTCTTTCTGAGATTGC+AGG | - | chr3_4:77860275-77860294 | Msa0524390:CDS | 35.0% |
| ! | CTTTGATCATTTGGAGTCTT+TGG | + | chr3_4:77860428-77860447 | None:intergenic | 35.0% |
| GTGCATTTGCTTTGATCATT+TGG | + | chr3_4:77860437-77860456 | None:intergenic | 35.0% | |
| TGAGATGCTAAAAAGGATTC+AGG | - | chr3_4:77860467-77860486 | Msa0524390:CDS | 35.0% | |
| AGAAAATAAATACTACCGCG+GGG | - | chr3_4:77860786-77860805 | Msa0524390:CDS | 35.0% | |
| GTGAACCTTCGAAACTATAT+GGG | + | chr3_4:77860845-77860864 | None:intergenic | 35.0% | |
| AGTGAACCTTCGAAACTATA+TGG | + | chr3_4:77860846-77860865 | None:intergenic | 35.0% | |
| TTCTTTATTGTGCAGGACTT+TGG | + | chr3_4:77860897-77860916 | None:intergenic | 35.0% | |
| ATATATCATTCAAGGGTTGG+TGG | - | chr3_4:77861064-77861083 | Msa0524390:five_prime_UTR | 35.0% | |
| ! | TGATTTTCGACGGACAACAA+GGG | + | chr3_4:77857761-77857780 | None:intergenic | 40.0% |
| AACACAACACACGATGACTT+TGG | + | chr3_4:77857815-77857834 | None:intergenic | 40.0% | |
| ATGCTGTGTCTTACAAGCAT+AGG | - | chr3_4:77857961-77857980 | Msa0524390:three_prime_UTR | 40.0% | |
| TGCTGTGTCTTACAAGCATA+GGG | - | chr3_4:77857962-77857981 | Msa0524390:three_prime_UTR | 40.0% | |
| ! | TCTCTGAAAACGGACATATC+AGG | + | chr3_4:77857993-77858012 | None:intergenic | 40.0% |
| ! | GATTTAGGGTTAGGGTTAGA+GGG | + | chr3_4:77858044-77858063 | None:intergenic | 40.0% |
| !! | GGGGTTTGGTAATGGATTTA+GGG | + | chr3_4:77858058-77858077 | None:intergenic | 40.0% |
| !! | AGGGGTTTGGTAATGGATTT+AGG | + | chr3_4:77858059-77858078 | None:intergenic | 40.0% |
| ! | CCAGAGAATTTGTCAAGTTG+GGG | + | chr3_4:77858092-77858111 | None:intergenic | 40.0% |
| GACCAGAGAATTTGTCAAGT+TGG | + | chr3_4:77858094-77858113 | None:intergenic | 40.0% | |
| GTGAATGGAGATTCTTTCTC+TGG | - | chr3_4:77858297-77858316 | Msa0524390:CDS | 40.0% | |
| ! | GAGATTCTTTCTCTGGAAGT+TGG | - | chr3_4:77858304-77858323 | Msa0524390:CDS | 40.0% |
| ! | TGTTGGAGTGTTAACTGAGA+AGG | - | chr3_4:77858332-77858351 | Msa0524390:intron | 40.0% |
| ! | GTTGGAGTGTTAACTGAGAA+GGG | - | chr3_4:77858333-77858352 | Msa0524390:intron | 40.0% |
| ! | TTGGAGTGTTAACTGAGAAG+GGG | - | chr3_4:77858334-77858353 | Msa0524390:intron | 40.0% |
| ATGGGAAGAGCTATTGCATA+TGG | - | chr3_4:77858376-77858395 | Msa0524390:intron | 40.0% | |
| AATATACCTTGGCATCCTTG+CGG | + | chr3_4:77858515-77858534 | None:intergenic | 40.0% | |
| AGAGGCGATGGTTGAAAAAA+TGG | + | chr3_4:77858553-77858572 | None:intergenic | 40.0% | |
| AAAAGAGATTTCAGAGGCGA+TGG | + | chr3_4:77858565-77858584 | None:intergenic | 40.0% | |
| !! | CTCTTGCTTTTGAAGGGTAA+TGG | - | chr3_4:77858591-77858610 | Msa0524390:intron | 40.0% |
| AGGTGCCCATCTTCATAATT+TGG | + | chr3_4:77858644-77858663 | None:intergenic | 40.0% | |
| GTTGATTACGGAGTTTGCAA+AGG | - | chr3_4:77858666-77858685 | Msa0524390:intron | 40.0% | |
| ATTTGTCACCACAATGTGAC+AGG | + | chr3_4:77859004-77859023 | None:intergenic | 40.0% | |
| ATTGCGACCAAGCTATTGAA+TGG | + | chr3_4:77859072-77859091 | None:intergenic | 40.0% | |
| ! | GAGCAGTATCAGCTTTAACA+TGG | - | chr3_4:77859123-77859142 | Msa0524390:intron | 40.0% |
| GCATAACAAGAAACCTAGCA+TGG | + | chr3_4:77859162-77859181 | None:intergenic | 40.0% | |
| !! | TATGGCGTGCTCTGAAAAAA+TGG | + | chr3_4:77859184-77859203 | None:intergenic | 40.0% |
| TAAAGTTTGAGGGGTAACCT+TGG | - | chr3_4:77859376-77859395 | Msa0524390:intron | 40.0% | |
| ACAGCCTCTTGTGTAAAAAG+AGG | - | chr3_4:77859456-77859475 | Msa0524390:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAAGA+GGG | - | chr3_4:77859457-77859476 | Msa0524390:intron | 40.0% | |
| GCATACAATACACCAAATGG+TGG | - | chr3_4:77859487-77859506 | Msa0524390:intron | 40.0% | |
| !! | CTTTGTTATTTCAGGCGTCA+AGG | - | chr3_4:77859727-77859746 | Msa0524390:intron | 40.0% |
| ACTGTACGAACTGAACTCAA+GGG | - | chr3_4:77859882-77859901 | Msa0524390:intron | 40.0% | |
| ATCTGTGGATGGTATCAGAA+AGG | - | chr3_4:77860123-77860142 | Msa0524390:intron | 40.0% | |
| !! | ATGGTATCAGAAAGGCATTG+AGG | - | chr3_4:77860131-77860150 | Msa0524390:intron | 40.0% |
| TTGCAGAGAAAGAACTCAAG+TGG | + | chr3_4:77860185-77860204 | None:intergenic | 40.0% | |
| !!! | TGTTACTTTTCCTGCATTGC+TGG | + | chr3_4:77860231-77860250 | None:intergenic | 40.0% |
| !! | AGCTGACTTTTACCCCTTTA+CGG | - | chr3_4:77860360-77860379 | Msa0524390:intron | 40.0% |
| TTCCTGTAAACAGCCGTAAA+GGG | + | chr3_4:77860376-77860395 | None:intergenic | 40.0% | |
| TTTCCTGTAAACAGCCGTAA+AGG | + | chr3_4:77860377-77860396 | None:intergenic | 40.0% | |
| GAAGAGGTGAGATGCTAAAA+AGG | - | chr3_4:77860460-77860479 | Msa0524390:CDS | 40.0% | |
| CTTATGCATGTGTCCATTAG+AGG | - | chr3_4:77860506-77860525 | Msa0524390:CDS | 40.0% | |
| TGTCATAAGAAACCAGCAGT+TGG | - | chr3_4:77860599-77860618 | Msa0524390:CDS | 40.0% | |
| ! | CTCTTTTAACATCCAACTGC+TGG | + | chr3_4:77860614-77860633 | None:intergenic | 40.0% |
| ! | GATAAAGCCACAAAGAGTAC+AGG | - | chr3_4:77860660-77860679 | Msa0524390:intron | 40.0% |
| AGATCTTATTAGTTCGGACG+AGG | - | chr3_4:77860698-77860717 | Msa0524390:intron | 40.0% | |
| TAGTGCCCATATAGTTTCGA+AGG | - | chr3_4:77860837-77860856 | Msa0524390:CDS | 40.0% | |
| ! | CTGATTTTCGACGGACAACA+AGG | + | chr3_4:77857762-77857781 | None:intergenic | 45.0% |
| TCGTCATCATCAGCATCAAG+CGG | + | chr3_4:77857942-77857961 | None:intergenic | 45.0% | |
| ! | TTGAACGGCGTCTCTGAAAA+CGG | + | chr3_4:77858003-77858022 | None:intergenic | 45.0% |
| ! | GGATTTAGGGTTAGGGTTAG+AGG | + | chr3_4:77858045-77858064 | None:intergenic | 45.0% |
| !! | TTTGTCAAGTTGGGGATCGT+CGG | + | chr3_4:77858084-77858103 | None:intergenic | 45.0% |
| CCCCAACTTGACAAATTCTC+TGG | - | chr3_4:77858089-77858108 | Msa0524390:three_prime_UTR | 45.0% | |
| AGCAGGGGTTAAACATTGGT+TGG | + | chr3_4:77858126-77858145 | None:intergenic | 45.0% | |
| TTTAACCCCTGCTGAGCTTA+GGG | - | chr3_4:77858133-77858152 | Msa0524390:three_prime_UTR | 45.0% | |
| TCAGAGGAACTGTCAAGAGA+AGG | - | chr3_4:77858455-77858474 | Msa0524390:CDS | 45.0% | |
| AGGAACTGTCAAGAGAAGGA+AGG | - | chr3_4:77858459-77858478 | Msa0524390:CDS | 45.0% | |
| CTTCAATTCTACTGTCCGCA+AGG | - | chr3_4:77858497-77858516 | Msa0524390:CDS | 45.0% | |
| ! | ATGGGCACCTCTGTTGATTA+CGG | - | chr3_4:77858654-77858673 | Msa0524390:CDS | 45.0% |
| GCAAACTCCGTAATCAACAG+AGG | + | chr3_4:77858664-77858683 | None:intergenic | 45.0% | |
| GTGTGGAATTGGACACTAGT+TGG | - | chr3_4:77858943-77858962 | Msa0524390:intron | 45.0% | |
| GCATTTGTCCTGTCACATTG+TGG | - | chr3_4:77858993-77859012 | Msa0524390:intron | 45.0% | |
| AACAAGAAACCTAGCATGGC+AGG | + | chr3_4:77859158-77859177 | None:intergenic | 45.0% | |
| GTTGTTGTCATGTGACTGGA+AGG | - | chr3_4:77859412-77859431 | Msa0524390:intron | 45.0% | |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr3_4:77859452-77859471 | None:intergenic | 45.0% |
| CTTGAGTTCAGTTCGTACAG+TGG | + | chr3_4:77859883-77859902 | None:intergenic | 45.0% | |
| CACTGTACGAACTGAACTCA+AGG | - | chr3_4:77859881-77859900 | Msa0524390:intron | 45.0% | |
| TACGAACTGAACTCAAGGGA+GGG | - | chr3_4:77859886-77859905 | Msa0524390:intron | 45.0% | |
| !!! | AAGTTTGTTTTGTCGGCGAG+GGG | + | chr3_4:77860076-77860095 | None:intergenic | 45.0% |
| !!! | CAAGTTTGTTTTGTCGGCGA+GGG | + | chr3_4:77860077-77860096 | None:intergenic | 45.0% |
| !!! | TCAAGTTTGTTTTGTCGGCG+AGG | + | chr3_4:77860078-77860097 | None:intergenic | 45.0% |
| TCCTGTAAACAGCCGTAAAG+GGG | + | chr3_4:77860375-77860394 | None:intergenic | 45.0% | |
| AAAGCAAATGCACAGCGAAG+AGG | - | chr3_4:77860444-77860463 | Msa0524390:CDS | 45.0% | |
| CAGGTGTGTTAAGCCTCTAA+TGG | + | chr3_4:77860522-77860541 | None:intergenic | 45.0% | |
| AGAGTAAAGACAGAGAGGCA+AGG | - | chr3_4:77860630-77860649 | Msa0524390:intron | 45.0% | |
| AAAGACAGAGAGGCAAGGTT+TGG | - | chr3_4:77860635-77860654 | Msa0524390:intron | 45.0% | |
| CATCTTGCCTGTACTCTTTG+TGG | + | chr3_4:77860670-77860689 | None:intergenic | 45.0% | |
| AAATAAATACTACCGCGGGG+TGG | - | chr3_4:77860789-77860808 | Msa0524390:CDS | 45.0% | |
| ! | TAATTTTTACCACCACCCCG+CGG | + | chr3_4:77860804-77860823 | None:intergenic | 45.0% |
| TTTCGACGGACAACAAGGGA+GGG | + | chr3_4:77857757-77857776 | None:intergenic | 50.0% | |
| ! | TTTTCGACGGACAACAAGGG+AGG | + | chr3_4:77857758-77857777 | None:intergenic | 50.0% |
| GTCGTCAAACCACGAAGATC+TGG | - | chr3_4:77857860-77857879 | Msa0524390:three_prime_UTR | 50.0% | |
| CTCTGTCGTGAAGAGAAAGC+AGG | + | chr3_4:77857890-77857909 | None:intergenic | 50.0% | |
| ATCAAGCGGAGAAGGAGAAG+CGG | + | chr3_4:77857928-77857947 | None:intergenic | 50.0% | |
| TCATCAGCATCAAGCGGAGA+AGG | + | chr3_4:77857936-77857955 | None:intergenic | 50.0% | |
| AGGGTTAGGGTTAGAGGGTT+GGG | + | chr3_4:77858039-77858058 | None:intergenic | 50.0% | |
| TAGGGTTAGGGTTAGAGGGT+TGG | + | chr3_4:77858040-77858059 | None:intergenic | 50.0% | |
| GCTCAGCAGGGGTTAAACAT+TGG | + | chr3_4:77858130-77858149 | None:intergenic | 50.0% | |
| GTTTAACCCCTGCTGAGCTT+AGG | - | chr3_4:77858132-77858151 | Msa0524390:three_prime_UTR | 50.0% | |
| AGATTCCCTAAGCTCAGCAG+GGG | + | chr3_4:77858141-77858160 | None:intergenic | 50.0% | |
| CAGATTCCCTAAGCTCAGCA+GGG | + | chr3_4:77858142-77858161 | None:intergenic | 50.0% | |
| ACAGATTCCCTAAGCTCAGC+AGG | + | chr3_4:77858143-77858162 | None:intergenic | 50.0% | |
| TCTGGAAGTTGGGTCACTGT+TGG | - | chr3_4:77858315-77858334 | Msa0524390:CDS | 50.0% | |
| TGCAAAGGGAAAAGAGCCGA+TGG | - | chr3_4:77858681-77858700 | Msa0524390:intron | 50.0% | |
| GCAAAGGGAAAAGAGCCGAT+GGG | - | chr3_4:77858682-77858701 | Msa0524390:intron | 50.0% | |
| CAGTGTACAAGCCATCCCAT+CGG | + | chr3_4:77858700-77858719 | None:intergenic | 50.0% | |
| ATACATGTGCCTGCCATGCT+AGG | - | chr3_4:77859146-77859165 | Msa0524390:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr3_4:77859396-77859415 | None:intergenic | 50.0% | |
| GTCATGTGACTGGAAGGTCA+CGG | - | chr3_4:77859418-77859437 | Msa0524390:intron | 50.0% | |
| TCATGTGACTGGAAGGTCAC+GGG | - | chr3_4:77859419-77859438 | Msa0524390:intron | 50.0% | |
| GTACGAACTGAACTCAAGGG+AGG | - | chr3_4:77859885-77859904 | Msa0524390:intron | 50.0% | |
| !!! | AGTTTGTTTTGTCGGCGAGG+GGG | + | chr3_4:77860075-77860094 | None:intergenic | 50.0% |
| ACAACAGCTTCACACTCGCA+AGG | - | chr3_4:77860248-77860267 | Msa0524390:CDS | 50.0% | |
| CAACAGCTTCACACTCGCAA+GGG | - | chr3_4:77860249-77860268 | Msa0524390:CDS | 50.0% | |
| ACCCCTTTACGGCTGTTTAC+AGG | - | chr3_4:77860371-77860390 | Msa0524390:intron | 50.0% | |
| GCAGGAGATCCAGATCTTCG+TGG | + | chr3_4:77857872-77857891 | None:intergenic | 55.0% | |
| TCAAGCGGAGAAGGAGAAGC+GGG | + | chr3_4:77857927-77857946 | None:intergenic | 55.0% | |
| ! | GTCGGTGAGGGGTTTGGTAA+TGG | + | chr3_4:77858066-77858085 | None:intergenic | 55.0% |
| AAGTTGGGGATCGTCGGTGA+GGG | + | chr3_4:77858078-77858097 | None:intergenic | 55.0% | |
| TACTGTCCGCAAGGATGCCA+AGG | - | chr3_4:77858506-77858525 | Msa0524390:intron | 55.0% | |
| AGGGAAAAGAGCCGATGGGA+TGG | - | chr3_4:77858686-77858705 | Msa0524390:intron | 55.0% | |
| ! | CGATGGGATGGCTTGTACAC+TGG | - | chr3_4:77858698-77858717 | Msa0524390:intron | 55.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr3_4:77859431-77859450 | Msa0524390:intron | 55.0% | |
| ! | CAAATGGTGGGACCCCTTCT+CGG | - | chr3_4:77859500-77859519 | Msa0524390:intron | 55.0% |
| CTAAAGCTCCCGCATACGCA+GGG | + | chr3_4:77859527-77859546 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | + | chr3_4:77859528-77859547 | None:intergenic | 55.0% | |
| ! | ATGCGGGAGCTTTAGTGCAC+CGG | - | chr3_4:77859532-77859551 | Msa0524390:intron | 55.0% |
| TAAATACTACCGCGGGGTGG+TGG | - | chr3_4:77860792-77860811 | Msa0524390:CDS | 55.0% | |
| AGTTGGGGATCGTCGGTGAG+GGG | + | chr3_4:77858077-77858096 | None:intergenic | 60.0% | |
| ! | CAAGTTGGGGATCGTCGGTG+AGG | + | chr3_4:77858079-77858098 | None:intergenic | 60.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr3_4:77859385-77859404 | Msa0524390:intron | 60.0% | |
| CGAGAAGGGGTCCCACCATT+TGG | + | chr3_4:77859502-77859521 | None:intergenic | 60.0% | |
| CATACGCAGGGTCCGAGAAG+GGG | + | chr3_4:77859515-77859534 | None:intergenic | 60.0% | |
| GCATACGCAGGGTCCGAGAA+GGG | + | chr3_4:77859516-77859535 | None:intergenic | 60.0% | |
| CTTCTCGGACCCTGCGTATG+CGG | - | chr3_4:77859515-77859534 | Msa0524390:intron | 60.0% | |
| TTCTCGGACCCTGCGTATGC+GGG | - | chr3_4:77859516-77859535 | Msa0524390:intron | 60.0% | |
| ! | TGCGGGAGCTTTAGTGCACC+GGG | - | chr3_4:77859533-77859552 | Msa0524390:intron | 60.0% |
| GGAGAAGCGGGAGGGGTTTC+AGG | + | chr3_4:77857915-77857934 | None:intergenic | 65.0% | |
| CGGAGAAGGAGAAGCGGGAG+GGG | + | chr3_4:77857922-77857941 | None:intergenic | 65.0% | |
| GCGGAGAAGGAGAAGCGGGA+GGG | + | chr3_4:77857923-77857942 | None:intergenic | 65.0% | |
| AGCGGAGAAGGAGAAGCGGG+AGG | + | chr3_4:77857924-77857943 | None:intergenic | 65.0% | |
| GGGATCGTCGGTGAGGGGTT+TGG | + | chr3_4:77858072-77858091 | None:intergenic | 65.0% | |
| CGCATACGCAGGGTCCGAGA+AGG | + | chr3_4:77859517-77859536 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 77857745 | 77861168 | 77857745 | ID=Msa0524390;Name=Msa0524390 |
| chr3_4 | mRNA | 77857745 | 77861168 | 77857745 | ID=Msa0524390-mRNA-1;Parent=Msa0524390;Name=Msa0524390-mRNA-1;_AED=0.09;_eAED=0.09;_QI=113|0.85|0.87|1|1|1|8|440|410 |
| chr3_4 | exon | 77857745 | 77858347 | 77857745 | ID=Msa0524390-mRNA-1:exon:22927;Parent=Msa0524390-mRNA-1 |
| chr3_4 | exon | 77858448 | 77858520 | 77858448 | ID=Msa0524390-mRNA-1:exon:22926;Parent=Msa0524390-mRNA-1 |
| chr3_4 | exon | 77858617 | 77858681 | 77858617 | ID=Msa0524390-mRNA-1:exon:22925;Parent=Msa0524390-mRNA-1 |
| chr3_4 | exon | 77858761 | 77858904 | 77858761 | ID=Msa0524390-mRNA-1:exon:22924;Parent=Msa0524390-mRNA-1 |
| chr3_4 | exon | 77859006 | 77859089 | 77859006 | ID=Msa0524390-mRNA-1:exon:22923;Parent=Msa0524390-mRNA-1 |
| chr3_4 | exon | 77860183 | 77860307 | 77860183 | ID=Msa0524390-mRNA-1:exon:22922;Parent=Msa0524390-mRNA-1 |
| chr3_4 | exon | 77860386 | 77860623 | 77860386 | ID=Msa0524390-mRNA-1:exon:22921;Parent=Msa0524390-mRNA-1 |
| chr3_4 | exon | 77860715 | 77861168 | 77860715 | ID=Msa0524390-mRNA-1:exon:22920;Parent=Msa0524390-mRNA-1 |
| chr3_4 | five_prime_UTR | 77861056 | 77861168 | 77861056 | ID=Msa0524390-mRNA-1:five_prime_utr;Parent=Msa0524390-mRNA-1 |
| chr3_4 | CDS | 77860715 | 77861055 | 77860715 | ID=Msa0524390-mRNA-1:cds;Parent=Msa0524390-mRNA-1 |
| chr3_4 | CDS | 77860386 | 77860623 | 77860386 | ID=Msa0524390-mRNA-1:cds;Parent=Msa0524390-mRNA-1 |
| chr3_4 | CDS | 77860183 | 77860307 | 77860183 | ID=Msa0524390-mRNA-1:cds;Parent=Msa0524390-mRNA-1 |
| chr3_4 | CDS | 77859006 | 77859089 | 77859006 | ID=Msa0524390-mRNA-1:cds;Parent=Msa0524390-mRNA-1 |
| chr3_4 | CDS | 77858761 | 77858904 | 77858761 | ID=Msa0524390-mRNA-1:cds;Parent=Msa0524390-mRNA-1 |
| chr3_4 | CDS | 77858617 | 77858681 | 77858617 | ID=Msa0524390-mRNA-1:cds;Parent=Msa0524390-mRNA-1 |
| chr3_4 | CDS | 77858448 | 77858520 | 77858448 | ID=Msa0524390-mRNA-1:cds;Parent=Msa0524390-mRNA-1 |
| chr3_4 | CDS | 77858185 | 77858347 | 77858185 | ID=Msa0524390-mRNA-1:cds;Parent=Msa0524390-mRNA-1 |
| chr3_4 | three_prime_UTR | 77857745 | 77858184 | 77857745 | ID=Msa0524390-mRNA-1:three_prime_utr;Parent=Msa0524390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
