Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417630 | sp|Q680B7|XYN4_ARATH | 34.601 | 552 | 318 | 13 | 64 | 594 | 32 | 561 | 7.62e-97 | 310 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417630 | A0A396J1W7 | 92.014 | 576 | 21 | 8 | 30 | 598 | 2 | 559 | 0.0 | 1058 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1365000 | Msa1417630 | 0.957552 | 2.059915e-115 | -8.615850e-47 |
| Msa1367430 | Msa1417630 | 0.935583 | 6.744335e-97 | -8.615850e-47 |
| Msa1417630 | Msa1435580 | 0.925729 | 1.236487e-90 | -8.615850e-47 |
| Msa0639370 | Msa1417630 | 0.800892 | 1.164283e-48 | -8.615850e-47 |
| Msa0386270 | Msa1417630 | 0.803064 | 4.166566e-49 | -8.615850e-47 |
| Msa0524230 | Msa1417630 | 0.931937 | 1.801712e-94 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417630 | MtrunA17_Chr3g0145541 | 92.014 | 576 | 21 | 8 | 30 | 598 | 2 | 559 | 0.0 | 1058 |
| Msa1417630 | MtrunA17_Chr5g0421191 | 39.201 | 551 | 307 | 10 | 43 | 577 | 4 | 542 | 2.08e-128 | 389 |
| Msa1417630 | MtrunA17_Chr4g0037551 | 39.962 | 533 | 288 | 13 | 71 | 585 | 32 | 550 | 6.00e-127 | 385 |
| Msa1417630 | MtrunA17_Chr7g0223191 | 38.772 | 521 | 290 | 10 | 72 | 574 | 4 | 513 | 5.34e-124 | 376 |
| Msa1417630 | MtrunA17_Chr1g0207241 | 38.290 | 538 | 289 | 11 | 45 | 557 | 23 | 542 | 2.77e-113 | 350 |
| Msa1417630 | MtrunA17_Chr1g0207201 | 40.855 | 421 | 236 | 5 | 160 | 574 | 33 | 446 | 3.10e-109 | 336 |
| Msa1417630 | MtrunA17_Chr1g0207211 | 35.978 | 542 | 298 | 10 | 64 | 574 | 31 | 554 | 4.02e-109 | 339 |
| Msa1417630 | MtrunA17_Chr1g0207231 | 38.876 | 445 | 255 | 6 | 160 | 594 | 33 | 470 | 3.80e-107 | 330 |
| Msa1417630 | MtrunA17_Chr3g0135341 | 36.508 | 441 | 252 | 11 | 169 | 598 | 317 | 740 | 2.64e-76 | 257 |
| Msa1417630 | MtrunA17_Chr1g0151951 | 34.096 | 437 | 270 | 7 | 169 | 598 | 505 | 930 | 4.45e-74 | 254 |
| Msa1417630 | MtrunA17_Chr4g0068081 | 31.088 | 193 | 99 | 4 | 354 | 546 | 1 | 159 | 6.28e-22 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1417630 | AT4G38650.1 | 63.899 | 554 | 180 | 5 | 52 | 598 | 22 | 562 | 0.0 | 745 |
| Msa1417630 | AT4G38300.1 | 71.756 | 262 | 63 | 2 | 227 | 487 | 12 | 263 | 1.50e-137 | 402 |
| Msa1417630 | AT4G33840.1 | 36.572 | 566 | 309 | 9 | 64 | 598 | 25 | 571 | 4.37e-128 | 388 |
| Msa1417630 | AT4G33860.1 | 38.068 | 528 | 303 | 9 | 64 | 574 | 25 | 545 | 3.31e-126 | 384 |
| Msa1417630 | AT4G33830.1 | 38.324 | 561 | 295 | 10 | 64 | 593 | 26 | 566 | 4.71e-126 | 383 |
| Msa1417630 | AT2G14690.1 | 34.601 | 552 | 318 | 13 | 64 | 594 | 32 | 561 | 7.75e-98 | 310 |
| Msa1417630 | AT4G33810.1 | 35.685 | 482 | 280 | 11 | 115 | 585 | 49 | 511 | 3.45e-96 | 304 |
| Msa1417630 | AT4G33810.5 | 35.685 | 482 | 280 | 11 | 115 | 585 | 49 | 511 | 3.45e-96 | 304 |
| Msa1417630 | AT4G33810.2 | 35.685 | 482 | 280 | 11 | 115 | 585 | 89 | 551 | 1.41e-95 | 304 |
| Msa1417630 | AT4G33810.3 | 35.685 | 482 | 280 | 11 | 115 | 585 | 89 | 551 | 1.41e-95 | 304 |
| Msa1417630 | AT4G33810.4 | 35.685 | 482 | 280 | 11 | 115 | 585 | 89 | 551 | 1.41e-95 | 304 |
| Msa1417630 | AT4G33820.1 | 36.235 | 425 | 259 | 7 | 132 | 550 | 93 | 511 | 2.95e-89 | 287 |
| Msa1417630 | AT1G58370.1 | 36.842 | 380 | 223 | 7 | 227 | 598 | 544 | 914 | 5.11e-76 | 260 |
| Msa1417630 | AT1G58370.2 | 36.842 | 380 | 223 | 7 | 227 | 598 | 572 | 942 | 6.25e-76 | 260 |
| Msa1417630 | AT1G10050.3 | 34.312 | 443 | 279 | 8 | 160 | 598 | 661 | 1095 | 1.12e-72 | 253 |
| Msa1417630 | AT1G10050.2 | 34.312 | 443 | 279 | 8 | 160 | 598 | 629 | 1063 | 1.28e-72 | 252 |
| Msa1417630 | AT1G10050.1 | 34.312 | 443 | 279 | 8 | 160 | 598 | 629 | 1063 | 1.28e-72 | 252 |
| Msa1417630 | AT4G08160.1 | 31.107 | 524 | 328 | 11 | 76 | 589 | 240 | 740 | 3.91e-66 | 230 |
| Msa1417630 | AT4G08160.2 | 33.180 | 434 | 271 | 8 | 76 | 506 | 240 | 657 | 1.13e-59 | 211 |
Find 147 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTAGGAGAATATAGAATT+AGG | 0.197889 | tig0024501:-50957 | Msa1417630:CDS |
| TTATTTGTAGGCAATTTATT+TGG | 0.199684 | tig0024501:-51196 | Msa1417630:intron |
| ACCCATGCAGGATTGTATTT+AGG | 0.215174 | tig0024501:+51778 | None:intergenic |
| GTACTACGTTTGAAAGTTAA+TGG | 0.228244 | tig0024501:+53204 | None:intergenic |
| GGGGTTTCTTCTTCTTTCTA+TGG | 0.261359 | tig0024501:-53006 | Msa1417630:intron |
| CCCATGCAGGATTGTATTTA+GGG | 0.265487 | tig0024501:+51779 | None:intergenic |
| TCTTTGAAAACGAGCTTAAA+TGG | 0.282741 | tig0024501:-51915 | Msa1417630:CDS |
| GCATGGGTTCTTAACCTTAC+AGG | 0.285919 | tig0024501:-51763 | Msa1417630:CDS |
| CTCCATTGGTGGTGAGTAAA+TGG | 0.299076 | tig0024501:+52218 | None:intergenic |
| CTCTAACAAATTGCATCATT+TGG | 0.305368 | tig0024501:+51845 | None:intergenic |
| CCTTGTAATTTCCTTCCATT+AGG | 0.307008 | tig0024501:+52057 | None:intergenic |
| TTCACAAACCAATTCTGATA+TGG | 0.315882 | tig0024501:+51955 | None:intergenic |
| AAGAGCTATCCTAGACAAAT+TGG | 0.323111 | tig0024501:-51398 | Msa1417630:CDS |
| TGTAAGCAGTAGAGTCATAT+AGG | 0.332357 | tig0024501:+52899 | None:intergenic |
| GCGATAGCAAAGACCATTCT+TGG | 0.334413 | tig0024501:-51985 | Msa1417630:CDS |
| CTTGTAATTTCCTTCCATTA+GGG | 0.341062 | tig0024501:+52058 | None:intergenic |
| CATTGTCTGTGAGGCACATT+TGG | 0.350045 | tig0024501:+51091 | None:intergenic |
| ATATCAAAAGACTTTCCTAT+TGG | 0.362210 | tig0024501:-52012 | Msa1417630:CDS |
| TTACATGAGCAGTTAAATAA+AGG | 0.364013 | tig0024501:-50751 | Msa1417630:three_prime_UTR |
| GCAACATACCATATCAGAAT+TGG | 0.364428 | tig0024501:-51963 | Msa1417630:CDS |
| GTAAGCAGTAGAGTCATATA+GGG | 0.368725 | tig0024501:+52900 | None:intergenic |
| GCTCTTATAAGTGGAAGATT+TGG | 0.368945 | tig0024501:+51415 | None:intergenic |
| CCACCGTAAAGTGGCTTCTC+TGG | 0.371358 | tig0024501:+52752 | None:intergenic |
| ATGAGACATATAACTGTATT+GGG | 0.377080 | tig0024501:-52385 | Msa1417630:CDS |
| TACAGATTCAGTTATGATAA+AGG | 0.377300 | tig0024501:-52426 | Msa1417630:CDS |
| TACTACGTTTGAAAGTTAAT+GGG | 0.377977 | tig0024501:+53205 | None:intergenic |
| TGGACAGCACTTCATCCATA+TGG | 0.380084 | tig0024501:-51120 | Msa1417630:CDS |
| AGTCACAGTCACGTGAGATT+TGG | 0.382876 | tig0024501:-53358 | Msa1417630:five_prime_UTR |
| CGTTTGAAAGTTAATGGGAT+TGG | 0.383246 | tig0024501:+53210 | None:intergenic |
| AATGAGACATATAACTGTAT+TGG | 0.393839 | tig0024501:-52386 | Msa1417630:CDS |
| CATCCAGAGAAGCCACTTTA+CGG | 0.403538 | tig0024501:-52755 | Msa1417630:CDS |
| CTTAGGAGAATATAGAATTA+GGG | 0.404134 | tig0024501:-50956 | Msa1417630:CDS |
| ACAGGGGACCAGTGAGGAAT+AGG | 0.404498 | tig0024501:+53279 | None:intergenic |
| AGGTTCTAGTGAAGAAGTTA+AGG | 0.410579 | tig0024501:+50824 | None:intergenic |
| ATCAGAATTGGTTTGTGAAA+CGG | 0.414114 | tig0024501:-51951 | Msa1417630:CDS |
| CTGACGTGGCTGCTACAGTA+TGG | 0.414715 | tig0024501:-52463 | Msa1417630:CDS |
| GGGATTGGATTGGATTGGAT+TGG | 0.417502 | tig0024501:+53225 | None:intergenic |
| TGGCAAACTGGTCGTGTAGA+AGG | 0.419661 | tig0024501:-51018 | Msa1417630:CDS |
| CTTCTTCAAGAGTGGCAAAC+TGG | 0.421800 | tig0024501:-51030 | Msa1417630:CDS |
| CAGTGAATGGGATAATGCTT+TGG | 0.423472 | tig0024501:-51140 | Msa1417630:CDS |
| ATTGGATTGGATTGGATTGG+AGG | 0.428393 | tig0024501:+53233 | None:intergenic |
| TGAACTAAGTGATGTTAATC+TGG | 0.429828 | tig0024501:-53401 | None:intergenic |
| TTCTCACACCCTTCAGTGAA+TGG | 0.434692 | tig0024501:-51153 | Msa1417630:CDS |
| ATATCACAAGGGAACAGAAC+AGG | 0.434939 | tig0024501:+53261 | None:intergenic |
| GTTACAATTCTCCTTGAGAA+AGG | 0.439341 | tig0024501:+50804 | None:intergenic |
| CACATTTGGTAGCACCCATA+TGG | 0.442952 | tig0024501:+51105 | None:intergenic |
| CAACACTAGATCTTCCCGTT+TGG | 0.443376 | tig0024501:-51375 | Msa1417630:CDS |
| ATAAGAGAACTAAGACAATA+TGG | 0.448976 | tig0024501:-51481 | Msa1417630:CDS |
| GAAAGTTAATGGGATTGGAT+TGG | 0.453214 | tig0024501:+53215 | None:intergenic |
| TGCTACATTTCATTTCTTTG+AGG | 0.453293 | tig0024501:-51608 | Msa1417630:CDS |
| AAGAAATGAAATGTAGCATT+GGG | 0.454110 | tig0024501:+51613 | None:intergenic |
| TTCTTCACATGCTACAATAT+AGG | 0.454734 | tig0024501:+53314 | None:intergenic |
| TGGATTGGATTGGATTGGAT+TGG | 0.460328 | tig0024501:+53230 | None:intergenic |
| CAGTGTTGATGATATATTGT+TGG | 0.461856 | tig0024501:+52189 | None:intergenic |
| ATCAATCTCAGTAAGCCAAA+CGG | 0.466197 | tig0024501:+51360 | None:intergenic |
| ATCTTAACTGTGTACCTGTA+AGG | 0.467889 | tig0024501:+51749 | None:intergenic |
| TCAATCTCAGTAAGCCAAAC+GGG | 0.472110 | tig0024501:+51361 | None:intergenic |
| CTGTCTCTATCAACTCTGAT+TGG | 0.479768 | tig0024501:-50776 | Msa1417630:three_prime_UTR |
| AAAGAAATGAAATGTAGCAT+TGG | 0.480004 | tig0024501:+51612 | None:intergenic |
| CAAAACAGAATTCATACATT+GGG | 0.480784 | tig0024501:-51686 | Msa1417630:CDS |
| GATTTCTACGAACAAAGGCT+TGG | 0.482875 | tig0024501:-51637 | Msa1417630:CDS |
| CCACTTTACGGTGGAGGAGG+AGG | 0.484097 | tig0024501:-52743 | Msa1417630:CDS |
| GTTCATGTATCAGACCCTAA+TGG | 0.488462 | tig0024501:-52072 | Msa1417630:CDS |
| TTTGCTATCGCAGAGCCAAT+AGG | 0.489645 | tig0024501:+51997 | None:intergenic |
| TTTATTTGGAACAAGTATTG+AGG | 0.493659 | tig0024501:-51182 | Msa1417630:CDS |
| AAATGACCAACATCCACGTT+TGG | 0.493661 | tig0024501:+52352 | None:intergenic |
| GAAGTAGGTTGCATCATCCT+TGG | 0.493827 | tig0024501:+53081 | None:intergenic |
| AAATTAAGTCACAGTGTCAC+AGG | 0.494605 | tig0024501:+50865 | None:intergenic |
| GGACAGCACTTCATCCATAT+GGG | 0.495243 | tig0024501:-51119 | Msa1417630:CDS |
| TCTAGGATAGCTCTTATAAG+TGG | 0.496749 | tig0024501:+51406 | None:intergenic |
| GATTTCAACAACTTACCATC+AGG | 0.497916 | tig0024501:-51069 | Msa1417630:CDS |
| AAGCCACTTTACGGTGGAGG+AGG | 0.499159 | tig0024501:-52746 | Msa1417630:CDS |
| TTCATAAACAAAGTTGCTAA+AGG | 0.499339 | tig0024501:+51568 | None:intergenic |
| TCTTCTAGTTATAATACCGA+TGG | 0.501758 | tig0024501:-53028 | Msa1417630:CDS |
| TTAATGGGATTGGATTGGAT+TGG | 0.502425 | tig0024501:+53220 | None:intergenic |
| GTTGGTTGATTCTCCATTGG+TGG | 0.504409 | tig0024501:+52207 | None:intergenic |
| CCTCCTCCTCCACCGTAAAG+TGG | 0.507893 | tig0024501:+52743 | None:intergenic |
| ATTGTTGGTTGATTCTCCAT+TGG | 0.513327 | tig0024501:+52204 | None:intergenic |
| TGTTGGTCATTTCTCAAAGG+TGG | 0.513377 | tig0024501:-52341 | Msa1417630:CDS |
| TCTCACACCCTTCAGTGAAT+GGG | 0.515758 | tig0024501:-51152 | Msa1417630:CDS |
| TTATTTGGAACAAGTATTGA+GGG | 0.519096 | tig0024501:-51181 | Msa1417630:CDS |
| GGATTGGATTGGATTGGAGG+AGG | 0.522041 | tig0024501:+53236 | None:intergenic |
| ATCTGAGTTGTGAAAGAAGA+TGG | 0.523796 | tig0024501:+52286 | None:intergenic |
| ATATGCTACTTAACTTAACA+CGG | 0.525346 | tig0024501:-53164 | Msa1417630:CDS |
| CTAGTGTTGCCAATTTGTCT+AGG | 0.527390 | tig0024501:+51389 | None:intergenic |
| ATATGGTATGTTGCCAAGAA+TGG | 0.540598 | tig0024501:+51972 | None:intergenic |
| CTTCTAGTTATAATACCGAT+GGG | 0.541621 | tig0024501:-53027 | Msa1417630:CDS |
| ACTTTGATTTCTACGAACAA+AGG | 0.545752 | tig0024501:-51642 | Msa1417630:CDS |
| ACAAAACAGAATTCATACAT+TGG | 0.546953 | tig0024501:-51687 | Msa1417630:CDS |
| TCGGTATTATAACTAGAAGA+AGG | 0.551967 | tig0024501:+53031 | None:intergenic |
| AAGATGGTAGATGAATTTGA+AGG | 0.553423 | tig0024501:+52302 | None:intergenic |
| GAGAAGCCACTTTACGGTGG+AGG | 0.555307 | tig0024501:-52749 | Msa1417630:CDS |
| CAACAACACCAACATGAACA+TGG | 0.556480 | tig0024501:-52699 | Msa1417630:CDS |
| TTGGAACAAGTATTGAGGGA+AGG | 0.561612 | tig0024501:-51177 | Msa1417630:CDS |
| AGCATTATCCCATTCACTGA+AGG | 0.566045 | tig0024501:+51144 | None:intergenic |
| ATCTTCTTTCACAACTCAGA+TGG | 0.566431 | tig0024501:-52284 | Msa1417630:CDS |
| AGATTATAGAAGACAAGTGA+AGG | 0.569889 | tig0024501:+52671 | None:intergenic |
| ACCCTAAATACAATCCTGCA+TGG | 0.572180 | tig0024501:-51780 | Msa1417630:CDS |
| ATGGATGGAATTGGTCTCGA+GGG | 0.573124 | tig0024501:-51451 | Msa1417630:CDS |
| ACGGGCATCCTATTCCTCAC+TGG | 0.573439 | tig0024501:-53287 | Msa1417630:five_prime_UTR |
| CTCAGATGGTAAAGATCATG+TGG | 0.575507 | tig0024501:-52270 | Msa1417630:CDS |
| CACACTTGATCATGATACTC+AGG | 0.577347 | tig0024501:-51329 | Msa1417630:intron |
| TATCACAAGGGAACAGAACA+GGG | 0.582185 | tig0024501:+53262 | None:intergenic |
| CTTCACTAGAACCTTTCTCA+AGG | 0.584604 | tig0024501:-50815 | Msa1417630:three_prime_UTR |
| CCTAATGGAAGGAAATTACA+AGG | 0.585093 | tig0024501:-52057 | Msa1417630:CDS |
| TCTAGTTATAATACCGATGG+GGG | 0.585265 | tig0024501:-53025 | Msa1417630:CDS |
| TCAACTTTCTCTCTATGTAG+AGG | 0.586344 | tig0024501:-50907 | Msa1417630:CDS |
| GCATTATCCCATTCACTGAA+GGG | 0.590706 | tig0024501:+51145 | None:intergenic |
| TTCTAGTTATAATACCGATG+GGG | 0.591385 | tig0024501:-53026 | Msa1417630:CDS |
| CATCGTTATATATGCTGACG+TGG | 0.593862 | tig0024501:-52477 | Msa1417630:CDS |
| CAACTTACCATCAGGTGATG+TGG | 0.598575 | tig0024501:-51061 | Msa1417630:CDS |
| CCCTAAATACAATCCTGCAT+GGG | 0.602674 | tig0024501:-51779 | Msa1417630:CDS |
| GGATGTTGGTCATTTCTCAA+AGG | 0.605842 | tig0024501:-52344 | Msa1417630:CDS |
| GTCTGATACATGAACAGTGA+CGG | 0.610322 | tig0024501:+52080 | None:intergenic |
| TAGCATGTGAAGAAGAGCAC+GGG | 0.610956 | tig0024501:-53305 | Msa1417630:five_prime_UTR |
| TATGCTACTTAACTTAACAC+GGG | 0.613733 | tig0024501:-53163 | Msa1417630:CDS |
| TGACGTGGCTGCTACAGTAT+GGG | 0.614615 | tig0024501:-52462 | Msa1417630:CDS |
| GAAGGTATCACAGATGAGCA+TGG | 0.615372 | tig0024501:-51000 | Msa1417630:CDS |
| TATGGATGGAATTGGTCTCG+AGG | 0.616485 | tig0024501:-51452 | Msa1417630:CDS |
| GCCAACAAAATCATAGCTAG+AGG | 0.617131 | tig0024501:-51823 | Msa1417630:CDS |
| TCTGCCTTCATGAGGCTCTG+TGG | 0.618660 | tig0024501:+51888 | None:intergenic |
| TTGGAGGAGGTGATATCACA+AGG | 0.621040 | tig0024501:+53249 | None:intergenic |
| ATGTATCAGACCCTAATGGA+AGG | 0.621861 | tig0024501:-52068 | Msa1417630:CDS |
| TAGTTGACTCTGCCTTCATG+AGG | 0.625434 | tig0024501:+51880 | None:intergenic |
| TGGATAAACTTCTTCAAGAG+TGG | 0.627938 | tig0024501:-51038 | Msa1417630:CDS |
| AATTAAGTCACAGTGTCACA+GGG | 0.628706 | tig0024501:+50866 | None:intergenic |
| TGAATGGTATGGAATGAAGT+AGG | 0.634785 | tig0024501:+53066 | None:intergenic |
| TATGCCACAGAGCCTCATGA+AGG | 0.641188 | tig0024501:-51892 | Msa1417630:CDS |
| TTATCCACCACATCACCTGA+TGG | 0.643051 | tig0024501:+51054 | None:intergenic |
| CTTACCATCAGGTGATGTGG+TGG | 0.645932 | tig0024501:-51058 | Msa1417630:CDS |
| TAAACAGCAGTACTAGTCCA+AGG | 0.645943 | tig0024501:-53098 | Msa1417630:CDS |
| AGCCATTTACTCACCACCAA+TGG | 0.646406 | tig0024501:-52220 | Msa1417630:CDS |
| ATTCAGTTATGATAAAGGCA+AGG | 0.650648 | tig0024501:-52421 | Msa1417630:CDS |
| GTAGCATGTGAAGAAGAGCA+CGG | 0.653426 | tig0024501:-53306 | Msa1417630:five_prime_UTR |
| GTAAGGTTAAGAACCCATGC+AGG | 0.663112 | tig0024501:+51766 | None:intergenic |
| TAAGCAGTAGAGTCATATAG+GGG | 0.663519 | tig0024501:+52901 | None:intergenic |
| TGACTCTACTGCTTACACTC+AGG | 0.668323 | tig0024501:-52893 | Msa1417630:intron |
| GGCTGCTACAGTATGGGTGA+AGG | 0.668347 | tig0024501:-52456 | Msa1417630:CDS |
| GCGTTGACGCTTATATCTCA+CGG | 0.669191 | tig0024501:-51504 | Msa1417630:CDS |
| CACGTCAGCATATATAACGA+TGG | 0.679224 | tig0024501:+52478 | None:intergenic |
| CCAGAGAAGCCACTTTACGG+TGG | 0.680549 | tig0024501:-52752 | Msa1417630:CDS |
| AGGTGAAGCCATGTTCATGT+TGG | 0.701518 | tig0024501:+52691 | None:intergenic |
| AGAGTTGATAGAGACAGTTG+TGG | 0.708134 | tig0024501:+50782 | None:intergenic |
| AACAGAACAGGGGACCAGTG+AGG | 0.713722 | tig0024501:+53273 | None:intergenic |
| ATCACAAGGGAACAGAACAG+GGG | 0.724966 | tig0024501:+53263 | None:intergenic |
| TGTTGAAATCATTGTCTGTG+AGG | 0.726848 | tig0024501:+51082 | None:intergenic |
| TGGAGGAGGTGATATCACAA+GGG | 0.734851 | tig0024501:+53250 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATGAATTGAATCAATAAA+AGG | + | tig0024501:51059-51078 | None:intergenic | 15.0% |
| !! | AGAAAAATATATGAATGGTA+TGG | + | tig0024501:50975-50994 | None:intergenic | 20.0% |
| !! | AAGGAAGAAAAATATATGAA+TGG | + | tig0024501:50980-50999 | None:intergenic | 20.0% |
| !!! | GATAGATAATATGTTGTTTT+TGG | + | tig0024501:51871-51890 | None:intergenic | 20.0% |
| !! | TTATTTGTAGGCAATTTATT+TGG | - | tig0024501:52831-52850 | Msa1417630:intron | 20.0% |
| ! | TACTACGTTTGAAAGTTAAT+GGG | + | tig0024501:50825-50844 | None:intergenic | 25.0% |
| !! | ATATGCTACTTAACTTAACA+CGG | - | tig0024501:50863-50882 | Msa1417630:exon | 25.0% |
| ! | TACAGATTCAGTTATGATAA+AGG | - | tig0024501:51601-51620 | Msa1417630:CDS | 25.0% |
| ! | AATGAGACATATAACTGTAT+TGG | - | tig0024501:51641-51660 | Msa1417630:CDS | 25.0% |
| ! | ATGAGACATATAACTGTATT+GGG | - | tig0024501:51642-51661 | Msa1417630:CDS | 25.0% |
| ! | ATATCAAAAGACTTTCCTAT+TGG | - | tig0024501:52015-52034 | Msa1417630:CDS | 25.0% |
| !! | GTATGAATTCTGTTTTGTAT+TGG | + | tig0024501:52338-52357 | None:intergenic | 25.0% |
| ! | ACAAAACAGAATTCATACAT+TGG | - | tig0024501:52340-52359 | Msa1417630:CDS | 25.0% |
| ! | CAAAACAGAATTCATACATT+GGG | - | tig0024501:52341-52360 | Msa1417630:CDS | 25.0% |
| ! | AAGAAATGAAATGTAGCATT+GGG | + | tig0024501:52417-52436 | None:intergenic | 25.0% |
| ! | AAAGAAATGAAATGTAGCAT+TGG | + | tig0024501:52418-52437 | None:intergenic | 25.0% |
| ! | TTCATAAACAAAGTTGCTAA+AGG | + | tig0024501:52462-52481 | None:intergenic | 25.0% |
| ! | ATAAGAGAACTAAGACAATA+TGG | - | tig0024501:52546-52565 | Msa1417630:intron | 25.0% |
| !!! | AAGACAATATGGTGTTTTTA+TGG | - | tig0024501:52557-52576 | Msa1417630:intron | 25.0% |
| !! | TTTATTTGGAACAAGTATTG+AGG | - | tig0024501:52845-52864 | Msa1417630:intron | 25.0% |
| !!! | TTATTTGGAACAAGTATTGA+GGG | - | tig0024501:52846-52865 | Msa1417630:intron | 25.0% |
| ! | TCTTAGGAGAATATAGAATT+AGG | - | tig0024501:53070-53089 | Msa1417630:CDS | 25.0% |
| ! | CTTAGGAGAATATAGAATTA+GGG | - | tig0024501:53071-53090 | Msa1417630:CDS | 25.0% |
| ! | TTACATGAGCAGTTAAATAA+AGG | - | tig0024501:53276-53295 | Msa1417630:five_prime_UTR | 25.0% |
| TTCTTCACATGCTACAATAT+AGG | + | tig0024501:50716-50735 | None:intergenic | 30.0% | |
| GTACTACGTTTGAAAGTTAA+TGG | + | tig0024501:50826-50845 | None:intergenic | 30.0% | |
| ! | TATGCTACTTAACTTAACAC+GGG | - | tig0024501:50864-50883 | Msa1417630:exon | 30.0% |
| TCGGTATTATAACTAGAAGA+AGG | + | tig0024501:50999-51018 | None:intergenic | 30.0% | |
| ! | TCTTCTAGTTATAATACCGA+TGG | - | tig0024501:50999-51018 | Msa1417630:CDS | 30.0% |
| ! | CTTCTAGTTATAATACCGAT+GGG | - | tig0024501:51000-51019 | Msa1417630:CDS | 30.0% |
| ! | TTCTAGTTATAATACCGATG+GGG | - | tig0024501:51001-51020 | Msa1417630:CDS | 30.0% |
| AGATTATAGAAGACAAGTGA+AGG | + | tig0024501:51359-51378 | None:intergenic | 30.0% | |
| ! | GACACTATCTATTCTTTTTC+TGG | - | tig0024501:51386-51405 | Msa1417630:CDS | 30.0% |
| ATTAAAAATGATTCCGTTGC+CGG | - | tig0024501:51472-51491 | Msa1417630:CDS | 30.0% | |
| GGATTATTGTTGATGTCATT+GGG | - | tig0024501:51519-51538 | Msa1417630:CDS | 30.0% | |
| ATTCAGTTATGATAAAGGCA+AGG | - | tig0024501:51606-51625 | Msa1417630:CDS | 30.0% | |
| AAGATGGTAGATGAATTTGA+AGG | + | tig0024501:51728-51747 | None:intergenic | 30.0% | |
| !! | CAGTGTTGATGATATATTGT+TGG | + | tig0024501:51841-51860 | None:intergenic | 30.0% |
| CTTGTAATTTCCTTCCATTA+GGG | + | tig0024501:51972-51991 | None:intergenic | 30.0% | |
| TTCACAAACCAATTCTGATA+TGG | + | tig0024501:52075-52094 | None:intergenic | 30.0% | |
| !! | ATCAGAATTGGTTTGTGAAA+CGG | - | tig0024501:52076-52095 | Msa1417630:CDS | 30.0% |
| ! | TCTTTGAAAACGAGCTTAAA+TGG | - | tig0024501:52112-52131 | Msa1417630:intron | 30.0% |
| CTCTAACAAATTGCATCATT+TGG | + | tig0024501:52185-52204 | None:intergenic | 30.0% | |
| ! | TAGAGGACACAATATTTTCT+GGG | - | tig0024501:52221-52240 | Msa1417630:CDS | 30.0% |
| ! | ACTTTGATTTCTACGAACAA+AGG | - | tig0024501:52385-52404 | Msa1417630:CDS | 30.0% |
| TGCTACATTTCATTTCTTTG+AGG | - | tig0024501:52419-52438 | Msa1417630:CDS | 30.0% | |
| !! | CAATATGGTGTTTTTATGGA+TGG | - | tig0024501:52561-52580 | Msa1417630:intron | 30.0% |
| ! | TGCCTTCATTCTTTATTTGT+AGG | - | tig0024501:52819-52838 | Msa1417630:intron | 30.0% |
| TGCCTACAAATAAAGAATGA+AGG | + | tig0024501:52824-52843 | None:intergenic | 30.0% | |
| ! | ATGGATCACATAGCTTTTAT+GGG | - | tig0024501:53046-53065 | Msa1417630:CDS | 30.0% |
| ! | TTAATGGGATTGGATTGGAT+TGG | + | tig0024501:50810-50829 | None:intergenic | 35.0% |
| GAAAGTTAATGGGATTGGAT+TGG | + | tig0024501:50815-50834 | None:intergenic | 35.0% | |
| CGTTTGAAAGTTAATGGGAT+TGG | + | tig0024501:50820-50839 | None:intergenic | 35.0% | |
| TGAATGGTATGGAATGAAGT+AGG | + | tig0024501:50964-50983 | None:intergenic | 35.0% | |
| TCTAGTTATAATACCGATGG+GGG | - | tig0024501:51002-51021 | Msa1417630:CDS | 35.0% | |
| !! | CGATATTGTTTTGTTGCAGA+TGG | - | tig0024501:51102-51121 | Msa1417630:CDS | 35.0% |
| TAAGCAGTAGAGTCATATAG+GGG | + | tig0024501:51129-51148 | None:intergenic | 35.0% | |
| GTAAGCAGTAGAGTCATATA+GGG | + | tig0024501:51130-51149 | None:intergenic | 35.0% | |
| TGTAAGCAGTAGAGTCATAT+AGG | + | tig0024501:51131-51150 | None:intergenic | 35.0% | |
| TTAAAAATGATTCCGTTGCC+GGG | - | tig0024501:51473-51492 | Msa1417630:CDS | 35.0% | |
| TTGAACCAACTAGACTACAA+CGG | - | tig0024501:51498-51517 | Msa1417630:CDS | 35.0% | |
| ATAATCCGTTGTAGTCTAGT+TGG | + | tig0024501:51506-51525 | None:intergenic | 35.0% | |
| CGGATTATTGTTGATGTCAT+TGG | - | tig0024501:51518-51537 | Msa1417630:CDS | 35.0% | |
| ATCTGAGTTGTGAAAGAAGA+TGG | + | tig0024501:51744-51763 | None:intergenic | 35.0% | |
| ATCTTCTTTCACAACTCAGA+TGG | - | tig0024501:51743-51762 | Msa1417630:CDS | 35.0% | |
| ! | ATTGTTGGTTGATTCTCCAT+TGG | + | tig0024501:51826-51845 | None:intergenic | 35.0% |
| CCTTGTAATTTCCTTCCATT+AGG | + | tig0024501:51973-51992 | None:intergenic | 35.0% | |
| CCTAATGGAAGGAAATTACA+AGG | - | tig0024501:51970-51989 | Msa1417630:CDS | 35.0% | |
| ATATGGTATGTTGCCAAGAA+TGG | + | tig0024501:52058-52077 | None:intergenic | 35.0% | |
| GCAACATACCATATCAGAAT+TGG | - | tig0024501:52064-52083 | Msa1417630:CDS | 35.0% | |
| ! | TCCTCTAGCTATGATTTTGT+TGG | + | tig0024501:52208-52227 | None:intergenic | 35.0% |
| ! | CTAGAGGACACAATATTTTC+TGG | - | tig0024501:52220-52239 | Msa1417630:CDS | 35.0% |
| ATCTTAACTGTGTACCTGTA+AGG | + | tig0024501:52281-52300 | None:intergenic | 35.0% | |
| !! | GGTGTTTTTATGGATGGAAT+TGG | - | tig0024501:52567-52586 | Msa1417630:intron | 35.0% |
| GCTCTTATAAGTGGAAGATT+TGG | + | tig0024501:52615-52634 | None:intergenic | 35.0% | |
| ! | TCTAGGATAGCTCTTATAAG+TGG | + | tig0024501:52624-52643 | None:intergenic | 35.0% |
| AAGAGCTATCCTAGACAAAT+TGG | - | tig0024501:52629-52648 | Msa1417630:intron | 35.0% | |
| ATCAATCTCAGTAAGCCAAA+CGG | + | tig0024501:52670-52689 | None:intergenic | 35.0% | |
| TGTTGAAATCATTGTCTGTG+AGG | + | tig0024501:52948-52967 | None:intergenic | 35.0% | |
| GATTTCAACAACTTACCATC+AGG | - | tig0024501:52958-52977 | Msa1417630:intron | 35.0% | |
| TGGATAAACTTCTTCAAGAG+TGG | - | tig0024501:52989-53008 | Msa1417630:intron | 35.0% | |
| ! | CATGGATCACATAGCTTTTA+TGG | - | tig0024501:53045-53064 | Msa1417630:CDS | 35.0% |
| ! | CATAGCTTTTATGGGTTCTT+AGG | - | tig0024501:53054-53073 | Msa1417630:CDS | 35.0% |
| TCAACTTTCTCTCTATGTAG+AGG | - | tig0024501:53120-53139 | Msa1417630:CDS | 35.0% | |
| AATTAAGTCACAGTGTCACA+GGG | + | tig0024501:53164-53183 | None:intergenic | 35.0% | |
| AAATTAAGTCACAGTGTCAC+AGG | + | tig0024501:53165-53184 | None:intergenic | 35.0% | |
| ! | AGGTTCTAGTGAAGAAGTTA+AGG | + | tig0024501:53206-53225 | None:intergenic | 35.0% |
| GTTACAATTCTCCTTGAGAA+AGG | + | tig0024501:53226-53245 | None:intergenic | 35.0% | |
| TATCACAAGGGAACAGAACA+GGG | + | tig0024501:50768-50787 | None:intergenic | 40.0% | |
| ATATCACAAGGGAACAGAAC+AGG | + | tig0024501:50769-50788 | None:intergenic | 40.0% | |
| ! | ATTGGATTGGATTGGATTGG+AGG | + | tig0024501:50797-50816 | None:intergenic | 40.0% |
| ! | TGGATTGGATTGGATTGGAT+TGG | + | tig0024501:50800-50819 | None:intergenic | 40.0% |
| TAAACAGCAGTACTAGTCCA+AGG | - | tig0024501:50929-50948 | Msa1417630:CDS | 40.0% | |
| AAAGAAGAAGAAACCCCCAT+CGG | + | tig0024501:51018-51037 | None:intergenic | 40.0% | |
| GGGGTTTCTTCTTCTTTCTA+TGG | - | tig0024501:51021-51040 | Msa1417630:CDS | 40.0% | |
| CAACAACACCAACATGAACA+TGG | - | tig0024501:51328-51347 | Msa1417630:intron | 40.0% | |
| CACGTCAGCATATATAACGA+TGG | + | tig0024501:51552-51571 | None:intergenic | 40.0% | |
| CATCGTTATATATGCTGACG+TGG | - | tig0024501:51550-51569 | Msa1417630:CDS | 40.0% | |
| ! | TTTTAGCCAAACGTGGATGT+TGG | - | tig0024501:51669-51688 | Msa1417630:CDS | 40.0% |
| AAATGACCAACATCCACGTT+TGG | + | tig0024501:51678-51697 | None:intergenic | 40.0% | |
| GGATGTTGGTCATTTCTCAA+AGG | - | tig0024501:51683-51702 | Msa1417630:CDS | 40.0% | |
| TGTTGGTCATTTCTCAAAGG+TGG | - | tig0024501:51686-51705 | Msa1417630:CDS | 40.0% | |
| CTCAGATGGTAAAGATCATG+TGG | - | tig0024501:51757-51776 | Msa1417630:CDS | 40.0% | |
| GTCTGATACATGAACAGTGA+CGG | + | tig0024501:51950-51969 | None:intergenic | 40.0% | |
| GTTCATGTATCAGACCCTAA+TGG | - | tig0024501:51955-51974 | Msa1417630:CDS | 40.0% | |
| ATGTATCAGACCCTAATGGA+AGG | - | tig0024501:51959-51978 | Msa1417630:CDS | 40.0% | |
| GCCAACAAAATCATAGCTAG+AGG | - | tig0024501:52204-52223 | Msa1417630:CDS | 40.0% | |
| ACCCTAAATACAATCCTGCA+TGG | - | tig0024501:52247-52266 | Msa1417630:CDS | 40.0% | |
| CCCATGCAGGATTGTATTTA+GGG | + | tig0024501:52251-52270 | None:intergenic | 40.0% | |
| CCCTAAATACAATCCTGCAT+GGG | - | tig0024501:52248-52267 | Msa1417630:CDS | 40.0% | |
| ACCCATGCAGGATTGTATTT+AGG | + | tig0024501:52252-52271 | None:intergenic | 40.0% | |
| GATTTCTACGAACAAAGGCT+TGG | - | tig0024501:52390-52409 | Msa1417630:CDS | 40.0% | |
| CTAGTGTTGCCAATTTGTCT+AGG | + | tig0024501:52641-52660 | None:intergenic | 40.0% | |
| TCAATCTCAGTAAGCCAAAC+GGG | + | tig0024501:52669-52688 | None:intergenic | 40.0% | |
| CACACTTGATCATGATACTC+AGG | - | tig0024501:52698-52717 | Msa1417630:CDS | 40.0% | |
| TTGATCATGATACTCAGGTG+AGG | - | tig0024501:52703-52722 | Msa1417630:CDS | 40.0% | |
| !! | TTGGAACAAGTATTGAGGGA+AGG | - | tig0024501:52850-52869 | Msa1417630:intron | 40.0% |
| GCATTATCCCATTCACTGAA+GGG | + | tig0024501:52885-52904 | None:intergenic | 40.0% | |
| AGCATTATCCCATTCACTGA+AGG | + | tig0024501:52886-52905 | None:intergenic | 40.0% | |
| CAGTGAATGGGATAATGCTT+TGG | - | tig0024501:52887-52906 | Msa1417630:intron | 40.0% | |
| CTTCACTAGAACCTTTCTCA+AGG | - | tig0024501:53212-53231 | Msa1417630:five_prime_UTR | 40.0% | |
| !! | AGAGTTGATAGAGACAGTTG+TGG | + | tig0024501:53248-53267 | None:intergenic | 40.0% |
| CTGTCTCTATCAACTCTGAT+TGG | - | tig0024501:53251-53270 | Msa1417630:five_prime_UTR | 40.0% | |
| AGTCACAGTCACGTGAGATT+TGG | - | tig0024501:50669-50688 | Msa1417630:three_prime_UTR | 45.0% | |
| GTAGCATGTGAAGAAGAGCA+CGG | - | tig0024501:50721-50740 | Msa1417630:three_prime_UTR | 45.0% | |
| ! | TAGCATGTGAAGAAGAGCAC+GGG | - | tig0024501:50722-50741 | Msa1417630:three_prime_UTR | 45.0% |
| ATCACAAGGGAACAGAACAG+GGG | + | tig0024501:50767-50786 | None:intergenic | 45.0% | |
| TGGAGGAGGTGATATCACAA+GGG | + | tig0024501:50780-50799 | None:intergenic | 45.0% | |
| TTGGAGGAGGTGATATCACA+AGG | + | tig0024501:50781-50800 | None:intergenic | 45.0% | |
| ! | GGGATTGGATTGGATTGGAT+TGG | + | tig0024501:50805-50824 | None:intergenic | 45.0% |
| GAAGTAGGTTGCATCATCCT+TGG | + | tig0024501:50949-50968 | None:intergenic | 45.0% | |
| TGACTCTACTGCTTACACTC+AGG | - | tig0024501:51134-51153 | Msa1417630:CDS | 45.0% | |
| ! | CATCCAGAGAAGCCACTTTA+CGG | - | tig0024501:51272-51291 | Msa1417630:intron | 45.0% |
| AGGTGAAGCCATGTTCATGT+TGG | + | tig0024501:51339-51358 | None:intergenic | 45.0% | |
| ! | AGTCTAGTTGGTTCAAGTCC+CGG | + | tig0024501:51494-51513 | None:intergenic | 45.0% |
| AGCCATTTACTCACCACCAA+TGG | - | tig0024501:51807-51826 | Msa1417630:CDS | 45.0% | |
| !! | CTCCATTGGTGGTGAGTAAA+TGG | + | tig0024501:51812-51831 | None:intergenic | 45.0% |
| ! | GTTGGTTGATTCTCCATTGG+TGG | + | tig0024501:51823-51842 | None:intergenic | 45.0% |
| ! | TTTGCTATCGCAGAGCCAAT+AGG | + | tig0024501:52033-52052 | None:intergenic | 45.0% |
| GCGATAGCAAAGACCATTCT+TGG | - | tig0024501:52042-52061 | Msa1417630:CDS | 45.0% | |
| ! | TAGTTGACTCTGCCTTCATG+AGG | + | tig0024501:52150-52169 | None:intergenic | 45.0% |
| GTAAGGTTAAGAACCCATGC+AGG | + | tig0024501:52264-52283 | None:intergenic | 45.0% | |
| GCATGGGTTCTTAACCTTAC+AGG | - | tig0024501:52264-52283 | Msa1417630:CDS | 45.0% | |
| ! | GCGTTGACGCTTATATCTCA+CGG | - | tig0024501:52523-52542 | Msa1417630:intron | 45.0% |
| ! | TATGGATGGAATTGGTCTCG+AGG | - | tig0024501:52575-52594 | Msa1417630:intron | 45.0% |
| ! | ATGGATGGAATTGGTCTCGA+GGG | - | tig0024501:52576-52595 | Msa1417630:intron | 45.0% |
| CAACACTAGATCTTCCCGTT+TGG | - | tig0024501:52652-52671 | Msa1417630:CDS | 45.0% | |
| TTCTCACACCCTTCAGTGAA+TGG | - | tig0024501:52874-52893 | Msa1417630:intron | 45.0% | |
| TCTCACACCCTTCAGTGAAT+GGG | - | tig0024501:52875-52894 | Msa1417630:intron | 45.0% | |
| TGGACAGCACTTCATCCATA+TGG | - | tig0024501:52907-52926 | Msa1417630:CDS | 45.0% | |
| GGACAGCACTTCATCCATAT+GGG | - | tig0024501:52908-52927 | Msa1417630:CDS | 45.0% | |
| ! | CACATTTGGTAGCACCCATA+TGG | + | tig0024501:52925-52944 | None:intergenic | 45.0% |
| CATTGTCTGTGAGGCACATT+TGG | + | tig0024501:52939-52958 | None:intergenic | 45.0% | |
| CAACTTACCATCAGGTGATG+TGG | - | tig0024501:52966-52985 | Msa1417630:intron | 45.0% | |
| TTATCCACCACATCACCTGA+TGG | + | tig0024501:52976-52995 | None:intergenic | 45.0% | |
| CTTCTTCAAGAGTGGCAAAC+TGG | - | tig0024501:52997-53016 | Msa1417630:intron | 45.0% | |
| !! | GAAGGTATCACAGATGAGCA+TGG | - | tig0024501:53027-53046 | Msa1417630:CDS | 45.0% |
| ! | GGATTGGATTGGATTGGAGG+AGG | + | tig0024501:50794-50813 | None:intergenic | 50.0% |
| CTACTGCTTACACTCAGGTG+AGG | - | tig0024501:51139-51158 | Msa1417630:CDS | 50.0% | |
| TGACGTGGCTGCTACAGTAT+GGG | - | tig0024501:51565-51584 | Msa1417630:CDS | 50.0% | |
| !! | GGGACAGTTTTAGCCAAACG+TGG | - | tig0024501:51662-51681 | Msa1417630:CDS | 50.0% |
| TATGCCACAGAGCCTCATGA+AGG | - | tig0024501:52135-52154 | Msa1417630:intron | 50.0% | |
| GTAGCTAGCTAGCTAGCTAG+AGG | - | tig0024501:52725-52744 | Msa1417630:CDS | 50.0% | |
| CTTACCATCAGGTGATGTGG+TGG | - | tig0024501:52969-52988 | Msa1417630:intron | 50.0% | |
| TGGCAAACTGGTCGTGTAGA+AGG | - | tig0024501:53009-53028 | Msa1417630:CDS | 50.0% | |
| ACGGGCATCCTATTCCTCAC+TGG | - | tig0024501:50740-50759 | Msa1417630:three_prime_UTR | 55.0% | |
| ACAGGGGACCAGTGAGGAAT+AGG | + | tig0024501:50751-50770 | None:intergenic | 55.0% | |
| AACAGAACAGGGGACCAGTG+AGG | + | tig0024501:50757-50776 | None:intergenic | 55.0% | |
| CCACCGTAAAGTGGCTTCTC+TGG | + | tig0024501:51278-51297 | None:intergenic | 55.0% | |
| ! | CCAGAGAAGCCACTTTACGG+TGG | - | tig0024501:51275-51294 | Msa1417630:intron | 55.0% |
| ! | GAGAAGCCACTTTACGGTGG+AGG | - | tig0024501:51278-51297 | Msa1417630:intron | 55.0% |
| ! | AAGCCACTTTACGGTGGAGG+AGG | - | tig0024501:51281-51300 | Msa1417630:intron | 55.0% |
| ! | GTTGGTTCAAGTCCCGGCAA+CGG | + | tig0024501:51488-51507 | None:intergenic | 55.0% |
| CTGACGTGGCTGCTACAGTA+TGG | - | tig0024501:51564-51583 | Msa1417630:CDS | 55.0% | |
| GGCTGCTACAGTATGGGTGA+AGG | - | tig0024501:51571-51590 | Msa1417630:CDS | 55.0% | |
| TCTGCCTTCATGAGGCTCTG+TGG | + | tig0024501:52142-52161 | None:intergenic | 55.0% | |
| CCTCCTCCTCCACCGTAAAG+TGG | + | tig0024501:51287-51306 | None:intergenic | 60.0% | |
| CCACTTTACGGTGGAGGAGG+AGG | - | tig0024501:51284-51303 | Msa1417630:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0024501 | gene | 50639 | 53410 | 50639 | ID=Msa1417630;Name=Msa1417630 |
| tig0024501 | mRNA | 50639 | 53410 | 50639 | ID=Msa1417630-mRNA-1;Parent=Msa1417630;Name=Msa1417630-mRNA-1;_AED=0.07;_eAED=0.07;_QI=226|0.8|0.66|1|1|1|6|234|598 |
| tig0024501 | exon | 50639 | 51208 | 50639 | ID=Msa1417630-mRNA-1:exon:23580;Parent=Msa1417630-mRNA-1 |
| tig0024501 | exon | 51330 | 52115 | 51330 | ID=Msa1417630-mRNA-1:exon:23579;Parent=Msa1417630-mRNA-1 |
| tig0024501 | exon | 52190 | 52502 | 52190 | ID=Msa1417630-mRNA-1:exon:23578;Parent=Msa1417630-mRNA-1 |
| tig0024501 | exon | 52638 | 52786 | 52638 | ID=Msa1417630-mRNA-1:exon:23577;Parent=Msa1417630-mRNA-1 |
| tig0024501 | exon | 52894 | 52928 | 52894 | ID=Msa1417630-mRNA-1:exon:23576;Parent=Msa1417630-mRNA-1 |
| tig0024501 | exon | 53007 | 53410 | 53007 | ID=Msa1417630-mRNA-1:exon:23575;Parent=Msa1417630-mRNA-1 |
| tig0024501 | five_prime_UTR | 53185 | 53410 | 53185 | ID=Msa1417630-mRNA-1:five_prime_utr;Parent=Msa1417630-mRNA-1 |
| tig0024501 | CDS | 53007 | 53184 | 53007 | ID=Msa1417630-mRNA-1:cds;Parent=Msa1417630-mRNA-1 |
| tig0024501 | CDS | 52894 | 52928 | 52894 | ID=Msa1417630-mRNA-1:cds;Parent=Msa1417630-mRNA-1 |
| tig0024501 | CDS | 52638 | 52786 | 52638 | ID=Msa1417630-mRNA-1:cds;Parent=Msa1417630-mRNA-1 |
| tig0024501 | CDS | 52190 | 52502 | 52190 | ID=Msa1417630-mRNA-1:cds;Parent=Msa1417630-mRNA-1 |
| tig0024501 | CDS | 51330 | 52115 | 51330 | ID=Msa1417630-mRNA-1:cds;Parent=Msa1417630-mRNA-1 |
| tig0024501 | CDS | 50873 | 51208 | 50873 | ID=Msa1417630-mRNA-1:cds;Parent=Msa1417630-mRNA-1 |
| tig0024501 | three_prime_UTR | 50639 | 50872 | 50639 | ID=Msa1417630-mRNA-1:three_prime_utr;Parent=Msa1417630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
